Articles from International Journal of Genomics (January 1, 2018)

Title	Author	Type	Words
Advancing Genomics for Drug Development and Safety Evaluation.	Liu, Zhichao; Xu, Joshua; Wen, Zhining		769
Calibrating Transcriptional Activity Using Constitutive Synthetic Promoters in Mutants for Global Regulators in Escherichia coli.	Sanches-Medeiros, Ananda; Monteiro, Lummy Maria Oliveira; Silva-Rocha, Rafael		5348
Changes in miRNA Gene Expression during Wound Repair in Differentiated Normal Human Bronchial Epithelium.	Narozna, Beata; Langwinski, Wojciech; Jackson, Claire; Lackie, Peter M.; Holloway, John W.; Stachowi		4695
Characterization of Transcription Termination-Associated RNAs: New Insights into their Biogenesis, Tailing, and Expression in Primary Tumors.	Laudadio, Ilaria; Formichetti, Sara; Gioiosa, Silvia; Klironomos, Filippos; Rajewsky, Nikolaus; Maci		7303
Classification of Complete Proteomes of Different Organisms and Protein Sets Based on Their Protein Distributions in Terms of Some Key Attributes of Proteins.	Guo, Hao-Bo; Ma, Yue; Tuskan, Gerald A.; Yang, Xiaohan; Guo, Hong		8301
Clustering Pattern and Functional Effect of SNPs in Human miRNA Seed Regions.	He, Sha; Ou, Haiyan; Zhao, Cunyou; Zhang, Jian		2802
Common DNA Variants Accurately Rank an Individual of Extreme Height.	Sexton, Corinne E.; Ebbert, Mark T.W.; Miller, Ryan H.; Ferrel, Meganne; Tschanz, Jo Ann T.; Corcora		4664
Comparative Genomics Analysis of Plasmid pPV989-94 from a Clinical Isolate of Pantoea vagans PV989.	Xu, Lei; Yin, Min; Zhu, Tingyuan; Liu, Yabo; Ying, Yuanyuan; Lu, Junwan; Lin, Chaoqing; Ying, Jianch		5373
Comparative Genomics of the First and Complete Genome of "Actinobacillus porcitonsillarum" Supports the Novel Species Hypothesis.	Dona, Valentina; Perreten, Vincent		4855
Comparative Transcriptome Analysis of Temperature-Induced Green Discoloration in Garlic.	Li, Ningyang; Qiu, Zhichang; Lu, Xiaoming; Shi, Bingchao; Sun, Xiudong; Tang, Xiaozhen; Qiao, Xuguan		4948
Data Mining Mycobacterium tuberculosis Pathogenic Gene Transcription Factors and Their Regulatory Network Nodes.	Yuan, Guangxin; Bai, Yu; Zhang, Yuhang; Xu, Guangyu	Report	4805
Detecting Differentially Variable MicroRNAs via Model-Based Clustering.	Li, Xuan; Fu, Yuejiao; Wang, Xiaogang; DeMeo, Dawn L.; Tantisira, Kelan; Weiss, Scott T.; Qiu, Weili		6838
Differential Expression Profiling of Long Noncoding RNA and mRNA during Osteoblast Differentiation in Mouse.	Kim, Minjung; Yu, Youngseok; Moon, Ji-Hoi; Koh, InSong; Lee, Jae-Hyung		7776
Discovery of Novel Caeridins from the Skin Secretion of the Australian White's Tree Frog, Litoria caerulea.	Li, Lei; Wu, Qing; Wang, Xi; Lu, Huimin; Xi, Xinping; Zhou, Mei; Watson, Chris J.; Chen, Tianbao; Wa		9031
Endometriosis Malignant Transformation: Epigenetics as a Probable Mechanism in Ovarian Tumorigenesis.	He, Jiaxing; Chang, Weiqin; Feng, Chunyang; Cui, Manhua; Xu, Tianmin		10853
Ensemble Methods with Voting Protocols Exhibit Superior Performance for Predicting Cancer Clinical Endpoints and Providing More Complete Coverage of Disease-Related Genes.	Jing, Runyu; Liang, Yu; Ran, Yi; Feng, Shengzhong; Wei, Yanjie; He, Li		9213
Expanding the miRNA Transcriptome of Human Kidney and Renal Cell Carcinoma.	Sage, Adam P.; Minatel, Brenda C.; Marshall, Erin A.; Martinez, Victor D.; Stewart, Greg L.; Enfield		6536
Exploring Long Noncoding RNAs in Glioblastoma: Regulatory Mechanisms and Clinical Potentials.	Zeng, Tao; Li, Lei; Zhou, Yan; Gao, Liang		10158
Expression Analysis of Nitrogen Metabolism-Related Genes Reveals Differences in Adaptation to Low-Nitrogen Stress between Two Different Barley Cultivars at Seedling Stage.	Chen, Zhiwei; Liu, Chenghong; Wang, Yifei; He, Ting; Gao, Runhong; Xu, Hongwei; Guo, Guimei; Li, Yin		5977
Expression Characterization of Six Genes Possibly Involved in Gonad Development for Stellate Sturgeon Individuals (Acipenser stellatus, Pallas 1771).	Burcea, Alexandru; Popa, Gina-Oana; Florescu, Iulia Elena, "Gune"; Maereanu, Marilena; Dudu, Andreea		7017
Gene Coexpression Network Comparison via Persistent Homology.	Duman, Ali Nabi; Pirim, Harun		6099
Gene Variation of Endoplasmic Reticulum Aminopeptidases 1 and 2, and Risk of Blood Pressure Progression and Incident Hypertension among 17,255 Initially Healthy Women.	Zee, Robert Y.L.; Rivera, Alicia; Inostroza, Yaritza; Ridker, Paul M.; Chasman, Daniel I.; Romero, J		6782
Genome Analysis of Rhodococcus Sp. DSSKP-R-001: A Highly Effective [beta]-Estradiol-Degrading Bacterium.	Zhao, Hongyan; Tian, Kejian; Qiu, Qing; Wang, Yu; Zhang, Hongyan; Ma, Shuang; Jin, Shenbao; Huo, Hon		5455
Genome-Wide Expression Profiles of Hemp (Cannabis sativa L.) in Response to Drought Stress.	Gao, Chunsheng; Cheng, Chaohua; Zhao, Lining; Yu, Yongting; Tang, Qing; Xin, Pengfei; Liu, Touming;		8485
Genome-Wide Identification and Characterization of Fox Genes in the Honeybee, Apis cerana, and Comparative Analysis with Other Bee Fox Genes.	Nie, Hongyi; Geng, Haiyang; Lin, Yan; Xu, Shupeng; Li, Zhiguo; Zhao, Yazhou; Su, Songkun		6411
Genome-Wide Identification, Phylogeny, and Expression Analysis of ARF Genes Involved in Vegetative Organs Development in Switchgrass.	Wang, Jianli; Wu, Zhenying; Shen, Zhongbao; Bai, Zetao; Zhong, Peng; Ma, Lichao; Pan, Duofeng; Zhang		7806
Genomic and Postgenomic Approaches to Understand Environmental Microorganisms.	Guazzaroni, Maria-Eugenia; Platero, Raul Alberto; Silva-Rocha, Rafael		748
Genomics Approach of the Natural Product Pharmacology for High Impact Diseases.	Wang, Yong; Feng, Qin; He, Peijian; Zhu, Lixin; Chen, Guoxun		999
Identification of Novel ARSA Mutations in Chinese Patients with Metachromatic Leukodystrophy.	Chen, Li; Yan, Huifang; Cao, Binbin; Wu, Ye; Gu, Qiang; Xiao, Jiangxi; Yang, Yanling; Yang, Huixia;		4997
Identification of Novel Causal FBN1 Mutations in Pedigrees of Marfan Syndrome.	Wang, Yueli; Li, Xiaoyan; Li, Rongjuan; Yang, Ya; Du, Jie		3776
Identification of Wheat Inflorescence Development-Related Genes Using a Comparative Transcriptomics Approach.	Ma, Lingjie; Ma, Sheng-Wei; Deng, Qingyan; Yuan, Yang; Wei, Zhaoyan; Jia, Haiyan; Ma, Zhengqiang		9566
Insights into the Genome Sequence of Chromobacterium amazonense Isolated from a Tropical Freshwater Lake.	Santos, Alexandre Bueno; Costa, Patricia Silva; do Carmo, Anderson Oliveira; Fernandes, Gabriel da R		5897
ISOdb: A Comprehensive Database of Full-Length Isoforms Generated by Iso-Seq.	Xie, Shang-Qian; Han, Yue; Chen, Xiao-Zhou; Cao, Tai-Yu; Ji, Kai-Kai; Zhu, Jie; Ling, Peng; Xiao, Ch		2450
Lingguizhugan Decoction Protects against High-Fat-Diet-Induced Nonalcoholic Fatty Liver Disease by Alleviating Oxidative Stress and Activating Cholesterol Secretion.	Yang, Lili; Lin, Weili; Nugent, Colleen A.; Hao, Shijun; Song, Haiyan; Liu, Tao; Zheng, Peiyong		6434
Marker-Assisted Introgression of Saltol QTL Enhances Seedling Stage Salt Tolerance in the Rice Variety "Pusa Basmati 1".	Singh, Vivek Kumar; Singh, Brahma Deo; Kumar, Amit; Maurya, Sadhna; Krishnan, Subbaiyan Gopala; Vino		10267
Meta-Analysis of Genome-Wide Association Studies Identifies Novel Functional CpG-SNPs Associated with Bone Mineral Density at Lumbar Spine.	Qiu, Chuan; Shen, Hui; Fu, Xiaoying; Xu, Chao; Deng, Hongwen		7452
Metabolic Pathway Genes Associated with Susceptibility Genes to Coronary Artery Disease.	Lu, Heng; Chen, Yi; Li, Linlin		6816
Metagenomic Approaches for Understanding New Concepts in Microbial Science.	Alves, Luana de Fatima; Westmann, Caua Antunes; Lovate, Gabriel Lencioni; de Siqueira, Guilherme Mar		11781
Multiple Regression Analysis Reveals MicroRNA Regulatory Networks in Oryza sativa under Drought Stress.	Chen, Jiajia; Li, Liangzhi		6990
Multitarget Effects of Danqi Pill on Global Gene Expression Changes in Myocardial Ischemia.	Wang, Qiyan; Meng, Hui; Zhang, Qian; Shi, Tianjiao; Zhang, Xuefeng; Shao, Mingyan; Lu, Linghui; Wang		6169
Mutations in Homocysteine Metabolism Genes Increase Keratin N-Homocysteinylation and Damage in Mice.	Borowczyk, Kamila; Wroblewski, Jacek; Suliburska, Joanna; Akahoshi, Noriyuki; Ishii, Isao; Jakubowsk		4989
New Genomic Approaches to Enhance Biomass Degradation by the Industrial Fungus Trichoderma reesei.	de Paula, Renato Graciano; Antonieto, Amanda Cristina Campos; Ribeiro, Liliane Fraga Costa; Carraro,		13288
Noncoding RNAs and Base Modifications: Epigenomic Players Implicated in Neurological Disorders and Tumorigenesis.	Li, Yujing; Park, Changwon; Jiang, Hong; Li, Xuekun; Vellon, Luciano		1159
Noncoding RNAs in Health and Disease.	Barbagallo, Davide; Vittone, Gaetano; Romani, Massimo; Purrello, Michele		1459
Nonredundant, Highly Connected MicroRNAs Control Functionality in Breast Cancer Networks.	de Anda-Jauregui, Guillermo; Espinal-Enriquez, Jesus; Drago-Garcia, Diana; Hernandez-Lemus, Enrique		4527
Overexpression of a New Zinc Finger Protein Transcription Factor OsCTZFP8 Improves Cold Tolerance in Rice.	Jin, Yong-Mei; Piao, Rihua; Yan, Yong-Feng; Chen, Mojun; Wang, Ling; He, Hongxia; Liu, Xiaoxiao; Gao		7569
Prediction of Blood Lipid Phenotypes Using Obesity-Related Genetic Polymorphisms and Lifestyle Data in Subjects with Excessive Body Weight.	Ramos-Lopez, Omar; Riezu-Boj, Jose I.; Milagro, Fermin I.; Cuervo, Marta; Goni, Leticia; Martinez, J		7030
Protein Engineering Strategies to Expand CRISPR-Cas9 Applications.	Ribeiro, Lucas F.; Ribeiro, Liliane F.C.; Barreto, Matheus Q.; Ward, Richard J.		9391
Regulation of Long Noncoding RNAs Responsive to Phytoplasma Infection in Paulownia tomentosa.	Fan, Guoqiang; Cao, Yabing; Wang, Zhe		10163
Relationship of SNP rs2645429 in Farnesyl-Diphosphate Farnesyltransferase 1 Gene Promoter with Susceptibility to Lung Cancer.	Dehghani, Mehdi; Samani, Zahra; Abidi, Hassan; Manzouri, Leila; Mahmoudi, Reza; Teshnizi, Saeed Hoss		4915
Revisiting Key Entry Routes of Human Epidemic Arboviruses into the Mainland Americas through Large-Scale Phylogenomics.	Campos, Tulio De Lima; Duraes-Carvalho, Ricardo; Rezende, Antonio Mauro; de Carvalho, Otavio Valerio		6350
SCAR Marker for Gender Identification in Date Palm (Phoenix dactylifera L.) at the Seedling Stage.	Qurainy, Fahad Al-; Ameri, Abdulhafed A. Al-; Khan, Salim; Nadeem, Mohammad; Gaafar, Abdel-Rhman Z.;		3848
Shiftwork-Mediated Disruptions of Circadian Rhythms and Sleep Homeostasis Cause Serious Health Problems.	Khan, Suliman; Duan, Pengfei; Yao, Lunguang; Hou, Hongwei		8122
Systems Pharmacology-Based Approach of Connecting Disease Genes in Genome-Wide Association Studies with Traditional Chinese Medicine.	Kim, Jihye; Yoo, Minjae; Shin, Jimin; Kim, Hyunmin; Kang, Jaewoo; Tan, Aik Choon		5784
The [beta]-Lactamase Gene Profile and a Plasmid-Carrying Multiple Heavy Metal Resistance Genes of Enterobacter cloacae.	Wu, Chongyang; Lin, Chaoqin; Zhu, Xinyi; Liu, Hongmao; Zhou, Wangxiao; Lu, Junwan; Zhu, Licheng; Bao		8433
The Challenges and Opportunities in the Clinical Application of Noncoding RNAs: The Road Map for miRNAs and piRNAs in Cancer Diagnostics and Prognostics.	Krishnan, Preethi; Damaraju, Sambasivarao		16362
The Effect of Canertinib on Sensitivity of Cytotoxic Drugs in Tamoxifen-Resistant Breast Cancer Cells In Vitro.	Gomaa, Hesham A.M.; Ali, Asmaa T.; Gabbar, M. Abdel; Kandeil, M.A.		4366
The Effect of Citalopram on Genome-Wide DNA Methylation of Human Cells.	Kanherkar, Riya R.; Getachew, Bruk; Ben-Sheetrit, Joseph; Varma, Sudhir; Heinbockel, Thomas; Tizabi,		7902
The Endophytic Bacterial Microbiota Associated with Sweet Sorghum (Sorghum bicolor) Is Modulated by the Application of Chemical N Fertilizer to the Field.	Mareque, Cintia; da Silva, Thais Freitas; Vollu, Renata Estebanez; Beracochea, Martin; Seldin, Lucy;		7495
The Genetic Diversity and Geographic Differentiation of the Wild Soybean in Northeast China Based on Nuclear Microsatellite Variation.	Zhao, Hongkun; Wang, Yumin; Xing, Fu; Liu, Xiaodong; Yuan, Cuiping; Qi, Guangxun; Guo, Jixun; Dong,		6234
The Influence of Metabolic Syndrome and Sex on the DNA Methylome in Schizophrenia.	Burghardt, Kyle J.; Goodrich, Jacyln M.; Lines, Brittany N.; Ellingrod, Vicki L.		8750
The Maize Corngrassl miRNA-Regulated Developmental Alterations Are Restored by a Bacterial ADP-Glucose Pyrophosphorylase in Transgenic Tobacco.	Ligaba-Osen, Ayalew; DiMarco, Kay; Richard, Tom L.; Hankoua, Bertrand		8958
The Progress of Methylation Regulation in Gene Expression of Cervical Cancer.	Feng, Chunyang; Dong, Junxue; Chang, Weiqin; Cui, Manhua; Xu, Tianmin		8712
The YABBY Genes of Leaf and Leaf-Like Organ Polarity in Leafless Plant Monotropa hypopitys.	Shchennikova, Anna V.; Slugina, Marya A.; Beletsky, Alexey V.; Filyushin, Mikhail A.; Mardanov, Andr		10757
Topological Characterization of Human and Mouse [m.sup.5]C Epitranscriptome Revealed by Bisulfite Sequencing.	Wei, Zhen; Panneerdoss, Subbarayalu; Timilsina, Santosh; Zhu, Jingting; Mohammad, Tabrez A.; Lu, Zhi		9911
Transcriptome Analysis of Rainbow Trout (Oncorhynchus mykiss) Eggs Subjected to the High Hydrostatic Pressure Treatment.	Gurgul, Artur; Pawlina-Tyszko, Klaudia; Bugno-Poniewierska, Monika; Szmatola, Tomasz; Jasielczuk, Ig		4952
Transcriptome Analysis of the Thymus in Short-Term Calorie-Restricted Mice Using RNA-seq.	Ulu, Zehra Omeroglu; Ulu, Salih; Dogan, Soner; Tuna, Bilge Guvenc; Ozgenturk, Nehir Ozdemir		5977
Transcriptome Analysis Reveals Dynamic Fat Accumulation in the Walnut Kernel.	Zhao, Shuang; Zhang, Xuemei; Su, Yanping; Chen, Yilan; Liu, Yang; Sun, Meng; Qi, Guohui		7932
Transcriptome and Expression Profiling Analysis of Recalcitrant Tea (Camellia sinensis L.) Seeds Sensitive to Dehydration.	Jin, Xiaofang; Liu, Dandan; Ma, Linlong; Gong, Ziming; Cao, Dan; Liu, Yanli; Li, Yeyun; Jiang, Chang		5779
Transcriptome Comparison Reveals Distinct Selection Patterns in Domesticated and Wild Agave Species, the Important CAM Plants.	Huang, Xing; Wang, Bo; Xi, Jingen; Zhang, Yajie; He, Chunping; Zheng, Jinlong; Gao, Jianming; Chen,		5946
Transcriptomic Changes in Broiler Chicken Hypothalamus during Growth and Development.	Piorkowska, Katarzyna; Zukowski, Kacper; Poltowicz, Katarzyna; Nowak, Joanna; Wojtysiak, Dorota; Der		5850
Transcriptomic Profiling of Fruit Development in Black Raspberry Rubus coreanus.	Chen, Qing; Liu, Xunju; Hu, Yueyang; Sun, Bo; Hu, Yaodong; Wang, Xiaorong; Tang, Haoru; Wang, Yan		7492
Transposable Elements in the Organization and Diversification of the Genome of Aegilops speltoides Tausch (Poaceae, Triticeae).	Raskina, Olga		6246
Urinary Metabolomic Study of Chlorogenic Acid in a Rat Model of Chronic Sleep Deprivation Using Gas Chromatography-Mass Spectrometry.	Ma, Wei-ni; Zhou, Ming-mei; Gou, Xiao-jun; Zhao, Le; Cen, Fang; Xu, Ying; Shen, Hong-yi		6812
Whole Exome Sequencing Uncovers Germline Variants of Cancer-Related Genes in Sporadic Pheochromocytoma.	Urbini, Milena; Nannini, Margherita; Astolfi, Annalisa; Indio, Valentina; Vicennati, Valentina; De L		5106
Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing.	Araki, Kazuo; Aokic, Jun-ya; Kawase, Junya; Hamada, Kazuhisa; Ozaki, Akiyuki; Fujimoto, Hiroshi; Yam		7320
Whole-Exome Sequencing Identifies One De Novo Variant in the FGD6 Gene in a Thai Family with Autism Spectrum Disorder.	Thongnak, Chuphong; Hnoonual, Areerat; Tangviriyapaiboon, Duangkamol; Silvilairat, Suchaya; Puangpet		4518
Whole-Genome Sequencing and Comparative Genome Analysis Provided Insight into the Predatory Features and Genetic Diversity of Two Bdellovibrio Species Isolated from Soil.	Oyedara, Omotayo Opemipo; Segura-Cabrera, Aldo; Guo, Xianwu; Elufisan, Temidayo Oluyomi; Gonzalez, R		6618