Production of Recombinant Trichoderma reesei Cellobiohydrolase II in a New Expression System Based on Wickerhamomyces anomalus.
Cellulases are enzymes from the glycoside hydrolase family (EC 3.2.1.-) that are expressed by a broad spectrum of bacteria and fungi strains [1, 2]. Among these microorganisms, white- and brown-rot fungi are considered the major producers of cellulases, including Trichoderma sp., Aspergillus sp., Schizophyllum commune, and Volvariella volvacea [1, 2]. Cellulase is a family of at least three groups of enzymes: endo-(1,4)-[beta]-D-glucanase (EC 126.96.36.199, EG), exo-(1,4)-[beta]-D-glucanase (EC 188.8.131.52, CBH), and [beta]-glucosidases (EC 184.108.40.206, BG) . These enzymes act sequentially on the cellulose hydrolysis: (1) EG randomly attacks on O-glycosidic bonds resulting in glucan chains of different lengths, (2) CBH acts on glucan chains ends to release [beta]-cellobiose, and (3) BG hydrolyzes the [beta]-cellobiose to produce glucose .
Trichoderma reesei is one of the most important cellulases producing filamentous fungi, since it contains the core enzymes necessary for the complete hydrolysis of lignocellulose material . Among these enzymes, cellobiohydrolases have been shown to be one of the most important components within this process . Enzymes involved in hydrolysis of cellulose polymer molecules have been recombinantly expressed , which might allow reducing the production times and increasing the low proteins concentrations obtained with filamentous fungi. Recombinant expression might also facilitate the scaling up of the enzyme production, as well as the implementation of Simultaneous Saccharification and Fermentation (SSF) and Separate Hydrolysis and Fermentation (SHF) processes. Saccharomyces cerevisiae has been used for the production of recombinant CBH from Phanerochaete chrysosporium  and Talaromyces emersonii , while T. reesei CBHII has been expressed in S. cerevisiae [8, 9], P. pastoris [10, 11], and Y. lipolytica .
Conventional microbial systems (e.g., E. coli, S. cerevisiae, and P. pastoris) have allowed the production of a long list of recombinant proteins . However, there is a growing interest in the identification of new hosts that allow the production of high-quality or cost-efficient recombinant proteins . Recently, a native strain of Wickerhamomyces anomalus was isolated from sugar cane bagasse at Puerto Lopez, Meta, Colombia (unpublished results). W. anomalus is a yeast that has been isolated from different sources , and its reported applications include food biopreservation, bioremediation, and production of phytases and biofuels [14, 15]. However, to the best of our knowledge, there are no reports showing its use as host to produce recombinant proteins.
In this paper, we describe the production of recombinant cellobiohydrolase II (CBHII, EC 220.127.116.11) from T. reesei using the native strain W. anomalus 54-A. Furthermore, the effects of pH and temperature on enzyme activity were characterized, as well as the kinetic properties of the enzyme and its application on the hydrolysis of a lignocellulose material. Overall, the results showed the potential of W. anomalus 54-A as host to produce recombinant proteins and showed that recombinant T. reesei CBHII has similar characteristics to those reported for the wild-type enzyme.
2. Materials and Methods
2.1. Microorganism, Culture Media, and Vectors. W. anomalus 54-A was previously isolated from sugar cane bagasse at Puerto Lopez, Meta, Colombia. Initially, the microorganism was identified by carbon assimilation profile using the API 20C AUX kit (bioMerieux, Marcy l'Etoile, France). Further microorganism identification was done by amplification of internal transcribed spacer (ITS), using the primers ITS1 5'-TCCGTAGGTGAACCTGCGG-3' and ITS4 5'-TCCTCCGCTTATTGATATGC-3' and Pfu DNA polymerase (Thermo Fisher Scientific Inc., San Jose, CA, US), under manufacturer instructions. Identity of W. anomalus 54-A was finally confirmed by MALDI-TOF analysis (Unidad de Investigation en Proteomica y Micosis Humana, Pontificia Universidad Javeriana).
Plasmid pKS2-ST (Dualsystems Biotech, Schlieren, Switzerland) was used as expression vector. In this vector, protein expression is regulated by the alcohol dehydrogenase II promoter (EC 18.104.22.168, ADH2), while the secretion signal of the Saccharomyces cerevisiae invertase SUC2 mediates the secretion of the recombinant protein. Escherichia coli DH5 was used for cloning purposes, which was cultured in Luria-Bertani (LB) medium supplemented with 100 mg m[L.sup.-1] ampicillin. Yeast cultures were performed in YPD supplemented with 500 mg m[L.sup.-1] geneticin for the selection of clones and 60 mg m[L.sup.-1] for protein expression cultures.
2.2. Expression Vector and Recombinant Strains. Cellobiohydrolase II gene (cbhII) from T. reesei (GenBank Number GU724763.1) was previously codon-optimized for its expression in S. cerevisiae by GeneArt[TM] (Thermo Fisher Scientific Inc.) (unpublished data). The sequence encoding for the CBHII signal peptide was identified by using SignalP  and removed from the gene sequence. Comparison of the codon usage tables of S. cerevisiae and W. anomalus showed a similar profile between both microorganisms (Supplementary Figure 1 in Supplementary Material available online at https://doi.org/10.1155/2017/6980565) Two codons (CGC and CGG), which encode Arg (14 residues, 3%, in CBHII) showed significant differences between both microorganisms. Nevertheless, the other two Arg codons have a comparable usage between S. cerevisiae and W. anomalus. In this sense, this codon optimized sequence was used for the CBHII expression in W. anomalus 54-A. Codon optimized cbhII gene was inserted downstream of the SUC2 secretion signal in the vector pKS2-ST, to produce pKS2-ST::CBHII (Supplementary Figure 2). The pKS2-ST::CBHII vector was used to transform competent cells of W. anomalus 54-A by electroporation, using the Gene Pulser electroporation system Xcell[TM] (BioRad Laboratories) at 1400 V and 200 [ohm]. The W. anomalus 54-A clones were selected in YPD medium supplemented with 500 mg m[L.sup.-1] geneticin. Clones were confirmed by PCR using the primers 5'-GAGGAGAGCATAGAAATGGGG-3' and 5'-CAGCAGTAGCCATAGCACCA-3', which amplify a fragment from cbhII gene. The PCR-positive clones were evaluated at 55 mL scale, according to vector pKS2-ST manufacturer's instructions (Dualsystems Biotech). Briefly, each clone was incubated for 10 h in 10 mL YPD, after which 15 mL of fresh YPD medium was added. After 14 h incubation, 30 mL of fresh YPD medium was added to reach a final culture volume of 55 mL. After 6 h of incubation, it was expected that the glucose was exhausted, and this time was considered as the beginning of the induction phase. 1 mL aliquots were taken every 24 h for 96 h to measure extracellular enzyme activity and cell density. All the assays were performed in triplicate at 28[degrees]C and 180 rpm. Residual glucose quantitation was carried out by DNS method . Crude extracellular fractions of the clone with the highest enzyme activity were loaded and processed by SDS-PAGE.
2.3. Evaluation of Carbon Sources. The clone that showed the highest enzyme activity was used to evaluate the effect of carbon source (i.e., glucose and glycerol) on the enzyme production. Cultures were carried out in 2% (w/v) tryptone and 1% (w/v) yeast extract, supplemented with glycerol and glucose in different concentrations: 2% (w/v) glucose, 1% (w/v) glucose, 1% (w/v) glycerol, 2% (w/v) glucose, 1% (w/v) glycerol, and 2% (w/v) glycerol. All cultures were supplemented with 60 mg m[L.sup.-1] geneticin.
2.4. Culture at 2.4 L Scale. The W. anomalus 54-A clone that showed the highest CBHII activity at 55 mL scale was scaled up to 2.4 L in a 3.7 L Bioengineering KFL2000 bioreactor. Cultures were done in modified YPD medium [2% (w/v) tryptone, 1% (w/v) yeast extract, 1% (w/v) glucose, and 1% (w/v) glycerol] supplemented with 60 mg m[L.sup.-1] geneticin. Briefly, 2 mL from the cell bank was inoculated into 18 mL of culture medium and incubated for 24 h at 28[degrees]C and 180 rpm. The preinoculum was used to inoculate 180 mL of fresh culture medium and incubated for 24 h at 28[degrees]C and 180 rpm. Finally, the inoculum was used to inoculate 1000 mL of fresh culture medium at the bioreactor. After 15 h culture, 1200 mL of fresh medium was added to reach a final volume of 2.4 L and cultured during additional 96 h at 28[degrees]C, 400 to 800 rpm, and pH 6.0.
2.5. Cellobiohydrolase Activity Assay. The CBHII activity was carried out as previously described [18, 19], using 5mM p-nitrophenyl [beta]-D-cellobioside (pNPC, Sigma-Aldrich) in sodium acetate buffer 50 mM, pH 5.0. One enzyme unit was defined as the amount of enzyme releasing 1 [micro]mol of pnitrophenol per min, and the activity was expressed as U [L.sup.-1].
2.6. Characterization of Recombinant CBHII. The CBHII enzyme extract was evaluated at different pH and temperature conditions, using pNPC. To evaluate the effect of pH and temperature on enzyme activity, the enzyme activity assay was performed at 3.0, 4.0, 5.0, 6.0, 7.0, and 8.0 [+ or -] 0.2 and at 30, 40, 50, 60, and 70[degrees]C for 1h. The reactions were stopped and read as described above. Apparent kinetic parameters ([K.sub.M] and Vmax) were estimated for the crude extract by using pNPC between 0 and 6.5 mM and fitting the experimental data to a Michaelis-Menten model using the software GraphPad PRISM 6.0.
2.7. Chrysanthemum Wastes Degradation Assay. The effect of recombinant CBHII on cellulose hydrolysis was evaluated by using Chrysanthemum wastes, as previously described [18, 19], with modifications. Chrysanthemum wastes were autoclaved at 121[degrees]C for 15 min. Experiments were performed in substrate submerged cultures carried out in 100 mL flasks in a rotatory shaker at 150 rpm and 30[degrees]C, for 20 days. Flasks contained 1% Chrysanthemum wastes in 40 mL of the following enzyme crude extracts: (1) cellulolytic and hemicellulolytic extract from a Penicillium sp. culture (hereafter CeHem extract), (2) concentrated recombinant CBHII extract from W. anomalus 54-A (hereafter rCBHII), and (3) a 1:1 CeHem :rCBHII extracts mixture. Control culture was carried out by using 40 mL of distilled water. All cultures were carried out with 10 mM sodium azide, 0.1% tween 80, and pH 5.0. The response variable was the concentration ofreducing sugars as measured by DNS method . Results are reported as g [L.sup.-1] of reducing sugars after subtraction of the results obtained with the control cultures, and normalized by the initial unis of CBHII present in each extract. Production of Ce-Hem extract was carried out by using a Penicillium sp. strain (Collection of Microorganisms of Pontificia Universidad Javeriana). For this purpose, 20 mL of a [10.sup.6] conidia m[L.sup.-1] suspension was inoculated in 200 mL of a rice straw medium without nitrogen source and incubated for 8 days at 28[degrees]C and 120 rpm. The crude extract was obtained by centrifugation and sequential filtrations through Whatman paper Number 42 and 0.45 and 0.22 [micro]m polyether sulphone membranes (Pall Corp, Port Washington, NY, USA). Concentrated recombinant CBHII extract from W. anomalus 54-A was produced by using a 2.4 L culture of the W. anomalus 54-A Celo-3.2 clone, as described above. Culture medium was centrifuged at 8000g and filtered sequentially through Whatman paper Number 42 and 0.45 and 0.22 [micro]m polyether sulphone membranes (Pall Corp). Permeate was ultrafiltered through a 30 kDa cut-off membrane (Millipore, Billerica, MA, USA), until reaching a final volume of 20 mL. CBHII activity in both extracts was assayed as described above. The [beta]-glucosidase (BG) activity in both extracts was assayed using 5 mM 4-nitrophenyl [beta]-D-glucuronide (Sigma-Aldrich) as previously described [18, 19]. One BG unit was defined as the amount of enzyme releasing 1 [micro]mol of p-nitrophenol per min, and the activity was expressed as U [L.sup.-1]. The endoglucanase (EG) activity in both extracts was assayed using 2% carboxymethylcellulose (Sigma-Aldrich) [18, 19] and the DNS method for quantitation of reducing sugars . One EG unit was defined as the amount of enzyme releasing 1 [micro]mol of reducing sugars, equivalent to glucose, per min , and the activity was expressed as U [L.sup.-1].
2.8. Statistical Analysis. Differences between groups were tested for statistical significance by using one-way ANOVA. An error level of 5% (p < 0.05) was considered significant. All analyses were performed using the software GraphPad PRISM 6.0.
3. Results and Discussion
3.1. Production of Recombinant CBHII in W. anomalus 54-A. In this study, we evaluated the production of the recombinant CBHII in the native yeast strain 54-A, previously isolated from sugar cane bagasse from Puerto Lopez, Meta, Colombia. This strain showed a carbon assimilation profile (API 20C AUX, bioMerieux) different from that observed for S. cerevisiae strains, and it was identified as Pichia anomala (recently renamed as Wickerhamomyces anomalus ) with a 94.5% ID and 0,25 T value. Identity of this strain was further confirmed as W. anomalus through ITS amplification (GenBank accession number KX676490, Supplementary Figure 3) and MALDI-TOF analysis (Supplementary Figure 4). W. anomalus is a yeast that have been isolated from different sources, such as food- and feed-related systems, insects, and human clinical samples. This yeast has a wide robustness to environmental stresses conditions like extreme pH or low water activity . Biotechnological applications of W. anomalus strains include biopreservation agent due to antimicrobial activity against variety of microorganisms in fruits and cereals and production of enzymes (e.g., phytases), biofuels, and bioremediation [14, 15]. However, to the best of our knowledge, there are no reports of the use of this yeast as a host to produce recombinant proteins.
Four clones were obtained after transformation of W anomalus 54-A with the vector pKS2-ST::CBHII (Celo-2.2, Celo-3.2, Celo-4.2, and Celo-5.1), which were confirmed by PCR. The ADH2 gene promoter is repressed in the presence of glucose, since this metabolite inhibits the expression of the alcohol dehydrogenase regulator protein (Adr1) that is an activator of the ADH2 gene. On the other hand, under glucose depletion conditions, the expression of Adr1 is increased leading to the induction of the ADH2 gene . In this sense, we first determined the residual glucose during the culture of W. anomalus 54-A pKS2-ST::CBHII clones, to establish the beginning of the induction phase. We observed, for all the evaluated clones, that, at the final culture step, the glucose was consumed within the first 6 h of incubation (Supplementary Figure 5). In this sense, this point was considered as the beginning of the induction phase, which agrees with previous reports of the production of recombinant proteins in yeast under the control of the ADH2 gene promoter [22, 23]. Under these culture conditions, extracellular CBHII activity was only detected in W. anomalus 54-A Celo-3.2 clone, reaching a final enzyme activity of 5.7 U [L.sup.-1] after 96 h of induction (Figure 1(a)). As expected, CBHII activity was not detected in W. anomalus 54-A transfected with the empty vector.
As was mentioned above, T. reesei CBHII has been expressed in S. cerevisiae [8, 9], P. pastoris [10, 11], and Y. lipolytica . Recombinant CBHII produced in S. cerevisiae showed an activity of 25 S.I. U m[L.sup.-1] using barely [beta]-glucan as substrate , while recombinant CBHII produced in P pastoris GS115 showed an enzyme activity of 5.84 U m[L.sup.-1] at 96 h using microcrystalline cellulose PH101 as substrate . In P. pastoris X-33 and Y. lipolytica POld, extracellular recombinant CBHII activities were 0.25 and 0.36 U m[L.sup.-1], respectively, using phosphoric acid swollen cellulose (PASC) prepared from Avicel PH-101 as substrate . The differences in promoters, secretion signals, hosts, and enzyme activity substrates limit the comparison between these results and those obtained for recombinant CBHII produced in W anomalus 54-A. However, a crude culture broth from Penicillium sp. containing wild-type cellulase and hemicellulase enzymes (see Chrysanthemum Wastes Degradation Assay) showed a CBHII activity of 8.5 U [L.sup.-1] using the pNPC substrate, which was similar to that observed for the recombinant CBHII produced in W. anomalus 54-A. Nevertheless, these results are lower than those observed for erlenmeyer flask cultures of Pleurotus ostreatus, which showed an activity of 445.3 [+ or -] 27.6 U [L.sup.-1] using the pNPC substrate [18, 19].
SDS-PAGE analysis of extracellular fraction of W. anomalus 54-A Celo-3.2 showed that recombinant CBHII has an apparent molecular weight of about 66kDa (Figure 1(b)). This recombinant CBHII is higher than the wild-type enzyme produced by T. reesei (50-58 kDa) . However, recombinant CBHII produced in W. anomalus 54-A has a molecular weight similar to that reported for a CBHII produced in P. pastoris X33 and Y. lipolytica POld (~63-65 kDa)  but higher than that reported for the enzyme produced in P. pastoris GS115 (~58 kDa) . Differences in the molecular weight between wild-type and the recombinant counterpart could be associated with the hypermannosylation observed in yeast, while the differences in the molecular weight among the recombinant CBHII could be associated with several factors of the culture conditions that affect the expression of glycosyltransferases .
3.2. Evaluation of Carbon Sources. To improve the production of recombinant CBHII, two glucose and glycerol concentrations were evaluated. First, 1% w/v glucose was evaluated, which is lower than the concentration suggested by the vector manufacturer (2% w/v). We hypothesize that 1% w/v glucose would be depleted faster than 2% w/v, allowing a reduction in the induction time and a longer and higher enzyme production . In addition, glycerol, alone or in combination with glucose, was also evaluated as a carbon source, since it was expected that glycerol would be used for yeast growth after depletion of glucose, increasing the production of the recombinant enzyme.
Figure 2 shows the results of volumetric activity (U [L.sup.-1]) and enzyme activity normalized by biomass (U [g.sup.-1] dry weight of cells). A similar activity profile was observed between volumetric and normalized enzyme activities, suggesting that the production of recombinant CBHII was associated with yeast growth. In fact, the profile of recombinant CBHII production was similar to that previously reported for the ADH2 promoter, with a complete induction in the late stationary phase (>36 h culture) . The results showed that in 2% (w/v) glycerol cultures no CBHII activity was detected, suggesting that the glycerol was used for cell growth or that the ADH2 promoter needs to sense the glucose depletion to induce the gene expression. On the other hand, lower CBHII activity was observed at 2% (w/v) glucose, 1% (w/v) glycerol, cultures compared to that obtained with 2% (w/v) glucose (p < 0.001). Finally, the highest CBHII activity was observed at 1% (w/v) glucose, 1% (w/v) glycerol, although this was not statistically different regarding the levels obtained with 2% (w/v) glucose (p > 0.05). However, 1% (w/v) glucose, 1% (w/v) glycerol, allowed an earlier detection of the enzyme activity than that observed with 2% (w/v) glucose. In this sense, 1% (w/v) glucose, 1% (w/v) glycerol, was selected to produce recombinant CBHII at 2.4 L scale. The reasons of the effect of glycerol on CBHII activity are unknown, and further investigations should be carried out to clarify this aspect. Nevertheless, it is important to mention that there is a wide variation among yeasts, and even strains, regarding glycerol metabolism (i.e., uptake and catabolism) . Although the metabolic pathways and the uptake and regulation (e.g., catabolic repression) process have been widely described for S. cerevisiae, limited information is available for other yeasts . In this sense, the effect of glycerol on the changes of enzyme activity levels might be associated with the specific glycerol metabolism of W. anomalus 54-A.
3.3. Production of Recombinant CBHII at 2.4 L Scale. The production of recombinant CBHII enzyme at 2.4 L scale was carried out for 117 h after the final feeding step (see Materials and Methods). Figure 3 shows the behavior of dissolved oxygen (DO) during the production of recombinant CBHII at bioreactor scale, which could be associated with the consumption of the carbon sources. The CBHII activity was detected from the first 2h of culture (0.12 [+ or -] 0.08 U [L.sup.-1]). This activity significantly increased after 10 h (2.6 [+ or -] 0.09 U [L.sup.-1]) and continuously kept increasing to reach a final enzyme activity of 14.5 [+ or -] 0.86 U [L.sup.-1], which was 2.7-fold higher than that observed at 55 mL scale. These results might suggest that, under controlled culture conditions, the strict repression of the ADH2 promoter might be affected allowing the expression of the recombinant protein even in the presence of residual glucose.
3.4. Characterization of CBH Recombinant Extract. The effect of temperature and pH on the enzyme activity of the recombinant CBHII produced in W. anomalus 54-A was evaluated. In this work, crude extract rather than the purified recombinant CBHII was used for characterization, since this crude extract would be used in the production of bioethanol by the degradation of Chrysanthemum residues . As observed in Figure 4, optimum reaction temperature for recombinant CBHII crude extract was 40[degrees]C (p < 0.001), while the highest enzyme activities were observed at pH 5.0 and 6.0 [+ or -] 0.2 at all evaluated temperatures (p < 0.001). On the other hand, at pH 3.0 and 8.0 [+ or -] 0.2, a marked decrease in the enzymatic activity was observed regardless of the reaction temperature.
Using microcrystalline cellulose PH101 as substrate, recombinant CBHII produced in P. pastoris showed an optimum reaction pH and temperature of 5.0 [+ or -] 0.2 and 50[degrees]C, respectively. In addition, this recombinant enzyme showed a significant loss of activity at pH of 3.0, 7.0, and 8.0 and at 30[degrees]C and temperatures above 65[degrees]C . Recombinant CBHII enzyme produced in P. pastoris and Y lipolytica showed an optimum pH between 5.0 and 6.0 and at a temperature of 60[degrees]C. Recombinant CBHII produced in P. pastoris and Y. lipolytica also showed rapid inactivation at pH and temperatures above 7.0 and 60[degrees] C, respectively, while at temperatures below 40[degrees] C, an 80% loss in the enzyme activity was observed . In this sense, recombinant T. reesei CBHII produced in W. anomalus 54-A has a reaction pH profile similar to that reported for recombinant CBHII enzymes expressed in other yeast. Nevertheless, it seems that the optimum temperature of reaction differs among the recombinant CBHII enzymes, which might be associated with the substrate used for the enzyme activity assay or the posttranslational modifications carried out for each host. It is noteworthy that recombinant CBHII produced in W. anomalus 54-A only showed 30% reduction in enzyme activity at 30[degrees]C. Functionality at 30[degrees]C might allow the use of this enzyme in SSF processes for the production of bioethanol, since this temperature is also the optimum growth temperature for S. cerevisiae that is the preferable microorganism used during the fermentation stage of bioethanol production .
Kinetic parameters for the crude extract were estimated using pNPC as substrate (Supplementary Figure 6). Recombinant T. reesei CBHII produced in W. anomalus 54-A showed [K.sub.M] and Vmax of 2.73 mM (est. error 0.26) and 23.1 [micro]M [min.sup.-1] (est. error 0.89), respectively. This [K.sub.M] value agrees with those reported for wild-type CBHII enzymes (EC 22.214.171.124) isolated from different microorganisms, which vary between 0.1 and 3.1 mM, depending on the source of the enzyme . In the case of T. reesei CBHII enzymes there are no reports of kinetic parameters using pNPC substrate. Nevertheless, a wide variation in [K.sub.M] values is observed (i.e., between 0.041 and 380 mM), depending on the substrate used for this estimation .
3.5. Chrysanthemum Wastes Degradation Assay. To evaluate the effect of recombinant CBHII on cellulose hydrolysis, Chrysanthemum wastes degradation assay was performed using three enzyme extracts: (1) a crude culture broth from Penicillium sp. containing wild-type cellulase and hemicellulase enzymes (Ce-Hem extract), (2) a concentrated recombinant CBHII extract from W. anomalus 54-A (rCBHII extract), and (3) a 1:1 Ce-Hem: rCBHII extracts mixture. After treatment, 0.2 [+ or -] 0.02, 0.4 [+ or -] 0.01, and 1.25 [+ or -] 0.1 g[L.sup.-1] of reducing sugars were observed for Ce-Hem, rCBHII, and 1:1 Ce-Hem : rCBHII extracts, respectively. However, when reducing sugar concentration was normalized by the CBHII units present in each extract at the beginning of the experiment (Figure 5), it was observed that rCBHII extract had production of reducing sugars similar to that obtained with the Ce-Hem extract (p > 0.05). Noteworthy, the use of a 1:1 Ce-Hem : rCBHII extracts mixture allowed an increase of about 5-fold, in the reducing sugars per CBHII unit, in comparison with the results obtained by using the Ce-Hem or concentrated recombinant CBHII extracts alone, suggesting a synergistic effect of the combination of these two enzymatic extracts. To understand the reasons of this synergistic effect, we measured the activity of [beta]-glucosidase (BG) and endoglucanase (EG) in the extracts (Figure 5). Whereas BG was detected in the three evaluated extracts, EG was only detected in Ce-Hem and Ce-Hem: rCBHII extracts. Nevertheless, there was no correlation between BG and EG activity and the increase in reducing sugars observed with the Ce-Hem: rCBHII extract. In this sense, we hypothesize that the synergistic effect observed in the Ce-Hem:rCBHII treatment could be associated with the presence of other enzymes, such as lignin peroxidase, xylanase, laccase, and manganese peroxidase .
Chrysanthemum wastes degradation using enzymatic extracts with native or recombinant cellulases has not been previously reported. For this lignocellulosic waste, degradation with P. ostreatus showed a production of 9.6 g[L.sup.-1] of reducing sugars . The higher production of reducing sugars using P. ostreatus could be associated with the production of several lignocellulolytic enzymes by P. ostreatus such as laccases (up to 6 isoforms), manganese peroxidases, cellulases, and xylanases [30-32]. The presence of all these lignocellulolytic enzymes has shown an improvement in the delignification and reducing sugars production processes [29, 33]. In addition, the use of enzymatic extracts with recombinant cellulases, to degrade lignocellulosic materials, has been preceded by chemical or physical-chemical delignification treatments, such as alkaline  or steam  pretreatments. These pretreatments allowed higher reducing sugar levels than those reported in the present study (between 1.2 and 2.0 g [L.sup.-1]), showing the importance of lignin degradation to increase biomass digestibility . Nevertheless, these results showed that an enzymatic extract of W. anomalus 54-A carrying a recombinant T. reesei CBHII allows production of reducing sugars similar to that of a crude extract from cellulolytic fungi, showing the potential of W. anomalus 54-A as a host to produce recombinant cellulases.
In conclusion, we reported the production of the recombinant T. reesei CBHII in W. anomalus 54-A strains. The results showed production of recombinant CBHII in W. anomalus 54-A, with enzyme activity levels of up to 14.5 U[L.sup.-1]. Recombinant CBHII showed optimum pH and temperature reaction of 5.0-6.0 [+ or -] 0.2 and 40[degrees]C, respectively, which were similar to those reported for other recombinant T. reesei CBHII enzymes. Km of this recombinant CBHII was between the ranges of values reported for other CBHII enzymes. The results showed that an enzymatic extract of W. anomalus 54-A carrying the recombinant T. reesei CBHII allows production of reducing sugars similar to that of a crude extract from cellulolytic fungi, showing the potential of W anomalus 54-A as a host to produce recombinant cellulases. Noteworthily, this is the first report on the use of W. anomalus as a host to produce heterologous proteins. Further studies should be focused on the consolidation of W. anomalus as a platform to produce recombinant proteins such as the design of specific expression vectors and the generation of auxotrophic strains.
One-Sentence Summary. This work represents the first report on the use of the yeast Wickerhamomyces anomalus as a host to produce heterologous proteins.
Conflicts of Interest
The authors declare that they have no conflicts of interest.
The authors thank Dr. Pilar Melendez from Pharmacy Department at Universidad Nacional de Colombia for the kind donation of the W. anomalus A-54 strain. Dennis J. Diaz-Rincon and Alexander Rodriguez-Lopez received young researcher and doctoral scholarship, respectively, from Pontificia Universidad Javeriana. Angela Espejo-Mojica received a doctoral scholarship from the Administrative Department of Science, Technology and Innovation, Colciencias. The authors thank Nicolas Contreras for his assistance during performing experiments. This work was supported by Pontificia Universidad Javeriana [Grant ID 00005578, Produccion de Etanol Mediante la Degradacioon de Residuos de Crisantemo Empleando Enzimas Recombinantes Producidas en Saccharomyces cerevisiae].
 L. Cuervo, J. L. Folch, and R. E. Quiroz, "Lignocelulosa como fuente de azucares para la produccion de etanol," BioTecnologia, vol. 13, pp. 11-25, 2009.
 V. Juturu and J. C. Wu, "Microbial cellulases: Engineering, production and applications," Renewable and Sustainable Energy Reviews, vol. 33, pp. 188-203, 2014.
 R. C. Kuhad, R. Gupta, and A. Singh, "Microbial cellulases and their industrial applications," Enzyme Research, vol. 2011, Article ID 280696,11 pages, 2011.
 J. Zhou, Y.-H. Wang, J. Chu, L.-Z. Luo, Y.-P. Zhuang, and S.-L. Zhang, "Optimization of cellulase mixture for efficient hydrolysis of steam-exploded corn stover by statistically designed experiments," Bioresource Technology, vol. 100, no. 2, pp. 819-825, 2009.
 M. Tanghe, B. Danneels, A. Camattari et al., "Recombinant Expression of Trichoderma reesei Cel61A in Pichia pastoris: Optimizing Yield and N-terminal Processing," Molecular Biotechnology, vol. 57, no. 11-12, pp. 1010-1017, 2015.
 S. H. Petersen, W. H. Van Zyl, and I. S. Pretorius, "Development of a polysaccharide degrading strain of Saccharomyces cerevisiae," Biotechnology Techniques, vol. 12, no. 8, pp. 615-619, 1998.
 J. H. D. Van Zyl, R. Den Haan, and W. H. Van Zyl, "Overexpression of native Saccharomyces cerevisiae exocytic SNARE genes increased heterologous cellulase secretion," Applied Microbiology and Biotechnology, vol. 98, no. 12, pp. 5567-5578, 2014.
 M. Bailey, M. Siika-aho, A. Valkeajarvi, and M. Penttila, "Hydrolytic properties of two cellulases of Trichoderma reesei expressed in yeast," Biotechnology and Applied Biochemistry, vol. 17, no. 1, pp. 65-76, 1993.
 M. E. Penttila, L. Andre, P. Lehtovaara, M. Bailey, T. T. Teeri, and J. K. C. Knowles, "Efficient secretion of two fungal cellobiohydrolases by Saccharomyces cerevisiae," Gene, vol. 63, no. 1, pp. 103-112, 1988.
 H. Fang and L. Xia, "Heterologous expression and production of Trichoderma reesei cellobiohydrolase II in Pichia pastoris and the application in the enzymatic hydrolysis of corn stover and rice straw," Biomass and Bioenergy, vol. 78, pp. 99-109, 2015.
 N. Boonvitthya, S. Bozonnet, V. Burapatana, M. J. O'Donohue, and W. Chulalaksananukul, "Comparison of the heterologous expression of trichoderma reesei endoglucanase II and cellobiohydrolase II in the yeasts pichia pastoris and yarrowia lipolytica," Molecular Biotechnology, vol. 54, no. 2, pp. 158-169, 2013.
 A. L. Demain and P. Vaishnav, "Production of recombinant proteins by microbes and higher organisms," Biotechnology Advances, vol. 27, no. 3, pp. 297-306, 2009.
 J. L. Corchero, B. Gasser, D. Resina et al., "Unconventional microbial systems for the cost-efficient production of high-quality protein therapeutics," Biotechnology Advances, vol. 31, no. 2, pp. 140-153, 2013.
 V. Passoth, M. Olstorpe, and J. Schnurer, "Past, present and future research directions with Pichia anomala," Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, vol. 99, no. 1, pp. 121-125, 2011.
 L. De Vuyst, H. Harth, S. Van Kerrebroeck, and F. Leroy, "Yeast diversity of sourdoughs and associated metabolic properties and functionalities," International Journal of Food Microbiology, vol. 239, pp. 26-34, 2016.
 T. N. Petersen, S. Brunak, G. Von Heijne, and H. Nielsen, "SignalP 4.0: discriminating signal peptides from transmembrane regions," Nature Methods, vol. 8, no. 10, pp. 785-786, 2011.
 G. L. Miller, "Use of dinitrosalicylic acid reagent for determination of reducing sugar," Analytical Chemistry, vol. 31, no. 3, pp. 426-428, 1959.
 B. Quevedo-Hidalgo, P. C. Narvaez-Rincon, A. M. Pedroza-Rodriguez, and M. E. Velasquez-Lozano, "Degradation of chrysanthemum (dendranthema grandiflora) wastes by pleurotus ostreatus for the production of reducing sugars," Biotechnology and Bioprocess Engineering, vol. 17, no. 5, pp. 1103-1112, 2012.
 B. Quevedo-Hidalgo, F. Monsalve-Marin, P. C. Narvaez-Rincon, A. M. Pedroza-Rodriguez, and M. E. Velasquez-Lozano, "Ethanol production by Saccharomyces cerevisiae using lignocellulosic hydrolysate from Chrysanthemum waste degradation," World Journal of Microbiology and Biotechnology, vol. 29, no. 3, pp. 459-466, 2013.
 N. Ali, Z. Ting, H. Li et al., "Heterogeneous Expression and Functional Characterization of Cellulose-Degrading Enzymes from Aspergillus niger for Enzymatic Hydrolysis of Alkali Pretreated Bamboo Biomass," Molecular Biotechnology, vol. 57, no. 9, pp. 859-867, 2015.
 C. P. Kurtzman, "Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus," Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, vol. 99, no. 1, pp. 13-23, 2011.
 K. M. Lee and N. A. DaSilva, "Evaluation of the Saccharomyces cerevisiae ADH2 promoter for protein synthesis," Yeast, vol. 22, no. 6, pp. 431-440, 2005.
 V. L. Price, W. E. Taylor, W. Clevenger, M. Worthington, and E. T. Young, "Expression of heterologous proteins in Saccharomyces cerevisiae using the ADH2 promoter," Methods in Enzymology, vol. 185, pp. 308-318, 1990.
 T. T. Teeri, P. Lehtovaara, S. Kauppinen, I. Salovuori, and J. Knowles, "Homologous domains in Trichoderma reesei cellulolytic enzymes: Gene sequence and expression of cellobiohydrolase II," Gene, vol. 51, no. 1, pp. 43-52, 1987.
 B. Laukens, C. De Visscher, and N. Callewaert, "Engineering yeast for producing human glycoproteins: Where are we now?" Future Microbiology, vol. 10, no. 1, pp. 21-34, 2015.
 M. Klein, S. Swinnen, J. M. Thevelein, and E. Nevoigt, "Glycerol metabolism and transport in yeast and fungi: established knowledge and ambiguities," Environmental Microbiology, vol. 19, no. 3, pp. 878-893, 2017.
 D. Kennes, H. N. Abubackar, M. Diaz, M. C. Veiga, and C. Kennes, "Bioethanol production from biomass: Carbohydrate vs syngas fermentation," Journal of Chemical Technology and Biotechnology, vol. 91, no. 2, pp. 304-317, 2016.
 A. Chang, I. Schomburg, S. Placzek et al., "BRENDA in 2015: Exciting developments in its 25th year of existence," Nucleic Acids Research, vol. 43, no. 1, pp. D439-D446, 2015.
 O. Sanchez, R. Sierra, and C. J. Almeciga-Diaz, "Delignification Process of Agro-Industrial Wastes an Alternative to Obtain Fermentable Carbohydrates for Producing Fuel," in Alternative Fuel, M. Manzanera, Ed., InTech, pp. 111-154, Rijeka, 2011.
 R. Castanera, G. Perez, A. Omarini et al., "Transcriptional and enzymatic profiling of pleurotus ostreatus laccase genes in submerged and solid-state fermentation cultures," Applied and Environmental Microbiology, vol. 78, no. 11, pp. 4037-4045, 2012.
 J. M. R. da Luz, M. D. Nunes, S. A. Paes, D. P. Torres, M. D. C. S. da Silva, and M. C. M. Kasuya, "Lignocellulolytic enzyme production of Pleurotus ostreatus growth in agroindustrial wastes," Brazilian Journal of Microbiology, vol. 43, no. 4, pp. 1508-1515, 2012.
 O. S. Isikhuemhen and N. A. Mikiashvilli, "Lignocellulolytic enzyme activity, substrate utilization, and mushroom yield by Pleurotus ostreatus cultivated on substrate containing anaerobic digester solids," Journal of Industrial Microbiology and Biotechnology, vol. 36, no. 11, pp. 1353-1362, 2009.
 J. Placido and S. Capareda, "Ligninolytic enzymes: a biotechnological alternative for bioethanol production," Bioresources and Bioprocessing, vol. 2, no. 23, pp. 1-12, 2015.
 S. P. Das, A. Ghosh, A. Gupta, A. Goyal, and D. Das, "Ligno-cellulosic fermentation of wild grass employing recombinant hydrolytic enzymes and fermentative microbes with effective bioethanol recovery," BioMed Research International, vol. 2013, Article ID 386063, 2013.
Dennis J. Diaz-Rincon, (1) Ivonne Duque, (1) Erika Osorio, (1) Alexander Rodriguez-Lopez, (1,2) Angela Espejo-Mojica, (1) Claudia M. Parra-Giraldo, (3) Raul A. Poutou-Pinales, (4) Carlos J. Almeciga-Diaz, (1) and Balkys Quevedo-Hidalgo (4)
(1) Institutefor the Study of Inborn Errors of Metabolism, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogota, Colombia
(2) Departamento de Quimica, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogota, Colombia
(3) Unidad de Proteomica y Micosis Humanas, Grupo de Enfermedades Infecciosas, Departamento de Microbiologia, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogota, Colombia
(4) Grupo de Biotecnologia Ambiental e Industrial (GBAI), Departamento de Microbiologia, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogota, Colombia
Correspondence should be addressed to Carlos J. Almeciga-Diaz; firstname.lastname@example.org and Balkys Quevedo-Hidalgo; email@example.com
Received 12 May 2017; Revised 19 July 2017; Accepted 2 August 2017; Published 30 August 2017
Academic Editor: Sunney I. Chan
Caption: Figure 1: Recombinant T. reesei CBHII produced in W. anomalus 54-A. (a) PCR-positive clones of W. anomalus 54- A were evaluated at 55 mL scale and the activity of recombinant T. reesei CBHII was assayed in the extracellular fraction. Among the four PCR- positive clones, only W. anomalus 54-A Celo 3.2 clone showed CBHII activity. No activity was observed in W. anomalus 54-A transfected with the empty vector. Each clone was evaluated in triplicate. (b) Crude extracellular extracts from W. anomalus 54-A Celo 3.2 at 0 and 92 h were evaluated by SDS-PAGE, followed by silver staining. The arrow indicates the recombinant CBHII.
Caption: Figure 2: Effect of the carbon source on the production of recombinant T. reesei CBHII. Production of recombinant CBHII was carried out at 55 mL with 2% (w/v) glucose (circle), 2% (w/v) glycerol (square), 2% (w/v) glucose, 1% (w/v) glycerol (up triangle), and 1% (w/v) glucose, 1% (w/v) glycerol (down triangle). Enzyme activity is reported as U [L.sup.-1] (continuous line) and U [g.sup.-1] dry weight of cells (dashed line). Each experiment was done in triplicate.
Caption: Figure 3: Production of recombinant T. reesei CBHII in W. anomalus 54-A at 2.4 L scale. Recombinant T. reesei CBHII was produced at 2.4 L with 1% (w/v) glucose and 1% (w/v) glycerol. Production was followed by 117 h after the final feeding step. Dissolved oxygen (%), cell density (g[L.sup.-1]), and extracellular enzyme activity (U [L.sup.-1]) are reported.
Caption: Figure 4: Effect of temperature and pH on reaction of recombinant T. reesei CBHII. The enzyme activity of recombinant T. reesei CBHII produced in W. anomalus 54-A was evaluated at different pH and temperatures reactions condition. Each experiment was carried out in triplicate. Activity is reported as % Relative Activity as compared with the highest activity obtained in the experiment (40[degrees]C, pH 5).
Figure 5: Chrysanthemum wastes degradation assay. The effect of recombinant CBHII on cellulose hydrolysis was evaluated by using Chrysanthemum wastes. Flasks that contained 1% Chrysanthemum wastes were incubated for 20 days at 150 rpm and 30[degrees]C with a crude culture broth from Penicillium sp. containing wild-type cellulase and hemicellulase enzymes (Ce-Hem extract), concentrated recombinant CBHII extract from W. anomalus 54-A (rCBHII), and a 1:1 Ce-Hem: rCBHII extracts mixture. Results are reported as g [L.sup.-1] of reducing sugars per unit of CBHII after subtraction of the results obtained with the control cultures. * * ** = p < 0.0001. The table shows the enzyme activities of CBHII, [beta]-glucosidase (BG), and endoglucanase (EG) present in the enzymatic extracts at the beginning of the assay. Enzyme activity (U/L) CBHII 8.5 18.1 11.5 BG 352.4 303.2 150.1 EG 108.9 N.D. 81.9
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|Title Annotation:||Research Article|
|Author:||Diaz-Rincon, Dennis J.; Duque, Ivonne; Osorio, Erika; Rodriguez-Lopez, Alexander; Espejo-Mojica, Ang|
|Date:||Jan 1, 2017|
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