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Yellow fever outbreak, Imatong, Southern Sudan.


In May 2003, the World Health Organization received reports about a possible outbreak of a hemorrhagic Hemorrhagic
A condition resulting in massive, difficult-to-control bleeding.

Mentioned in: Hantavirus Infections


hemorrhagic

pertaining to or characterized by hemorrhage.
 disease of unknown cause in the Imatong Mountains of southern Sudan. Laboratory investigations were conducted on 28 serum samples collected from patients in the Imatong region. Serum samples from 13 patients were positive for immunoglobulin M antibody to flavivirus, and serum samples from 5 patients were positive by reverse transcription--polymerase chain reaction with both the genus Flavivirus-reactive primers and yellow lever virus--specific primers. Nucleotide sequencing of the amplicons obtained with the genus Flavivirus oligonucleotide primers confirmed yellow fever virus yellow fever virus
n.
An arbovirus of the genus Flavivirus that causes yellow fever and is transmitted by mosquitoes.
 as the etiologic agent. Isolation attempts in newborn mice and Vero cells from the samples yielded virus isolates from five patients. Rapid and accurate laboratory diagnosis enabled an interagency emergency task force to initiate a targeted vaccination campaign to control the outbreak.

**********

Yellow fever virus (YFV YFV Yellow Fever Virus ), an arthropod-borne virus in the genus Flavivirus of the family Flaviviridae, is the etiologic agent of yellow fever, a viral hemorrhagic fever Noun 1. viral hemorrhagic fever - a group of illnesses caused by a viral infection (usually restricted to a specific geographic area); fever and gastrointestinal symptoms are followed by capillary hemorrhage  that occurs in South American countries and much of sub-Saharan Africa (1,2). Flaviviruses are single-stranded, positive-sense RNA viruses with a genome organization of 5'-C, prM, M, E, NS1, NS2A, NS2B, NS3, NS4A, 2K, NS4B, and NS5-3' (3,4). YFV is transmitted by the bite of an infected female mosquito, usually Aedes species in Africa (5). YFV transmission has two epidemiologic patterns, the sylvatic sylvatic /syl·vat·ic/ (sil-vat´ik) sylvan; pertaining to, located in, or living in the woods.

sylvatic

found in the woods; occurring in animals of the forest.
 (jungle) and urban cycles. The primary transmission cycle (sylvatic) involves nonhuman primates and tree hole-breeding mosquitoes. The urban cycle is defined by human involvement; humans are exposed to infected mosquitoes, which leads to infection (5). YFV, considered one of the reemerging human infections, is an important public health problem with a case-fatality rate that can exceed 50% in symptomatic patients (6).

YFV has been successfully isolated from acute-phase serum and liver samples by injection of suckling mice and cell cultures (7), and recent infections can be confirmed serologically by demonstrating immunoglobulin (Ig) M antibody to YFV in serum samples with a specific IgM-capture enzyme-linked immunosorbent assay enzyme-linked immunosorbent assay
n.
ELISA.


Enzyme-linked immunosorbent assay (ELISA)
A diagnostic blood test used to screen patients for AIDS or other viruses.
 (MAC-ELISA) (8,9). Viral antigen can be detected in liver tissue by using immunohistochemistry techniques, and viral nucleic acid can be detected in scrum or tissue samples collected during the acute phase of illness by reverse transcription-polymerase chain reaction (RT-PCR RT-PCR

reverse transcriptase-polymerase chain reaction. See PCR1.
) (10).

A safe and effective YFV vaccine, 17D, has been available since 1937. However, as it is not used universally, probably because of cost or inefficient networks for vaccination, the disease continues to occur in Africa and South America (1). Periodic outbreaks of yellow fever in East Africa have been reported since 1940 (11). The largest outbreak, estimated at 300,000 cases, occurred from 1960 to 1962 in Ethiopia (12). In 1966, yellow fever reappeared in Arba-Minch, Ethiopia, east of Lake Abaya, in an area unaffected by the outbreak of 1960. During the 1966 outbreak, 2,200 cases with 450 deaths were reported (13). Seropositivity of 14% had been recorded in northern Kenya (14,15), yet no outbreaks of yellow lever were reported until 1992, when an epidemic emerged in northwest Kenya, with at least 54 cases and 29 deaths (16,17).

On May 5, 2003, Norwegian Church Aid reported to the World Health Organization (WHO) office for southern Sudan a suspected disease outbreak in Imatong, a mountain range located in the southern part of Eastern Equatoria, southern Sudan. The range extends northwards to the town of Toril at 3,000 in above sea level. The mountain is covered by tropical rain forest with rich flora and fauna. Though the civil war has had a negative effect on the ecosystem, the Lango people continue to live on the eastern slopes of this mountain range. The total population in Imatong is estimated to be 24,387 people (WHO southern Sudan, 2003, unpub, data). Their primary means of livelihood is agriculture, although they also keep some livestock. According to the report by WHO's Early Warning and Response Network (EWARN), which was established in southern Sudan in 1999 to monitor disease outbreaks, and the Norwegian Church Aid, the disease has clinical signs and symptoms of a viral illness and has caused the deaths of seven adults [greater than or equal to] 30 years of age. On the basis of clinical symptoms, a viral hemorrhagic fever was suspected. On May 12, 2003, a team led by WHO arrived in southern Sudan to investigate and verify the cause of the outbreak. We report on laboratory investigations performed and the identified causative agent.

Materials and Methods

Collecting Human Serum

A case definition was established as follows: an illness in a patient of any age with high lever, severe headache, neck and back pain, possibly accompanied by vomiting, abdominal pain, diarrhea, hematemesis hematemesis /he·ma·tem·e·sis/ (he?mah-tem´e-sis) the vomiting of blood.

he·ma·tem·e·sis
n.
The vomiting of blood.
, bloody diarrhea, jaundice, and epistaxis epistaxis /ep·i·stax·is/ (-stak´sis) nosebleed; hemorrhage from the nose, usually due to rupture of small vessels overlying the anterior part of the cartilaginous nasal septum.

ep·i·stax·is
n.
. A total of 28 serum samples were collected: 18 from patients with acute disease who met the working case definition, 8 from patients with possible disease with headache and joint pain (patients 010, 013,018, 020, 021, 022, 025, and 027), and 2 from convalescent con·va·les·cent
adj.
Relating to convalescence.

n.
A person who is recovering from an illness, an injury, or a surgical operation.



convalescent

1. pertaining to or characterized by convalescence.

2.
 patients (patients 020 and 028). Patient details, including their locations, are shown in the Table. Blond was collected in sterile evacuated clot activator Vacutainer tubes. Thick and thin smears were made on microscope slides for 17 patients as indicated in the Table, and the serum samples were then separated in the admission facility and stored in a liquid nitrogen dry shipper for transportation to the WHO Collaborating Center for Arbovirus arbovirus

Any of a large group of viruses that develop in arthropods (chiefly mosquitoes and ticks). The name derives from “arthropod-borne virus.” The spheroidal virus particle is encased in a fatty membrane and contains RNA; it causes no apparent harm to the
 and Viral Hemorrhagic Fever Reference and Research (CCAVH-FRR) Laboratory at the Kenya Medical Research Institute The Kenya Medical Research Institute (KEMRI) is one of East Africa's leading medical research centres. It is located in Kenya's capital, Nairobi.

Established in 1979, KEMRI has played an important role in the fight against malaria, HIV/AIDS and other diseases in Kenya, and
 (KEMRI) in Nairobi, where they were frozen at -70[degrees]C before testing.

Serologic Testing

All the serum samples were heat-inactivated at 56[degrees]C for 30 min and tested for antibodies specific to flaviviruses by MAC-ELISA (8,9). Briefly, the plates were coated overnight at 4[degrees]C with anti-human IgM capture antibody (Kirkegaard and Perry Laboratories, Gaithersburg, MD), the plates were washed, and aliquots of test sera (positive and negative controls) were added in separate wells at a dilution of 1:400. After a 1-h incubation, the plates were washed, and each serum and control sample was reacted with sucrose-acetone extracted yellow lever antigen and control antigen at optimal dilution. Positive samples were detected with a commercially available monoclonal anti-body against flaviviruses (6B6C-1) conjugated with horseradish peroxidase (Jackson Immunoresearch Laboratories, West Grove, PA) according to the manufacturer's protocol and 2,2'-azino-bis(3-ethylbenthiazoline-6-sulfonic acid) substrate (Kirkegaard and Perry Laboratories). Absorbance absorbance /ab·sor·bance/ (-sor´bans)
1. in analytical chemistry, a measure of the light that a solution does not transmit compared to a pure solution. Symbol .

2.
 was read at 405 nm. A presumptive diagnosis was made if IgM antibody in the test sample had a higher optical density than the ratio between the positive and negative control antigens.

RT-PCR

All 28 serum samples were subjected to RT-PCR by using a universal pair of primers for members of the genus Flavivirus. Viral RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
 was extracted directly from the samples by using the QIAamp viral RNA isolation kit (Qiagen, GmbH, Hilden, Germany). RT-PCR specific for amplification of a 267-bp region of NS5 gene of flaviviruses was performed with 50 pmol of oligonucleotide primers FU1 (TAC 1. TAC - Translator Assembler-Compiler. For Philco 2000.
2. TAC - Terminal Access Controller.
 AAC (Advanced Audio Coding) An audio compression technology that is part of the MPEG-2 and MPEG-4 standards. AAC, especially MPEG-4 AAC, provides greater compression and better sound quality than MP3, which also came out of the MPEG standard.  ATG ATG antithymocyte globulin.
lymphocyte immune globulin (antithymocyte globulin equine, ATG, ATG equine, LIG)

Atgam

Pharmacologic class: Immunoglobulin

Therapeutic class: Immunosuppressant
 ATG GGA GGA Generalized Gradient Approximation
GGA Good Game All
ggA Geschützte Geographische Angabe (German: Protected Geographical Indication)
GGA Global Gecko Association
GGA Georgia Geocachers Association
 AAG AAG Association of American Geographers (Washington, DC)
AAG Assistant Attorney General
AAG Asociación Argentina de Golf
AAG Anti-Aircraft Gun
AAG Assistant Adjutant General
AAG Australian Association of Gerontology
 AGA GAG AA) and CFD CFD - Computational Fluid Dynamics 2 (GTG (chat) gtg - Got to go. The user is about to stop chatting.  TCC TCC The Car Connection (web site)
TCC Tidewater Community College
TCC Tallahassee Community College
TCC Temporary Continuation of Coverage
TCC Tucson Convention Center (Tucson, AZ, USA) 
 CAG CAG 1 Chronic atrophic gastritis 2 Coronary angiography, see there  CCG CCG Chicago
CCG Collectible Card Game
CCG Canadian Coast Guard
CCG Country Commercial Guide
CCG Children's Cancer Group
CCG Commission Canadienne des Grains (Canadian Grain Commission) 
 GCG GCG Genetics Computer Group
GCG Glucagon
GCG Good Corporate Governance
GCG Global Consumer Group
GCG Global Church of God
GCG Generalized Conjugate Gradient
GCG Global Change Game
GCG Geological Curators' Group
GCG Giant-Cell Granuloma
 GTG TCA TCA

1. trichloroacetic acid.

2. tricarboxylic acid cycle (Krebs cycle).

TCA Tricyclic antidepressant, see there
 TCA GC) (18) and the Titan One Tube RT-PCR system (Roche Diagnostics GmbH, Mannheim, Germany), according to manufacturer's instructions. The RT-PCR reactions were performed on a Perkin Elmer GeneAmp 9700 Thermocycler (Applied Biosystems, Warrington, England). The following cycling conditions were used: 50[degrees]C for 30 min followed by denaturation denaturation, term used to describe the loss of native, higher-order structure of protein molecules in solution. Most globular proteins exhibit complicated three-dimensional folding described as secondary, tertiary, and quarternary structures.  at 94[degrees]C for 3 min, 40 cycles of 94[degrees]C for 30 s, annealing annealing (ənēl`ĭng), process in which glass, metals, and other materials are treated to render them less brittle and more workable.  at 55[degrees]C for 30 s, extension at 68[degrees]C for 30 s, and a final extension at 72[degrees]C for 7 min. PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
 products were resolved by using a 1.5% agarose gel. A confirmatory RT-PCR was performed to amplify a 670-bp region of the YFV prM, M,

and E genes with 50 pmol of oligonucleotide primers CAG (CTGTCC-CAATCTCAGTCC) and YF7 (AATGCTTCCTTTCC-CAAAT) (19). The following cycling conditions were used: 50[degrees]C for 30 min followed by denaturation at 94[degrees]C for 3 rein, 40 cycles of 94[degrees]C for 30 s, annealing at 50[degrees]C for 30 s, extension at 68[degrees]C for 30 s, and a final extension at 72[degrees]C for 7 min. PCR products were then resolved on a 1.5% agarose gel. All the positive samples were exposed to a second RNA extraction and RT-PCR to rule out the possibility of contamination. Positive amplicons obtained with the Flavivirus-reactive primers were purified by excising the 267-bp fragment from the agarose gel and purifying the fragments with Qiagen gel purification kit (Qiagen) for nucleotide sequence determination.

Nucleotide Sequencing

Gel-purified PCR products were quantitated, and the partial nucleotide sequences of amplicons with a minimum of 60 ng DNA/[micro]L were determined by using Big Dye terminator sequencing ready reaction kits with AmpliTaq DNA polymerase FS (Applied Biosystems, Foster City, CA). A cycle sequencing reaction was performed with each of the primers CFD2 and FU1 in a final volume of 20 [micro]L with 30 ng of PCR product, 3.5 pmol of primer, and 4 [micro]L of BigDye Terminators premix premix

a finite mixture of nutritional supplements such as minerals and vitamins, usually combined with a carrier and ready for mixing with a total ration.
, according to the manufacturer's protocol. Briefly, the tubes were heated to 96[degrees]C for 2 min, and the reaction mixture underwent 25 cycles of 30 s at 96[degrees]C, 30 s at 50[degrees]C, and 4 min at 60[degrees]C. Excess Big Dye Terminators were removed by precipitation with absolute ethanol. The partial nucleotide sequence was obtained with an Applied Biosystems 377 sequencer, according to manufacturer's instructions.

A search performed on Basic Local Alignment Search Tool (BLAST) (National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health. The NCBI is located in Bethesda, Maryland and was founded in 1988. , U.S. National Library of Medicine Noun 1. U.S. National Library of Medicine - the world's largest medical library
National Library of Medicine, United States National Library of Medicine
, Bethesda, MD) suggested that the sequence obtained was amplified from the yellow lever genome. This finding was confirmed by aligning the sequence data with data from other known flaviviruses retrieved from GenBank.

Virus Isolation

Aliquots of each of the serum samples were injected intracerebrally into litters of eight newborn (24-48 hours after birth) Swiss albino mice. The mice were observed daily for signs of illness. Sick mice were euthanized, and a preparation was made of 10% of the harvested mouse brain suspension made in Eagle's Maintenance Media with 2% serum albumin, 2% glutamine glutamine (gl`təmēn), organic compound, one of the 20 amino acids commonly found in animal proteins. , and 1% antibiotics (penicillin, streptomycin, and amphotericin B) and centrifuged at 3,000 rpm for 10 min. The clarified supernatant fluid was filtered with a 0.45-[micro]m syringe filter and injected intracerebrally into a litter of suckling mice to confirm the isolation.

All the sera were diluted 1:10 in sterile phosphate-buffered saline pH 7.4 (without magnesium and calcium), and viral isolation attempts in Vero cell cultures were made by injecting 100 [micro]L of the diluted sample onto confluent con·flu·ent
adj.
1. Flowing together; blended into one.

2. Merging or running together so as to form a mass, as sores in a rash.
 monolayer mon·o·lay·er
n.
1. A film or layer one molecule thick formed at the interface between water and either oil or air by a substance such as a partially esterified fatty acid that contains both hydrophobic and hydrophilic groups in the same
 of Vero cells in 25-[cm.sup.2] culture flasks. Flasks were incubated at 37[degrees]C and observed daily for evidence of cytopathogenic cytopathogenic /cy·to·path·o·gen·ic/ (-jen´ik) capable of producing pathologic changes in cells.

cy·to·path·o·gen·ic
adj.
Of, relating to, or producing pathological changes in cells.
 effect (CPE (Customer Premises Equipment) Communications equipment that resides on the customer's premises.

CPE - Customer Premises Equipment
). After CPE was evident, the supernatant fluid was clarified by centrifugation at 3,000 rpm for 10 min. Viral RNA was extracted from both the 10% brain suspension from sick mice and from the clarified cell culture media and screened for flavivirus and YFV viral nucleic acid RNA by RT-PCR as described previously.

Differential Diagnosis

IgM antibody tests were performed on all the samples to exclude recent exposure to Ebola virus, Marburg virus, Crimean-Congo hemorrhagic fever Crimean-Congo hemorrhagic fever

a zoonotic disease of humans, in central Asia through to eastern Europe, who are in contact with livestock. Caused by a bunyavirus, it is transmitted by ticks. The principal signs are fever, widespread hemorrhages and necrotizing hepatitis.
 virus, West Nile virus West Nile virus, microorganism and the infection resulting from it, which typically produces no symptoms or a flulike condition. The virus is a flavivirus and is related to a number of viruses that cause encephalitis. , dengue virus, chikungunya
''This article discusses the disease. See also: Chikungunya Outbreak of 2004-Present.
Chikungunya is a relatively rare form of viral fever caused by an alphavirus that is spread by mosquito bites from Aedes aegypti
 virus, Sindbis virus, and Rift Valley fever Rift Valley fever

An arthropod-borne (primarily mosquito), acute, febrile, viral disease of humans and numerous species of animals. Rift Valley fever is caused by a ribonucleic acid (RNA) virus in the genus Phlebovirus of the family Bunyaviridae.
 virus. In addition, Ebola virus was excluded by using an antigen capture ELISA ELISA (e-li´sah) Enzyme-Linked Immuno-Sorbent Assay; any enzyme immunoassay using an enzyme-labeled immunoreactant and an immunosorbent.

ELISA
n.
. PCR was performed to exclude the following pathogens: Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus, Ebola virus, Marburg virus, rickettsia rickettsia (rĭkĕt`sēə), any of a group of very small microorganisms, many disease-causing, that live in vertebrates and are transmitted by bloodsucking parasitic arthropods such as fleas, lice (see louse), and ticks. , leptospira, brucella Brucella /Bru·cel·la/ (broo-sel´ah) a genus of schizomycetes (family Brucellaceae). B. abor´tus causes infectious abortion in cattle and is the most common cause of brucellosis in humans. B. , and members of the genus Alphavirus and Bunyavirus. For 17 patients, thick blood smears were checked for Borrelia Borrelia

A genus of spirochetes that have a unique genome composed of a linear chromosome and numerous linear and circular plasmids. Borreliae are motile, helical organisms with 4–30 uneven, irregular coils, and are 5–25 micrometers long and 0.
 spp. and thin blood smear slides were checked for malarial parasites.

Results

On May 17, 2003, serologic tests and RT-PCR performed at the WHO CCAVHFRR at KEMRI identified YFV as the causative agent of the outbreak in southern Sudan. The diagnosis was supported by subsequent gene sequencing of the amplicons and isolation of the virus. The results obtained are summarized in the Table. Duplicate samples submitted to the Special Pathogens Unit at the National Institute for Communicable Diseases, South Africa, confirmed an outbreak of yellow fever.

Detecting IgM Antibody to Flaviviruses

RT-PCR and Nucleotide Sequencing

Samples from five patients were positive for flavivirus viral nucleic acid and subsequently were positive for yellow fever viral nucleic acid with primers specific for YFV. Analysis of the nucleotide sequences obtained with the flavivirus primers confirmed that the amplicons were from the NS5 region of the yellow fever genome (phylogeny has been performed separately). The serum samples that were positive by PCR were collected from patients on day 1 after onset of illness except for one sample collected on day 8 from a patient with a fatal infection.

Viral Isolation

YFV was isolated, in both suckling mice and cell cultures, from five patients from whom PCR products were obtained. Virus isolation attempts on the remaining 23 serum samples from both suckling mice and Vero cell culture were negative.

Differential Diagnosis

The sera were all negative by using various tests as described for Ebola virus, Marburg virus, Crimean-Congo hemorrhagic fever virus, West Nile virus, dengue virus, chikungunya virus, Sindbis virus, Rift Valley fever virus, rickettsia, leptospira, brucella, and members of the genus Alphavirus and Bunyavirus. The thick smears were negative for Borrelia by Giemsa staining. However, malaria parasites were demonstrated in thin smears from 7 of 17 patients tested; 6 of the patients with malaria also had evidence of YFV infection.

Discussion

Samples from 28 patients were collected from various villages in the Imatong region as follows: 10 were from Locomo village, 3 from Lofi, 4 from Tarafafa, 3 from Imatong, and 1 each from Itohom, Lofulung, Ogolok, Lotodo, Lofong, and Itede; 2 were from unknown locations. A total of 18 patients had possible YFV infections demonstrated by detection of IgM antibody, while 5 patients were confirmed as positive for YFV by RT-PCR and virus isolation. Antibody was not demonstrable in the five patients who had positive RT-PCR results; in 4 patients, the specimens were collected too early (day 1) for antibody to be detectable. In patient 001 (Table), the specimen was collected on day 8 from a patient with a fatal infection. The patient was comatose and in the late stages of infection; antibodies were not found, possibly because of a failure to produce antibodies for a variety of factors, such as nutritional status, age, and immune status. This finding demonstrates the importance of using both modalities in the diagnosis of acute YFV infection.

Plasmodium plasmodium, name for a stage in the life cycle of a slime mold. Also, Plasmodium is the name given to the genus of the protozoan parasite that causes malaria. , the causative agent of malaria, was demonstrated in six patients who were positive for YFV. This finding demonstrates that co-infection with malaria and YFV is possible. Therefore, malaria should not be assumed as the etiologic agent of a disease outbreak solely based on positive screens, without first excluding other causes.

YFV maybe be enzootic en·zo·ot·ic
adj.
Prevalent among or restricted to animals of a specific geographic area. Used of a disease.

n.
An enzootic disease.



enzootic

peculiar to or present constantly in a location. See also endemic.
 in the Imatong Mountains, yet outbreaks have not been previously recorded in this region. Political unrest and population movement of highly susceptible (unvaccinated) people within the Imatong Mountains might have been a predisposing factor for the YFV outbreak in this region. During the civil unrest, large populations of monkeys were reportedly seen. As they became more dependent on human crops for food, the monkeys came closer to human habitations. Weather factors might have also contributed to the timing of the outbreak. The months of March to May 2003 were the rainy season, and heavy rains were reported around the mountain region. The persistent downpours may have resulted in high vector populations. With no history of human yellow fever in the outbreak zone, the monkey population must be adequate to support continued circulation of the virus in the sylvatic cycle. A combination of these factors likely contributed to the timing of the outbreak.

The early detection of this outbreak was due to EWARN, a WHO-facilitated network that brings together several healthcare providers and laboratories. One of the objectives of EWARN is the early detection and response to outbreaks, such as this one. The rapid response to this outbreak of YFV and subsequent laboratory-based diagnosis clearly demonstrate that an efficient surveillance system can lead to quickly detecting outbreaks and appropriate intervention, potentially saving many lives. At the time of this writing, 80% of the population at risk in Imatong had been vaccinated, with the campaign extending to Torit County and neighboring counties. Vaccination in Torit County had covered 51% of the population at risk (98,705).
Table. History, location and results obtained from patients during
yellow fever outbreak, Imatong, southern Sudan, May 2003 (a)

                                            Days after
Case no    Village      Sex      Age (y)      onset

001 (d)      Lofi       Male       48            8
002 (e)     Locomo      Male       60            4
003 (e)    Tarafafa    Female    unknown         1
004 (e)     Itohom     Female      12        Unknown
005 (e)    Tarafafa    Female      16            6
006 (e)     Locomo     Female       7            1
007 (e)    unknown      Male     unknown     Unknown
008 (e)      Lofi      Female      40            1
009 (d)    Imatong     Female      35        Unknown
010 (e)     Locomo     Female      15        Unknown
011 (e)     Locomo      Male       45        Unknown
012 (e)    Lofulang     Male       25            7
013 (e)     Locomo     Female       8            1
014 (e)     Locomo      Male       60        Unknown
015 (e)     Ogolok      Male       42        Unknown
016 (e)     Locomo      Male       55            7
017 (e)    Tarafafa    Female       9            3
018 (e)     Lotodo     Female       3        Unknown
019 (d)    Imatong      Male       14        Unknown
020 (d)    Imatong     Female      30           20
021 (f)      Lofi      Female      10        Unknown
022 (f)     Locomo      Male       25        Unknown
023 (f)    Tarafafa     Male       60        Unknown
024 (e)    unknown      Male       23        Unknown
025 (f)     Locomo     Female      40        Unknown
026 (e)     Lofong     Female      16        Unknown
027 (e)     Locomo     Female       4        Unknown
028 (f)     Itede      Female      23           21

                             RT-PCR    Virus isolation    Blood smear
Case no    Flavivirus IgM     (b)        mice/cells         MPS (c)

001 (d)          -             +             +/+              nd
002 (e)          -             -          nd (e)/-            -
003 (e)          -             +             +/+              +
004 (e)          +             -            nd/-              ++
005 (e)          +             -            nd/-              +
006 (e)          -             +             +/+              nd
007 (e)          +             -            nd/-              +
008 (e)          -             +             +/+              -
009 (d)          -             -            nd/-              nd
010 (e)          +             -            nd/-              +
011 (e)          +             -            nd/-              +
012 (e)          +             -            nd/-              nd
013 (e)          -             +             +/+              nd
014 (e)          +             -            nd/-              -
015 (e)          -             -            nd/-              -
016 (e)          +             -            nd/-              -
017 (e)          -             -            nd/-              -
018 (e)          -             -            nd/-              -
019 (d)          -             -            nd/-              nd
020 (d)          -             -            nd/-              +
021 (f)          +             -            nd/-              -
022 (f)          +             -            nd/-              nd
023 (f)          +             -            nd/-              nd
024 (e)          -             -            nd/-              -
025 (f)          +             -            nd/-              nd
026 (e)          -             -            nd/-              -
027 (e)          +             -            nd/-              nd
028 (f)          -             -            nd/-              nd

(a) Ig, immunoglobin; RT-PCR, reverse transcriptase-polymase chain
reaction; MPS, mucopolysaccgariodisis; nd, not done.

(b) Specimens were tested using primers reactive with genus Flavivirus
and with a second of primers specific to yellow fever virus. Nucleotide
sequences were also determined.

(c) Malaria parasite smear.

(d) Fatal case.

(e) No outcome for cases due to inaccessibility.

(f) Recovered.


Acknowledgments

We thank Ernest K. Mabinda and John Gachoya and our colleagues at the Kenya Medical Research Institute (KEMRI); the Centers for Disease Control and Prevention Centers for Disease Control and Prevention (CDC), agency of the U.S. Public Health Service since 1973, with headquarters in Atlanta; it was established in 1946 as the Communicable Disease Center.  (CDC See Control Data, century date change and Back Orifice.

CDC - Control Data Corporation
) for their continued support of the World Health Organization Collaborating Center for Arbovirus and Viral Hemorrhagic Fever Reference and Research Laboratory in Kenya; Delia Wasawo and employees of the International Livestock Research Institute (ILRI ILRI International Livestock Research Institute (Ethiopia)
ILRI International Institute for Land Reclamation and Improvement
) for their prompt sequence data; Michael Sardelis and Trish Coldren; Lee Dunster for his continuous support and advice; and the Inter-Agency Emergency Task Force led by the World Health Organization, United Nations Children's Fund United Nations Children's Fund (UNICEF), an affiliated agency of the United Nations. It was established in 1946 as the United Nations International Children's Emergency Fund. , Operation Lifeline Sudan's Emergency Preparedness and Response Coordination Unit, and Norwegian Church Aid, and other agencies and participants who coordinated the outbreak response.

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pro·tein·ase
n.
A protease that begins the hydrolytic breakdown of proteins usually by splitting them into polypeptide chains.
 is a prerequisite for processing at downstream 4A/4B signalase site. J Virol. 1993;67:2327-35.

(5.) Monath TP. Yellow fever. In: Monath TP, editor. The arboviruses arboviruses (ar´bōvī´rsz),
n.
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(6.) Tomori O. Impact of yellow fever on the developing world. Adv Virus Res. 1999;53:534.

(7.) Ajello CA. Evaluation of Aedes albopictus tissue cell culture for use in association with arbovirus isolation. J Med Virol. 1979;3:301-6.

(8.) Monath TP, Nystrom RR, Bailey RE, Calisher CH, Muth DJ. Immunoglobulin M antibody capture enzyme-linked immunosorbent assay for diagnostics of St. Louis encephalitis St. Louis encephalitis

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(10.) Abram SB, editor. Control of communicable diseases manual The Control of Communicable Diseases Manual is one of the most widespread single-volume reference volumes on the topic of infectious diseases. It is useful for physicians, global travelers, emergency volunteers and all who have dealt with or might have to deal with public health . 16th ed. American Public Health Association The American Public Health Association (APHA) is Washington, D.C.-based professional organization for public health professionals in the United States. Founded in 1872 by Dr. Stephen Smith, APHA has more than 30,000 members worldwide. ; 1995. p. 519-24.

(11.) Sanders EJ, Tukei PM. Yellow fever: an emerging threat for Kenya and other East African countries. East Afr Med J. 1996;73:10-2.

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(13.) Ardoin P, Rodhain F, Hannoun C. Epidemiologic study of arboviruses in the Arba-Minch district of Ethiopia. Trop Geogr Med. 1976;28:309-15.

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(15.) Henderson BE, Metselaar D, Kirya GB, Timms GL. Investigations into yellow fever virus and other arboviruses in the northern regions of Kenya. Bull World Health Organ. 1970;42:787-95.

(16.) World Health Organization. Yellow fever, Kenya. Wkly Epidemiol Rec. 1993;22:159-60.

(17.) Sanders JE, Borus P, Ademba G, Kuria G, Tukei PM, LeDuc JW. Sentinel surveillance for yellow fever in Kenya, 1993 to 1995. Emerg Infect Dis. 1996;2:236-8.

(18.) Kuno G, Chang G-JJ, Tsuchiya KR, Karabatsos N, Cropp CB. Phylogeny of genus Flavivirus. J Virol. 1998;72:73-83.

(19.) Wang E, Weaver SC, Shope RE, Tesh RB, Watts DM, Barrett ADT. Genetic variation in yellow fever virus: Duplication in 3' non-coding region of strains from Africa. Virology. 1996;225:274-81.

Clayton O. Onyango, * Victor O. Ofula, * Rosemary C. Sang, * Samson L. Konongoi, * Abdourahmane Sow, ([dagger]) Kevin M. De Cock, ([double dagger]) Peter M. Tukei, ([section]) Fredrick A. Okoth, ([section]) Robert Swanepoel, ([paragraph]) Felicity J. Burt, ([paragraph]) Norman C. Waters, # and Rodney L. Coldren #

* World Health Organization (WHO) Collaborating Center for Arbovirus and Viral Hemorrhagic Fever Reference and Research, Nairobi, Kenya; ([dagger]) WHO South Sudan, Warwick Center, Nairobi, Kenya; ([double dagger]) Centers for Disease Control and Prevention, Atlanta, Georgia, USA; ([section]) Kenya Medical Research Institute, Nairobi, Kenya; ([paragraph]) National Institute for Communicable Diseases, Johannesburg, Republic of South Africa; and # U.S. Army Medical Research Unit-Kenya, Nairobi, Kenya

Mr. Onyango is a researcher at the World Health Organization Collaborating Center for Arboviruses and Viral Hemorrhagic Fever Reference and Research Laboratory, based at the Kenya Medical Research Institute. He heads the Molecular Virology section.

Address for correspondence: Clayton O. Onyango, WHO Collaborating Center for Arbovirus and Viral Hemorrhagic Fever Reference and Research, Kenya Medical Research Institute, P.O. Box 54628, Nairobi, Kenya; fax: +254-20-2714745; email: conyango@nairobi.mimcom.net
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Title Annotation:Research
Author:Coldren, Rodney L.
Publication:Emerging Infectious Diseases
Date:Jun 1, 2004
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