Molecular Evolution of Spider Vision: New Opportunities, Familiar Players.
Spiders are a large and ancient group of animals. The earliest spiders may have arisen as early as the Devonian (~400 million years ago; Foelix, 2011), and since that time, their numbers have grown to an estimated 80,000 extant species (Raven and Yeates, 2007), with only a little over half of these species described (46,433 species described to date; Platnick, 2017). These diverse animals are found in every biome and on every continent, save Antarctica (Turnbull, 1973). They are voracious predators (Jackson and Pollard, 1996), often playing a role in the control of prey populations (Riechert and Lockley, 1984) and the dynamics of trophic cascades (Schmitz et al., 1997; Schmitz, 2008). Several large families of hunting spiders are also highly visual (Land, 1985; Foelix, 2011), including the wolf spiders (Lycosidae), lynx spiders (Oxyopidae), and jumping spiders (Salticidae). Others, such as the orb weavers (Araneidae), rely less on their eyes for prey capture yet still retain visual functions that play an important role in their daily lives (Foelix, 2011).
Despite their taxonomic diversity and often-visual habits, our understanding of the molecular and genetic basis of spider visual systems lags significantly behind that of other major animal groups. This is unfortunate, because spider visual systems are highly diverse and hence present many useful opportunities to probe the genetic bases of visual specializations. Their phylogenetic position within the Arthropoda also provides a critical opportunity for deepening our understanding of the conservation and/or retooling of ancient developmental pathways. Efforts along these lines promise to provide important new insights into how and why visual systems evolve in the way they do.
Despite the paucity of genetic information on vision in this group, several recent studies (Eriksson et al., 2013; Samadi et al., 2015; Schomburg et al., 2015), along with the increasing availability of transcriptomic data, are providing new opportunities to evaluate the molecular underpinnings of spider vision. In this review, we highlight some of these opportunities in the hopes of convincing researchers interested in the molecular basis of vision to give spiders "another look."
We begin by describing some of the general features of spider vision and visual ecology. This is a large topic. Thus, we seek to survey some of the more salient aspects of the diversity available in this group. We then move to discuss hypotheses regarding the origins of the arachnid eye. These hypotheses are perhaps best resolved by looking at the genetic basis of spider eye development, the topic we tackle next. Research on spider eye development and its evolution is almost nonexistent, but the few studies that do exist allow us to highlight promising candidate genes and gene networks, many of which are already familiar from other groups. We then turn our gaze from development to core genes of the phototransduction cascade, with a particular focus on opsins. Available transcriptomic data provide us with some initial glimpses into spider opsin evolution. Finally, we conclude with a discussion of next steps and critical needs. There is much to be done. We hope to convince you to join us.
Spider Vision: Versatility Through Modularity
Spiders have eight simple eyes, with the exception of a few unusual taxa that have only six (Land, 1985). These eyes comprise four eye pairs named after their relative positions on the head: the anterior median (AM) eyes, anterior lateral (AL) eyes, posterior median (PM) eyes, and posterior lateral (PL) eyes (Fig. 1A). The four eye pairs can be divided into two fundamental types: the AM eyes are called "principal" eyes, whereas the AL, PM, and PL eyes are all "secondary" eyes. While the principal and secondary eyes often appear similar from the outside, they differ in their internal morphology, developmental basis, functional capabilities, and neural connectivity to the brain (Fig. 1D; Land, 1985; Barth, 2002). These differences suggest distinct evolutionary histories, a topic we approach later in this review.
The differences between principal and secondary eyes offer a good starting point for understanding the visual system of spiders. These begin with differences in retinal morphology (Homann, 1971). The retinas of principal eyes are everted, which is to say that the light-sensitive rhabdomeres of their photoreceptors face toward incoming light, with the cell bodies positioned below (Fig. 1D). This is in contrast to the secondary eyes, whose retinas are inverted, with their rhabdomeres positioned below their photoreceptor cell bodies (Fig. 1D; Homann, 1971). This morphological distinction suggests major differences in the development of these retinas (Homann, 1971; Paulus, 1979). It also poses challenges for the sensitivity of the secondary eyes, because their photoreceptor cell bodies often lie in the light path and are therefore prone to absorbing or scattering photons before they can reach the light-sensitive visual pigments in the underlying rhabdomeres (Blest, 1985a; Walla et al., 1996). Several families, including the Salticidae and Sparassidae, have relocated these cell bodies lateral to the rhabdomal region and therefore outside of the light path (Blest, 1985a). Where this is not the case, this challenge appears to have been addressed by increased transparency of the cell bodies in the secondary eyes, increased size of the rhabdoms, and presence of an underlying reflective tapetum that approximately doubles the light path available to incident photons (Fig. 1D; Homann, 1971).Tapeta are entirely lacking in the principal eyes, consistent with the greater sensitivity offered by their everted retinas (Homann, 1971).
These inherent differences in photoreceptor sensitivity may also help to explain other common differences between principal and secondary retinas, such as their acuity and spectral sensitivity. Principal eyes often exhibit higher spatial acuity than secondary eyes as the result of denser photoreceptor packing and/or advanced optics, like the dual lens systems of jumping spiders (Williams and McIntyre, 1980; Land, 1985), adaptations that may have been enabled by the sensitivity of these photoreceptors. In addition, when color vision exists in spiders, it is often provided by the principal eyes through the expression of multiple photoreceptor types that differ in their peak spectral sensitivity (Yamashita, 1985; Zurek etal., 2015). Color vision comes at an inherent sensitivity cost, because it requires the comparison of inputs from photoreceptors with restricted yet distinct spectral sensitivities (Cronin et al., 2014). Moreover, color vision requires multiple receptors to have over-lapping visual fields, leading to costly redundancies in spatial sampling. Thus, it is not surprising that it is the frequently layered, everted retinas of the principal eyes that tend to be used for color vision (Yamashita, 1985; Zurek et al., 2015). However, several notable exceptions exist, including the presence of ultraviolet (UV)-, blue-, and green-sensitive photoreceptor cells in the secondary eyes of the ctenid spider Cupiennius salei (Keyserling, 1877) (Walla et al., 1996) and orb weavers in the genus Argiope (Yamashita and Tateda, 1978; Yamashita, 1985). Diversity in the retinal location and spectral range of color vision remains critically understudied in spiders. Thus, it is difficult to know what arrangements are the "rule" versus the "exception" and whether more sophisticated color vision is widespread or has evolved only occasionally in derived taxa (e.g., Zurek et al., 2015).
Finally, the principal eye retinas are also unusual in that they can be moved behind their fixed lenses by dedicated muscles attached to the retinal envelope (Land, 1969a). The sophistication of this musculature and the resulting retinal movements differ across taxa. Some spider groups, such as the ctenids, lycosids, and thomisids, have only four retinal muscles and exhibit a modest repertoire of retinal movements composed of microsaccadic "twitches" of 2-4[degrees] and larger displacements of up to 15[degrees] (e.g., C. salei; Kaps and Schmid, 1996). The microsaccades are thought to help avoid adaptation of the principal eyes to nonmoving stimuli, whereas the larger gaze movements often preempt and lead body turns (e.g., C. salei; Kaps and Schmid, 1996) or track prey without betraying their position by moving their bodies. However, salticids have elaborated both their principal eye musculature and associated retinal movements. These animals have six retinal muscles that enable not only vertical and horizontal displacements in a range of up to 50[degrees] but also torsional movements of the retina (Land, 1969a). The result is a sophisticated repertoire of microsaccadic, tracking, and scanning movements that allow these retinas to explore features of complex scenes in ways we are only beginning to understand (Land, 1969a; Canavesi et al., 2011). The secondary eyes universally lack eye musculature or retinal movement. Taken together, these differences between the principal and secondary eyes lead to functional differences in the quality of visual information that each provide. The principal eyes typically offer higher spatial and spectral resolution, as well as retinal movements that support sustained evaluation of stationary objects and complex scenes. Thus, as their name implies, these eyes often (although not always) provide the "principal" functions we associate with our own foveal vision, including object discrimination, pattern detection, and object tracking. In contrast, the secondary eyes collaborate to provide a wider peripheral field of view that serves to detect objects or movements of interest and guide reorientation of the visual system to allow for subsequent evaluation by the principal eyes. We note, however, that in some hunting spiders (e.g., ctenids, lycosids), the acuity and sensitivity of the PM eyes can exceed that of the AM eyes, making these "secondary" eyes more prominent contributors to vision in these groups than this generic characterization would imply (Land, 1985; Land and Barth, 1992).
The morphological and functional distinction between principal and secondary eyes continues from the periphery into the brain. Principal and secondary visual inputs are processed in separate pathways with distinct neuropil regions, including separate laminae and medullae (Strausfeld and Barth, 1993; Strausfeld et al., 1993; Long, 2016). These pathways are then integrated in the higher processing centers of the protocerebrum, possibly beginning within or just before the arcuate body (also called the central body; Strausfeld and Barth, 1993; Strausfeld et al., 1993; Long, 2016). This integration remains poorly understood but is essential for both active vision (i.e., inputs from the secondary eyes help to guide principal eye retinal movements; Land, 1969a) and vision-based behavior, including body reorientations and predatory behavior.
Beyond this basic ground plan, it is difficult to generalize regarding spider vision. The modularity of the visual system has yielded extraordinary variety in the solutions different species have evolved to match their behavioral needs. And, in fact, it is this variety that provides such a compelling arena for understanding the underlying molecular evolution of spider visual diversity (Fig. 2). When traversing the spider "tree of life," one observes that every aspect of these eyes is subject to evolutionary tinkering, from their position on the head (Fig. 2A) to their lens optics, fields of view (Fig. 2B), sensitivity, resolution, and capacity to discriminate color and polarization (Land, 1985; Yamashita, 1985; Barth, 2002). Many of these changes are rather straightforwardly connected to the lifestyles of the animals. For example, the enormous PM eyes of the ogre-faced spiders in the genus Deinopis provide the necessary sensitivity for these nocturnal predators to capture flying prey by casting silk "nets," even under starlight conditions (Blest and Land, 1977; Blest, 1978). In contrast, the AM eyes of the diurnal jumping spider Phidippus johnsonni (Peckham &Peckham, 1883) are roughly 10,000 times less sensitive (Land, 1969b) but have far better spatial acuity, allowing these animals to identify and stalk prey.
Variation of this magnitude is not unusual when comparing some of the more exaggerated forms these visual systems have adopted, and, indeed, many opportunities exist to consider how spider visual systems have evolved to extremes. However, spiders also offer a number of more continuous axes of visual system differentiation that have the potential for connecting the evolution of vision, including its molecular basis, to specific sources of ecological selection. We briefly highlight a few of these here.
The first ubiquitous source of variation in spider vision involves where spider eyes "look." This may seem a simple variable, but it involves a complex interplay between eye position on the head and the size and relative position of lenses and retinas. The position of eyes on the head dictates how the visual system collects information from the full sphere around an animal. This is highly labile across spiders (Fig. 2A) and is likely driven by the visual requirements of different predatory lifestyles, although these links have yet to be rigorously explored. For example, active-hunting spider groups (e.g., Salticidae, Lycosidae, Sparassidae) often have enlarged forward-facing eyes that provide necessary visual information for prey identification and tracking, combined with nearly 360[degrees] of low-resolution peripheral vision for prey detection (Fig. 2; Land, 1985). In contrast, web-building groups (e.g., Tetragnathidae, Araneidae) and sit-and-wait predators (e.g., Thomisidae) often exhibit reduced eyes distributed more evenly around the top of the head (Fig. 2A). How such differences in spatial placement are accomplished during development is not known but is likely to involve genes responsible for patterns of cell growth and proliferation during embryogenesis.
Of course, the position of the eyes on the head is only part of the story. The field of view of each eye is also crucial in determining where a spider sees and how well. Fields of view are highly variable across spider taxa (Fig. 2B), the result of changes to both retinal morphology and the size, position, and optical properties of their associated lenses (Land, 1985; Barth, 2002). In addition, the relative placement of the retina with respect to the focal length of the overlying lens dictates how each eye is focused or, more precisely, the distance at which objects appear in focus (Land, 1981). This focusing distance determines the behavioral utility of an eye. Eyes that can resolve objects only many body lengths away are best suited for long-distance detection and identification, whereas those focused closer to the body can aid in prey handling and intraspecific communication. We note that there is currently no evidence of accommodation in spider vision, through either dynamic changes in lens shape or retinal position, and, thus, focusing distances are likely to remain constant, at least within a developmental stage.
Research on variation in field of view and focusing distance of spider eyes remains sparse, leaving us with a largely anecdotal sense of spider diversity on this front (Land, 1985; Barth, 2002). However, examples range from the narrow fields of view and remote minimal focusing distance (~20 cm) of the AM eyes of the araneophagic jumping spider Portia fimbriata (Doleschall, 1859) (Williams and McIntyre, 1980) to the wider fields of view and closer focusing distance (~4 mm) of the AM eyes in C. salei (Land and Barth, 1992). Some web-building spiders, including those in the genus Storena, even have underfocused and therefore only crudely image-forming eyes (Land, 1985), reminiscent of the optics of the dorsal ocellar system in some insects (Goodman, 1981). Work to understand the molecular, developmental, and physical bases of this variation is much needed.
Lastly, retinal properties show huge variation across spiders, including differences in spectral sensitivity, temporal speed, acuity, and overall light sensitivity (Blest and Price, 1984; Blest, 1985a, b; Yamashita, 1985; Barth, 2002). This variation is likely driven by differences in activity pattern (i.e., nocturnal vs. diurnal; Blest, 1978; Laughlin et al., 1980), habitat (e.g., forest vs. open habitats; Blest, 1985b), predatory lifestyle, and intraspecific communication (Zurek et al., 2015). It can also help to shape patterns of biodiversity in the behaviors and visual appearance of both conspecifics and prey. For example, jumping spiders in the genus Habronattus have evolved a retinal filter in the AM eyes that increases their spectral sensitivities from UV-green dichromacy to UV-green-red trichromacy (Zurek et al., 2015). This shift in visual sensitivity has changed the way that these animals interact with colored prey (Taylor et al., 2014, 2015) and may also help to explain the rapid diversification of color in the courtship displays of males in this group. Investigation of the molecular basis of these changes in visual sensitivity is only just beginning and is likely to be an exciting avenue of research in the years ahead.
The Evolutionary Origins of Spider Vision: A Tale of Two Eye Types
How does this variety in visual function arise? One place to start is to examine the evolutionary origins of spider eyes. As with any trait whose origins date back ~400 million years, reconstructing the evolution of spider eyes requires consulting the molecular basis of eyes in phylogenetic neighbors, including other chelicerates, insects, and crustaceans (Fig. 3).
As mentioned above, the biggest difference between spider eyes is the division between principal and secondary eye types. This division appears to be the result of an ancient evolutionary divergence. Specifically, there is evidence that the principal eyes are homologous to insect ocelli, whereas the secondary eyes likely derived from ancestral compound eyes (Paulus, 1979). The presence of median single eyes and lateral compound eyes is typical for the Euarthropoda, a pattern already apparent in fossils, including those of trilobites and horseshoe crabs (Paulus, 2000; Strausfeld et al., 2016). This division also manifests itself in development: the principal eyes develop from a median ectodermal groove and innervate the protocerebrum, whereas the secondary eyes develop from lateral head ectoderm and innervate the optic lobes that arise from the lateral protocerebrum (Strausfeld and Barth, 1993; Strausfeld et al., 1993). Further evidence for the fundamental difference between these two eye types derives from functional analysis in spiders, such as by Land and Barth (1992), which mirrors similar differences found in scorpions (Loria and Prendini, 2014), and from horseshoe crabs in the genus Limulus, in which the lateral eyes develop separately from the medial eyes (Harzsch et al., 2006).
Despite these functional and developmental distinctions between medial and lateral eyes, researchers have begun probing whether these two types of eyes share a common compound-eye origin even deeper in evolutionary time. For example, based on a recent analysis of regulatory gene networks in Drosophila melanogaster Meigen, 1830, Zhou et al. (2016) proposed that the medial eyes of insects are anciently related to their lateral eyes, presumably having budded off an ancestral photoreceptor organ that was present about ~500 million years ago, prior to the diversification of arthropods. Fossil evidence does support the idea that at least the compound-eye nature of the lateral eyes preceded the diversification of major arthropod lines (Strausfeld et al., 2016). Some debate exists, however, as to whether the relatively large and varied ommatidial units of Xiphosura and Myriapoda are an ancestral trait, from which the more stringently organized insect eyes evolved (Harzsch et al., 2005), or whether they are derived from an ancestor with more precisely regulated ommatidial cell identity (Paulus, 2000), as is known to be the insect-crustacean ancestral state.
This possibility of deep shared ancestry is important because it would be expected to leave its mark on the gene networks involved in eye development. For example, medial (principal) and lateral (secondary) eyes may share a core set of developmental genes (i.e., a proto-arthropod eye developmental network) but with key developmental differences arising between the eye types after their divergence. Such shared ancestry is apparent from the morphological development of arthropods. For example, a study of myriapod eye growth suggests that in this group, as in the much better-studied insect compound eyes, new units are added anteriorly row by row. The same is also the case in horseshoe crabs (Meadors et al., 2001; Harzsch et al., 2006) and is thought to have been the case in trilobites, suggesting that this type of eye growth is the ancestral pattern of arthropod lateral visual system formation (Harzsch et al., 2007).
From an optical point of view, it is worth noting that instead of crystalline cones that often assist refraction in insects and crustaceans, horseshoe crab lenses extend proximally and are the sole source of refractive power (Nilsson and Kelber, 2007). This difference of optical structure raises the possibility that despite shared compound-eye ancestry, optical structures in these two major lineages (myriapod/arachnid vs. insect/crustacean) may have evolved independently, hinting that their last common ancestor may have had eyes with little refractive power (Nilsson and Kelber, 2007) or a relatively simple corneal lens (Strausfeld et al., 2016).
How Image-Forming Eyes Evolved From Ommatidial-like Ancestors
Current evidence suggests that image-forming spider eyes may have evolved multiple times (Miether and Dunlop, 2016). In principle, there are two ways in which ancestral compound eyes can lead to image-forming camera-type eyes: fusion of multiple units that together give rise to a single eye, or enlargement of individual units that then each become image forming. Both transitions have been observed within stem-mata, the larval eyes of holometabolous insects (for review, see Buschbeck, 2014). Examples of stemmatal formation by combined fusion and expansion also exist, such as in the flour beetle Tribolium castaneum (Herbst, 1797) (Liu and Friedrich, 2004). However, it is more likely that arachnid eyes evolved from the expansion of individual ommatidia for the following reasons. First, the photoreceptor arrays of spider secondary eyes (Blest et al., 1980; Land and Barm, 1992) do not show remnants of ommatidial borders, as is often observed for eyes that have evolved from the fusion of multiple ommatidia (Nilsson and Modlin, 1994; Buschbeck, 2014). Second, in scorpions, which also have median (principal) and lateral (secondary) eyes, the latter are highly variable in number, composed of zero to five pairs (Loria and Prendini, 2014). In scorpions, all of the lateral eyes on each side are situated within a patch, which suggests that they developed from a single "eye field." Moreover, in 11 % of the scorpions examined by Loria and Prendini (2014), the number of units differed between the 2 sides. Thus, scorpion lateral eyes appear to originate from a variable number of individual "ommatidia" generated within a lateral eye field. This arrangement bears striking morphological resemblance to spider lateral eye development. Finally, preliminary genetic information provides tantalizing support for this model of spider lateral eye development from a primitive compound eye field. In the common house spider Parasteatoda tepidariorum (C. L. Koch, 1841), analyses of gene expression during embryonic development suggest that the secondary eyes initially develop from a common eye field that is subsequently split into three separate units, each giving rise to one eye (Schomburg et al., 2015).
If spider secondary eyes evolved from single ommatidia, what might these ancestral ommatidia have looked like? Given the phylogenetic position of horseshoe crabs within chelicerates, it is likely that their eyes most closely resemble those of the last common ancestors of extant chelicerates, and hence the structural organization of their ommatidia provides a good starting point for tackling this question. Compared to insect ommatidia, which are the product of exactly 26 stringently organized cells (Waddington and Perry, 1960), horseshoe crab ommatidia are composed of a much larger (>100) and more variable number of cells (Paulus, 1979). During development, the first ommatidia appear by the end of the first larval stage. From there, ommatidia are added row by row (Smith et al., 2002) but irregularly (Harzsch et al., 2006), such that the adult eye does not have the level of precision that is known from, for example, insect eyes. In addition, the average facet size increases by about sixfold between hatching and adulthood (Waterman, 1954). Thus, development of ommatidia in this ancestral eye field is likely to have been more flexible, and served by a greater number of cells, than is observed in insects. How such a system arrived at the fixed number of secondary eyes found in all spiders is an intriguing question that remains to be investigated.
Sparse but Definitive Overlap in Patterns of Gene Expression During Early Eye Development in Insects and Spiders
If spider secondary eyes indeed evolved from a compound-eye-like ancestor, then we can leverage the extensive knowledge of compound-eye development in insects to identify potential genes and gene networks involved in spider eye development (Fig. 3). Insect compound-eye development begins with the specification of photoreceptors, the molecular underpinnings of which involve the retinal determination network. This gene network is now well described in Drosophila melanogaster (for reviews, see Kumar, 2009, 2010). On the top of this network are the Pax-6 transcription factors eyeless (ey) and twin of eyeless (toy), which function as eye-field selector genes and are characterized by two highly conserved DNA-binding domains (the paired domain and a homeodomain). Work on cnidarians suggests that their Pax-6 ortholog may have evolved from an ancestral PaxB-like gene that duplicated after the separation of Bilateria from Cnidaria (Kozmik et al., 2003). The importance of this gene for retinal and eye formation is intriguing, since a wealth of earlier studies suggested nearly universal involvement in eye morphogenesis in both vertebrates and invertebrates alike (Gehring and Ikeo, 1999; Gehring, 2002). However, in recent years a number of examples have emerged in which animal eyes appear to develop without the expression of a Pax-6 ortholog, including the adult eyes of the annelid worms in the genus Platynereis (Arendt et al., 2002) and some of the photoreceptor subtypes of amphioxus (Glardon et al., 1998).
In chelicerates, Pax-6 ortholog expression has not been found in the developing eyes of the horseshoe crab Limulus polyphemus (Linnaeus, 1758) (Blackburn et al., 2008), despite its presence in their lateral sense organ (the function of which remains unclear). This is even more surprising when considering that the Limulus Pax-6 (Lp Pax6) paired domain region shares 92% amino acid identity with the corresponding region of Drosophila's Pax-6 version Toy. In addition, even though two Pax-6 orthologs were isolated from the spider Parastea-toda tepidariorum, expression analysis did not reveal the presence of either in any of the spider's eyes (Schomburg et al., 2015). On the other hand, a recent study of gene expression in the spider Cupiennius salei provides evidence for Pax-6 ortholog expression in the principal eyes but not in the secondary eyes (Samadi et al., 2015). Taken together, there are several instances in chelicerates where eye development may not depend on Pax-6 ortholog expression. However, more work is clearly needed to better define the role of Pax-6 orthologs in spider eye development (Fig. 3).
In Drosophila, downstream of ey and toy lies the core of the retinal determination network, composed of the Six gene family member sine oculis (so) and its transcriptional co-activator eyes absent (eya). As is the case for Pax-6, these genes and their orthologs have been found to be important in visual system development of both vertebrates and invertebrates (reviewed in Kumar and Moses, 2001; Vopalensky and Kozmik, 2009). Because these genes form a duplex, loss of either of them has been documented to lead to the loss of eye formation in Drosophila (Cheyette et al., 1994; Bonini et al., 1997; Pignoni et al., 1997) and Tribolium castaneum (Yang et al., 2009), and loss of function of the so ortholog prevents eye formation during regeneration in planaria (Pineda et al., 2000). Evidence for a conserved role of these genes more generally in arthropod eyes has been derived from a clever comparative analysis of gene expression between anciently diverged compound eyes and ocelli of Drosophila (Friedrich, 2006). In arachnids, we are aware of only two studies in which expression of these two genes was investigated. Remarkably, expression of spider orthologs to both so and eya was found in the principal and secondary eyes of C. salei (Samadi et al., 2015) and P. tepidariorum (Schomburg et al., 2015), albeit in each species different members of the Six gene family were found expressed in specific eyes (Fig. 3).
A third important retinal differentiation gene in this network is dachshund (dac). In Drosophila, loss of function of dac leads to the reduction or loss of compound eyes but not ocelli (Mardon et al., 1994). Interestingly, expression of spider orthologs has been observed in the secondary eyes but not principal eyes of both C. salei and P. tepidariorum (Samadi et al., 2015; Schomburg et al., 2015). These results hint that dac may play distinct roles in the development of compound eyes versus ocelli and provide further circumstantial support for the notion that spider secondary eyes may have compound-eye ancestry whereas principal eyes may derive from ocellar predecessors.
At this point we are at the infancy of chelicerate eye development research, and apart from these genes little else is known about what other genes might be involved in spider eye development. There are only two further genes that deserve mentioning here. First, there is the proneural transcription factor atonal (ato), which lies directly downstream of the determination network and in Drosophila is associated with photoreceptor differentiation (Jarman et al., 1994); ato was also predicted to be part of an ancestral network (Arendt et al., 2002), presumably conserved between compound eyes and ocelli (Friedrich, 2006). Recent findings highlight the shared use of the same cis-regulatory elements in these two organs, further supporting a deep evolutionary connection (Zhou et al., 2016). However, while the presence of its respective ortholog was documented in the lateral sense organ of the horseshoe crab L. polyphemus, ato ortholog expression was not found in developing L. polyphemus eyes (Blackburn et al., 2008). Likewise, two ato orthologs were identified in C. salei, but they were not found to be expressed in the spider's eyes (Fig. 3; Samadi et al., 2015).
The last gene to mention here is orthodenticle (otd), which in Drosophila is essential for the proper development of photoreceptors (McDonald et al., 2010; Terrell et al., 2012). This gene is also predicted to be part of the ancestral regulatory network (Friedrich, 2006; Friedrich et al., 2016). Interestingly, orthologs have been identified in the secondary but not principal eyes of C. salei (Samadi et al., 2015) and, rather curiously, in the principal but not secondary eyes of P. tepidariorum (Schomburg et al., 2015). It is worth noting here, however, that expression analyses are always somewhat tricky, and the absence of noted expression always leaves the possibility that expression levels are below the detection threshold or that expression is too transient to be detected.
Taken together, while we are just beginning to understand what genes might be involved in spider eye development, an intriguing picture is emerging that many of the genes responsible for eye development in other arthropods are also expressed in spider eyes. Thus, it is becoming increasingly plausible that much of the ancestral gene network that gave rise to Drosophila compound-eye development also underlies eye development in spiders (Fig. 3).
Spider Phototransduction: Preliminary Clues into Variation
Studies of spider phototransduction cascades and opsin proteins began relatively recently. The first opsin sequences characterized from spiders were from the jumping spiders Hasarius adansoni (Audouin, 1826) and Plexippus paykulli (Audouin, 1826) (Koyanagi et al., 2008). There is still relatively little known about the molecular aspects of spider phototransduction, with only a few additional species such as Cupiennius salei (Eriksson et al., 2013; Zopf et al., 2013) and Parasteatoda tepidariorum (Schomburg et al., 2015) receiving in-depth study. Thus, there is almost no literature to review, in the more traditional sense, on this topic. Instead, we have chosen to analyze publicly available data for preliminary clues into the molecular basis of spider phototransduction.
We assembled a set of previously published spider transcriptomes (Bond et al., 2014; Garrison et al., 2016). RNA-seq data from selected lineages representing differences in eye arrangement, visual behaviors, and ecologies (Table 1) were assembled using Trinity, version 2.0.6 (Grabherref al., 2011; Haas et al., 2013), on the National Center for Genome Analysis Support (NC-GAS) mason server; and we searched for phototransduction genes using phylogenetically informed annotation (Speiser et al., 2014). Each assembled Araneae RNA-seq data set was first entered into the KEGG Automatic Annotation Server (KAAS; Moriya et al., 2007; Kanehisa et al., 2017), where it was run against data from the genomes of Drosophila melanogaster and Ixodes scapularis Say, 1821. BLAST hits were then mapped onto the D. melanogaster phototransduction pathway map (KEGG pathway 04745) using KAAS (Kanehisa et al., 2016). Although no single transcriptome contained genes similar to all elements of the Drosophila phototransduction pathway (likely the result of the low sequence coverage of the source transcriptomes), when considering all transcriptomes as one large data set, we found evidence for Araneae versions of all key genes in the Drosophila phototransduction cascade (Fig. 4). This indicates that the canonical phototransduction elements known from insects may also be expressed in spider eyes.
Because of their importance in photon capture and initiation of the phototransduction cascade, we focused more deeply on analyses of spider opsins. Opsin transcripts identified in our source transcriptomes were converted to amino acid sequences and aligned with the data set from Battelle et al (2016) using MAFFT (Katoh et al. 2002; Katoh and Standley 2013) (see supplemental opsin alignment data, available online, for full alignment). The Battelle et al. (2016) data set already contained opsin sequences from several arachnids as well as those identified from the genomes of three xiphosuran horseshoe crabs for comparison. To phylogenetically place each transcript within known opsin evolutionary diversity, the resulting alignment of 565 in-group opsin amino acid sequences, 12 out-group sequences from Trichoplax adhaerens Schultze, 1883 and closely related nonopsin G protein-coupled receptors (e.g., mouse melatonin receptor and human thyroid-stimulating hormone receptor) were used to estimate phylogenetic relationships and node confidence as bootstrap values using RAxML (Stamatakis 2006, 2014; Stamatakis et al. 2008; Pattengale et al. 2010; Liu et al. 2012). Our phytogeny confirms earlier studies that the Araneae spiders contain opsins from three of the nine major opsin lineages present in the bilaterian ancestor (Ramirez et al., 2016): canonical r-opsins, canonical c-opsins, and peropsins (Fig. 5; Koyanagi et al. 2008; Nagata et al. 2010; Eriksson et al. 2013; Schomburg et al. 2015). We discuss each of these in more depth below.
Gq-opsin lineage: canonical r-opsins
Within the canonical r-opsins, spiders generally have two groups of opsins associated with spatial vision: long-wavelength-sensitive (LWS) and ultraviolet-sensitive (UVS) opsins. Based on our sampling, spiders in general appear to have very little variation in the numbers and types of expressed visual opsins (Fig. 6). The majority of the species investigated here have two LWS opsins and one UVS opsin. The involvement in spatial vision of the visual pigments formed from these opsins is confirmed in tissue expression studies in the salticid Hasarius adansoni. In H. adansoni, Nagata et al. (2012) identified four visual opsins (two LWS and two UVS) and found gene expression differences both among the eye types (AM, AL, PM, and PL) and among the four-tiered photoreceptor layers within the principal (AM) eyes. Within the principal eyes, the LWS opsin Rhl was expressed in the two deepest (proximal) retinal layers, while the UVS opsin Rh3 was expressed in the distal two retinal layers (Nagata et al., 2012). The Rhl opsin was also expressed in the AL and PL eyes. The remaining two opsins (LWS Rh2 and UVS Rh4) were mostly expressed in the PM eyes (Nagata et al., 2012).
Although there is little variation in the number of visual opsins among the species we investigated, the phylogenetic relationships among species and gene copies suggest a more complicated evolutionary history of lineage-specific duplication and loss. In the spider LWS opsins there are three main clades (Fig. 5). Two of the clades are well supported (LWS Rhl and LWS Rh2A in Fig. 5) and correspond to the salticid Rhl and Rh2 genes described in Koyanagi et al. (2008). Of the three identified LWS spider opsin clades, only the Rh2A clade has evidence of species-specific gene duplications, with multiple copies identified in Stegodyphus mimosarum Pavesi, 1883, Leucauge venusta (Walckenaer, 1842), and Cicurina vibora Gertsch, 1992. The third clade (LWS Rh2B in Fig. 5) contains sequences from only two spider species (Aptostichus stephencolberti Bond, 2008, and Aliatypus coylei Hedin & Carlson, 2011), the tick Ixodes scapularis, and the bark scorpion Mesobuthus martensii (Karsch, 1879). Although the low support values for this clade suggest that the evolutionary placement is still tenuous, the fact that the only spider species that we found with this opsin are from the basal Megalomorphae lineage suggests that this gene may have been lost in more derived spider lineages. This pattern leads to a clear difference in opsin gene expression between the Megalomorphae, which express opsins Rh2A and Rh2B, and the Araneomorphae, which express opsins Rh1 and Rh2A. The fact that most spider species investigated express two LWS opsins, but that there is a difference in which two opsins are expressed between the Megalomorphae and Araneomorphae, is an interesting pattern that warrants further investigation, particularly of opsin expression patterns among eyes and retinal layers. This hypothesis also suggests that we have potentially missed identifying the Rh2B opsin from the transcriptome of the tarantula Aphono-pelma iviei Smith, 1995. Additional investigations of species from both the Megalomorphae and the Araneomorphae will be needed to better characterize this potential difference in opsin expression and usage.
Another anomaly of opsin expression relative to the species studied here is the identification of a middle-wavelength opsin from the Megalomorphae species Aptostichus stephen-colberti (Figs. 5, 6). Although opsin genes from this clade have been identified from several xiphosuran horseshoe crab species (Battelle et al., 2016), this is the first characterization of a middle-wavelength-sensitive (MWS) opsin from a spider. Finding a MWS gene in A, stephencolberti suggests either that there has been massive gene loss of this opsin in other spider lineages or that it is expressed in a very small subset of cells and has been missed in most transcriptomic studies. As more spider genomes become available, testing these alternative hypotheses will become feasible.
In the short-wavelength-sensitive clade of opsins, there are two groups of chelicerate opsins (Fig. 5). The first clade consists of all of the UVS opsins identified in our set of species, including both UVS opsins previously described from Hasarius adansoni (Nagata et al., 2012). The latter implies that these UVS opsins are likely to be expressed in the eyes of these other species rather than extraocularly. However, we found evidence for UVS opsins in only 9 of the 13 spider species included here. Whether the remaining four species have lost this gene or it is just difficult to characterize requires further study. The identification of a second UVS opsin in the well-studied H. adansoni illustrates the difficulty in identifying transcripts from this clade when expressed in a subset of spider eyes and/or retinal layers (Nagata et al., 2012) and suggests that with further studies UVS opsins will most likely be identified in these species. However, the dim or dark habitats of three of the four species (nocturnal Deinopis longipes F. O. Pickard-Cambridge, 1902, cave-obligate Cicurina vibora, and burrow-dwelling Aliatypus coylei) where UVS opsins were not detected suggest the possibility of a tantalizing link between visual ecology and UVS opsin expression in spiders. A recent investigation of similar links between nocturnality and crepuscularity and opsin complement in insects revealed that UVS opsins are often retained but experience strong purifying selection in nocturnal and crepuscular insect lineages (Feuda et al., 2016). Further work on this topic would help to resolve potential differences and/or similarities between insects and spiders as to how their visual systems respond to changes in visual niche.
The second clade of chelicerate short-wavelength-sensitive opsins is the Rh7 clade, which are poorly characterized but have been found expressed in neural tissues in Drosophila (Kistenpfennig, 2012) and at low levels in dragonfly eyes (Futahashi et al., 2015). This clade is notable for the fact that while genes have been found in horseshoe crabs (Battelle et al., 2016) and in the genomes of scorpions (Mesobuthus martensii) and ticks (Ixodes scapularis), there has not yet been an Rh 7 opsin identified from an Araneae species. Here, we report evidence of Rh7 opsin in the Parasteatoda tepidariorum genome (Fig. 5). Much work is needed across the arthropods, including within spiders, to characterize the expression patterns and functions of this enigmatic group of opsin genes.
The final clade of arachnid opsins found in the canonical r-type opsin lineages are the arthropsins (Fig. 5). Similar to the Rh7 clade, the arthropsins are poorly characterized in terms of function, tissue expression patterns, and evolutionary history. A recent study in onychophorans found arthropsin expression in the neural tissues of the central nervous system (CNS) but not in the eyes, suggesting that arthropsins may be involved in extraocular photoreception (Eriksson et al., 2013). Similar expression patterns were found in the chelicerate Limulus polyphemus, with arthropsin expression found in three of four neural tissues tested, as well as in the ventral eye. It should be noted, however, that there were two copies of arthropsin identified in the L. polyphemus genome, but expression of only one was found in the retinal and neural tissues investigated (Battelle et al., 2016). In our data set, arthropsin expression was found only in Cupiennius salei and Parasteatoda tepidariorum, although we predict that arthropsin expression will be identified in more species as studies of spider opsins continue.
Tetraopsin clade: peropsins
The peropsins are members of the larger Tetraopsin lineage, which includes neuropsins, Go-opsins, retinal G protein-coupled receptor opsins, and retinochromes (Ramirez et al., 2016). The first arthropod peropsin identified was from the jumping spider Hasarius adansoni (Nagata et al., 2010). Subsequently, peropsins have been identified in Cupiennius salei (Eriksson et al., 2013), Parasteatoda tepidariorum (Schomburg et al., 2015), and Stegodyphus mimosarum (Henze and Oakley, 2015). We also identified a peropsin from one additional species, Micrathena gracilis (Walckenaer, 1805). The lack of peropsins in the other spider species investigated suggests that peropsins are in general expressed at low levels, at different developmental stages (see below), or, alternatively, that the assembled transcriptomic data were not of sufficient coverage to detect peropsin transcripts.
A number of studies have looked at peropsin tissue expression patterns in chelicerates. The most comprehensive study was in the horseshoe crab Limulus polyphemus, where peropsin had ubiquitous expression in all three eye types (median, ventral, and lateral) as well as four regions in the nervous system (Battelle et al., 2016). In the Araneae, expression studies have found slightly different patterns. Tissue-specific transcriptomes in Cupiennius salei found peropsin expressed in the CNS and all of the secondary eyes but not in the principal eyes (Eriksson et al., 2013). In contrast, in situ hybridization studies in H. adansoni found peropsin expressed in nonvisual cells bordering the distal region of the retina in the principal eye (Nagata et al., 2010). Interestingly, developmental expression studies of eyes in a third species, P. tepidariorum, found that peropsin was the only opsin transcript present during embryonic stages, particularly associated with the embryonic anlagen of both principal and secondary eyes, suggesting a developmental role as well as a function in the retina (Schomburg et al., 2015).
c-type opsin clade: canonical c-opsins
Canonical c-opsins belong to the c-type opsin clade that is composed mainly of vertebrate opsins found in visual systems and neural tissues (Porter et al., 2012; Ramirez et al., 2016). Arthropod c-type opsins, termed "pteropsins," have been identified from insects (Hill et al., 2002; Velarde etal., 2005), crustaceans (Colbourne et al., 2011), and chelicerates (Eriksson et al., 2013; Battelle et al., 2016), with tissue and transcriptomic expression studies finding pteropsins expressed in the CNS but not the retinas of the honeybee Apis mellifera Linnaeus, 1758 (Velarde et al., 2005), the horseshoe crab Limulus polyphemus (Battelle et al., 2016), and the spider Cupiennius salei (Eriksson et al., 2013). The fact that we identified only one additional spider pteropsin transcript from Parasteatoda tepidariorum highlights the difficulty in characterizing this opsin group from RNA-seq data alone.
Ancestral Araneae opsins
When comparing the opsins identified in the Araneae with the opsin complement found in Xiphosura genomes, the difference in copy number is striking. The L. polyphemus genome contains 18 opsin genes, a pattern confirmed by the genome assemblies of 2 additional horseshoe crab species (Battelle et al., 2016). In contrast, there are many fewer identified opsin genes in the Araneae genomes of Parasteatoda tepidariorum and Stegodyphus mimosarum included here. The overall view from both genomic and transcriptomic data suggests that spider visual systems utilize extremely conserved numbers of visual opsins (LWS and UVS) among species. In particular, despite evidence for gene duplication events producing three main clades of spider LWS opsins (Rhl, Rh2A, and Rh2B), as well as some additional duplication events within particular species (e.g., Leucauge venusta, Stegodyphus mimosarum), most species seem to express only two main LWS opsins, although which two genes are expressed varies by taxon (Megalomorphae and Araneomorphae). Based on the opsin data set assembled here, the ancestral Araneae opsin complement consisted of five canonical r-opsins: four visual r-opsins (two LWS opsins, one MWS opsin, and one UVS opsin) and one extraocular arthropsin. Evidence of an Rh7 opsin gene from the P. tepidariorum genome suggests that this additional opsin type was also included in the ancestral set, but more data are needed to confirm the presence of an Rh7 in other spider taxa. Additionally, the ancestral Araneae genome also contained one c-type pteropsin and one peropsin from the Tetraopsin lineage, for a total genome opsin complement of eight opsins from three major opsin lineages. Whether these numbers hold up to deeper transcriptomic and genomic scrutiny remains to be seen, but clearly there is a need to study opsin evolution in this group. This should involve not only additional sequencing but also efforts to characterize the timing and location of opsin expression in both ocular and extraocular tissues.
Conclusions and Future Directions
In this review, we have highlighted some of the tremendous structural and functional diversity offered by spider visual systems. Spiders arguably represent the most diverse group of image-forming "camera" eyes within arthropods, and their variety rivals even that found in the compound eyes of other better-studied groups such as insects and crustaceans. However, while their variety is impressive, we are still in the early days of understanding the genetic and molecular basis that underlies this diversity. Nevertheless, in synthesizing and probing available information, our efforts here have revealed that many of the genetic players implicated in eye development and phototransduction in spiders are likely to be familiar to those studying vision in other systems. This is, on one hand, not so surprising given what we know about other chelicerate and arthropod lineages but, on the other hand, quite exciting because it offers tractable inroads into substantial questions such as: How do spider eyes develop? What genes underlie adaptive changes to spider vision? When did medial and lateral eyes diverge evolutionarily, and how? And, what did the original arthropod eye look like?
Beyond simply gene-by-gene orthology, the potential for shared developmental machinery between spiders and other arthropod groups opens up many new opportunities to probe the molecular basis for variation in spider vision. For example, we might begin to predict how spiders initiate eye formation. In insect compound eyes, it is well understood that photoreceptors are the initiators of a complicated cascade of signals that mediate the development of the rest of the eye (for review, see Kumar, 2012). Here the initial photoreceptor recruits other photoreceptors, which then, in a precise order, recruit multiple layers of support cells, some of which ultimately produce the overlying cuticular lens. Based on the genetic data available thus far, it seems likely that the same general pattern of events also applies to spider eyes. If true, there are several predictions that follow from this developmental paradigm. First, if one were to knock out one of the key photoreceptor determination genes, one would expect that in spiders, just as in insects, this would lead to a loss of the entire eye, not just the loss of photoreceptors. Based on differences in gene expression observed in spiders so far, loss of dac might specifically affect the secondary eyes but not the principal eyes (Fig. 3). This line of experiments could be relatively easily performed and would verify that in spiders the development of other ocular structures is likewise initiated by photoreceptors.
A second implication of this shared developmental paradigm is that all photoreceptor populations are expected to be fully differentiated in early development and that photoreceptors cannot be added after other eye structures have developed. This means that the eyes of tiny spiderlings should already contain their full set of photoreceptors, a prediction that has received preliminary support from studies of the principal eyes (Blest and Carter, 1987) but could stand to be tested for the secondary eyes as well.
A third consequence is that one might find spiders that have photoreceptors without lenses, but it is less likely that there are spiders with lenses that lack underlying photoreceptors. This is because if photoreceptors fail to initiate the recruitment of the cuticular lens secreting cells, then the developmental plan has no mechanism to start forming a lens. On the other hand, photoreceptors could start to develop, but the differentiation or recruitment of lens-producing cells may be prevented, thus leading to a visual organ forming without a lens, perhaps similar to some of the simpler and more ancestral visual organs (Nilsson, 2009). To test this hypothesis, one could first target those spiders with vestigial eyes (e.g., some jumping spiders; Land, 1985) and/or spider groups that have lost their principal eyes (Land, 1985). One would expect that as eyes become vestigial or are lost, it is the lens that is lost ahead of the photoreceptors.
Given the parallels between early eye development genes in insects and spiders, it seems reasonable to ask whether later stages of eye development likewise show strong parallels between these groups. This consideration is particularly interesting in light of extant diversity in eye placement on the spider head (Fig. 2A). Because all secondary eyes likely develop from a pair of "eye fields," one on each side of the head, differences in their placement must be the result of migration or separation by subsequently dividing intervening cells. It is possible, then, that transcription factors regulating the development of interommatidial cells in insects could play an important evolutionary role in the diversification of spider eye placement.
Another related question is how spider eyes are focused during postembryonic development. The issue is particularly timely in the light of the recent human epidemic of myopia (Dolgin, 2015). Perhaps study of the naturally underfocused eyes of orb weavers (Land, 1985) could provide some insights into the fundamental mechanisms responsible for the development of refractive errors in camera eyes. More generally, spiders could be valuable subjects in the study of how proper focusing is established in invertebrates, a topic that thus far has largely escaped scientific investigations.
Our initial forays into phototransduction and opsin genetics in spiders also reveal many opportunities. Initial efforts should focus on better describing the temporal and spatial (e.g., ocular vs. extraocular) expression of the opsins identified here, as well as deeper or more targeted sequencing of opsins to establish the basic opsin repertoire of spiders. Of particular interest is how opsin expression segregates among eye types and how these expression patterns fit with hypotheses about eye development. Such efforts would then serve as an excellent basis for investigations of the ecological and evolutionary drivers of opsin gains, losses, and modifications. For example, jumping spiders appear to exhibit remarkable diversity in the spectral sensitivities of their principal eyes, ranging from UV-green dichromacy through trichromacy to tetrachromacy (Blest et al., 1981; Yamashita, 1985; Zurek et al., 2015). The molecular basis and evolutionary consequences of transitions between these different states, in jumping spiders and spiders more generally, remains an underexplored but exciting area for future work.
Of course, there are many additional questions that remain unanswered in spiders, ranging from the evolutionary basis of variation in field of view to the developmental control of rhabdom size and shape. Our hope is that more researchers will decide to acquaint themselves with these fascinating animals, whose visual systems have deep homology to more familiar eyes such as those of insects, crustaceans, and even vertebrates. Initial pathways into the study of their vision are provided by our knowledge of arthropod eye genes, but we expect that researchers who look more closely will be rewarded with new and exciting insights into the evolution of seeing.
The efforts of NIM and DBZ were supported through National Science Foundation (NSF) grant IOS-1557549/IOS-1734291; MLP was supported through NSF grant DEB-1556819 and EKB through NSF grant IOS-1456757. We thank Markus Friedrich, Tiffany Cook, Dan Speiser, and two anonymous reviewers for their input on earlier versions of the manuscript and the Kanehisa Laboratories for use of the KEGG fly phototransduction pathway map. We also thank Dan Speiser, a co-editor of this virtual symposium, for the opportunity to formally synthesize and expand upon the literature on the molecular basis of spider vision. Parts of this research are based on work supported by NSF grants DBF 1458641 and ABI-1062432 to Indiana University.
Arendt, D., K. Tessmar, M. I. M. de Campos-Baptista, A. Dorresteijn, and J. Wittbrodt. 2002. Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria. Development 129: 1143-1154.
Barth, F. G. 2002. A Spider's World: Senses and Behavior. Springer, Berlin.
Battelle, B. A., J. F. Ryan, K. E. Kempler, S. R. Saraf, C. E. Marten, W. C. Warren, P. J. Minx, M. J. Montague, P. J. Green, S. A. Schmidt, et al. 2016. Opsin repertoire and expression patterns in horseshoe crabs: evidence from the genome of Limulus polyphemus (Arthropoda: Chelicerata). Genome Biol. Evol. 8: 1571-1589.
Blackburn, D. C., K. W. Conley, D. C. Plachetzki, K. Kempler, B. A. Battelle, and N. L. Brown. 2008. Isolation and expression of Pax6 and atonal homologues in the American horseshoe crab, Limulus polyphemus. Dev. Dyn. 237: 2209-2219.
Blest, A. D. 1978. The rapid synthesis and destruction of photoreceptor membrane by a dinopid spider: a daily cycle. Proc. R. Soc. Biol. Sci. B 200: 463-483.
Blest, A. D. 1985a. The fine structure of spider photoreceptors in relation to function. Pp. 79-102 in Neurobiology of Arachnids. F. G. Barth, ed. Springer, Berlin.
Blest, A. D. 1985b. Retinal mosaics of the principal eyes of jumping spiders (Salticidae) in some Neotropical habitats: optical trade-offs between sizes and habitat illuminances. J. Comp. Physiol. A Sens. Neural Behav. Physiol. 157: 391-404.
Blest, A. D., and M. Carter. 1987. Morphogenesis of a tiered principal retina and the evolution of jumping spiders. Nature 328: 152-155.
Blest, A. D., and M. F. Land. 1977. The physiological optics of Dinopis subrufus L. Koch: a fish-lens in a spider. Proc. R. Soc. Biol. Sci. B 196: 197-222.
Blest, A. D., and G. D. Price. 1984. Retinal mosaics of the principal eyes of some jumping spiders (Salticidae: Araneae): adaptations for high visual acuity. Protoplasma 120: 172-184.
Blest, A. D., D. S. Williams, and L. Kao. 1980. The posterior median eyes of the dinopid spider Menneus. Cell Tissue Res. 211: 391-403.
Blest, A. D., R. C. Hardie, P. Mclntyre, and D. S. Williams. 1981. The spectral sensitivities of identified receptors and the function of retinal tiering in the principal eyes of a jumping spider. J. Comp. Physiol. A Sens. Neural Behav. Physiol. 145: 227-239.
Bond, J. E., N. L. Garrison, C. A. Hamilton, R. L. Godwin, M. Hedin, and I. Agnarsson. 2014. Phylogenomics resolves a spider backbone phytogeny and rejects a prevailing paradigm for orb web evolution. Curr. Biol. 24: 1765-1771.
Bonini, N. M., Q. T. Bui, G. L. Gray-Board, and J. M. Warrick. 1997. The Drosophila eyes absent gene directs ectopic eye formation in a pathway conserved between flies and vertebrates. Development 124: 4819-4826.
Buschbeck, E. K. 2014. Escaping compound eye ancestry: the evolution of single-chamber eyes in holometabolous larvae. J. Exp. Biol. 217: 2818-2824.
Canavesi, C, S. Long, D. Fantone, E. Jakob, R. R. Jackson, D. Harland, and J. P. Rolland. 2011. Design of a retinal tracking system for jumping spiders. Proc. SPIE 8129: 812909.
Cao, Z., Y. Yu, Y. Wu, P. Hao, Z. Di, Y. He, Z. Chen, W. Yang, Z. Shen, X. He, et al. 2013. The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods. Nat. Commun. 4: 2602.
Cheyette, B. N. R., P. J. Green, K. Martin, H. Garren, V. Hartenstein, and S. L. Zipursky. 1994. The Drosophila sine oculis locus encodes a homeodomain-containing protein required for the development of the entire visual system. Neuron 12: 977-996.
Colbourne, J. K., M. E. Pfrender, D. Gilbert, W. K. Thomas, A. Tucker, T. H. Oakley, S. Tokishita, A. Aerts, G. J. Arnold, M. K. Basu, et al. 2011. The ecoresponsive genome of Daphnia pulex. Science 331: 555-561.
Cronin, T. W., S. Johnsen, J. Marshall, and E. J. Warrant. 2014. Visual Ecology. Princeton University Press, Princeton, NJ.
Dolgin, E. 2015. The myopia boom. Nature 519: 276-278.
Eriksson, B. J., D. Fredman, G. Steiner, and A. Schmid. 2013. Characterisation and localisation of the opsin protein repertoire in the brain and retinas of a spider and an onychophoran. BMC Evol. Biol. 13: 186.
Feuda, R., F. Marletaz, M. A. Bentley, and P. W. H. Holland. 2016. Conservation, duplication, and divergence of five opsin genes in insect evolution. Genome Biol. Evol. 8: 579-587.
Foelix, R. F. 2011. Biology of Spiders. Oxford University Press, New York.
Friedrich, M. 2006. Ancient mechanisms of visual sense organ development based on comparison of the gene networks controlling larval eye, ocellus, and compound eye specification in Drosophila. Arthropod Struct. Dev. 35: 357-378.
Friedrich, M., T. Cook, and A. C. Zelhof. 2016. Ancient default activators of terminal photoreceptor differentiation in the pancrustacean compound eye: the homeodomain transcription factors Otd and Pphl 3. Curr. Opin. Insect Sci. 13: 33-42.
Futahashi, R., R. Kawahara-Miki, M. Kinoshita, K. Yoshitake, S. Yajima, K. Arikawa, and T. Fukatsu. 2015. Extraordinary diversity of visual opsin genes in dragonflies. Proc. Natl. Acad. Sci. U.S.A. 112: E1247-E1256.
Garrison, N. L., J. Rodriguez, I. Agnarsson, J. A. Coddington, C. E. Griswold, C. A. Hamilton, M. Hedin, K. M. Kocot, J. M. Ledford, and J. E. Bond. 2016. Spider phylogenomics: untangling the Spider Tree of Life. PeerJ 4: el719.
Gehring, W. J. 2002. The genetic control of eye development and its implications for the evolution of the various eye-types. Int. J. Dev. Biol. 46: 65-73.
Gehring, W. J., and K. Ikeo. 1999. Pax 6--mastering eye morphogenesis and eye evolution. Trends Genet. 15: 371-377.
Glardon, S., L. Z. Holland, W. J. Gehring, and N. D. Holland. 1998. Isolation and developmental expression of the amphioxus Pax-6 gene (AmphiPax-6): insights into eye and photoreceptor evolution. Development 125: 2701-2710.
Goodman, L. J. 1981. Organization and physiology of the insect dorsal ocellar system. Pp. 201-286 in Handbook of Sensory Physiology, H. Autrum, ed. Springer, Berlin.
Grabherr, M. G., B. J. Haas, M. Yassour, J. Z. Levin, D. A. Thompson, I. Amit, X. Adiconis, L. Fan, R. Raychowdhury, Q. Zeng et al. 2011. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat. Biotechnol. 29: 644-652.
Gulia-Nuss, M., A. B. Nuss, J. M. Meyer, D. E. Sonenshine, R. M. Roe, R. M. Waterhouse, D. B. Sattelle, J. de la Fuente, J. M. Ribeiro, K. Megy, et al. 2016. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nat. Commun. 7: 10507.
Haas, B. J., A. Papanicolaou, M. Yassour, M. Grabherr, P. D. Blood, J. Bowden, M. B. Couger, D. Eccles, B. Li, M. Lieber et al. 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat. Protoc. 8: 1494-1512.
Harzsch, S., C. H. G. Muller, and H. Wolf. 2005. From variable to constant cell numbers: Cellular characteristics of the arthropod nervous system argue against a sister-group relationship of Chelicerata and "Myriapoda" but favour the Mandibulata concept. Dev. Genes Evol. 215:53-68.
Harzsch, S., K. Vilpoux, D. C. Blackburn, D. Platchetzki, N. L. Brown, R. R. Melzer, K. E. Kempler, and B. A. Battelle. 2006. Evolution of arthropod visual systems: development of the eyes and central visual pathways in the horseshoe crab Eimulus polyphemus Linnaeus, 1758 (Chelicerata, Xiphosura). Dev. Dyn. 235: 2641-2655.
Harzsch, S., R. R. Melzer, and C. H. G. Muller. 2007. Mechanisms of eye development and evolution of the arthropod visual system: The lateral eyes of myriapoda are not modified insect ommatidia. Org. Divers. Evol. 7: 20-32.
Henze, M. J., and T. H. Oakley. 2015. The dynamic evolutionary history of pancrustacean eyes and opsins. Inlegr. Comp. Biol. 55: 830-842.
Hill, C. A., A. N. Fox, R. J. Pitts, L. B. Kent, P. L. Tan, M. A. Chrystal, A. Cravchik, F. H. Collins, H. M. Robertson, and L. J. Zwiebel. 2002. G protein-coupled receptors in Anopheles gambiae. Science 298: 176-178.
Homann, H. 1971. Die Augen der Araneae: Anatomie, Ontogenie und Bedeutung fur die Systematik (Chelicerata, Arachnida). Z. Morphol. Here 69: 201-272.
Jackson, R. R., and S. D. Pollard. 1996. Predatory behavior of jumping spiders. Annu. Rev. Entomol. 41: 287-308.
Jarman, A. P., E. H. Grell, L. Ackerman, L. Y. Jan, and Y. N. Jan. 1994. atonal is the proneural gene for Drosophila photoreceptors. Nature 369: 398-400.
Kanehisa, M., Y. Sato, M. Kawashima, M. Furumichi, and M. Tanabe. 2016. KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44: D457-D462.
Kanehisa, M., M. Furumichi, M. Tanabe, Y. Sato, and K. Morishima. 2017. KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Res. 45: D353-D361.
Kaps, F., and A. Schmid. 1996. Mechanism and possible behavioural relevance of retinal movements in the ctenid spider Cupiennius salei. J. Exp. Biol. 199: 2451-2458.
Katoh, K., and D. M. Standley. 2013. MAFFT Multiple Sequence Alignment Software version 7: improvements in performance and usability. Mol. Biol. Evol. 30: 772-780.
Katoh, K., K. Misawa, K. Kuma, and T. Miyata. 2002. MAFFT: a novel method for rapid multiple-sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30: 3059-3066.
Kistenpfennig, C. R. 2012. Rhodopsin 7 and cryptochrome--circadian photoreception in Drosophila. Ph.D. dissertation, Julius-Maximilians-Universitat Wurzburg, Wurzburg, Germany.
Koyanagi, M., T. Nagata, K. Katoh, S. Yamashita, and F. Tokunaga. 2008. Molecular evolution of arthropod color vision deduced from multiple opsin genes of jumping spiders. J. Mol. Evol. 66: 130-137.
Kozmik, Z., M. Daube, E. Frei, B. Norman, L. Kos, L. J. Dishaw, M. Noll, and J. Piatigorsky. 2003. Role of Pax genes in eye evolution: a cnidarian PaxB gene uniting Pax2 and Pax6 functions. Dev. Cell 5: 773-785.
Kumar, J. P. 2009. The molecular circuitry governing retinal determination. Biochim. Biophys. Acta Gene Regul. Mech. 1789: 306-314.
Kumar, J. P. 2010. Retinal determination: the beginning of eye development. Pp. 1-28 in Invertebrate and Vertebrate Eye Development, R. L. Cagan and T. A. Reh, eds. Elsevier, San Diego, CA.
Kumar, J. P. 2012. Building an ommatidium one cell at a time. Dev. Dyn. 241: 136-149.
Kumar, J. P., and K. Moses. 2001. Expression of evolutionarily conserved eye specification genes during Drosophila embryogenesis. Dev. Genes Evol. 211:406-414.
Land, M. F. 1969a. Movements of the retinae of jumping spiders (Salticidae: Dendryphantinae) in response to visual stimuli. J. Exp. Biol. 51:471-493.
Land, M. F. 1969b. Structure of the retinae of the principal eyes of jumping spiders (Salticidae: Dendryphantinae) in relation to visual optics. J. Exp. Biol. 51: 443-70.
Land, M. F. 1981. Optics and vision in invertebrates. Pp. 471-592 in Comparative Physiology and Evolution of Vision in Invertebrates, H. Autrum, ed. Springer, Berlin.
Land, M. F. 1985. The morphology and optics of spider eyes. Pp. 53-78 in Neurobiology of Arachnids, F. G. Barth, ed. Springer, Berlin.
Land, M. F., and F. G. Barth. 1992. The quality of vision in the ctenid spider Cupiennius salei. J. Exp. Biol. 164: 227-242.
Laughlin, S., A. D. Blest, and S. Stowe. 1980. The sensitivity of receptors in the posterior median eye of the nocturnal spider, Dinopis. J. Comp. Physiol. A Sens. Neural Behav. Physiol. 141: 53-65.
Liu, K., T. J. Warnow, M. T. Holder, S. M. Nelesen, J. Yu, A. P. Stamatakis, and C. R. Linder. 2012. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. Syst. Biol. 61: 90-106.
Liu, Z. Y., and M. Friedrich. 2004. The Tribolium homologue of glass and the evolution of insect larval eyes. Dev. Biol. 269: 36-54.
Long, S. M. 2016. Spider brain morphology and behavior. Ph.D. dissertation. University of Massachusetts Amherst, Amherst.
Loria, S. F., and L. Prendini. 2014. Homology of the lateral eyes of Scorpiones: a six-ocellus model. PLoS One 9: 30.
Mardon, G., N. M. Solomon, and G. M. Rubin. 1994. Dachshund encodes a nuclear-protein required for normal eye and leg development in Drosophila. Development 120: 3473-3486.
McDonald, E. C., B. Xie, M. Workman, M. Charlton-Perkins, D. A. Terrell, J. Reischl, E. A. Wimmer, B. A. Gebelein, and T. A. Cook. 2010. Separable transcriptional regulatory domains within Otd control photoreceptor terminal differentiation events. Dev. Biol. 347: 122-132.
Meadors, S., C. McGuiness, F. A. Dodge, and R. B. Barlow. 2001. Growth, visual field, and resolution in the juvenile Limulus lateral eye. Biol. Bull. 201: 272-274.
Miether, S. T., and J. A. Dunlop. 2016. Lateral eye evolution in the arachnids. Arachnology 17: 103-119.
Moriya, Y., M. Itoh, S. Okuda, A. C. Yoshizawa, and M. Kanehisa. 2007. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35: W182-W185.
Nagata, T., M. Koyanagi, H. Tsukamoto, and A. Terakita. 2010. Identification and characterization of a protostome homologue of peropsin from a jumping spider. J. Comp. Physiol. A Sens. Neural Behav. Physiol. 196: 51-59.
Nagata, T., M. Koyanagi, H. Tsukamoto, S. Saeki, K. Isono, Y. Shichida, F. Tokunaga, M. Kinoshita, K. Arikawa, and A. Terakita. 2012. Depth perception from image defocus in a jumping spider. Science 335: 469-471.
Nilsson, D. E. 2009. The evolution of eyes and visually guided behaviour. Philos. Trans. R. Soc. Biol. Sci. B 364: 2833-2847.
Nilsson, D. E., and A. Kelber. 2007. A functional analysis of compound eye evolution. Arthropod Struct. Dev. 36: 373-385.
Nilsson, D. E., and R. Modlin. 1994. A mysid shrimp carrying a pair of binoculars. J. Exp. Biol. 189: 213-236.
Pattengale, N. D., M. Alipour, O. R. Bininda-Emonds, B. M. Moret, and A. Stamatakis. 2010. How many bootstrap replicates are necessary? J. Comput. Biol. 17: 337-354.
Paulus, H. F. 1979. Eye structure and the monophyly of the Arthropoda. Pp. 299-383 in Arthropod Phylogeny, A. P. Gupta, ed. Van Nostrand Reinhold, New York.
Paulus, H. F. 2000. Phylogeny of the Myriapoda-Crustacea-Insecta: a new attempt using photoreceptor structure. J. Zool. Syst. Evol. Res. 38: 189-208.
Pignoni, F., B. R. Hu, K. H. Zavitz, J. A. Xiao, P. A. Garrity, and S. L. Zipursky. 1997. The eye-specification proteins so and eya form a complex and regulate multiple steps in Drosophila eye development. Cell 91: 881-891.
Pineda, D., J. Gonzalez, P. Callaerts, K. Ikeo, W. J. Gehring, and E. Salo. 2000. Searching for the prototypic eye genetic network: Sine oculis is essential for eye regeneration in planarians. Proc. Natl. Acad. Sci. U.S.A. 97: 4525-4529.
Platnick, N. I. 2017. World Spider Catalog, version 18.0. Natural History Museum, Bern, Switzerland.
Porter, M. L., J. R. Blasic, M. J. Bok, E. G. Cameron, T. Pringle, T. W. Cronin, and P. R. Robinson. 2012. Shedding new light on opsin evolution. Proc. R. Soc. Biol. Sci. B 279: 3-14.
Ramirez, M. D., A. N. Pairett, M. S. Pankey, J. M. Serb, D. I. Speiser, A. J. Swafford, and T. H. Oakley. 2016. The last common ancestor of most bilaterian animals possessed at least nine opsins. Genome Biol. Evol. 8: 3640-3652.
Raven, P. H., and D. K. Yeates. 2007. Australian biodiversity: threats for the present, opportunities for the future. Aust. J. Entom. 46: 177-187.
Riechert, S. E., and T. Lockley. 1984. Spiders as biological control agents. Annu. Rev. Entomol. 29: 299-320.
Samadi, L., A. Schmid, and B. J. Eriksson. 2015. Differential expression of retinal determination genes in the principal and secondary eyes of Cupiennius salei Keyserling (1877). EvoDevo 6: 16.
Sanggaard, K. W., J. S. Bechsgaard, X. Fang, J. Duan, T. F. Dyrlund, V. Gupta, X. Jiang, L. Cheng, D. Fan, Y. Feng, et al. 2014. Spider genomes provide insight into composition and evolution of venom and silk. Nat. Commun. 5: 3765.
Schmitz, O. J. 2008. Effects of predator hunting mode on grassland ecosystem function. Science 319: 952-954.
Schmitz, O. J., A. Beckerman, P., and K. M. O'Brien. 1997. Behaviorally mediated trophic cascades: effects of predation risk on food web interactions. Ecology 78: 1388-1399.
Schomburg, C, N. Turetzek, M. I. Schacht, J. Schneider, P. Kirfel, N. M. Prpic, and N. Posnien. 2015. Molecular characterization and embryonic origin of the eyes in the common house spider Parasteatoda tepidariorum. EvoDevo 6: 15.
Shultz, J. W. 2007. A phylogenetic analysis of the arachnid orders based on morphological characters. Zool. J. Linn. Soc. 150: 221-265.
Smith, K., C. Ridings, F. A. Dodge, and R. B. Barlow. 2002. Development of the lateral eye of juvenile Limulus. Biol. Bull. 203: 222-223.
Speiser, D. I., M. S. Pankey, A. K. Zaharoff, B. A. Battelle, H. D. Bracken-Grissom, J. W. Breinholt, S. M. Bybee, T. W. Cronin, A. Garm, A. R. Lindgren, et al. 2014. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC Bioinformatics 15: 350.
Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
Stamatakis, A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313.
Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 57: 758-771.
Strausfeld, N. J., and F. G. Barth. 1993. Two visual systems in one brain: neuropils serving the secondary eyes of the spider Cupiennius salei. J. Comp. Neurol. 328: 43-62.
Strausfeld, N. J., P. Weltzien, and F. G. Barth. 1993. Two visual systems in one brain: neuropils serving the principal eyes of the spider Cupiennius salei. J. Comp. Neurol. 328: 63-75.
Strausfeld, N. J., X. Y. Ma, G. D. Edgecombe, R. A. Fortey, M. F. Land, Y. Liu, P. Y. Cong, and X. G. Hou. 2016. Arthropod eyes: the early Cambrian fossil record and divergent evolution of visual systems. Arthropod Struct. Dev. 45: 152-172.
Taylor, L. A., E. B. Maier, K. J. Byrne, Z. Amin, and N. I. Morehouse. 2014. Colour use by tiny predators: Jumping spiders show colour biases during foraging. Anim. Behav. 90: 149-157.
Taylor, L. A., Z. Amin, E. B. Maier, K. J. Byrne, and N. I. Morehouse. 2015. Flexible color-learning in an invertebrate predator: Habronatlus jumping spiders can learn to prefer or avoid the color red when foraging. Behav. Ecol. 27: 520-529.
Terrell, D., B. Xie, M. Workman, S. Mahato, A. Zelhof, B. Gebelein, and T. Cook. 2012. OTX2 and CRX rescue overlapping and photoreceptor-specific functions in the Drosophila eye. Dev. Dyn. 241: 215-228.
Turnbull, A. L. 1973. Ecology of the true spiders (Araneomorphae). Annu. Rev. Entomol. 18: 305-348.
Velarde, R. A., C. D. Sauer, K. K. Walden, S. E. Fahrbach, and H. M. Robertson. 2005. Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain. Insect Biochem. Molec. Biol. 35: 1367-1377.
Vopalensky, P., and Z. Kozmik. 2009. Eye evolution: common use and independent recruitment of genetic components. Philos. Trans. R. Soc. Biol. Sci. B 364: 2819-2832.
Waddington, C. H., and M. M. Perry. 1960. The ultrastructure of the developing eye of Drosophila. Proc. R. Soc. Biol. Sci. B 153: 155-178.
Walla, P., F. G. Barth, and E. Eguchi. 1996. Spectral sensitivity of single photoreceptor cells in the eyes of the ctenid spider Cupiennius salei Keys. Zool. Sci. 13: 199-202.
Waterman, T. H. 1954. Relative growth and the compound eye in Xiphosura. J. Morphol. 95: 125-158.
Williams, D. S., and P. Mclntyre. 1980. The principal eyes of a jumping spider have a telephoto component. Nature 288: 578-580.
Yamashita, S. 1985. Photoreceptor cells in the spider eye: spectral sensitivity and efferent control. Pp. 103-117 in Neurobiology of Arachnids, F. G. Barth, ed. Springer, New York.
Yamashita, S., and H. Tateda. 1978. Spectral sensitivities of the anterior median eyes of the orb web spiders, Argiope bruennichii and A. amoena. J. Exp. Biol. 74: 47-57.
Yang, X., M. Weber, N. ZarinKamar, N. Posnien, F. Friedrich, B. Wigand, R. Beutel, W. G. M. Damen, G. Bucher, M. Klingler, et al. 2009. Probing the Drosophila retinal determination gene network in Tribolium. II. The Pax6 genes eyeless and twin of eyeless. Dev. Biol. 333: 215-227.
Zhou, Q. X., D. F. DeSantis, M. Friedrich, and F. Pignoni. 2016. Shared and distinct mechanisms of atonal regulation in Drosophila ocelli and compound eyes. Dev. Biol. 418: 10-16.
Zopf, L. M., A. Schmid, D. Fredman, and B. J. Eriksson. 2013. Spectral sensitivity of the ctenid spider Cupiennius salei. J. Exp. Biol. 216: 4103-4108.
Zurek, D. B., T. W. Cronin, L. A. Taylor, K. Byrne, M. L. G. Sullivan, and N. I. Morehouse. 2015. Spectral filtering enables trichromatic vision in colorful jumping spiders. Curr. Biol. 25: R403-R404.
NATHAN I. MOREHOUSE (1 *), ELKE K. BUSCHBECK (1), DANIEL B. ZUREK (1), MIREILLE STECK (2), AND MEGAN L. PORTER (2)
(1) Department of Biological Sciences, University of Cincinnati, Cincinnati, Ohio 45221; and (2) Department of Biology, University of Hawai'i at Manoa, Honolulu, Hawai'i 96822 Received 17 March 2017; Accepted 13 June 2017; Published online 11 October 2017.
(*) To whom correspondence should be addressed. E-mail: firstname.lastname@example.org.
Abbreviations: AL, anterior lateral; AM, anterior median; BLAST. Basic Local Alignment Search Tool; CNS, central nervous system; KAAS, KEGG Automatic Annotation Server; KEGG, Kyoto Encyclopedia of Genes and Genomes; LWS, long wavelength sensitive; MAFFT, Multiple Alignment using Fast Fourier Transform; MWS. middle wavelength sensitive; PL. posterior lateral; PM, posterior median; RAxML, Randomized Axelerated Maximum Likelihood; UVS, ultraviolet sensitive.
Online enhancements: supplemental material.
Table 1 Species included in analyses of spider opsin evolution and phototransduction, including information on taxonomy, data source, and reference Order Family Species Ixodida Ixodidae Ixodes scapularis Scorpiones Buthidae Mesobuthus martensii Araneae Agelenidae Agelenopsis emertoni Araneae Antrodiaetidae Aliatypus coylei Araneae Aranaeidae Micrathena gracilis Araneae Ctenidae Cupiennius salei Araneae Deinopidae Deinopis longipes Araneae Dictynidae Cicurina vibora Araneae Eresidae Stegodyphus mimosarum Araneae Euctenizidae Aptostichus stephencolberti Araneae Salticidae Habronattus ustulatus Araneae Salticidae Hasarius adansoni Araneae Salticidae Plexippus paykulli Araneae Tetragnathidae Leucauge venusta Araneae Theraphosidae Aphonopelma iviei Araneae Theridiidae Parasteatoda tepidariorum Araneae Thomisidae Misumenoides formosipes Order Data type Accession numbers Ixodida Genome XM_002408275.1, XP_002408319 Scorpiones Genome Genes mined as in Battelle et al. 2016 Araneae RNA-seq PRJNA254752, SRX652511 Araneae RNA-seq PRJNA254752, SRX652492 Araneae RNA-seq PRJNA254752, SRX652498 Araneae RNA-seq CCP46949-CCP46951. CC061973-CC061975 Araneae RNA-seq PRJNA254752, SRX652495 Araneae RNA-seq PRJNA254752, SRX652499 Araneae Genome KFM62776, KFM67509, KFM75836, KFM77099, KFM77100, KFM77102 Araneae RNA-seq PRJNA254752, SRX652490 Araneae RNA-seq PRJNA267594, SRX763246 Araneae cDNA AB251846-AB251848, AB506462, AB525082 Araneae cDNA AB251849-AB251851 Araneae RNA-seq PRJNA236497, SRX451005 Araneae RNA-seq PRJNA254752, SRX652487 Araneae Genome assembly GCF_000365465.1 Araneae RNA-seq PRJNA306047, SRX1560150 Order Reference Ixodida Gulia-Nuss et al., 2016 Scorpiones Cao et al., 2013 Araneae Bond et al., 2014 Araneae Bond et al., 2014 Araneae Bond et al., 2014 Araneae Eriksson et al., 2013; Zopf et al., 2013 Araneae Bond et al., 2014 Araneae Bond et al., 2014 Araneae Sanggaard et al., 2014 Araneae Bond et al., 2014 Araneae Araneae Koyanagi et al., 2008; Nagm et al., 2010, 2012, Araneae Koyanagi et al., 2008 Araneae Garrison et al., 2016 Araneae Bond et al., 2014 Araneae Schomburg et al., 2015 Araneae Garrison et al., 2016
|Printer friendly Cite/link Email Feedback|
|Author:||Morehouse, Nathan I.; Buschbeck, Elke K.; Zurek, Daniel B.; Steck, Mireille; Porter, Megan L.|
|Publication:||The Biological Bulletin|
|Date:||Aug 1, 2017|
|Previous Article:||Opsins and Their Expression Patterns in the Xiphosuran Limulus polyphemus.|
|Next Article:||Radiolar Eyes of Serpulid Worms (Annelida, Serpulidae): Structures, Function, and Phototransduction.|