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Measurement of viral load by the automated Abbott real-time HIV-1 assay using dried blood spots collected and processed in Malawi and Mozambique.

The use of dried blood spots (DBS) has greatly facilitated genetic and metabolic screening of newborns by simplifying sample collection, storage and transport. Measuring the HIV-1 burden from whole blood dried on filter paper provides a suitable alternative for low-technology settings with limited access to laboratory facilities, such as sub-Saharan Africa (SSA). Nucleic acids in DBS have been shown to be stable for several months at room temperature, provided the DBS specimens are thoroughly dried and are stored with desiccant. [1-4] DBS specimens can therefore be collected at remote rural sites and transported to a central or regional testing laboratory without refrigeration. DBS are user-friendly and cost-effective in resource-limited settings, their ability being demonstrated to correctly identify virological failure. [5-7] DBS use may therefore represent a paradigm shift in accessibility to virological testing for HIV infection. Indeed, the Diagnostic Access Initiative (http://www.unaids.org) signed in Melbourne during the 20th International AIDS Conference in July 2014, specifically focused on ensuring that all people accessing HIV treatment should have ready access to tests that monitor levels of the virus in their bodies, and underlined the importance of developing new and affordable viral load and early infant diagnosis technology.

The objective of this study was to evaluate and validate, in SSA, HIV viral load measurement from DBS with a reliable, all-automated, standard commercial assay, the Abbott m2000 (Abbott Molecular, USA). The study was performed in two healthcare settings in two different countries, Malawi and Mozambique, within the health centre network of the DREAM (Drug Resource Enhancement against AIDS and Malnutrition) Programme of the Community of Sant'Egidio. Briefly, DREAM is a holistic programme started in December 2001 for the care of people living with HIV and the prevention of mother-to-child transmission (http://dream.santegidio.org). To date, the DREAM programme is active in ten countries (Mozambique, Malawi, Tanzania, Kenya, Republic of Guinea, Guinea Bissau, Cameroon, Democratic Republic of Congo, Angola and Nigeria) in SSA, with a network of 42 health centres and 20 laboratories. Because of the hub infrastructure used for health centres and laboratories in every country, only those facilities with molecular biology laboratories perform the HIV viral load testing. The possibility of using DBS to deliver samples for HIV viral load may therefore increase the accessibility to the test in rural areas and small settings. In this study, results were analysed according to different thresholds of HIV-RNA in order to develop an HIV viral load testing procedure from DBS that could be implemented in SSA.

Methods

Paired plasma and DBS samples were collected from 119 patients in 20 centres referring to the DREAM Health Centre of Blantyre, Malawi, and from 158 patients in 23 centres referring to the Centro Para Crianca, Maputo, Mozambique. The DREAM Programme has been approved by the National AIDS Commission of Malawi and by the Ministerio de Saude-Direccao de Planificacao e Cooperacao of Mozambique. Eight hundred microlitres of plasma were used to extract nucleic acids with the Abbott automatic extractor, Sample Preparation System (m2000SP). The nucleic acids extracted by m2000SP were used for real-time amplification with the Abbott m2000RT using the 0.6 mL HIV-RNA protocol. DBS (50 [micro]L of peripheral blood per spot) were air-dried overnight and stored in a plastic bag with desiccant at room temperature. DBS eluate was obtained by incubating two of five spots for each sample with 1.7 mL of Abbot Bulk lysis buffer for 15 minutes at room temperature with constant mixing. The eluate was transferred to a test tube and extracted using the m2000SP automatic extractor with the 1.0 mL HIV-1 RNA DBS Exp V04 protocol. The extracted material was then quantitated as the plasma samples with the real-time PCR Abbott m2000RT using the corresponding 1 mL DBS protocol, according to the manufacturer's instructions.

All HIV-RNA values were [log.sub.10] transformed before analysis. Results reported as not detected and below detection limit (<40 copies/mL) were analysed considering a value of 1.6 [log.sub.10] HIV-RNA per mL. Results were expressed as means and standard deviations (SDs). Viral load measured in DBS and paired plasma samples were compared by the Pearson correlation analysis. The Bland-Altman method[R] was used for analysis of concordance between the results obtained from plasma and those obtained from DBS. Statistical analysis was done using SPSS version 22 (IBM, USA).

Results

A total of 277 paired plasma and DBS samples were analysed. Samples were divided according to the HIV-RNA level in plasma: <2 [log.sub.10] (n = 109), 2 [log.sub.10] (range 2.11 - 2.99; n = 30), 3 [log.sub.10] (range 3.10 - 3.99; n = 81), 4 [log.sub.10] (range 4.04 - 4.96; n = 29) and [greater than or equal to] 5 [log.sub.10] (range 5.03 - 6.84; n = 28). Samples were analysed after a mean time of 1 week after collection and storage (at room temperature).

Agreement between detectable and undetectable viral load for plasma and DBS was seen in 83.0% of cases. In 16.6% of cases (n = 46), HIV-RNA was not detectable in DBS while measurable levels were present in plasma (between 1.76 and 3.83 logs; mean 2.48). One DBS gave a result of 3.54 [log.sub.10] while the corresponding plasma level was <1.6 [log.sub.10]. In all other cases of undetectable viral load in plasma (n = 99), HIV-RNA was not detectable in DBS. The lowest HIV-RNA level detected by DBS was 616 copies/mL.

Using the 40 copies/mL threshold, the test had relatively good sensitivity (74%), high specificity (99%) and a high positive predictive value (99.2%) (Table 1). Negative predictive value was low (68.3%) as an effect of the low rate of detection when plasma HIV-RNA was below 3 log copies/mL. Among samples with detectable HIV-RNA, the correlation between viral load values obtained from the paired 131 plasma and DBS samples was high (Pearson correlation coefficient 0.946 and [.sup.R]2 = 0.895) (Fig. 1). The mean (SD) difference between the measured viral load in DBS and in plasma was 0.15 (0.27) log copies/mL. HIV-RNA levels obtained from DBS were higher than in plasma in 70.2% of the samples. However, this over-quantification was observed mainly in specimens with a plasma viral load of <3 000 copies/mL (mean (SD) difference 0.38 (0.19)), while the difference for samples with a plasma viral load of >3 000 copies/mL was negligible (0.09 (0.26)). Overall, viral load values between DBS and plasma differed by <0.5 log unit in 90.1% of cases and by <1 log unit in 100%.

Agreement between the two methods was calculated by the Bland-Altman method, [8] in which the differences between individual viral load results from plasma and DBS are plotted against the mean of the two results. In Fig. 2 it can be seen that the data are well scattered over the mean along the overall range of viral load examined and that all but five samples were within the 1.96 SD limits, underlining the good agreement between the two methods.

[FIGURE 1 OMITTED]

[FIGURE 2 OMITTED]

The detection rate with DBS was 90.1% when plasma levels were >1 000 copies/mL. Categorising the samples according to this 1 000 copies/mL threshold, of the 138 samples with a viral load of >1 000 copies/mL, 8 (5.8%) had a DBS viral load of <1 000 copies/ml and therefore would have been missed if the virological failure threshold had been set at 1 000 copies/mL. Of the 139 samples with a plasma viral load of <1 000 copies/mL, only 2 (1.4%) had an HIVRNA in DBS of >1 000 copies/ml and could represent false virological failure detection. With the threshold of 1 000 copies/mL, sensitivity was 94.2%, specificity 98.6% and positive and negative predictive values 98.5% and 94.5%, respectively (Table 1). The agreement between DBS and plasma HIV-RNA quantification at the 1 000 copies/mL threshold was high, as demonstrated by the Kappa coefficient value of 0.928 (standard error 0.022, p < 0.001).

Discussion

Several reports have been published on the use of DBS for viral load quantification using different methodologies, including the Abbott assay.[9] In the great majority of cases the results were comparable with those obtained from plasma. However, the use of DBS collected and prepared in real-world conditions for viral load monitoring with the automated Abbott assay has been reported in only a few studies. [10-12] Our data, obtained from DBS collected and processed by local personnel in Malawi and Mozambique, showed that DBS gave comparable results in respect of the reference method in the range from 3 to 7 logs copies/ mL. However, the detection rate below the threshold of 1 000 copies/mL was lower, as reported in other articles, [2,13] although the lowest plasma RNA value at which DBS RNA was detectable was 616 copies/mL in line with the threshold of 550 copies/mL previously reported for this assay. [5] The modest over-quantification that we observed with DBS can be ascribed to the presence of HIV-DNA and intracellular RNA and seems to have a greater impact on samples with a low viral load (in our study <3 000 copies/mL), as previously reported. [4,11,14]

The 2013 HIV treatment guidelines of the World Health Organization [15] indicate a threshold of 1 000 copies/mL of HIV-RNA to define virological failure using plasma, and suggest use of a higher, although undefined, threshold when using DBS. In previous studies performed with the Abbott system, sensitivity for the detection of virological failure at 1 000 copies/mL was between 75% and 100% and specificity was between 82% and 97%.110,111 In our study, very high positive and negative predictive values were observed when using a threshold of 1 000 copies/mL, suggesting that even with the use of DBS the threshold of 1 000 copies/mL can provide reliable results, given the specificity of 98.6% at this threshold.

The last systematic review of the use of DBS for monitoring HIV viral load [9] emphasised the need for a standardised approach for sampling, storing and processing DBS samples in order to establish whether DBS could reliably replace plasma specimens to identify virological failure. Our study suggests that DBS on filter paper, stored at room temperature and processed with an automated extractor, followed by real-time quantification of HIV-RNA, could represent a standard to be applied in resource-limited settings.

Conclusion

Our study demonstrated that HIV-1 quantification from DBS using a standardised commercial assay provides reliable identification of virological failure in SSA.

Acknowledgments. We acknowledge assistance of all the health workers of the health centres in Malawi and in Mozambique. The study was supported by the DREAM Programme, Community of Sant'Egidio, Rome, Italy.

References

[1.] Brambilla D, Jennings C, Aldrovrandi G, et al. Multicenter evaluation of use of dried blood and plasma spot specimens in quantitative assays for human immunodeficiency virus RNA: Measurement, precision, and RNA stability. J Clin Microbiol 2003; 41(5): 1888-1893. [http://dx.doi.org/10.1128/JCM.41.5.1888-1893.2003]

[2.] Mbida AD, Sosso S, Flori P, et al. Measure of viral load by using the Abbott Real-Time HIV1 assay on dried blood and plasma spot specimens collected in 2 rural dispensaries in Cameroon. J Acquir Immune Defic Syndr 2009; 52(1):9-16. [http://dx.doi.org/10.1097/QAI.0b013e3181aeccbc]

[3.] Van Deursen P, Oosterlaken T, Andre P, et al. Measuring human immunodeficiency virus type 1 RNA load in dried blood spot specimens using NucliSENS EasyQ HIV-1 v2.0. J Clin Virol 2010; 47(2):120-125. [http://dx.doi.org/10.1016/j.jcv.2009.11.021]

[4.] Pirillo MF, Recordon-Pinson P, Andreotti M, Mancini MG, Amici R, Giuliano M. Quantification of HIV-RNA from dried blood spots using the Siemens VERSANT[R] HIV-1 RNA (kPCR) assay. J Antimicrob Chemother 2011; 66(12):2823-2826. [http://dx.doi.org/10.1093/jac/dkr383]

[5.] Arredondo M, Garrido C, Parkin N, et al. Comparison of HIV-1 RNA measurements obtained by using plasma and dried blood spots in the automated Abbott real-time viral load assay. J Clin Microbiol 2012; 50(3):569-572. [http://dx.doi.org/10.1128/JCM.00418-11]

[6.] Johannessen A, Garrido C, Zahonero N, et al. Dried blood spots perform well in viral load monitoring of patients who receive antiretroviral treatment in rural Tanzania. Clin Infect Dis 2009; 49(6):976-981. [http://dx.doi.org/10.1086/605502]

[7.] Rottinghaus EK, Ugbena R, Diallo K, et al. Dried blood spot specimens are suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy. Clin Infect Dis 2012;54(8):1187-1195. [http://dx.doi.org/10.1093/cid/cis015]

[8.] Bland JM, Altman DG. Statistical methods for assessing agreement between two methods of clinical measurement. Lancet 1986;1(8476):307-310.

[9.] Smit PW, Sollis KA, Fiscus S, et al. Systematic review of the use of dried blood spots for monitoring HIV viral load and for early infant diagnosis. PLoS One 2014; 9(3):e86461. [http://dx.doi.org/10.1371/journal.pone.0086461]

[10.] Lofgren SM, Morrissey AB, Chevallier CC, et al. Evaluation of a dried blood spot HIV-1 RNA program for early infant diagnosis and viral load monitoring at rural and remote healthcare facilities. AIDS 2009;23(18):2459-2466. [http://dx.doi.org/10.1097/QAD.0b013e328331f702]

[11.] Monleau M, Aghokeng AF, Eymard-Duvernay S, et al. Field evaluation of dried blood spots for routine HIV-1 viral load and drug resistance monitoring in patients receiving antiretroviral therapy in Africa and Asia. J Clin Microbiol 2014; 52(2):578-586. [http://dx.doi.org/ 10.1128/JCM.02860-13]

[12.] Rutstein SE, Kamwendo D, Lugali L, et al Measures of viral load using Abbott RealTime HIV-1 Assay on venous and fingerstick dried blood spots from provider-collected specimens in Malawian district hospitals. J Clin Virol 2014;60(4): 392-398. [http://dx.doi.org/10.1016/j.jcv.2014.05.005]

[13.] Marconi A, Balestrieri M, Comastri G, et al. Evaluation of the Abbott Real-Time HIV-1 quantitative assay with dried blood spot specimens. Clin Microbiol Infect 2009; 15(1):93-97. [http://dx.doi.org/10.1111/j.1469-0691.2008.02116.x]

[14.] Vidya M, Saravanan S, Rifkin S, et al Dried blood spots versus plasma for the quantitation of HIV-1 RNA using a real-time PCR, m2000rt assay. J Virol Methods 2012;181(2):177-181. [http://dx.doi.org/10.1016/j.jviromet.2012.02.006]

[15.] World Health Organization. 2013. Consolidated guidelines on the use of antiretroviral drugs for treating and preventing HIV infection: Recommendations for a public health approach. http://www.who.int/hiv/pub/guidelines/arv2013/download/en/index.html (accessed 15 October 2015).

Accepted 5 October 2015.

F Erba, (1) MSc; D Brambilla, (2) MSc; S Ceffa, (2) MSc; F Ciccacci, (2,3) MD; R Luhanga, (4) BSc; Z Sidumo, (5) BSc; L Palombi, (6) MD; S Mancinelli, (6) MD; M C Marazzi, (7) MD; M Andreotti, (8) MSc; M Giuliano, (8) MD

(1) Department of Clinical Science and Translational Medicine, University of Roma Tor Vergata, Rome, Italy

(2) DREAM Programme, Community of Sant'Egidio, Rome, Italy

(3) Department of Infectious Diseases, University of La Sapienza, Rome, Italy

(4) DREAM Programme, Community of Sant'Egidio, DREAM Health Centre, Blantyre, Malawi

(5) DREAM Programme, Community of Sant'Egidio, Centro Para Crianca, Maputo, Mozambique

(6) Department of Biomedicine and Prevention, University of Roma Tor Vergata, Rome, Italy

(7) Department of Community Health, LUMSA University, Rome, Italy

(8) Department of Therapeutic Research and Medicines Evaluation, Istituto Superiore di Sanita, Rome, Italy

Corresponding author: M Andreotti (mauro.andreotti@iss.it)
Table 1. Sensitivity, specificity, positive and negative
predictive values (95% confidence intervals) of DBS
according to the limit of detection of the assay (A) and the
threshold of 1 000 copies/mL (B)

Plasma

                       [greater
                       than or
A                      equal to]   <40
                       copies/mL   copies/mL

DBS    >40 copies/mL   131         1

       <40 copies/mL   46          99

       Total           177         100

Plasma

A                      Total

DBS    >40 copies/mL   132         Sensitivity 74%
                                   (66.9 - 80.3)

       <40 copies/mL   145         Specificity 99%
                                   (94.5 - 99.8)

       Total           277         PPV 99.2%
                                   (95.8 - 99.9)

                                   NPV 68.3%
                                   (60.0 - 75.8)

Plasma

                       [greater
                       than or
                       equal to]
                       1 000       <1 000
B                      copies/mL   copies/mL

DBS    >1 000          130         2
       copies/mL

       <1 000          8           137
       copies/mL

       Total           138         139

                       Total
B

DBS    >1 000          132         Sensitivity
       copies/mL                   94.2%
                                   (88.9 - 97.5)

       <1 000          145         Specificity
       copies/mL                   98.6 %
                                   (94.9 - 99.8)

       Total           277         PPV 98.5%
                                   (94.6 - 99.8)

                                   NPV 94.5%
                                   (89.4 - 97.6)

PPV = positive predictive value; NPV = negative predictive value.
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Title Annotation:RESEARCH
Author:Erba, F.; Brambilla, D.; Ceffa, S.; Ciccacci, F.; Luhanga, R.; Sidumo, Z.; Palombi, L.; Mancinelli,
Publication:South African Medical Journal
Geographic Code:6MOZA
Date:Dec 1, 2015
Words:2811
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