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Unnatural biochemistry: bacteria make and use an alien amino acid.


Almost all organisms assemble proteins from the same 20 natural building blocks, known as amino acids. But now, in a feat of genetic engineering, researchers have for the first time constructed an organism that synthesizes and incorporates a 21st amino acid into its proteins.

The modified version of the common bacterium Escherichia coli Escherichia coli (ĕsh'ərĭk`ēə kō`lī), common bacterium that normally inhabits the intestinal tracts of humans and animals, but can cause infection in other parts of the body, especially the urinary tract.  could be valuable to scientists investigating why life operates with 20 amino acids, rather than, say, 19 or 21, remarks Ryan Mehl, a member of the team that created the bacterium at the Scripps Research Institute in La Jolla, Calif.

The work could also lead to biotech organisms that manufacture new materials from nonstandard non·stan·dard  
adj.
1. Varying from or not adhering to the standard: nonstandard lengths of board.

2.
 amino acids. Instead of chemical plants, "we could have bacteria generating our polymers," says Mehl, who last September moved from Scripps to Franklin & Marshall College in Lancaster, Pa. He and his coworkers describe their organism in the Jan. 29 Journal of the American Chemical Society
For the Joint Academic Classification of Subjects system, see Joint Academic Classification of Subjects.

The Journal of the American Chemical Society (usually abbreviated as J. Am. Chem. Soc.
.

Hung-wen (Ben) Liu of the University of Texas at Austin “University of Texas” redirects here. For other system schools, see University of Texas System.
The University of Texas at Austin (often referred to as The University of Texas, UT Austin, UT, or Texas
 rates the work as "beautiful." The research solves a technically challenging problem and potentially has many practical uses, he adds.

Researchers previously had coerced bacteria to take up extra amino acids from laboratory dishes and use them to make proteins (SN: 6/3/00, p. 360). But until now, no one had altered a bacterium so that it could synthesize a 21st amino acid and then incorporate it into proteins along with the standard amino acids This list of standard proteinogenic amino acids details the chemical structures and properties of the twenty standard amino acids used in proteins by living cells. Structures .

The Scripps team, led by Peter Schultz, gave E. coli E. coli: see Escherichia coli.
E. coli
 in full Escherichia coli

Species of bacterium that inhabits the stomach and intestines. E. coli can be transmitted by water, milk, food, or flies and other insects.
 genetic instructions for making a nonstandard amino acid--one produced by another bacterium as part of a defensive chemical but not naturally integrated into proteins. All the modified E. coli requires to construct the new amino acid is salt, water, and a carbon source, such as glucose.

The scientists also genetically modified the organism's biochemical machinery so it would integrate the alien amino acid into proteins. To avoid inflicting any harm on the bacterium, the researchers made it use the extra amino acid in the construction of the oxygen-carrying protein called myoglobin--a protein not naturally found in E. coli.

The work "achieves something that most of us have dreamed of," says Jack Kirsch kirsch  
n.
A colorless brandy made from the fermented juice of cherries.



[French, short for German Kirschwasser; see kirschwasser.
 of the University of California, Berkeley The University of California, Berkeley is a public research university located in Berkeley, California, United States. Commonly referred to as UC Berkeley, Berkeley and Cal . "It's sensational."

The Scripps scientists have begun testing whether E. coli that make 21 amino acids fare better than their conventional cousins under stressful conditions, such as extreme temperatures and poor nutrition, says Mehl.
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Article Details
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Author:Gorman, J.
Publication:Science News
Date:Jan 25, 2003
Words:400
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