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UCI Researchers Compare Gel Analysis to eGene High-Speed HDA-GT12(TM) System Analysis in Attempting to Find High-Throughput and Cost-Effective Strategy for ApoE Genotyping in Alzheimer's Disease.


IRVINE, Calif. -- eGene Inc. (OTCBB OTCBB

See OTC Bulletin Board (OTCBB).
:EGEI), developers of a revolutionary high-performance genetic analysis technology, today announced that its HDA-GT12(TM) Genetic Analyzer has been used by researchers at the Center for Molecular and Mitochondrial mitochondrial

pertaining to mitochondria.


mitochondrial RNAs
a unique set of tRNAs, mRNAs, rRNAs, transcribed from mitochondrial DNA by a mitochondrial-specific RNA polymerase, that account for about 4% of the total cell RNA that
 Medicine and Genetics at the University of California The University of California has a combined student body of more than 191,000 students, over 1,340,000 living alumni, and a combined systemwide and campus endowment of just over $7.3 billion (8th largest in the United States). , Irvine, to find a high-throughput and cost-effective strategy for ApoE genotyping of Alzheimer's Disease Alzheimer's disease (ăls`hī'mərz, ôls–), degenerative disease of nerve cells in the cerebral cortex that leads to atrophy of the brain and senile dementia. .

Researchers Vincent Procaccio, M.D., Ph.D., Antonio Davila and Richard Jimenez of the Center for Molecular and Mitochondrial Medicine and Genetics at UCI UCI University of California, Irvine
UCI Union Cycliste Internationale (International Cycling Union)
UCI Unidad de Cuidados Intensivos
UCI United Cinemas International (UK) 
, under the direction of Douglas Wallace, compared traditional slab gel electrophoresis to automated capillary electrophoresis (the HDA-GT12 eGene Analyzer) in performing their analysis. They concluded that the automated procedure using eGene's Analyzer can reduce hours of work to five minutes, while increasing the number of samples that can be run concurrently and decreasing the cost per test. In addition, all of the information can be stored on the automated system for comparison and further analysis.

"As our population ages, genetic analysis will take a bigger role in the diagnosis of Alzheimer's Disease," stated Ming S. Liu, acting CEO (1) (Chief Executive Officer) The highest individual in command of an organization. Typically the president of the company, the CEO reports to the Chairman of the Board.  of eGene. "This study, carried out at MAMMAG, demonstrated that our Analyzer can effectively improve the workflow and increase the productivity of medium- to high-throughput laboratories."

The HDA-GT12(TM) Genetic Analyzer is designed to improve the workflow and increase the productivity of medium- to high-throughput laboratories. A patented multiplex fluorescence detection design with solid-state light sources and micro-optical collectors makes the system compact and affordable. The system analyzes microsatellites, AFLP and RFLP RFLP
abbr.
restriction fragment length polymorphism



RFLP

restriction fragment length polymorphism.

RFLP 
. It performs RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
 and oligonucleotide quality checks, as well as fast DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 sample screening, high-resolution DNA fragment analysis (2-5bp) and large DNA fragments analysis (up to 10Kb). In addition, the system analyzes the quality and quantity of total RNA and cRNA, determines the efficiency of cRNA and cDNA amplification reactions and ensures quality of fragmented cRNA.

In performing gel analysis, the researchers used 10 percent polyacrylamide gel and loaded 20 microliters of digested PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
 products mixed with dye into each well. They electrophoresed for one and one-half hours, stained the gel with ethidium bromide for 10 minutes and viewed and photographed the Hhal fragments with an ultraviolet light source for the gel image photo.

Using eGene's system, the researchers used only one microliter microliter /mi·cro·li·ter/ (µL) (mi´kro-le?ter) one millionth (10-6) of a liter.

mi·cro·li·ter
n.
A unit of volume equal to one-millionth (10-6) of a liter.
 diluted Hhal digested PCR samples and diluted (1:10) in TE solution, loaded 12-strip tubes in the eGene HDA-GT12 System and ran the OM 500 method with 15bp and 3kb markers. Run time was less than five minutes. Finally, they analyzed chromatograms on the BioCalculator(TM) software provided by eGene. This software controls the operation of the instrument and data analysis, giving researchers the flexibility to choose electropherogram and/or gel-view formats. The researchers determined that eGene's system could provide the appropriate needed data in a significantly less time and for less money than conventional analysis.

Alzheimer's Disease, characterized by progressive loss of memory and cognitive function, is the most common form of neurodegenerative disease. Excessive accumulation of B-Amyloid peptides (AB) and neurofibrillary tangles are pathological hallmarks of Alzheimer's Disease.

Apolipoprotein E (ApoE), a protein that functions in the central nervous system and peripheral nervous system peripheral nervous system: see nervous system.  to help repair damaged cell walls following injury, facilitates the transport of lipids to provide injured neurons with cholesterol and phospholipids.

Three different types of ApoE (2, 3 and 4) have been described and ApoE-e4 has been linked to increased risk for the development of Alzheimer's in 40 to 60 percent of patients. Researchers believe that by identifying the genetic markers, they can help to provide a better understanding of risk factors for Alzheimer's Disease.

About eGene Inc.

eGene Inc. focuses its core technologies of capillary electrophoresis, microfluidics, liquid handling and automation to develop and manufacture low-cost, microfluidic, miniaturized digital genetic analyzer systems, software and consumables for biological materials testing applications. These products detect, quantify, identify and characterize DNA and RNA at high rates of specificity and sensitive while automating routine and non-routine laboratory and industrial procedures critical to product safety, development quality and productivity.
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Date:Mar 16, 2006
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