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Metabolomic approach to key metabolites characterizing postmortem aged loin muscle of Japanese Black (Wagyu) cattle.


Skeletal muscle metabolites such as amino acids, peptides, nucleotide-related products, fatty acids, and sugars contribute to meat quality as flavor components. Postmortem protein degradation generates free amino acids and peptides in the muscles of cattle [1]. These compounds contribute to the development of meat flavor in beef by Maillard reaction in cooked foods, one of the most important molecular events for flavor formation, which occurs primarily between amino acids and reducing monosaccharides [2]. In pork, inosine 5'-monophosphate (IMP), ribose, and glucose increase "meaty" aroma, while IMP, ribose, and glucose 6-phosphate increase "roasted" aroma [3].

Meanwhile, nucleotide triphosphates such as adenosine triphosphate (ATP) and guanosine triphosphate (GTP) are broken down during postmortem meat aging, generating taste-associated products including IMP and guanosine monophosphate (GMP) [4]. Moreover, lactic acid accumulation caused by glycolysis results in a decline in muscle pH [5]. This indirectly affects water-holding capacity, color, and tenderness of meat through protein denaturation and protease inactivation. Thus, most of the low-molecular-weight water-soluble metabolites present in skeletal muscle are generated, and some of these are further converted to meat flavor components during meat aging and cooking processes. Despite the importance of these water-soluble compounds in meat, metabolomic changes by which these metabolites are generated in beef have been poorly explored.

A comprehensive understanding of the changes that occur in postmortem muscle metabolites could provide key information on how to control the generation of key compounds for development of meat quality. Metabolomic approaches to beef cattle have been applied to exploration of metabolites related to sensory characteristics and beef flavor [6,7], differences in cattle feeding systems [8], and the storage conditions of minced beef [9] using liquid chromatography-mass spectrometry (LC-MS), gas chromatography (GC)-MS, and headspace solid phase microextraction-GC/MS methodologies. A metabolomic study on postmortem beef aging, using reversephase high-performance (HP) LC-MS-based metabolomics, has revealed involvement of metabolites including acyl carnitines and amino acids in beef color stability and lipid oxidation during postmortem aging [10]. The HPLC-MS-based technique has the advantage of detecting semipolar metabolites but not polar metabolites such as ATP and organic acids, due to the higher retention on less charged compounds rather than charged compounds. Another metabolomic study of beef aging using nuclear magnetic resonance (NMR) spectroscopy obtained a total of 25 annotated metabolites in Japanese Black (JB; a Japanese Wagyu breed) cattle, and demonstrated that NMR-based metabolomics can evaluate multiple parameters related to the beef-quality attributes of this breed [11].

In pork analysis, capillary electrophoresis time-of-flight MS (CE-TOFMS) was previously employed for the analysis of changes in the metabolomic profiles of porcine muscles during postmortem aging, revealing the relevant pathways that generate metabolites associated with pork quality, including the postmortem energy metabolism and protein degradation pathways [12]. The results demonstrated the efficacy of CE-TOFMS technique for such studies based on its broader coverage and the identification of water-soluble, charged metabolites.

JB cattle are well known for their genetically superior intramuscular fat depot, which makes beef tender and gives JB beef the high marbling score that is so prized. In the present study, to explore the key metabolites and pathways in postmortem beef aging, changes in profiles of water-soluble metabolites during postmortem aging of JB beef were comprehensively analyzed for the first time. The CE-TOFMS technique was used for the analysis of water-soluble charged metabolites including free amino acids, organic acids, and short-chain peptides in the lean portion of JB cattle Longissimus thoracis (LT) muscle.


Animals and muscle samples

The animals were cared for as outlined in the Guide for the Care and Use of Experimental Animals (Animal Care Committee of the NARO Institute of Livestock and Grassland Science [NILGS]), and this committee approved the study (approval number 1611C010). All efforts were made to minimize suffering of the animals. A portion of the LT muscles at the 8th to 9th thoracic vertebrae was dissected from three JB steers aged 28 months (632 to 739 kg) at 30 min after slaughter at the slaughter house of the NILGS. After intramuscular fat was carefully removed from the muscle samples, several pieces of small lean-muscle were picked up from four or five locations in the core part (approx. 2-cm diameter) of each LT muscle at time 0 postmortem. To minimize the deterioration of metabolites, mincing of the muscle samples was avoided. After overnight hanging of the carcasses at 2[degrees]C, the remaining LT muscles were excised out, and lean muscle samples were taken from the LT muscles at 24 h (1 d); then, after continuous storage of the LT muscles at 2[degrees]C, further muscle pieces were picked up at 336 h (14 d) postmortem. The mean values of the crude fat, protein, and moisture contents of the LT muscle block samples were 365.3 mg/g (36.5%), 141.7 mg/g (14.2%), and 476.7 mg/g (47.7%), respectively. After collection from the carcasses, intramuscular fat was manually removed from the muscle tissues. All the subsequent small pieces of lean muscle were collected and frozen in liquid nitrogen and thereafter stored at -80[degrees]C until use. Muscle pH was measured according to the method described previously [12].

Sample preparation for CE-TOFMS

The frozen muscle pieces (46.3 to 90.0 mg) were immediately plunged into a solution (50% acetonitrile, 10 [micro]M Internal Standard Solution 1 [Human Metabolome Technologies, Tsuruoka, Japan]) at 0[degrees]C and homogenized twice at 1,500 rpm for 120 s. The samples were then centrifuged at 2,300xg for 5 min at 4[degrees]C. The upper layer solution was centrifugally filtered through a Millipore 5-kDa cutoff membrane. The filtrate was lyophilized, suspended in Milli-Q water and analyzed by CETOFMS.

Instrumentation and conditions of CE-TOFMS

CE-TOFMS was carried out using an Agilent CE Capillary Electrophoresis System equipped with an Agilent 6210 Timeof-Flight mass spectrometer, Agilent 1100 isocratic HPLC pump, Agilent G1603A CE-MS adapter kit, and Agilent G1607A CE-ESI-MS sprayer kit (Agilent Technologies, Waldbronn, Germany). The analytic conditions were the same as those used in a previous study [12]. The spectrometer was scanned from m/z 50 to 1,000.

Data analysis of CE-TOFMS results

Raw data obtained by CE-TOFMS were processed with MasterHands, as in our previous study [12]. Among all the detected compounds, the compounds annotated in the Human Metabolome Database (ver. 4.0, or the Kyoto encyclopedia of genes and genomes database (KEGG;, a bioinformatics resource, were further analyzed. The relative contents of the annotated compounds over time were determined by comparing the peaks of compounds with the same MS properties in the analysis. To compare the relative contents of the compounds between time points, peak areas were normalized by those of the internal standards (methionine sulfone for cations, (+)-camphor-10-sulfonic acid for anions) and by sample weight. The resultant relative area values but not the absolute contents were further normalized by the content of methylhistidine (MH; sum of 1 MH and 3 MH, 3 MH is a skeletal muscle-specific metabolite [13]) which is not affected by postmortem aging time in pork (unpublished data). The contents of major metabolites such as glycolytic products, amino acids, and ATP degradation products were determined using commercially available standards. The abundance of each compound used for comparative analysis was set as 0 when the content of the compound was under detection. The annotated compounds were categorized using the KEGG database, to extract the terms that represent molecular metabolic events associated with the categorized compounds. File conversion of raw MS data, peak picking, reduction of noise, and alignment of data for multiple samples were conducted as previously described [12].

Statistical analyses

The normalized relative content values were used for the data analyses. Cluster 3.0 ( cluster/software.htm) combined with Java TreeView software ( was used for hierarchical cluster analysis (HCA). The principal component analysis (PCA), analysis of variance (ANOVA), and multiple comparison test were conducted using SAS Excel Add-In 6.1 for Microsoft Office ( For PCA, all the relative values were transformed into Z-scores, to calculate the principal component (PC) scores and loading values.

To assess the significance of differences between the time points for each compound in multiple comparisons, statistical analysis was performed using R 3.5.1 (http://cran.r-project. org), using an R package for the analysis of significant gene expression profile differences over time (maSigPro release 3.7; maSigPro.html). An adjusted p-value (maSigPro P) <0.050, corresponding to a false discovery rate (FDR) <0.10 and p-values <0.05 were considered statistically significant.

Data were also statistically analyzed using one-way ANOVA for each compound. The model included the fixed effects of postmortem storage time and a random effect of the individual animal, considering the factor of storage time to be within-subject. Data were considered significantly different if p<0.05 in a post hoc multiple test using Fishers least significant difference test (LSD) after ANOVA. The pH value was also analyzed by ANOVA, followed by a post hoc multiple test with the LSD.


Quantitative analyses of postmortem changes in metabolites of LT muscle in JB steers by CE-TOFMS

To clarify the metabolic characteristics and factors responsible for metabolic events in the LT muscle at each time point, metabolomic analyses using CE-TOFMS were conducted. In total, 197 compounds were detected in the beef samples, among which 171 compounds (117 cations and 54 anions) were annotated. Other peaks corresponding to a total of 26 compounds were also detected but could not be determined due to a lack of structural information. Among the 171 annotated metabolites, a total of 70 compounds were absolutely quantified using standard compounds (Table 1). Of the 70 compounds, the contents of 31 increased over time, while the contents of 14 decreased (p<0.05); the rest showed no difference between 0 d and 14 d, with or without change at 1 d. Although there were 110 metabolites to be potentially quantified by the present methodology, 40 of those were not detected (data not shown). Charged metabolites associated with glycolytic metabolism and the citric acid cycle (i.e., the tricarboxylic acid cycle) are not easily detected by LC-MS- or GC-MS-based methods [10], but they were successfully quantified using the present approach.

According to the results regarding the glycolytic pathway, the lactic acid content increased significantly within the first 24 hrs (p = 0.02). In contrast, the fructose 1,6-bisphosphate (F-1,6-dP) content decreased over the first 24 hrs, indicating the progress of glycolysis in the LT muscle in the early postmortem period. On the other hand, ATP degradation, temporary IMP accumulation at 1 d, and the subsequent accumulation of hypoxanthine and inosine progressed in a coordinated manner during aging. Concomitantly, the muscle pH, starting at 6.20 at 1 h postmortem, declined to 5.33 within the first 24 hrs, and thereafter remained at the ultimate pH value (5.36) until 14 d postmortem (Figure 1). The contents of 15 protein constituent amino acids significantly increased in the postmortem period (Table 1; p<0.05).

Characterization of aging beef samples by HCA and PCA

To characterize the muscle samples at each time point using the metabolomic profiles, the resultant profiles were applied to HCA and PCA analyses using all the metabolites detected and annotated. Before the comparison, it was confirmed that the MH content was not significantly affected by aging time (p>0.05 in ANOVA), which indicates its usefulness as an internal standard of postmortem lean muscle content (data not shown). The heatmap resulting from HCA clearly showed that the metabolomic composition of the beef water-soluble compounds was separated into several categories according to the pattern of changes over time (Figure 2). In other words, the samples were grouped by the pattern of postmortem changes in water-soluble compounds detected in the lean portion of JB bee M

The PCA results also showed that the metabolomic profile of the beef could be grouped according to the first two PCs, PC1, and PC2 (Figure 3). The cumulative proportions of PC1, PC2, and PC3 were 40.4%, 20.9%, and 11.9%, respectively. The plot patterns of the beef samples at D0, D1, and D14 revealed a clear association of PC1 with postmortem muscle aging. In particular, the D0 and D14 samples were segregated from each other by PC1, with the intermediate D1 samples as a transient state. ken at 0, 24 h (1 d), and 168 h (14 d) postmortem, respectively.

The loading scores of cysteine-glutathione disulfide (CysGTdS), thiamine, nicotinamide, gluconic acid, Cys, gluconic acid, and hypoxanthine were highly positive for PC1 (Table 2). The DO and D14 samples were plotted in the negative and positive areas of PC1, respectively, indicating that the JB beef samples at day 14 postmortem were characterized by an abundance of the above-mentioned compounds, such as thiamine and Cys-GTdS. In addition, PC1 was negatively attributed to oxidized form of nicotinamide adenine dinucleotide (NAD+), F-1,6-dP, glycerol 3-phosphate, citric acid, malic acid, cytidine triphosphate, GTP, and uridine diphosphate (UDP)-linked compounds, indicating that these compounds were abundant in the muscle at slaughter but later decreased. On the other hand, the beef samples at D1 were grouped and plotted in a negative area of PC2 compared to those at D0 and D14 (Figure 3). The compounds including Gly, urea, betaine, glutathione, and reduced form of nicotinamide adenine dinucleotide (NADH) showed positive loading scores, while compounds such as GMP, uric acid, spermine, uridine monophosphate (UMP), IMP, adenosine monophosphate (AMP), and inosine diphosphate showed negative loading scores for PC2(Table 2).

Highlighted metabolic pathways and compounds in postmortem LT muscle of JB steers

In addition to absolute quantification of the major metabolites, the relative contents of the annotated compounds were also determined to elucidate the biological events associated with the annotated compounds including those whose standard compound was not available. By evaluating the significance of postmortem changes in the metabolite contents in the global JB muscle metabolome, it would be possible to extract not only the relevant metabolic pathways that were activated in the beef samples during postmortem aging, but also significant metabolites that characterize the aged JB beef. To this end, maSigPro software (a statistical R-based package) was employed to test multiple comparisons against changes in the relative contents of the annotated metabolites of the beef, including the absolutely quantified compounds. Consequently, a total of 89 compounds showing significant increases or decreases during postmortem aging (adjusted p<0.05, FDR<0.10) were extracted, of which the top 50 compounds are shown in Supplementary Table S1. Of those, not only 16 amino acids, but also the contents of 6 dipeptides also increased over the duration (Table 3). In addition to compounds related to the glycolytic pathway (dihydroxyacetone phosphate [DHAP], F-1,6-dP, lactic acid) and purine metabolism (AMP, ATP, GMP, hypoxanthine, IP, etc.), other compounds, including 6-phosphogluconic acid (6PG), sedoheptulose 7-phosphate (S7P), citric acid, fumaric acid, and NAD+, showed changes in their contents in the postmortem period.

Using the KEGG database, all the significantly changed compounds (p<0.05) were assigned to functional pathways representing postmortem aging of the LT muscle. We extracted the pathways in which at least three compounds changed significantly (p<0.05); these included the citric acid cycle, glycerophospholipid metabolism, cysteine metabolism, protein digestion and absorption, nicotinate and nicotinamide metabolism, purine metabolism, pentose phosphate metabolism, and polyamine metabolism pathways (Table 3). It is therefore suggested that these metabolic pathways are prominent in the lean portion of JB beef during postmortem aging.

In addition to the above-mentioned metabolites related to beef quality, changes over time were observed in the contents of key metabolites related to nutrition and beef aging: the relative contents of gluconic acid, gluconolactone, Cys-GTdS and coenzyme precursors including pyridoxamine 5'-phosphate (PMP) and thiamine significantly increased during postmortem aging of the beef (adjusted p<0.05, FDR<0.10; Figure 4). Moreover, the relative contents of 6PG, 5-oxoproline, and N-acetyllysine increased, while that of phosphoribosyl pyrophosphate (PRPP) decreased during beef aging (adjusted p<0.05, FDR<0.10; Supplementary Table S1).


Major metabolic pathways observed during postmortem aging of the LT muscle in JB steers

In the present study, the contents of the metabolites in the lean LT muscle at different stages of postmortem aging were determined. Comparison of the contents of the annotated compounds among the postmortem time points by HCA, PCA, and the multiple comparison test revealed changes in numerous metabolites, including glycolytic products, energy metabolism-related compounds, purine and pyrimidine-related compounds, and amino acids. The pathways related to the glycolysis, purine metabolism, protein degradation, pentose pathway, and nicotinamide metabolism in the KEGG database were extracted as the molecular biological events associated with the significantly changed compounds (p< 0.05) during the postmortem aging of the LT muscle.

To focus on the changes in the lean muscle metabolites, the potential contaminating influence of intramuscular fat was excluded by taking only the lean muscle portion as the samples, which was followed by normalization with MH, the content of which did not differ among the aging time points. As a result, the predicted postmortem biochemical events observed during pork aging [12], such as increases in amino acids and ATP degradation products, were observed (Table 3). This means that the MH-based CE-TOFMS analysis of the metabolite contents in lean muscle portion of Wagyu cattle was not affected by variation of the intramuscular fat content of the cattle. The observations confirmed that the present muscle samples underwent a typical postmortem aging process [5], and that postmortem metabolic changes in bovine LT muscle are very similar to those in porcine muscle [12].

Protein digestion and absorption

During postmortem aging of the LT muscle, 16 free amino acids increased (Table 3), which indicates that the muscle proteins were degraded as demonstrated in the progress of porcine [12,14] and bovine muscle proteolysis [15-17]. This protein degradation process is reemphasized by the elevated contents of several dipeptides such as Glu-Glu (p<0.05), a dipeptide sequence frequently present in troponin-T [15,18] that is easily degraded in postmortem bovine muscles [16,17]. The accumulation of amino acids during postmortem aging was also observed in beef of AngusxSimmental crossbred steers [10]. Taken together, these results suggest that postmortem proteolysis generated free amino acids via the breakdown of muscle proteins to dipeptides after 1 d. It is also likely that endoproteinases such as calpains and aminopeptidases [14,19] played principal roles in the generation of most of the amino acids present after 1 d postmortem. The Asp and Glu thus generated might participate in a series of reactions to provide substrates for the citric acid cycle as glucogenic amino acids in the postmortem muscle [20].

The progress of muscle proteolysis is expected to contribute to postmortem tenderization in the JB loin beef, as shown in past beef studies [21]. The generation of amino acids and dipeptides also contributes to the improvement of beef flavor. The addition of monosodium glutamate to beef soup enhanced its "salty" or "potato" flavors in a consumer sensory examination [22]. Moreover, some dipeptides such as Glu-Glu are recognized to enhance umami taste of 0.02% IMP [23], suggesting that these proteolytic products are able to improve taste and flavor of beef.

Citric acid cycle and pyruvate metabolism

Compounds involved in the citric acid cycle and pyruvate metabolism were decreased in the postmortem aging period (adjusted p<0.05, FDR<0.10) (Table 3). Lactic acid is a final product of glycolysis, emphasizing the progress of glycolysis in the postmortem LT muscle. The relative contents of citric acid, fumaric acid, and malic acid in the citric acid cycle decreased (adjusted p<0.05, FDR<0.10), suggesting that these compounds were supplied as a source of carbon chains for maintenance of homeostasis. DHAP may have been generated by the degradation of F-1,6-dP, which would account for the increase in DHAP in this study. DHAP is an important metabolite as a source of triglyceride synthesis and the pentose phosphate pathway [20], and thus the change in DHAP content might influence multiple metabolic pathways.

Pentose phosphate pathway, nicotinate and nicotinamide metabolism

It is possible that the decrease in DHAP content influences changes in the contents of pentose phosphate pathway metabolites such as S7P and ribulose 5-phosphate (Ru5P). In fact, the S7P and Ru5P contents significantly increased (adjusted p<0.05, FDR<0.10) (Table 3). On the other hand, NADPH was not detected in this study. DHAP is made by coupling reactions with the pentose phosphate pathway as an energy source for synthesis of fatty acid and cholesterol [20]. Although the reason why neither NADPH nor NADP+ was detected remains unclear, previously those compounds were successfully detected by CE-TOFMS in pork [12]. There might be a specific difference between beef and pork in the role of NADPH/ NADP+ in energy metabolism. Another energy-supplying compound, NADH, was detected, but its content did not change. In contrast, the NAD+ content decreased, possibly due to degradation to nicotinamide, the content of which increased during the aging period. The changes in the ratio of NADH/NAD+ were very similar to those in pork [12].

Glycerophospholipid metabolism

This is the first study to report increases in choline and CDP-choline during postmortem aging of beef. Both choline and CDP-choline are nutritionally essential components as methyl-group donors in food materials, similarly to eggs [24]. These metabolites are categorized as part of glycerophospholipid metabolism, and such changes could reflect a shift of the metabolism toward a supply of energy source compounds in glycolytic metabolism where the final product is ATP. It is likely that the increases in choline and CDP-choline were linked with a metabolic shift toward G3P generation via DHAP by degradation of phosphatidyl choline, a plasma membrane component. Likewise, an increase in ethanolamine (data not shown) and its phosphate was also observed, possibly due to degradation of phosphatidyl ethanolamine, another component of the plasma membrane.

Purine metabolism

A series of changes in metabolites associated with purine metabolism were also observed. This indicates that there was a dynamic change in the nucleotide metabolite profile over time during postmortem aging. Thus, ATP was degraded into xanthine or hypoxanthine via IMP or inosine generation, and GTP was degraded into GMP and guanosine in parallel during the aging process, resulting in increased contents of uric acid and PRPP. The 5'-ribonucleotides, AMP, IMP, and GMP, are all important in meat flavor perception, as they have umami taste characteristics [25] as well as an enhancing effect on umami taste. IMP and hypoxanthine are especially associated with meaty and bitter flavors in pork, respectively [26]. Thus, the catabolic reactions of purine metabolism contribute to the accumulation of taste-related compounds such as IMP in beef after appropriate aging periods.

Characteristic compounds in postmortem aging of LT muscle in JB steers

During postmortem aging of beef in the present study, we clearly observed significant changes in metabolites that have the potential to influence human health. Some of these compounds, namely Cys-GTdS, nicotinamide, thiamine, and gluconic acid, have highly positive PC1 loading values, indicating that they are characteristic of postmortem aging of beef.

Gluconic acid and the precursor gluconolactone can promote growth of intestinal Bifidobacterium, since oral administration of gluconate increases the number of fecal Bifidobacteria, resulting in increased defecation frequency in humans [27]. The polyamines spermidine and putrescine were also detected in the present study. Changes in those polyamines during postmortem beef aging have not been reported previously. Spermidine also has a role of promoting microbiota growth in the intestine and thereby delaying senescence in mice [28]. Spermidine is a final compound in Gln degradation via ornithine and putrescine [20], which seemed to progress in postmortem LT muscle in the present study. Thiamine and PMP are well known as precursors of vitamins B2 and B6, respectively, which are essential nutrients for humans, as is nicotinamide [20]. The increases in the metabolites discussed above (i.e., choline, gluconate, polyamines, and vitamins) during the aging process may enhance the functional value of the beef.

In addition, according to the PCA loading analysis, thiamine is one of the most characteristic metabolites to show the extent of postmortem aging of the LT muscle, which has also been confirmed in porcine muscles [29,30]. Recently we hypothesized that thiamine may be generated by sequential dephosphorylation steps starting from thiamine triphosphate (ThTP) via thiamine diphosphate (ThDP) in the postmortem porcine muscles [30]. As thiamine is more absolvable than ThDP in intestinal epithelial cells [31], an increase in thiamine in aged beef may be beneficial for human health. Interestingly, neither ThTP nor ThDP was detected in the LT muscle during aging, even when using the same methodology as in the previous pork study. This difference might be due to the interspecies difference in metabolism, as suggested by the different contents of ThTP found in bovine and porcine muscles [29]. The mechanism of postmortem thiamine accumulation in bovine muscle requires further investigation.

Several other compounds have been shown to be characteristic of the postmortem aging of beef. PCA loading analysis showed higher contributions of Cys-GTdS (Figure 4) and hypoxanthine in the aged beef. In beef from Angus crossbred steers, the contents of acylcarnitines (butyryl-, pivaloyl-, hexanoyl-, octanoyl-, decanoyl-, and propionylcarnitines) were temporarily elevated during the aging period [10]. In the present study, butyryl-, malonyl-, isovaleryl-, and octanoylcarnitines were detected, but only butyrylcarnitine increased in the postmortem LT muscle (p<0.05, data not shown). The difference in detected compounds between the two studies might have been due to the different breeds of cattle studied, rather than the different detection methods used.


Several potential limitations should be mentioned. In the present study, we only used three steers, which is a minimal number for experiments. Moreover, there was a variation of body weight among the tested steers, and the impact of body weight on postmortem metabolite generation remains unknown. Nevertheless, our finding of significant changes in metabolite contents agreed with the results of past studies of postmortem meat aging, especially in regard to ATP degradation and the generation of amino acids and peptides. This suggests that the overall tendency of metabolomic changes observed in the three steers in this study would not contradict that observed in studies using larger numbers of animals, although further analyses are necessary to confirm those results.


In the postmortem aging process in the LT muscle of JB steer, glycolysis, the citric acid cycle, the pentose phosphate pathway, protein digestion, amino acid generation, and purine metabolism were highlighted as the characteristic biochemical events. The accumulation of products in those pathways, such as IMP, R5P, and Glu, is expected to contribute to the improvement of the quality traits of aged beef. In addition, thiamine, choline, and Cys-GTdS could be useful as biomarkers of aged beef. Due to the accumulation of some of nutritional ingredients, the aging of beef may increase its value as a food and may contribute to human health.


We certify that there is no conflict of interest with any financial organization regarding the material discussed in the manuscript.


We thank the personnel at the cattle house of the Livestock Research Support Center of the NARO Institute of Livestock and Grassland Science for their support, especially Mr. K. Inoue and Mr. K. Kajitani, who skillfully prepared beef cuts. We also thank Dr. H. Shingu and Mr. M. Hayashi at Division of Animal Metabolism and Nutrition for their rearing management of the cattle, and Mrs. C. Shindo and Mrs. M. Ichimura for their technical supports. This research was partly supported by the Japan Society for the Promotion of Science (JSPS KAKENHI JP15K07775 to SM).


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[31.] Manzetti S, Zhang J, van der Spoel D. Thiamin function, metabolism, uptake, and transport. Biochemistry 2014;53:821-35.

Susumu Muroya (1),*, Mika Oe (1), Koichi Ojima (1), and Akira Watanabe (2)

* Corresponding Author: Susumu Muroya Tel: +81-29-838-8686, Fax: +81-29-838-8686, E-mail:

(1) Muscle Biology Research Unit, Animal Products Research Division, NARO Institute of Livestock and Grassland Science, Tsukuba, Ibaraki 305-0901, Japan

(2) NARO Tohoku Agricultural Research Center, Morioka, Iwate 020-0198, Japan


Susumu Muroya

Mika Oe

Koichi Ojima

Akira Watanabe

Submitted Aug 31, 2018; Revised Oct 25, 2018; Accepted Dec 20, 2018

Caption: Figure 1. Postmortem pH decline in Longissimus thoracis muscle of Japanese Black steers. Different letters (a, b) indicate significant differences among time points (p<a.001). Error bars indicate standard error (n = 3).

Caption: Figure 2. Heatmap result of hierarchical clustering analysis of metabolomic changes during postmortem aging in Longissimus thoracis muscle of Japanese Black steers. Three cattle samples were allocated to each group at a specific time point (day 0: D0, day 1: D1, day 14: D14). The row displays the metabolite and the column represents the sample. Metabolites with relatively low contents are displayed in green, while metabolites with relatively high contents are displayed in red. The brightness of each color corresponds to the magnitude of the difference when compared with the average value.

Caption: Figure 3. Principal component analysis of Longissimus thoracis muscle of Japanese Black steers by metabolomic changes during postmortem aging. The plots of open square (D0), gray triangle (D1), and closed circle (D14) indicate LT samples taken at 0,24 h (1 d), and 168 h (14 d) postmortem, respectively.

Caption: Figure 4. Postmortem changes in relative contents of metabolites in Longissimus thoracis muscle of Japanese Black steers. The relative content contents (vertical axis) were normalized using a method described in Materials and Methods. The horizontal axis indicates postmortem time (day 0: D0, day 1: D1, day 14: D14). Error bars indicate standard error (n = 3). Different letters (a, b, c) indicate significant differences among time points (p<0.05) in post hoc least significant difference test after analysis of variance (p = 0.05 for pyridoxamine 5'-phosphate; p = 0.07 for CDP-choline; p<0.05 for the other compounds).
Table 1. Changes in the contents of compounds during
post-mortem Japanese Black beef aging


Compound                      Mean (nmol/g)       SE

3-Hydroxybutyric acid             136.6          22.8
6-Phosphogluconic acid              0           -- (a)
ADP                               53.5            2.1
Ala                              2,295.2         380.1
AMP                                 0             --
Arg                               334.5        35.7 (a)
Asn                               111.5         5.8 (a)
Asp                               44.1            9.3
ATP                              6,534.6       451.5 (b)
Betaine                          1,712.7         69.7
Carnosine                       12,381.8        1,028.1
Choline                           35.6          1.9 (a)
Citric acid                       113.7         9.4 (b)
Citrulline                        84.7           26.3
Creatine                        21,093.9        1,605.9
Creatinine                        479.6        10.7 (a)
CTP                               46.6          1.5 (b)
Cys                                1.6          0.8 (a)
Cytidine                           2.4          0.7 (a)
Dihydroxyacetone phosphate        801.1        113.7 (b)
Fructose 1,6-diphosphate          168.8        33.2 (b)
Fructose 6-phosphate             2,343.4         188.8
Fumaric acid                      166.4          41.5
GABA                              19.4            2.9
Gln                              3,613.6         530.1
Glu                               312.4        68.0 (a)
Gluconic acid                       0             --
Glucose 1-phosphate               598.9          57.3
Glucose 6-phosphate             10,707.5         825.7
Glutathione (GSH)                 696.7          77.9
Glutathione (GSSG)_divalent       91.5          9.7 (b)
Gly                              1,083.4         15.7
Glycerol 3-phosphate             4,032.4       715.9 (b)
GMP                                 0           -- (a)
GTP                               171.5         9.1 (b)
Guanosine                           0           -- (a)
His                               152.1        19.0 (a)
Hydroxyproline                    45.2            3.6
Hypoxanthine                       9.9          2.3 (a)
Ile                               177.8        17.9 (a)
IMP                               78.4         39.2 (a)
Inosine                            4.5          2.5 (a)
Lactic acid                     43,827.0      6,652.1 (a)
Leu                               263.3        25.7 (a)
Lys                               341.3        36.0 (a)
Malic acid                        802.1        138.4 (b)
Met                               44.0          4.1 (a)
NAD+                              550.5        59.7 (c)
Ornithine                         84.6            4.8
Phe                               113.2        10.8 (a)
Pro                               267.4          17.8
PRPP                              24.0          0.8 (b)
Putrescine                         9.9          0.9 (a)
Pyruvic acid                        0             --
Ribose 5-phosphate                  0            --(a)
Ribulose 5-phosphate              34.9          8.9 (a)
S-Adenosylmethionine               8.5          2.3 (a)
Sedoheptulose 7-phosphate           0            --(a)
Ser                               290.0        17.1 (a)
Spermidine                         1.6          0.1 (a)
Spermine                            0             --
Succinic acid                    1,250.1         374.2
Thr                               202.5         9.8 (a)
Trp                               38.5          3.8 (a)
Tyr                               89.8          8.2 (a)
UMP                                0.0           --(a)
Uridine                           14.1          2.3 (a)
UTP                               124.5        10.3 (b)
Val                               362.7        31.3 (a)
[beta]-Ala                        119.8          34.9


Compound                      Mean (nmol/g)        SE

3-Hydroxybutyric acid             211.3           30.7
6-Phosphogluconic acid            19.1           0 (a)
ADP                               35.2            9.9
Ala                              2,427.6         246.5
AMP                               99.1            39.8
Arg                               405.7         11.7 (a)
Asn                               114.6         5.6 (a)
Asp                               13.1            13.1
ATP                               21.1          7.0 (a)
Betaine                          1,611.4         214.4
Carnosine                       1,2587.4        1,069.8
Choline                           58.4          13.3 (a)
Citric acid                       43.3          10.5 (a)
Citrulline                        86.0            17.3
Creatine                        23,799.2        3,311.2
Creatinine                        678.1         74.4 (b)
CTP                                 0            -- (a)
Cys                               23.6          6.9 (a)
Cytidine                           5.2          0.5 (a)
Dihydroxyacetone phosphate          0            -- (a)
Fructose 1,6-diphosphate          24.3          2.7 (a)
Fructose 6-phosphate             3,994.1         854.2
Fumaric acid                      35.3            35.3
GABA                              21.0            1.8
Gln                              3,228.4         177.8
Glu                               151.2         17.7 (a)
Gluconic acid                     27.0            4.6
Glucose 1-phosphate               938.4          239.5
Glucose 6-phosphate             16,657.2        3,995.0
Glutathione (GSH)                 711.5           56.7
Glutathione (GSSG)_divalent       44.5          8.9 (a)
Gly                              1,121.1         164.7
Glycerol 3-phosphate             1,087.3       493.4 (a)
GMP                               118.2         19.4 (b)
GTP                                 0            -- (a)
Guanosine                          4.7          1.1 (a)
His                               151.5         11.3 (a)
Hydroxyproline                    47.5            8.5
Hypoxanthine                      335.0         36.9 (a)
Ile                               231.0         10.7 (a)
IMP                              7,574.3      1,402.1 (c)
Inosine                           543.5         91.7 (b)
Lactic acid                     115,982.1     15,570.4 (b)
Leu                               314.7         18.7 (a)
Lys                               454.2         54.4 (a)
Malic acid                        329.4        124.6 (a)
Met                               42.6          2.4 (a)
NAD+                              277.9         84.7 (b)
Ornithine                         91.2            8.6
Phe                               138.2         7.8 (a)
Pro                               275.0           35.1
PRPP                                0            --(a)
Putrescine                        19.5          0.9 (b)
Pyruvic acid                      182.2          182.2
Ribose 5-phosphate                56.6          8.6 (b)
Ribulose 5-phosphate              180.1         6.2 (b)
S-Adenosylmethionine              18.6          2.7 (b)
Sedoheptulose 7-phosphate         29.9          3.1 (a)
Ser                               311.8         19.9 (a)
Spermidine                        22.8          3.3 (b)
Spermine                          71.8            22.6
Succinic acid                    1,071.2         180.6
Thr                               219.5         26.4 (a)
Trp                               45.0          4.9 (a)
Tyr                               105.7         3.7 (a)
UMP                               85.6          12.6 (b)
Uridine                           29.6          4.6 (a)
UTP                                 0            --(a)
Val                               402.8         28.9 (a)
[beta]-Ala                        94.8            10.9

                                           D14              ANOVA

Compound                      Mean (nmol/g)       SE        p-value

3-Hydroxybutyric acid             198.0          29.0        0.069
6-Phosphogluconic acid            75.4         17.7 (b)      0.021
ADP                               31.0            4.5        0.119
Ala                              2,930.5         241.8       0.283
AMP                               47.7            3.5        0.092
Arg                               641.4        44.3 (b)      0.013
Asn                               208.2        16.0 (b)      0.008
Asp                               39.3            3.5         NA
ATP                               16.4          2.7 (a)     <0.001
Betaine                          1,560.7         84.1        0.689
Carnosine                       11,076.5        1,387.0      0.706
Choline                           134.4        17.9 (b)      0.006
Citric acid                         0           -- (a)       0.002
Citrulline                        79.6            9.8        0.925
Creatine                        20,804.1         504.8       0.610
Creatinine                       1,019.7       29.5 (c)      0.004
CTP                                 0           -- (a)      <0.001
Cys                               107.2        19.0 (b)      0.005
Cytidine                          12.0          1.4 (b)      0.006
Dihydroxyacetone phosphate          0           -- (a)       0.001
Fructose 1,6-diphosphate            0           -- (a)       0.004
Fructose 6-phosphate             2,200.8         365.1       0.178
Fumaric acid                      115.8          40.2         NA
GABA                              18.4            2.1        0.804
Gln                              4,126.7         707.3       0.278
Glu                               776.0        165.1 (b)     0.032
Gluconic acid                     77.0            8.8        0.003
Glucose 1-phosphate               427.9          65.0        0.204
Glucose 6-phosphate              8,776.5        1,544.9      0.226
Glutathione (GSH)                 707.2           7.4        0.961
Glutathione (GSSG)_divalent       45.1          9.5 (a)     <0.001
Gly                              1,272.8         62.6        0.537
Glycerol 3-phosphate              90.0         20.9 (a)      0.018
GMP                               78.1          6.9 (b)      0.003
GTP                                 0           -- (a)      <0.001
Guanosine                         14.1          3.1 (b)      0.007
His                               256.4        23.8 (b)      0.029
Hydroxyproline                    44.0            7.1        0.898
Hypoxanthine                     2,212.6       203.3 (b)    <0.001
Ile                               512.3        74.8 (b)      0.016
IMP                              3,437.7       205.6 (b)     0.006
Inosine                          1,109.1       239.5 (c)     0.008
Lactic acid                     105,428.9     6,388.3 (b)    0.020
Leu                               826.8        132.6 (b)     0.019
Lys                               732.6        12.1 (b)      0.006
Malic acid                        105.1        28.9 (a)      0.017
Met                               323.7        71.0 (b)      0.014
NAD+                              20.2          5.2 (a)      0.004
Ornithine                         148.5          38.1        0.196
Phe                               419.5        76.2 (b)      0.020
Pro                               338.4          26.1        0.212
PRPP                                0            --(a)      <0.001
Putrescine                        19.3          2.4 (b)      0.002
Pyruvic acid                        0             --          NA
Ribose 5-phosphate                70.0         16.6 (b)      0.031
Ribulose 5-phosphate              215.0        48.6 (b)      0.035
S-Adenosylmethionine               4.0          1.3 (a)      0.008
Sedoheptulose 7-phosphate         308.9        48.4 (b)      0.002
Ser                               735.1        94.4 (b)      0.012
Spermidine                        20.6          2.8 (b)      0.002
Spermine                          31.0           13.3        0.078
Succinic acid                    1,953.8         360.0       0.280
Thr                               425.9        41.5 (b)      0.018
Trp                               84.7         10.1 (b)      0.030
Tyr                               348.3        73.4 (b)      0.027
UMP                               34.7          7.2 (a)      0.003
Uridine                           131.9        11.0 (b)     <0.001
UTP                                 0            --(a)      <0.001
Val                               760.3        114.8 (b)     0.050
[beta]-Ala                        105.5          22.1        0.849

ANOVA, analysis of variance; SE, standard error; ADP, adenosine
diphosphate; AMP, adenosine monophosphate; ATP, adenosine
triphosphate; CTP, cytidine triphosphate; GABA, [gamma]-aminobutyric
acid; GMP, guanosine monophosphate; GTP, guanosine triphosphate;
IMP, inosine 5'-monophosphate; PRPP, phosphoribosyl pyrophosphate;
UMP, uridine monophosphate; UTP, uridine triphosphate.

The compounds are quantified by CE-TOFMS and shown in nmol/g. The
contents of compounds under detection are indicated as 0. Compounds
that were not detected throughout the experimental duration are not

(a-c) Values with different subscript differ between aging time
points (p < 0.05).

NA, not applicable due to too large variance between the samples.

Table 2. Loading values of top 20 compounds for principal
component-1 and -2 of Japanese black beef aging analysis (1)

PC1       Compound name

0.1184    Cysteine glutathione disulfide
0.1177    Galactosamine/Glucosamine
0.1159    Glucose 6-phosphate
0.1157    Nicotinamide
0.1156    Thiamine
0.1155    S-Adenosylhomocysteine
0.1153    Cys
0.1152    Hypoxanthine
0.1147    Uridine
0.1146    Gluconic acid
-0.0947   S-Lactoylglutathione
-0.0970   Fructose 1,6-diphosphate
-0.1000   Glycerol 3-phosphate
-0.1008   UDP-N-acetylgalactosamine/UDP-N-acetylglucosamine
-0.1010   Malic acid
-0.1041   UDP-glucose/UDP-galactose
-0.1041   Citric acid
-0.1042   Argininosuccinic acid
-0.1111   Trimethylamine N-oxide
-0.1121   NAD+

PC2       Compound name

0.1504    N5-Ethylglutamine
0.1461    S-Methylcysteine
0.1427    Malonylcarnitine
0.1414    Gly
0.1384    Terephthalic acid
0.1344    Urea
0.1330    Betaine
0.1302    Glutathione
0.1269    Methylhistidine
0.1224    NADH
-0.0766   GMP
-0.0814   Uric acid
-0.0861   ADP-ribose
0.0984    Spermine
-0.1018   Nicotinamide mononucleotide
0.1047    UMP
-0.1095   IMP
-0.1209   Pyruvic acid
-0.1300   AMP
-0.1500   IDP

NADH, nicotinamide adenine dinucleotide; GMP, guanosine
monophosphate; ADP, adenosine diphosphate; UDP, uridine diphosphate;
UMP, uridine monophosphate; IMP, inosine 5'-monophosphate; AMP,
adenosine monophosphate; IDP, inosine 5'-diphosphate.

(1) Compounds with top 20 positive and negative loading values for
PC1 and PC2 are listed.

Table 3. Representative KEGG metabolic pathways that contain
significantly changed metabolites during postmortem aging of
Japanese Black Longissimus thoracis muscle (1)

                                          Relative content (2)


KEGG pathway, compounds                      Mean          SE

Protein digestion and absorption
  Asn                                       146.6         11.6
  Asp                                        62.8         6.2
  Cys                                        0.6          0.3
  Cystine                                     0            --
  Glu                                       444.0         53.4
  His                                       251.0         10.6
  Ile                                       715.3         81.9
  Leu                                      1,229.4        52.1
  Lys                                       502.3         73.5
  Met                                        91.9         3.0
  Phe                                       349.8         17.2
  Ser                                       399.9         30.6
  Thr                                       369.2         28.5
  Trp                                        80.4         6.0
  Tyr                                       182.2         6.2
  Val                                      1,088.8        45.9
  Ala-Ala                                     0            --
  Glu-Glu                                     0            --
  Gly-Gly                                     0            --
  His-Glu                                     0            --
  Thr-Asp Ser-Glu                             0            --
  Tyr-Glu                                     0            --
Glycolytic pathway
  Dihydroxyacetone phosphate                245.1         16.0
  Fructose 1,6-diphosphate                  112.9         11.0
  Lactic acid                              14,121.1     1,212.1
Citric acid cycle
  Citric acid                                91.8         9.9
  Fumaric acid                               42.9         6.0
  Malic acid                                563.4         39.4
Pyruvate metabolism
  Dihydroxyacetone phosphate                245.1         16.0
  Lactic acid                              14,121.1     1,212.1
  Malic acid                                563.4         39.4
Pentose phosphate pathway
  6-Phosphogluconic acid                      0            --
  Ribose 5-phosphate                          0            --
  Ribulose 5-phosphate                       15.0         2.2
  Sedoheptulose 7-phosphate                   0            --
Nicotinate and nicotinamide metabolism
  Dihydroxyacetone phosphate                245.1         16.0
  Fumaric acid                               42.9         6.0
  NAD+                                      221.4         13.8
  Nicotinamide                              156.8         10.6
Glycerophospholipid metabolism
  CDP-choline                                1.3          1.1
  Choline                                    94.1         6.7
  Dihydroxyacetone phosphate                245.1         16.0
  Glycerol 3-phosphate                     1,560.5       193.1
Purine metabolism
  AMP                                         0            --
  ADP-ribose                                 4.6          3.0
  ADP                                        36.8         4.0
  ATP                                      4,888.2       430.3
  GMP                                         0            --
  GTP                                        85.2         11.7
  Guanosine                                   0            --
  Hypoxanthine                               12.4         1.5
  IMP                                        26.3         9.5
  Inosine                                    3.9          2.5
  PRPP                                       11.3         1.0
  Ribose 5-phosphate                          0            --
  Uric acid                                  8.1          1.2
  Xanthine                                    0            --
  Xanthosine                                  0            --
Cysteine metabolism
  Cys                                        0.6          0.3
  Cystine                                     0            --
  Glutathione (GSSG)_divalent               192.9         12.0
  Homocysteine                               2.8          1.4
  Ser                                       399.9         30.6
Glutathione metabolism
  5-Oxoproline                               7.8          3.2
  Cys                                        0.6          0.3
  Glu                                       444.0         53.4
  Spermidine                                 2.8          0.1

                                          Relative content (2)


KEGG pathway, compounds                      Mean          SE

Protein digestion and absorption
  Asn                                       125.9         25.0
  Asp                                        10.5         8.5
  Cys                                        29.3         16.9
  Cystine                                     0            --
  Glu                                       201.3         63.6
  His                                       208.7         35.4
  Ile                                       770.9        151.8
  Leu                                      1,234.5       231.2
  Lys                                       524.1         67.4
  Met                                        79.4         22.7
  Phe                                       358.7         67.7
  Ser                                       363.3         77.5
  Thr                                       325.5         52.7
  Trp                                        76.1         10.7
  Tyr                                       182.5         37.9
  Val                                      1,005.1       174.8
  Ala-Ala                                     0            --
  Glu-Glu                                    13.1         8.2
  Gly-Gly                                    5.6          2.3
  His-Glu                                     0            --
  Thr-Asp Ser-Glu                             0            --
  Tyr-Glu                                    2.7          1.7
Glycolytic pathway
  Dihydroxyacetone phosphate                  0            --
  Fructose 1,6-diphosphate                   6.7          2.8
  Lactic acid                              30,112.3      3571.4
Citric acid cycle
  Citric acid                                13.7         5.9
  Fumaric acid                               5.1          4.2
  Malic acid                                182.8         41.3
Pyruvate metabolism
  Dihydroxyacetone phosphate                  0            --
  Lactic acid                              30,112.3      3571.4
  Malic acid                                182.8         41.3
Pentose phosphate pathway
  6-Phosphogluconic acid                     1.5          1.2
  Ribose 5-phosphate                         22.6         5.2
  Ribulose 5-phosphate                       68.2         14.4
  Sedoheptulose 7-phosphate                  11.8         2.0
Nicotinate and nicotinamide metabolism
  Dihydroxyacetone phosphate                  0            --
  Fumaric acid                               5.1          4.2
  NAD+                                       80.9         11.8
  Nicotinamide                              386.5         76.3
Glycerophospholipid metabolism
  CDP-choline                                7.4          1.8
  Choline                                   122.5         20.8
  Dihydroxyacetone phosphate                  0            --
  Glycerol 3-phosphate                      348.0        109.7
Purine metabolism
  AMP                                        43.3         6.8
  ADP-ribose                                 9.9          2.2
  ADP                                        17.9         1.8
  ATP                                        11.1         1.0
  GMP                                        43.6         7.4
  GTP                                         0            --
  Guanosine                                  7.7          2.7
  Hypoxanthine                              396.9        131.0
  IMP                                      2,035.0       155.8
  Inosine                                   742.3        265.3
  PRPP                                        0            --
  Ribose 5-phosphate                         22.6         5.2
  Uric acid                                  19.0         1.7
  Xanthine                                   57.1         12.4
  Xanthosine                                 2.9          1.4
Cysteine metabolism
  Cys                                        29.3         16.9
  Cystine                                     0            --
  Glutathione (GSSG)_divalent                73.5         8.2
  Homocysteine                               4.6          1.9
  Ser                                       363.3         77.5
Glutathione metabolism
  5-Oxoproline                               21.7         7.2
  Cys                                        29.3         16.9
  Glu                                       201.3         63.6
  Spermidine                                 31.9         3.3

                                          Relative content (2)


KEGG pathway, compounds                      Mean          SE

Protein digestion and absorption
  Asn                                       234.5         18.8
  Asp                                        49.8         3.2
  Cys                                       120.2         69.4
  Cystine                                    2.2          0.3
  Glu                                       971.5        168.3
  His                                       368.2         27.1
  Ile                                      1,757.5       233.9
  Leu                                      3,354.1       483.3
  Lys                                       905.9         30.8
  Met                                       587.9        113.4
  Phe                                      1,124.8       180.6
  Ser                                       872.2        107.5
  Thr                                       666.3         64.9
  Trp                                       152.3         16.2
  Tyr                                       614.9        114.6
  Val                                      1,980.0       272.2
  Ala-Ala                                    20.1         4.2
  Glu-Glu                                    75.6         14.2
  Gly-Gly                                    13.7         0.3
  His-Glu                                    5.0          1.6
  Thr-Asp Ser-Glu                            10.0         1.8
  Tyr-Glu                                    10.6         1.8
Glycolytic pathway
  Dihydroxyacetone phosphate                  0            --
  Fructose 1,6-diphosphate                    0            --
  Lactic acid                              29,663.1      2222.0
Citric acid cycle
  Citric acid                                 0            --
  Fumaric acid                               17.2         8.4
  Malic acid                                 65.6         15.8
Pyruvate metabolism
  Dihydroxyacetone phosphate                  0            --
  Lactic acid                              29,663.1      2222.0
  Malic acid                                 65.6         15.8
Pentose phosphate pathway
  6-Phosphogluconic acid                     28.0         5.9
  Ribose 5-phosphate                         29.0         6.2
  Ribulose 5-phosphate                       83.8         17.1
  Sedoheptulose 7-phosphate                 127.4         14.8
Nicotinate and nicotinamide metabolism
  Dihydroxyacetone phosphate                  0            --
  Fumaric acid                               17.2         8.4
  NAD+                                       4.9          2.3
  Nicotinamide                              754.0         73.9
Glycerophospholipid metabolism
  CDP-choline                                8.5          0.4
  Choline                                   301.9         27.9
  Dihydroxyacetone phosphate                  0            --
  Glycerol 3-phosphate                       30.2         6.2
Purine metabolism
  AMP                                        25.6         1.6
  ADP-ribose                                  0            --
  ADP                                        18.0         2.3
  ATP                                        6.8          2.9
  GMP                                        30.3         2.1
  GTP                                         0            --
  Guanosine                                  21.4         4.3
  Hypoxanthine                             2,466.0       186.9
  IMP                                      1,031.6        64.7
  Inosine                                  1,407.6       276.1
  PRPP                                        0            --
  Ribose 5-phosphate                         29.0         6.2
  Uric acid                                  10.7         0.4
  Xanthine                                  219.4         22.2
  Xanthosine                                 6.6          0.2
Cysteine metabolism
  Cys                                       120.2         69.4
  Cystine                                    2.2          0.3
  Glutathione (GSSG)_divalent                81.0         11.3
  Homocysteine                               14.6         0.6
  Ser                                       872.2        107.5
Glutathione metabolism
  5-Oxoproline                               67.7         12.0
  Cys                                       120.2         69.4
  Glu                                       971.5        168.3
  Spermidine                                 31.3         3.7

                                          Adjusted   Numbers of
KEGG pathway, compounds                   p value    metabolites

Protein digestion and absorption                        16/31
  Asn                                      0.0092
  Asp                                      0.0084
  Cys                                      0.0009
  Cystine                                 <0.0001
  Glu                                      0.0067
  His                                      0.0098
  Ile                                      0.0033
  Leu                                      0.0019
  Lys                                      0.0023
  Met                                      0.0010
  Phe                                      0.0018
  Ser                                      0.0029
  Thr                                      0.0032
  Trp                                      0.0028
  Tyr                                      0.0032
  Val                                      0.0090
  (Dipeptides)                                           6/7
  Ala-Ala                                  0.0006
  Glu-Glu                                  0.0012
  Gly-Gly                                  0.0031
  His-Glu                                  0.0047
  Thr-Asp Ser-Glu                          0.0002
  Tyr-Glu                                  0.0028
Glycolytic pathway                                      3/12
  Dihydroxyacetone phosphate              <0.0001
  Fructose 1,6-diphosphate                 0.0001
  Lactic acid                              0.0173
Citric acid cycle                                        3/4
  Citric acid                              0.0004
  Fumaric acid                             0.0369
  Malic acid                               0.0004
Pyruvate metabolism                                      3/9
  Dihydroxyacetone phosphate              <0.0001
  Lactic acid                              0.0173
  Malic acid                               0.0004
Pentose phosphate pathway                            4/9
  6-Phosphogluconic acid                  0.0008
  Ribose 5-phosphate                      0.0252
  Ribulose 5-phosphate                    0.0491
  Sedoheptulose 7-phosphate               0.0000
Nicotinate and nicotinamide metabolism               4/15
  Dihydroxyacetone phosphate              <0.0001
  Fumaric acid                            0.0369
  NAD+                                    0.0001
  Nicotinamide                            0.0025
Glycerophospholipid metabolism                       4/10
  CDP-choline                             0.0003
  Choline                                 0.0314
  Dihydroxyacetone phosphate              <0.0001
  Glycerol 3-phosphate                    0.0010
Purine metabolism                                    15/50
  AMP                                     0.0025
  ADP-ribose                              0.0057
  ADP                                     0.0133
  ATP                                     0.0001
  GMP                                     0.0031
  GTP                                     0.0005
  Guanosine                               0.0059
  Hypoxanthine                            <0.0001
  IMP                                     0.0001
  Inosine                                 0.0244
  PRPP                                    <0.0001
  Ribose 5-phosphate                      0.0252
  Uric acid                               0.0052
  Xanthine                                0.0001
  Xanthosine                              0.0076
Cysteine metabolism                                  5/18
  Cys                                     0.0009
  Cystine                                 <0.0001
  Glutathione (GSSG)_divalent             0.0011
  Homocysteine                            0.0009
  Ser                                     0.0029
Glutathione metabolism                               4/16
  5-Oxoproline                            0.0026
  Cys                                     0.0009
  Glu                                     0.0067
  Spermidine                              0.0014

KEGG, Kyoto encyclopedia of genes and genomes; SE, standard error;
AMP, adenosine monophosphate; ADP, adenosine diphosphate; ATP,
adenosine triphosphate; GMP, guanosine monophosphate; GTP, guanosine
triphosphate; IMP, inosine 5'-monophosphate; PRPP, phosphoribosyl

(1) Compounds were extracted and listed if their changes were
significant during postmortem aging of Japanese Black cattle
Longissimus thoracis muscle (adjusted p<0.05, corresponding to false
discovery rate <0.1). The relative value of each compound to 3MH is

(2) Numbers of significantly changed compounds/total numbers of the
analyzed compounds that belong to the KEGG pathway.
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Article Details
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Author:Muroya, Susumu; Oe, Mika; Ojima, Koichi; Watanabe, Akira
Publication:Asian - Australasian Journal of Animal Sciences
Geographic Code:9JAPA
Date:Jul 26, 2019
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