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To pack a strand tight, make it a helix.


Physicists in Italy and the United States have demonstrated that the best strategy for packing a string into the least space is to coil it into a helix. What's more, the helices that fill space most efficiently in the team's computer simulations closely resemble those that form naturally in proteins, report Amos Maritan of the International School for Advanced Studies The International School for Advanced Studies (Italian: Scuola Internazionale Superiore di Studi Avanzati, SISSA) instituted on 1978, is a post-graduate teaching and research institute with a special statute.  (SISSA SISSA Scuola Internazionale Superiore di Studi Avanzati (Italy; International School for Advanced Studies) ) in Trieste, Italy, and his colleagues. Their study appears in the July 20 NATURE.

Reasoning based on chemistry and thermodynamics predicts that proteins will form helices. But the newfound, space-saving advantage of these geometries "might be one reason underlying the particular selection of the helices found in nature," says Jayanth R. Banavar of Pennsylvania State University Pennsylvania State University, main campus at University Park, State College; land-grant and state supported; coeducational; chartered 1855, opened 1859 as Farmers' High School.  in University Park, a member of the research team.

Maritan, Banavar, and SISSA colleagues Cristian Micheletti and Antonio Trovato simulated molecular strands as beads connected by short tubes. The scientists' computers then confined the faux molecules within the boundaries of a small cube or within more abstract, mathematically defined constraints.

Because a fatter thread might fill a space more thoroughly than a skinny one, the string-packing algorithm inflated each tube as much as possible within the imposed limits. The computer program then made the plumped-up strands slither, wiggle, and gyrate gy·rate
v.
1. To revolve around a fixed point or axis.

2. To revolve in or as if in a circle or spiral.

adj.
In rings; coiled or convoluted.
 into myriad configurations, tallying how efficiently each arrangement filled the allowed space. A comparison showed that the optimally packed computer-generated helices closely matched the specific twists and diameters of helices in proteins.

Might this packing advantage have anything to do with the shape of DNA's double helix? Data from another study indicates it does, argue Andrzej Stasiak of the University of Lausanne The University of Lausanne (in French: Université de Lausanne) or UNIL in Lausanne, Switzerland was founded in 1537 as a school of theology, before being made a university in 1890. Today about 10,000 students and 2200 researchers study and work at the university.  in Switzerland and John H. Maddocks of the Swiss Federal Institute of Technology The Swiss Federal Institute of Technology may refer to one of two institutes of higher education in Switzerland:
  • ETH Zurich in Zurich
  • École Polytechnique Fédérale de Lausanne in Lausanne
 Lausanne in a commentary in the same journal.
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Article Details
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Author:P.W.
Publication:Science News
Article Type:Brief Article
Date:Aug 19, 2000
Words:290
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