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Genetic similarities among four species of the Plectranthus (L'Her.) genus/ Similaridade genetica de quatro especies do genero Plectranthus.

Introduction

The Lamiacea family is extended, widely spread and adapted to nearly every habitat. It is characterized by the occurrence of various aromatic and medicinal species and the presence of essential oils produced in the glandular trichomes or scales which cover stems and leaves (WEBERLING; SCHWANTES, 1986). The Plectranthus genus belongs to the Mepetoideae subfamily, Ocimaeae tribe, Lamiaceae family and is thought to be one of the richest in essential oils, which include mono and sesquiterpenes as their main components. This genus includes many plants of medicinal and economic interest; their chemical composition, however, is little known (ABDEL-MOGIB et al., 2002).

Several species belonging to the Plectranthus genus are used in popular medicine for their antidispeptic, analgesic and digestion-stimulating properties (VIGANO et al., 2007). Due to the presence of bitter substances, the leaf macerate in aqueous solution has a hiposecretory gastric activity, which acts by reducing the production of gastric juice, in addition to decreasing its acidity, and can be used in the treatment of gastritis, dyspepsia and heartburn (SIMOES et al., 1998).

According to Lorenzi and Matos (2002), there are four species of the Plectrantrus genus, popularly known as boldo, which have medicinal properties. Plectranthus barbatus Andrews and Plectranthus grandis (Cramer) R.H. Willemse, labeled respectively false boldo and 'boldo-grande', are very similar and, for this reason, usually mixed up; both are used for the same purpose in popular medicine (LORENZI; MATTOS, 2002; MILANEZE-GUTIERRE et al., 2007) . Plectranthus Neochilus (Schlechtre) ('boldo gamba') is a highly aromatic herbal plant according to Lorenzi and Matos (2002), used similarly to Plectranthus barbatus. According to Lukhoba et al. (2006), Plectranthus amboinicus (Lour) Spreng. also has medicinal properties similar to those of the previously mentioned species.

Because of their taxonomic similarities, several terminologies have been used to refer to the same species of the Plectranthus genus, which interferes with the collection of information about the ethnobotanic use of this genus. Besides, species of the Plectranthus genus usually used for medicinal purposes show a number of synonyms (LUKHOBA et al., 2006).

One alternative that may contribute to solving the terminology problems with species of the Plectranthus genus is the molecular analysis of the bold plant genome. Several molecular marker techniques have made it possible to accurately point out DNA genetic variations of organisms, thus elucidating synonymy and homonymy cases when an estimate of the morpho-phenologic characteristics does not show polymorphism. When molecular markers are used, the likelihood of genotype identification greatly increases for all species (MULCAHY et al., 1993; OLIVEIRA et al., 2008) . To illustrate this, studies with Vitis rupestris Scheele (PAVEK et al., 2003), Camellia sinensis (L) O. Kuntze (KAUNDUN; PARK, 2002), Malpighia emargunata D.C. (SALLA et al., 2002), Campanula microdonta Koidz (OIKI et al., 2001), Orchidaceae (SUN; WONG, 2001), Ocimeae and Libiatae (PATON et al., 2004) and Commelina benghalensis L. (VIEIRA et al., 2007) can be mentioned.

The Random Amplified Polymorphic DNA (RAPD) technique, based on the polymerase chain reaction (PCR), which promotes DNA sequence amplification, offers advantages for being relatively simple and fast; furthermore, it does not demand previous information on the target sequence because it uses random sequence short primers (WELSH; MCCLELLAND, 1990; WILLIAMS et al., 1990; NAKAJIMA et al., 1998).

Due to the difficulty in finding morphophenologic markers to discriminate boldo species, the aim of the present study was to evaluate the interspecific genetic diversity of four species of the Plectranthus genus (P. grandis, P. barbatus, P. neochilus and P. amboinicus) and the intraspecific diversity of P. barbatus, collected from different locations in southern Brazil by means of the RAPD technique. Thus we intended to investigate the occurrence of DNA markers for one or more boldo species so that they could be properly identified.

Material and methods

Four Plectranthus species from different locations (Table 1) were used, with their botany identification confirmed by means of a specific identification key for Lamiaceae. A specimen of each species, collected by biologist Juliana de Magalhaes Bandeira, was stored at the Botany Department PEL herbarium of the Federal University of Pelotas, registered under numbers 24586 (P. grandis), 24587 (P. barbatus), 24585 (P. neochilus) and 24584 (P. amboinicus).

Approximately 150 mg young leaves (from the second or third node, counting from the apex) of the Plectranthus species under study were collected and stored at -80[degrees]C until sample processing for DNA extraction.

Genomic DNA was extracted from previously isolated Plectranthus species leaves by the CTAB 2% method, according to Doyle and Doyle (1990). DNA quantification was performed following electrophoresis in 0.8% agarose gel, and comparing band intensity to [lambda] DNA/Hind III fragments at a 0.5 [micro]g [micro][L.sup.-1] concentration, later diluted in MlilliQ water to an approximate 10 ng [micro][L.sup.-1] concentration, so that it could be used for the PCR (Polymerase Chain Reaction).

Thirty-six primers were used for the PCRs, namely: Operon Kit decamers--OPX (01 to 20), OPA (01 and 07), OPAC (07, 16 and 19), OPB (01, 05, 18, 19 and 20), OPF (07 and 19), OPI 07 and UBC (50, 53, 410) from British Columbia University.

The amplification reactions were performed in a model PTC-100 MJ Research Inc. thermocycler following the thermal profile: first cycle at 94[degrees]C for 2 min. 30 seconds, 36[degrees]C for 30 seconds and 72[degrees]C for 2 min.; second cycle repeated 19 times at 94[degrees]C for 20 seconds, 36[degrees]C for 15 seconds, 45[degrees] C for 15 seconds and 72[degrees]C for 2 min.; third cycle repeated 18 times at 94[degrees]C for 30 seconds, 36[degrees]C for 15 seconds, 45[degrees]C for 45 seconds and 72[degrees]C for 2 min., and a final cycle at 72[degrees]C for 10 min.

PCR reactions were performed in 0.2 mL polypropylene tubes containing 2.5 [micro]L 10 X buffer (10 mM Tris-HCl pH 9.5, 50 mM KCl), 2.0 mM Mg[Cl.sup.2], 180 [micro]M of each dNTP, 1.2 [micro]M primer, 1U Taq DNA polymerase - Invitrogen, 20 ng genomic DNA and enough sterilized Milli Q water to obtain 25 [micro]L.

Amplification reproducibility material was tested twice using DNA originated from two distinct extractions of all genotypes under study (Table 1).

PCR material was separated by horizontal electrophoresis in 1.5% 65 V agarose gel for 90 min. After electrophoresis, the gel was immersed in ethidium bromide (5 [micro]g m[L.sup.-1]) and analyzed under UV light in an E-BOX-100 model Vilber Lourmat photodocumentation system.

PCR reaction fragments were recorded as present (1) or absent (0), making up a binary data matrix. For the genetic similarity calculation, the Dice coefficient (NEI; LI, 1979) was used. Based on the similarity matrix, the cluster analysis was done by the Unweighted Pair-group Method with Arithmetic Means (UPGMA) for further dendrogram elaboration with the support of version 2.1 NTSYSpc software (ROHLF, 2000). Cluster data were used for the calculation of the cophenetic matrix in order to check dendrogram representation in relation to similarity data, measured by the correlation coefficient (r). Besides, with the use of the Winboot computer software, the binary data matrix was used for bootstrapping analyses (with 1000 replications), searching to infer the confidence of each cluster graphically represented in the dendrogram.

Results and discussion

Of the 36 tested primers, 27 produced polymorphic bands out of 284 amplified fragments; of these, only 29 (10.21%) were monomorphic and 255 (89.79%) were polymorphic (Table 2). The mean polymorphism generated by each primer was 9.44. Some polymorphic products are shown in Figure 1, where an approximately 1350 pb band generated by the OPX20 primer can be observed (Figure 1A). This band permits the differentiation of P. amboinicus from the other genotypes; in addition, two bands of approximately 1350 and 700 pb generated by the OPX19 primer (Figure 1B) differentiate P. grandis from P. barbatus.

[FIGURE 1 OMITTED]

In the electrophoretic profiles of the instraspecific analysis of P. barbatus plants from different locations, polymorphism was observed in 8 out of 27 primers used, resulting in a 92 band total, 11 of which (11.96%) were polymorphic (Table 3).

From the polymorphisms obtained by 27 RAPD markers, a 53% mean genetic similarity was identified and, in the data analysis between the similarity and cophenetic matrixes, a 0.99 correlation value (r) was found, which demonstrates a high data representation in the dendrogram.

[FIGURE 2 OMITTED]

Therefore, it became evident by the present study that the use of RAPD-type markers allowed a clear interspecific separation of the four analyzed Plectranthus species (Figure 2).

The bootstrapping values in most nodes in the dendrogram were also high, which indicates the consistency and the correct separation among the different species of the Plectranthus genus and P. barbatus genotypes analyzed. The lowest bootstrapping values were those between P. barbatus from Pelotas and P. barbatus from Florianopolis (49.1) and between genotypes of P. barbatus from Passo Fundo and P. barbatus from the Passo Fundo Indian Reservation (51.7) (Figure 2). On the other hand, these two genotypes presented a higher genetic similarity (99.61%), which can probably be accounted for by the proximity of these areas (Table 4).

Considering that Plectranthus spp. are crosspollinated plants, a high interspecific genetic variability was expected. By dendrogram inference (Figure 2), even on observing a clear separation among the studied genotypes, P. grandis and P. barbatus were found to be genetically closest, which points to an eventual common origin. A similar pattern was found between P. amboinicus and P. neochilus, which showed about 80% genetic similarity; however, they showed a low similarity in relation to other species analyzed (Table 4).

According to Lorenzi and Matos (2002), P. barbatus and P. grandis are morphologically very similar, and because of this they are easily mixed up. Luckhoba et al. (2006) did an ethnobotany review with 62 Plectranthus species and found that about 30% of the literary citations consider P. grandis synonymous with P. barbatus, mistaking the two species for one. In the present study, a clear separation between the two species is evidence which is in agreement with a classification by Passinho et al. (2000) who, by means of the AFLP (Amplified Fragment Length Polymorphism) technique, demonstrated the occurrence of genetic variability between the two species, attesting to its authenticity.

Twenty-four primers have permitted the differentiation between the P. grandis and P. barbatus species, presenting a total of 164 bands where 37.20% were polymorphic and 62.80%, monomorphic; among these, OPX01 primer, with 8 polymorphic bands, showed the highest polymorphism (Figure 1D), while 32.84% of the 134 bands generated from 21 RAPD primers allowed the differentiation between P. neochilus and P. amboinicus.

According to Casas et al. (1999), molecular markers are highly used both to study the genetic variability among species and to identify the similarity among different intraspecific accesses. However, other molecular approaches can be used such as that by Paton et al. (2004) who, through phylogenetic analysis of the TrnL-TrnF and rps16 regions, devised a dendrogram that connects the P. barbatus and P. amboinicus species at a 67% bootstrapping value. In the present paper, a 53% mean genetic similarity was found by which the four species were clearly separated in a first subgroup represented by P. grandis and P. barbatus, while P. neochilus and P. amboinicus are included in a second subgroup (Figure 2). This clustering is directly related to the type of genomic approach, once the RADP analysis detects random DNA fragments in the genome. In a study by Paton et al. (2004), specific sequences were analyzed which, when referring to related species, can perform this type of classification.

Although it is estimated that a minimum of 12 polymorphic primers are needed for the genetic polymorphic analysis using the Dice coefficient (LANDRY; LAPOINT, 1996) probably ifmore primers had been used in addition to the 27 used in this research, a higher intraspecific genetic variability would have been detected, such as that found among P. barbatus genotypes.

Although RAPD is thought to be a low reproducibility technique, when correctly used and compared to other molecular techniques, it is efficient in genetic variability studies. Besides, it is the fastest, simplest technique, requires less DNA and is relatively low-cost (UPADHYAY et al., 2004).

This research has confirmed the applicability of the RAPD technique in identifying specific molecular markers in order to discriminate existing synonymy cases among boldo species, in view of the difficulty in characterizing them through morphophenological markers. Because the Plectranthus genus has several species that are empirically used in popular medicine, the scientific orientation as to their correct differentiation will contribute to studies that aim at a better exploitation of those plants with a higher potential for drug production. Furthermore, like RAPD, other molecular marker techniques that facilitate correct genotype identification will be extremely useful for germoplasm correct use. The genetic variability evaluation in this article is the first step towards mapping characteristics of interest for future genetic improvement research.

DOI: 10.4025/actascibiolsci.v32il.880

Acknowledgements

We wish to thank Capes for financial support, and we particularly thank Prof. Delvino Nolla of Universidade de Passo Fundo (UPF) (Passo Fundo, Rio Grande do Sul State) and Alesio dos Passos Santos from Farmacia Natureza (Florianopolis, Santa Catarina State) for the kindly granted P. barbatus and P. grantis seedlings.

Received on March 13, 2008.

Accepted on Frebruary 27, 2009.

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Juliana de Magalhaes Bandeira *, Valmor Joao Bianchi, Silvia Rubin, Jose Antonio Peters and Eugenia Jacira Bolacel Braga

Laboratorio de Cultura de Tecidos de Plantas, Departamento de Botanica, Instituto de Biologia, Universidade Federal de Pelotas, Cx. Postal 354, 96010-900, Pelotas, Rio Grande do Sul, Brazil. Author for correspondence. E-mail: bandeira_jm@hotmail.com
Table 1. Plectranthus genotypes used in the genetic similarity
analysis and their respective collection sites.

Code     Genotypes      Source of material

PgPel    P. grandis     Pelotas/Rio Grande do Sul State
PgFlo    P. grandis     Florianopolis/Santa Catarina State
PnPel    P. neochilus   Pelotas/ Rio Grande do Sul State
PnPOA    P. neochilus   Porto Alegre/Rio Grande do Sul State
PaPel    P.amboinicus   Pelotas/Rio Grande do Sul State
PbPel    P. barbatus    Pelotas/Rio Grande do Sul State
PbPOA    P. barbatus    Porto Alegre/Rio Grande do Sul State
PbPF     P. barbatus    Passo Fundo/Rio Grande do Sul State
PbRIPF   P. barbatus    Passo Fundo/ Rio Grande do Sul State
                        Indian Reservation
PbFlo    P. barbatus    Florianopolis/Santa Catarina State

Table 2. Polymorphism detected by selected primers for RAPD
reactions of the four species of the Plectranthus genus.

Primer   Number of amplified fragments
         Monomorphic   Polymorphic   Total
           bands          bands

OPX01        2             15          17
OPX05        0              6           6
OPX06        0             13          13
OPX07        0             17          17
OPX08        0             10          10
OPX09        1             12          13
OPX12        3             18          21
OPX13        1              2           3
OPX14        1              7           8
OPX16        0              6           6
OPX17        0              8           8
OPX18        2             10          12
OPX20        0             11          11
OPA01        3              8          11
OPA07        2              7           9
OPAC07       2              7           9
OPAC19       2              6           8
OPB01        0             13          13
OPB05        1              8           9
OPB18        2             11          13
OPB19        1             10          11
OPB20        1              7           8
OPF07        0             11          11
OPF19        1              5           6
OPI07        3             12          15
UBC53        1              8           9
UBC410       0              7           7
Total       29            255         284

Table 3. Polymorphism dectected by RAPD primers among P.
barbatus genotypes from five different locations.

         Number of amplified fragments
Primer   Monomorphic   Polymorphic   Total
            bands         bands

OPX08         9              1         10
OPX09        12              1         13
OPX12        20              1         21
OPX20         7              4         11
OPAC07        8              1          9
OPB05         8              1          9
OPB20         7              1          8
OPF07        10              1         11
Total        81             11         92

Table 4. Genetic similarity values calculated by the Dice coefficient
using polymorphism data generated by 27 RAPD primers.

P.grandis/Pel      1.000
P.grandis/Flor     0.968    1.000
P.neochilusfPel    0.129    0.130     1.000
P.neochilus/POA    0.113    0.113     0.979    1.000
P.amboinicus/Pel   0.110    0.111     0.800    0.812   1.000
P.barbatus/Pel     0.786    0.789     0.138    0.114   0.086
P.barbatus/POA     0.773    0.785     0.152    0.128   0.102
P.barbatus/PF      0.770    0.781     0.159    0.136   0.101
P.barbatus/RIPF    0.775    0.778     0.167    0.143   0.109
P.barbatus/Flor    0.781    0.785     0.160    0.136   0.110
                   Pg/Pel   Pg/Flor   Pn/Pel   PnPOA   Pa/Pel

P.grandis/Pel
P.grandis/Flor
P.neochilusfPel
P.neochilus/POA
P.amboinicus/Pel
P.barbatus/Pel     1.000
P.barbatus/POA     0.968    1.000
P.barbatus/PF      0.964    0.996    1.000
P.barbatus/RIPF    0.961    0.992    0.996   1.000
P.barbatus/Flor    0.976    0.976    0.973   0.977     1.000
                   Pb/Pel   Pb/POA   Pb/PF   Pb/RIPF   Pb/Flor
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Title Annotation:texto en ingles
Author:Bandeira, Juliana de Magalhaes; Bianchi, Valmor Joao; Rubin, Silvia; Peters, Jose Antonio; Braga, Eu
Publication:Acta Scientiarum Biological Sciences (UEM)
Date:Jan 1, 2010
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