Printer Friendly

Association of -308 TNF-alpha promoter polymorphism with viral load and CD4 T-helper cell apoptosis in HIV-1 infected black South Africans.

Patients infected with human immunodeficiency virus (HIV) show a decline in CD[4.sup.+] T-helper ([T.sub.H]) lymphocyte levels and an increase in viral load that ultimately results in compromised immune function and increased susceptibility to various opportunistic infections. (1) In early stages of infection, HIV-1 has the ability to manipulate the immune response to ensure its own replication and survival. (2) Consequently, there has been much controversy as to whether eliciting a robust immune response towards the virus early in infection will be beneficial or detrimental for the patient. (2)

The differential rate of HIV progression and chronic inflammatory disorders (3-5) may be induced by viral, environmental and host genetic factors. Dean et al. observed a 32 base pair deletion in the chemokine receptor 5 (CCR5) that showed better protection against HIV and slower progression to AIDS. (6) Another study investigated a chemokine receptor 2 (CCR2) polymorphism with a G[right arrow]A transition at position 190, that also resulted in slower progression to AIDS. (7) Crawley et al. found that a polymorphism associated with IL-10 at the -592 position resulted in decreased production of IL-10, inhibition of macrophage growth and decreased proliferation of HIV-1 in infected individuals. (8,9) The molecular mechanisms of most polymorphisms have not been fully elucidated. There is a need to explore more the role of host genetics in understanding HIV disease.

In vitro and in vivo studies have shown that HIV-1 infection can induce the secretion of pro-inflammatory cytokines such as tumour necrosis factor alpha (TNF-[alpha]). (10-12) TNF-[alpha] is the central mediator of the inflammatory response, and high concentrations of TNF-[alpha] may influence HIV-1 replication via clonal expansion of infected T lymphocytes. (13) In addition, TNF-[alpha] is also a potent inducer of apoptosis, which is a function dependent on the death receptor configuration of immune cells. (1,14) HIV-1 induces immune suppression by rapid apoptosis of bystander [T.sub.H] lymphocytes.

TNF-[alpha] production is tightly controlled but genotypic differences may influence transcriptional regulation. (15,16) Reports have shown that promoter polymorphisms affect TNF-[alpha] gene expression. (17-19) A common polymorphism occurs at the -308 locus in the promoter region that results in a guanine (G) to adenine (A) transition. (20) The -308 A allele has been associated with higher transcriptional activation and, therefore, increased TNF-[alpha] expression in different populations. (4,17,19) This association has also been linked to pathogenesis of various inflammatory disorders and, consequently, poorer disease prognosis. (4,17) The presence of various allelotypes, especially in promoter regions of cytokines, may severely affect immune responses to infection, given that they exert a large degree of transcriptional control over cytokine production. These effects, however, have not been comprehensively investigated in the context of infection. The precise mechanisms of genotypic influences on transcriptional regulation are currently unknown. However, it is thought that the G to A transition at the -308 locus is associated with conformational changes that increase binding affinity of transcription factors such as nuclear factor-kappa B (NF-[kappa]B). (15-17)

Considering the influence of the -308 TNF-[alpha] promoter polymorphism on TNF-[alpha] concentration, CD4[T.sub.H] lymphocyte apoptosis and HIV-1 replication, genotype may severely influence clinical outcomes in HIV-1 infected patients. The influence of the -308 TNF-[alpha] promoter polymorphism on HIV-1 infected black South Africans has not been studied. This is important as South Africa has the highest burden of HIV-1 infected individuals, and polymorphic variation may not only affect disease progression, but also response to treatment.

The aim of this study was to investigate genotypic frequencies of the -308 TNF-[alpha] promoter polymorphism in a cohort of HIV-1 infected black South African patients and determine whether genotype at this locus influenced serum TNF-[alpha] concentrations. In addition, the influence of this promoter polymorphism on CD4[T.sub.H] lymphocyte apoptosis and HIV-1 burden was investigated.

Materials and methods

Patient recruitment

This cross-sectional study was approved by the University of KwaZulu-Natal, Biomedical Research Ethics Administration (H129/04). Patients (N=75) were recruited by purposeful sampling from an antiretroviral (ARV) rollout clinic at King Edward VII Hospital, Durban, after obtaining informed consent. All patients had confirmed HIV-1 infection. Twenty-five patients were on NRTI-based HAART (NRTI: nucleoside reverse transcriptase inhibitor; HAART: highly active anti-retroviral therapy); 50 patients were HAART-naive. Healthy controls (N =76) were sourced from the South African National Blood Service. There was no follow-up of patients to assess changes in measures or outcomes over time.

Peripheral lymphocyte preparation

Buffy coats containing peripheral blood lymphocytes (PL) were extracted as previously described by our laboratory.21 Cell density was adjusted to 1x106 cells/ml with the trypan blue exclusion test.

DNA extraction

Genomic DNA was extracted from PLs for each patient. Cells were transferred to 500 (J lysis buffer containing 0.5% SDS, 150 [micro]M NaCl, 10 mM EDTA, and 10 mM Tris-HCl (pH 8.0). To this, RNase A (100 [micro]g/ml, DNase-free) was added, and the solution was incubated at 37[degrees]C for 1 hour. Following the RNase A step, proteinase K (200 ([micro]g/ml) was added to the solution and thereafter incubated for 3 hours at 50[degrees]C. Protein contaminants were then precipitated by addition of 0.1 volume 5 mM potassium acetate and centrifuging (5 000 xg, 15 minutes). Supernatants containing genomic DNA were transferred to fresh tubes and extracted with 100% isopropanol on ice and then washed with 70% ethanol. DNA samples were then dissolved in 10 mM Tris and 0.1 mM EDTA (pH 7.4) at 4[degrees]C overnight. To verify DNA extraction, equal amounts of DNA (300 ng) were electrophoresed (150 V, 50 min.) on a 1.8% agarose gel containing 0.5 mg/ml ethidium bromide. DNA bands were visualised by UV light and digitally photographed using a gel documentation system (Chemi-Doc XRS, Bio-Rad) and Quantity One Image Analysis software (Bio-Rad). The concentration of each sample was determined spectrophotometrically.


Genotyping for the-308 TNF-[alpha] promoter polymorphism

Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) was used to determine the -308 TNF-[alpha] promoter polymorphism. A 107bp PCR product was amplified using 20 pmol of forward and reverse primer in a 25 [micro]l reaction containing 0.2 mM of each dNTP, 1.5 mM Mg[Cl.sub.2], 1X Green GoTa0071 Flexi buffer (Promega), 1 U GoTaq DNA polymerase (Promega) and 100 ng genomic DNA template. The forward and reverse primers were those according to Wilson et al. (20) (5'AGGCAATAGGTTTTGAGGGCCAT 3'; 5' TCCTCCCTGCTCCGATTCCG 3').

DNA was amplified for 35 cycles with denaturation at 94[degrees]C for 3 minutes, annealing at 60[degrees]C for 1 minute, extension at 72[degrees]C for 1 minute and a final extension at 72[degrees]C for 5 minutes. The PCR product was then digested with the restriction enzyme NcoI for 12 hours at 37[degrees]C. Digestion of the PCR product confirmed 2 alleles viz. -308 G allele which resulted in 2 fragments (87 bp and 20 bp), and-308 A allele which resulted in a single 107 bp fragment (Fig. 1). (20)

TNF-[alpha] enzyme-linked immunosorbent assay (ELISA)

Plasma was collected by centrifuging whole blood. Plasma TNF-[alpha] concentration was measured using the human TNF-[alpha] Max Standard ELISA kit (Biolegend). A high affinity microtitre plate was coated with TNF-[alpha] capture antibody (100 ([micro]l/well, 18 hours at 4[degrees]C). Plates were washed and treated with 200 [micro]l assay diluent. Thereafter, 100 ([micro]l standards and samples were added. Biotinylated antihuman TNF-[alpha] detection antibody and avidin-horseradish peroxidase were then added, followed by the TMB substrate and the stop solution. Absorbance was measured at 450 nm (570 nm reference) (Bio-Tek [micro]Quant ELISA plate reader). Plasma concentrations of TNF-[alpha] were calculated by extrapolation from the standard curve.

CD4[T.sub.H] cell apoptosis, CD4[T.sub.H] cell counts and viral loads

CD4[T.sub.H] lymphocyte apoptosis, CD4[T.sub.H] cell counts and viral loads were determined as described previously. (21)

Statistical analysis

Genotype and allelic frequencies of the TNF-[alpha] -308 polymorphism for the control and HIV-1 cohort were compared by direct counting. Hardy-Weinberg statistics were used to determine whether our study cohort was representative of the larger population. Statistical analyses and correlations were done using Graphpad Prism Software (version 5).


-308 TNF-[alpha] promoter polymorphism

Genotypic distribution did not deviate from those predicted by the Hardy-Weinberg equilibrium (HIV-1: p=0.331, chi-square statistic=0.946; controls: p=0.194, chi-square statistic=1.688). There were no significant differences in genotypic distribution between the HIV-1 and control cohorts respectively (GG 60% and 65.8%; GA 37.3% and 27.6%; and AA 2.7% and 6.6%). However, when allelic distribution was investigated, we found that the -308 G allele was more frequent in the control population (79.6% v. 78.7%) but this difference did not reach statistical significance (chi square test p=0.888, odds ratio=1.06, 95% CI (confidence interval) 0.607 - 1.84; see Table 1).

Plasma TNF-[alpha] concentration

Mean plasma TNF-[alpha] concentration was determined in patients and controls by ELISA. The HIV-1 infected subjects showed significantly higher TNF-[alpha] concentration than controls (10.87 pg/ml and 3.57 pg/ml, p<0.0001, 95% CI: HIV-1 infected patients 9.39 - 12.36 pg/ ml, controls 0.74 - 6.41 pg/ml; see Table 2).

We then investigated whether genotypic variation at the -308 locus influenced plasma TNF-[alpha] concentration in the HIV-1 infected cohort. Mean TNF-[alpha] concentrations were determined after grouping patients according to genotype. Higher plasma TNF-[alpha] concentrations were recorded in the -308GA genotype than in the -308GG genotype (15.52 pg/ml v. 15.01 pg/ml). This difference did not reach statistical significance (Mann-Whitney test, p=0.404, 95% CI: GA 13.35 - 17.70 pg/ ml, GG 12.19 - 17.83 pg/ml; see Table 2). The mean TNF-[alpha] concentration in patients with the -308AA genotype was 19.35 pg/ml.

Genotype and clinical parameters

Since genotypic differences in TNF-[alpha] concentration were noted, we investigated whether genotype influenced viral load and CD4[T.sub.H] cell counts. Lower mean plasma viral load and lower mean CD4[T.sub.H] cell counts were observed in the -308GG genotype than in the-308GA genotype (3.69 log copies/[micro]l v. 3.92 log copies/ml and 256.10 cells/[micro]l v. 288.60 cells/([micro]l respectively), with no significant difference (Mann-Whitney, p=0.970, 95% CI: GG 3.00 - 4.38 log copies/ml, GA 3.25 4.58 log copies/ml and p=0.242, 95% CI: GG 204.80 - 307.40 cells/[micro]l, GA 245.30 - 331.90 cells/[micro]l; Table 2). Mean plasma viral load and CD4[T.sub.H] cell counts in patients with the -308AA genotype were 3.59 log copies/ml and 197.00 cells/[micro]l respectively.

Genotype and HAART

Following the observation of genotypic differences in the clinical markers of infection, we investigated whether genotype influenced patient response to treatment. Patients were grouped into HAART-naive and HAART-treated cohorts, and these groups further stratified according to genotype. Mean plasma viral load and CD4 [T.sub.H] cell counts were analysed according to genotype and treatment.

In the HAART-naive cohort, higher plasma viral loads and lower CD4 [T.sub.H] cell counts were observed in the -308GG genotype than in the -308GA genotype (4.92 log copies/ml v. 4.54 log copies/ml and 244.30 cells/[micro]l v. 283.80 cells/[micro]l) but there were no significant differences (Mann-Whitney test, p=0.101, 95% CI: GG 4.68 - 5.16 log copies/ml, GA 4.17-4.90 log copies/ml and p=0.250, 95% CI: GG 179.70 - 308.80 cells/[micro]l, GA 233.80 - 333.80 cells/[micro]l; see Table 4).

Higher CD4 [T.sub.H] cell counts and statistically significant lower plasma viral loads were recorded in the HAART-treated cohort than in the HAART-naive cohort (288.64 cells/ v. 264.80 cells/([micro]l and 1.19 log copies/ ml v. 4.72 log copies/[micro]l) (Mann-Whitney test, p=0.451, 95% CI: HAART-naive 226.80-302.80 cells/[micro]l, HAART-treated 216.70-360.60 cells/[micro]l and p<0.0001, 95% CI: HAART-naive 4.51-4.93 log copies/ml, HAART-treated 0.940-1.44 log copies/ml; Table 3). This result was expected as HAART is associated with lower plasma viral loads and higher CD4 [T.sub.H] cell counts. Interestingly, we noticed genotypic differences in the HAART-treated cohort in the -308GG genotype. The -308GG genotype showed higher plasma viral loads and lower CD4 [T.sub.H] cell counts than in the -308GA genotype (1.22 log copies/ml v. 1.13 log copies/ml and 278 cells/([micro]l v. 314.0 cells/([micro]l); however, the differences did not reach statistical significance (Mann-Whitney, p=0.251, 95% CI: GG 0.855 - 1.58 log copies/ml, GA 1.02 1.23 log copies/ml and p=0.374, 95% CI: GG 177.70 - 379.30 cells/[micro]l, GA 185.40 - 442.60 cells/[micro]l; see Table 4).

Genotype and apoptosis

Since genotypic differences were observed in TNF-[alpha] concentration, we investigated whether genotype influenced CD4 [T.sub.H] cell apoptosis. Significantly higher mean apoptosis levels were observed in HIV-1 infected patients than in controls (25.98% v. 8.52%; Mann-Whitney test, p<0.0001, 95% CI: control 6.71 - 10.32%, HIV-1 infected 22.35 - 29.61%; see Table 2). In the HIV-1 cohort, higher apoptosis levels were observed in the -308GG genotype (28.04%); however, there was no statistical difference between genotypes (Mann-Whitney, p=0.223, 95% CI: GG 22.87 - 33.21%, GA 17.56 27.58%; see Table 2).

We investigated mean apoptosis levels in patients on treatment, and observed higher apoptosis levels in the HAART-naive cohort than in the HAART-treated HIV-1 infected cohorts; however, the differences did not reach statistical significance (27.13% v. 23.68%, Mann-Whitney test, p=0.482, 95% CI: HAART-naive 22.14 - 32.13%, HAART treated 18.99 - 28.38%; see Table 3). The -308GG genotype showed higher apoptosis levels in both the HAART-naive and HAART treated HIV-1 infected cohorts than in the -308GA genotype (32.12% v. 29.58% and 23.77% v. 21.57%); however, differences in both cohorts were not statistically significant (Mann-Whitney test, p=0.404, 95% CI: GG 25.17 -39.07%, GA 22.79 - 36.37% and p =0.786, 95% CI: GG 18.19 - 29.35%, GA 4.82-38.32%; see Table 4). The mean apoptosis level in the patients with the -308AA genotype was 27.77%.


TNF-[alpha] is an immune regulatory cytokine that is released in response to viral antigens to combat infection. (10-12) However, chronically high concentrations of TNF-[alpha] may facilitate progression of HIV-1 and apoptosis of bystander T cells. (22)

TNF-[alpha] indirectly induces viral replication by activating NF-[kappa]B (23) which binds to the long terminal repeat (LTR) of HIV. (23,24) This may lead to production of viral proteins such as Tat and Nef which further induce TNF-[alpha] production via the inflammatory response. (23,24) The -308 TNF-[alpha] promoter polymorphism has been associated with altered TNF-[alpha] concentration. (15,16) Genotypic variation may induce conformational changes in the promoter region that increase binding affinity of transcription factors, such as NF-[kappa]B. (15,16,23)

Ours is the first report on the -308 TNF-[alpha] promoter polymorphism in HIV-1 infected black South Africans. It is probable that elevated levels of TNF-[alpha] may alter clinical outcomes in the patient.4,17 A previous study showed lower CD4 [T.sub.H] cell apoptosis and plasma viral load in a cohort of HIV-1 infected patients on HAART.21 The current study aimed to investigate whether the -308 TNF-[alpha] promoter polymorphism influenced TNF-[alpha] concentration, CD4 [T.sub.H] cell count, CD4 [T.sub.H] cell apoptosis and plasma viral load in HIV-1 infected black South Africans.

It is well established that TNF-[alpha] concentration is elevated early in infection.10,11 However, during HIV-1 infection, consistently high levels of TNF-[alpha] may be attributed to constant antigenic stimulation from viral proteins such as Tat and Nef. (23,24)

Our study shows that the -308 G allele was similar in both the HIV-1 infected and control cohorts. This finding is consistent with other studies that reported similar allelic frequencies in different demographic groups. (4,25-27) The -308 G allele in the HIV-1 infected cohort was associated with significantly high levels of TNF-[alpha], which may be due to increased binding affinity of transcription factors.

In addition to high TNF-[alpha] concentration, this study showed a cross-sectional association between allelic frequency and markers of HIV disease progression, which was indicated by high bystander [T.sub.H] cell apoptosis and viral replication. High TNF-[alpha] concentration is involved in HIV-1 replication via clonal expansion of infected [T.sub.H] cells. (13,23) It is also involved in rapid apoptosis of bystander [T.sub.H] cells, which may account for the high viral titres and high levels of apoptosis observed in this study. During HIV-1 infection, TNF-[alpha] may act as a molecular rheostat that switches between clonal expansion and bystander [T.sub.H] cell apoptosis, depending on membrane receptor profile.1,14 Genotypic differences in the TNF-[alpha] promoter that influence a cell's inherent ability to produce the cytokine may exacerbate these functions during HIV-1 infection. In response to rapid apoptosis, the immune system may compensate by increasing bone marrow turnover of mononuclear cells. These may, however, not reach complete maturation and lead to impaired [T.sub.H] cell recovery, ultimately contributing to HIV-1 progression. (1,22,28)

This study differs from previous studies which have associated the -308 A allele with high TNF-[alpha] concentration and disease. (4,17,19) The -308AA genotype has been widely associated with poorer clinical outcomes and disease progression in Leishmaniasis, cerebral malaria and insulin-dependent diabetes mellitus. (29-31) Interestingly, some reports showed no association between this genotype and disease severity. (25-27,32,33) In studies that showed the association between the -308AA genotype and disease severity, frequencies of the -308 A allele were low, which may have conferred low statistical power and, as such, these conclusions warrant confirmation in other populations. (4,34) Furthermore, the bulk of these studies were performed in populations of white ancestry. No studies to date have investigated the influence of the -308 TNF-[alpha] promoter polymorphism in infectious diseases in a black African population.


In contrast with other studies, our study reports for the first time that the -308 G allele may contribute to mechanisms that lead to poorer response to HAART therapy in Black South Africans infected with HIV-1. Similarly, we found the -308AA genotype to be least frequent (N=2), which may preclude disease association studies until adequate sample sizes are collected. Comparable clinical outcomes were observed in heterozygote individuals, providing further evidence that the presence of the -308 G allele may be associated with markers of HIV-1 progression in this study.

Single nucleotide polymorphisms that affect regulation of cytokines may affect host response to HIV-1 infection. This effect may influence disease progression and clinical outcomes. To provide holistic management of patients infected with HIV-1 and develop individual treatment strategies, it is imperative to study genotypic differences between individuals. Such approaches may curb the advent of adverse drug reactions, minimise therapeutic failures and also address not only the medical, but also the economic burdens of this disease.

Acknowledgements. The authors thank LIFElab for funding.


(1.) Badley AD, Pilon AA, Landay A, Lynch DH. Mechanisms of HIV-associated lymphocyte apoptosis. Blood 2000;96(9):2951-2964.

(2.) Furler RL, Uittenbogaart CH. Signaling through the P38 and ERK pathways: a common link between HIV replication and the immune response. Immunol Res 2010;48(1-3):99-109.

(3.) Fernandez-Real JM, Gutierrez C, Ricart W, et al. The TNF-alpha gene Nco I polymorphism influences the relationship among insulin resistance, percent body fat, and increased serum leptin levels. Diabetes 1997;46(9):1468-1472.

(4.) Rodriguez-Carreon AA, Zuniga J, HernandezPacheco G, et al. Tumor necrosis factor-alpha -308 promoter polymorphism contributes independently to HLA alleles in the severity of rheumatoid arthritis in Mexicans. J Autoimmun 2005;24(1):63-68.

(5.) Dalziel B, Gosby AK, Richman RM, Bryson JM, Caterson ID. Association of the TNF-alpha -308 G/A promoter polymorphism with insulin resistance in obesity. Obes Res 2002;10(5):401-407.

(6.) Dean M, Carrington M, Winkler C, et al. Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Science 1996;273(5283):1856-1862.

(7.) Smith MW, Dean M, Carrington M, et al. Contrasting genetic influence of CCR2 and CCR5 variants on HIV-1 infection and disease progression. Science 1997;277(5328):959-965.

(8.) Crawley E, Kay R, Sillibourne J, et al. Polymorphic haplotypes of the interleukin-10 5' flanking region determine variable interleukin-10 transcription and are associated with particular phenotypes of juvenile rheumatoid arthritis. Arthritis Rheum 1999;42(6):1101-1108.

(9.) Winkler C, Modi W, Smith MW, et al. Genetic restriction of AIDS pathogenesis by an SDF-1 chemokine gene variant. Science 1998;279(5349):389-393.

(10.) Bergamini A, Faggioli E, Bolacchi F, et al. Enhanced production of tumor necrosis factor-alpha and interleukin-6 due to prolonged response to lipopolysaccharide in human macrophages infected in vitro with human immunodeficiency virus type 1. J Infect Dis 1999;179(4):832-842.

(11.) Molina JM, Scadden DT, Byrn R, Dinarello CA, Groopman JE. Production of tumor necrosis factor alpha and interleukin 1 beta by monocytic cells infected with human immunodeficiency virus. J Clin Invest 1989;84(3):733-737.

(12.) Poli G, Kinter A, Justement JS, et al. Tumor necrosis factor alpha functions in an autocrine manner in the induction of human immunodeficiency virus expression. Proc Natl Acad Sci USA 1990;87(2):782785.

(13.) Folks TM, Clouse KA, Justement J, et al. Tumor necrosis factor alpha induces expression of human immunodeficiency virus in a chronically infected T-cell clone. Proc Natl Acad Sci USA 1989;86(7):2365-2368.

(14.) Hsu H, Shu HB, Pan MG, Goeddel DV. TRADD TRAF2 and TRADD-FADD interactions define two distinct TNF receptor 1 signal transduction pathways. Cell 1996;84(2):299-308.

(15.) Baseggio L, Bartholin L, Chantome A, et al. Allele-specific binding to the -308 single nucleotide polymorphism site in the tumour necrosis factor-alpha promoter. Eur J Immunogenet 2004;31(1):15-19.

(16.) Kroeger KM, Carville KS, Abraham LJ. The -308 tumor necrosis factor-alpha promoter polymorphism effects transcription. Mol Immunol 1997;34(5):391-399.

(17.) Abraham LJ, Kroeger KM. Impact of the -308 TNF promoter polymorphism on the transcriptional regulation of the TNF gene: relevance to disease. J Leukoc Biol 1999;66(4):562-566.

(18.) Louis E, Franchimont D, Piron A, et al. Tumour necrosis factor (TNF) gene polymorphism influences TNF-alpha production in lipopolysaccharide (LPS)stimulated whole blood cell culture in healthy humans. Clin Exp Immunol 1998;113(3):401-406.

(19.) Wilson AG, Symons JA, McDowell TL, McDevitt HO, Duff GW. Effects of a polymorphism in the human tumor necrosis factor alpha promoter on transcriptional activation. Proc Natl Acad Sci USA 1997;94(7):3195-3199.

(20.) Wilson AG, di Giovine FS, Blakemore AI, Duff GW Single base polymorphism in the human tumour necrosis factor alpha (TNF alpha) gene detectable by NcoI restriction of PCR product. Hum Mol Genet1992;1(5):353.

(21.) Karamchand L, Dawood H, Chuturgoon AA. Lymphocyte mitochondrial depolarization and apoptosis in HIV-1-infected HAART patients. J Acquir Immune Defic Syndr 2008;48(4):381-388.

(22.) Khoo SH, Pepper L, Snowden N, et al. Tumour necrosis factor c2 microsatellite allele is associated with the rate of HIV disease progression. AIDS 1997;11(4):423-428.

(23.) Duh EJ, Maury WJ, Folks TM, Fauci AS, Rabson AB. Tumor necrosis factor alpha activates human immunodeficiency virus type 1 through induction of nuclear factor binding to the NF-kappa B sites in the long terminal repeat. Proc Natl Acad Sci USA 1989;86(15):5974-5978.

(24.) Munoz-Fernandez MA, Navarro J, Garcia A, et al. Replication of human immunodeficiency virus-1 in primary human T cells is dependent on the autocrine secretion of tumor necrosis factor through the control of nuclear factor-kappa B activation. J Allergy Clin Immunol 1997;100(6 Pt 1):838-845.

(25.) Azmy IA, Balasubramanian SP, Wilson AG, et al. Role of tumour necrosis factor gene polymorphisms (-308 and -238) in breast cancer susceptibility and severity. Breast Cancer Res 2004;6(4):R395-400.

(26.) Cuenca J, Cuchacovich M, Perez C, et al. The -308 polymorphism in the tumour necrosis factor (TNF) gene promoter region and ex vivo lipopolysaccharide-induced TNF expression and cytotoxic activity in Chilean patients with rheumatoid arthritis. Rheumatology (Oxford) 2003;42(2):308-313.

(27.) Maher B, Alfirevic A, Vilar FJ, et al. TNF-alpha promoter region gene polymorphisms in HIVpositive patients with lipodystrophy. AIDS 2002;16(15):2013-2018.

(28.) Mellors JW, Munoz A, Giorgi JV, et al. Plasma viral load and CD4+ lymphocytes as prognostic markers of HIV-1 infection. Ann Intern Med 1997;126(12):946-954.

(29.) Cabrera M, Shaw MA, Sharples C, et al. Polymorphism in tumor necrosis factor genes associated with mucocutaneous leishmaniasis. J Exp Med 1995;182(5):1259-1264.

(30.) McGuire W, Hill AV, Allsopp CE, Greenwood BM, Kwiatkowski D. Variation in the TNF-alpha promoter region associated with susceptibility to cerebral malaria. Nature 1994;371(6497):508-510.

(31.) Pociot F, Briant L, Jongeneel CV, et al. Association of tumor necrosis factor (TNF) and class II major histocompatibility complex alleles with the secretion of TNF-alpha and TNF-beta by human mononuclear cells: a possible link to insulin-dependent diabetes mellitus. Eur J Immunol 1993;23(1):224-231.

(32.) Gander ML, Fischer JE, Maly FE, von Kanel R. Effect of the G-308A polymorphism of the tumor necrosis factor (TNF)-alpha gene promoter site on plasma levels of TNF-alpha and C-reactive protein in smokers: a cross-sectional study. BMC Cardiovasc Disord 2004;4:17.

(33.) Veloso S, Olona M, Garcia F, et al. Effect of TNF-alpha genetic variants and CCR5 Delta 32 on the vulnerability to HIV-1 infection and disease progression in Caucasian Spaniards. BMC Med Genet 2010;11:63.

(34.) Corbett EL, Mozzato-Chamay N, Butterworth AE, et al. Polymorphisms in the tumor necrosis factor-alpha gene promoter may predispose to severe silicosis in black South African miners. Am J Respir Crit Care Med 2002;165(5):690-693.

Shivona Gounden, MMedSci

Devapregasan Moodley, PhD

Anil A Chuturgoon, PhD

Department of Medical Biochemistry, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban

Leshern Karamchand, MMedSci

Department of Chemistry, University of Michigan, Ann Arbor, Michigan, USA

Halima Dawood, MB ChB, FCP

Department of Medicine, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban

Corresponding author: A Chuturgoon (
Table 1. Genotypic and allelic frequencies of the -308 TNF-a promoter
region polymorphism in both HIV-positive and control populations

            HIV (N=75)  p value   Controls (N=76)   p value


G/G         60%         0.331 *   65.8%             0.194 *
G/A         37.3%                 27.6%
A/A         2.7%                  6.6%


A           21.3%                 20.4%             0.888
G           78.7%                 79.6%

* Hardy-Weinberg equilibrium (HIV-1: chi-square statistic=0.946;
controls: chi-square statistic=1.688).

Table 2. Mean TNF-a concentration and markers of HIV-1 progression
in the HIV-positive and control cohorts. Markers of HIV-1 progression
within the -308 GG and -308 GA genotypes of the HIV-positive cohort

                             HIV-positive patients

TNF-a concentration (pg/ml)  10.87[ + or -]0.73

% apoptosis of CD4+ T cells  25.98[ + or -]1.82

HIV-positive patients        GG

TNF-[alpha] concentration    15.01[ + or -]1.40
(pg/ml)                      (14.04)

Plasma viral load (log       3.69[ + or -]0.337
copies/ml)                   (4.66)

CD4 (+) T cell count         256.10[ + or -]25.04
(cells/(l)                   (243.00)

% apoptosis of CD4 (+) T     28.04[ + or -]2.57
cells                        (24.52)

All values reported as mean
[ + or -]SEM (median).

                             Controls               p value

TNF-a concentration (pg/ml)  3.57[ + or -]1.36      p<0.0001

% apoptosis of CD4+ T cells  8.52[ + or -]0.90      p<0.0001

HIV-positive patients        GA

TNF-[alpha] concentration    15.52[ + or -]1.05     p=0.403
(pg/ml)                      (15.39)

Plasma viral load (log       3.92[ + or -]0.321     p=0.970
copies/ml)                   (4.36)

CD4 (+) T cell count         288.60[ + or -]20.97   p=0.242
(cells/(l)                   (275.00)

% apoptosis of CD4 (+) T     22.57[ + or -]2.45     p=0.223
cells                        (23.30)

All values reported as mean
[ + or -]SEM (median).

Table 3. Markers of HIV progression in HAART-naive and
HAART-treat-ed groups in HIV-positive patients


Plasma viral load (log        4.72[ + or -]0.105
copies/ml)                    (4.85)

CD4+ T cell count (cells/(l)  264.80[ + or -]18.80

% apoptosis of CD4+ T cells   27.13[ + or -]2.49

                              HAART-treated         p value

Plasma viral load (log        1.19[ + or -]0.115    p<0.0001
copies/ml)                    (1.06)

CD4+ T cell count (cells/(l)  288.64[ + or -]33.31  p=0.451

% apoptosis of CD4+ T cells   23.68[ + or -]2.27    p=0.482

All values reported as mean[ + or -]SEM (median).

Table 4. Markers of HIV progression in the -308 GG and -308 GA
genotypes in the HAART-naive and HAART-treated groups


HAART-naive Plasma viral load      4.92[ + or -]0.115 (4.91)
(log copies/ml)

CD4 (+) T cell count (cells/(l)    244.30[ + or -]30.72 (188.00)

% apoptosis of CD4+ T cells        32.12[ + or -]3.40 (26.49)


Plasma viral load (log copies/ml)  1.22[ + or -]0.16 (1.06)

CD4 (+) T cell count (cells/(l)    278.50[ + or -]44.57 (273.50)

% apoptosis of CD4 (+) T cells     23.77[ + or -]2.67 (22.36)


HAART-naive Plasma viral load      4.54[ + or -]0.173 (4.57)
(log copies/ml)

CD4 (+) T cell count (cells/(l)    283.80[ + or -]23.97 (273.00)

% apoptosis of CD4+ T cells        29.58[ + or -]3.34 (24.54)


Plasma viral load (log copies/ml)  1.13[ + or -]0.03 (1.15)

CD4 (+) T cell count (cells/(l)    314.00[ + or -]40.42 (314.00)

% apoptosis of CD4 (+) T cells     21.57[ + or -]5.26 (22.48)

                                   p value

HAART-naive Plasma viral load      p=0.101
(log copies/ml)

CD4 (+) T cell count (cells/(l)    p=0.250

% apoptosis of CD4+ T cells        p=0.404


Plasma viral load (log copies/ml)  p=0.251

CD4 (+) T cell count (cells/(l)    p=0.374

% apoptosis of CD4 (+) T cells     p=0.786

All values reported as mean[ + or -]SEM (median).
COPYRIGHT 2012 South African Medical Association
No portion of this article can be reproduced without the express written permission from the copyright holder.
Copyright 2012 Gale, Cengage Learning. All rights reserved.

Article Details
Printer friendly Cite/link Email Feedback
Title Annotation:ORIGINAL ARTICLE; tumor necrosis factor
Author:Gounden, Shivona; Moodley, Devapregasan; Chuturgoon, Anil A.; Dawood, Halima
Publication:Southern African Journal of HIV Medicine
Article Type:Report
Geographic Code:6SOUT
Date:Jun 1, 2012
Previous Article:Localised treatment and 6-month outcomes in patients with cytomegalovirus retinitis at a tertiary ophthalmology service in Ga-Rankuwa.
Next Article:Levels of procalcitonin, C-reactive protein and neopterin in patients with advanced HIV-1 infection.

Terms of use | Privacy policy | Copyright © 2018 Farlex, Inc. | Feedback | For webmasters