The need to decide if all estrogens are intrinsically similar.We used gene expression profiling Microarray technology is often used for gene expression profiling. It makes use of the sequence resources created by the genome sequencing projects and other sequencing efforts to answer the question, m investigate whether the molecular effects induced by estrogens Estrogens Hormones produced by the ovaries, the female sex glands. Mentioned in: Acne, Polycystic Ovary Syndrome estrogens (es´trōjenz), n. of different provenance prov·e·nance n. 1. Place of origin; derivation. 2. Proof of authenticity or of past ownership. Used of art works and antiques. are intrinsically similar. In this article we show that the physiologic estrogen 17[beta]-estradiol, the phytoestrogen phytoestrogen /phy·to·es·tro·gen/ (-es´tro-jen) any of a group of weakly estrogenic, nonsteroidal compounds widely occurring in plants. phy·to·es·tro·gen n. genistein, and the synthetic estrogen diethylstilbestrol diethylstilbestrol: see DES. alter the expression of the same 179 genes in the intact immature mouse uterus under conditions where each chemical has produced an equivalent gravimetric gravimetric /grav·i·met·ric/ (grav?i-me´trik) pertaining to measurement by weight; performed by weight, as a gravimetric method of drug assay. grav·i·met·ric adj. 1. and histologic his·tol·o·gy n. pl. his·tol·o·gies 1. The anatomical study of the microscopic structure of animal and plant tissues. 2. The microscopic structure of tissue. uterotrophic effect, using the standard 3-day assay protocol. Data are also presented indicating the limitations associated with comparison of gene expression profiles for different chemicals at times before the uterotrophic effects are fully realized. We conclude that the case has yet to be made for regarding synthetic estrogens as presenting a unique human hazard compared with phytoestrogens Phytoestrogens Compounds found in plants that can mimic the effects of estrogen in the body. Mentioned in: Premenstrual Syndrome phytoestrogens, n.pl plant-derived estrogen analogs. and physiologic estrogens. Key words: diethylstilbestrol, estrogen, gene expression, genistein, microarray, phytoestrogen, toxicogenomics, uterus. Environ Health Perspect 112:1137-1142 (2004). doi:10.1289/ehp.7028 available via http://dx.doi.org/[Online 19 May 2004] ********** The question of whether phytoestrogens and synthetic estrogens are toxicologically similar, or intrinsically different, presents a challenge to all involved in human hazard and risk assessments. Although there is a general concern that exposure to nanogram nanogram /nano·gram/ (ng) (nan?o-gram) one billionth (10-9) of a gram. nan·o·gram n. Abbr. ng One billionth (10-9) of a gram. or microgram microgram /mi·cro·gram/ (µg) (mi´kro-gram) one millionth (10-6) of a gram. mi·cro·gram n. Abbr. amounts of environmental estrogens may be associated with adverse health effects, in the public mind there is a widespread belief that foods and dietary supplements Noun 1. dietary supplement - something added to complete a diet or to make up for a dietary deficiency diet - a prescribed selection of foods vitamin pill - a pill containing one or more vitamins; taken as a dietary supplement containing milligram milligram /mil·li·gram/ (mg) (mil´i-gram) one thousandth (10-3) of a gram. mil·li·gram n. Abbr. mg A metric unit of mass equal to one thousandth (10-3) of a gram. quantities of phytoestrogens confer only health benefits. An implicit distinction therefore seems to have been drawn between synthetic and plant-derived estrogens--a belief sustained in the public mind by the assumption that natural is good and synthetic is bad--but an untested and potentially misleading notion for those involved with science-based human hazard/risk assessments. Phytoestrogens and synthetic estrogens are generally considered separately in the literature. For example, Howdeshell et al. (1999) suggested a possible association between the advance in first estrus estrus Period in the sexual cycle of female mammals, except the higher primates, during which they are in heat (ready to accept a male for mating). Some animals (e.g., dogs) have only one heat during a breeding season; others (e.g. observed in mice exposed in utero in utero (in u´ter-o) [L.] within the uterus. in u·ter·o adj. In the uterus. in utero adv. to 2.4 [micro]g/kg of the synthetic environmental estrogen bisphenol A Bisphenol A is a chemical compound containing two phenol functional groups. It belongs to the phenol class of aromatic organic compounds. It is widely prepared and sold and various important polymers/plastics are made from it. and reports of an increased incidence of hypospadias hypospadias /hy·po·spa·di·as/ (-spa´de-is) a developmental anomaly in which the urethra opens inferior to its normal location; usually seen in males, with the opening on the underside of the penis or on the perineum. in boys (Paulozzi et al. 1997) and the earlier sexual maturation of girls (Herman-Giddens et al. 1997)--the implication being that synthetic estrogens present a greater hazard than the much higher levels of phytoestrogens being consumed by those same children. In contrast, there are reports of an increased incidence of hypospadias in boys born to vegetarians (North and Golding 2000), of alterations in the menstrual cycle menstrual cycle n. The recurring cycle of physiological changes in the uterus, ovaries, and other sexual structures that occur from the beginning of one menstrual period through the beginning of the next. (Cassidy et al. 1994), and of reduced breast cancer incidences (Messina 1999) among women eating diets rich in phytoestrogens. Support for these epidemiologic observations comes from experimental studies indicating that advances in sexual development in rodents can be induced by their exposure to phytoestrogens (Casanova et al. 1999; Cassidy and Fanghnan 2000; Safe et al. 2002). In contrast to these separate lines of inquiry, Newbold and colleagues have evaluated potential similarities between natural and synthetic estrogens. In seminal studies, they demonstrated that neonatal exposure of female mice to equipotent Adj. 1. equipotent - having equal strength or efficacy potent, stiff, strong - having a strong physiological or chemical effect; "a potent toxin"; "potent liquor"; "a potent cup of tea", "a stiff drink" uterotrophic doses of the phytoestrogen genistein (GEN; Figure 1) or the synthetic estrogen diethylstilbestrol (DES) leads to an identical incidence of uterine uterine /uter·ine/ (u´ter-in) pertaining to the uterus. u·ter·ine adj. Of, relating to, or in the region of the uterus. adenomas at 18 months of age (Newbold et al. 2001). However, in attempting to draw parallels, or distinctions, between phytoestrogens and synthetic estrogens, it is imperative to consider growing awareness of the complexity of estrogen signaling pathway and the pleuripotential biologic activities of most organic chemicals--irrespective of their origin. [FIGURE 1 OMITTED] Estrogen signaling in mammalian cells is primarily mediated at the molecular level by two members of the nuclear receptor In the field of molecular biology, nuclear receptors are a class of proteins found within the interior of cells that are responsible for sensing the presence of hormones and certain other molecules. superfamily--estrogen receptors alpha (ER-[alpha]) and beta (ER-[beta]). Ligand-activated ER-[alpha] and ER-[beta] function as transcription factors Please [improve the article] or discuss this issue on the talk page. , in conjunction with numerous coregulatory proteins, in order to activate or repress re·press v. 1. To hold back by an act of volition. 2. To exclude something from the conscious mind. the transcription of ER-responsive genes (Hall et al. 2001; Moggs and Orphanides 2001). There is considerable variation in the binding affinity of ER-[alpha] and ER-[beta] among different estrogens (Kuiper et al. 1998). In the case of the chemicals studied here, the physiologic estrogen 17[beta]-estradiol ([E.sub.2]) and DES bind with a similar affinity to ER-[alpha] and ER-[beta], whereas GEN binds with approximately 20-fold higher affinity to ER-[beta] than to ER-[alpha] (Kuiper et al. 1998). Concerning nonhormonal properties of the test chemicals (most of which have only be defined in vitro in vitro /in vi·tro/ (in ve´tro) [L.] within a glass; observable in a test tube; in an artificial environment. in vi·tro adj. In an artificial environment outside a living organism. ), GEN inhibits a range of enzymes, including tyrosine kinases tyrosine kinase An enzyme intimately linked to signal transduction–ST, either as a receptor-type TK, which participates in transmembrane signaling, or as an intracellular TK, participating in ST to the nucleus; ↑ or ↓ TK activity is associated with (Akiyama et al. 1987), nitric oxide synthase The nitric oxide synthase (NOS; EC 1.14.13.39) is an enzyme in the body that contributes to transmission from one neuron to another, to the immune system and to dilating blood vessels. (Duarte et al. 1997), and topoisomerase topoisomerase an enzyme involved in DNA replication that introduces a single-strand nick in the DNA enabling it to swivel and thereby relieve the accumulated winding strain generated during unwinding of the double helix. II (Okura et al. 1988), and also decreases calcium-channel activity (Potier and Rovira 1999), lipid peroxidation Lipid peroxidation refers to the oxidative degradation of lipids. It is the process whereby free radicals "steal" electrons from the lipids in cell membranes, resulting in cell damage. This process proceeds by a free radical chain reaction mechanism. (Arora et al. 1998), and diacylglycerol synthesis (Dean et al. 1989). Likewise, DES is reported to induce aneuploidy aneuploidy /an·eu·ploi·dy/ (an?u-ploi´de) any deviation from an exact multiple of the haploid number of chromosomes, whether fewer or more. an·eu·ploi·dy n. in mammalian cells (Aardema et al. 1998) and to bind to to contract; as, to bind one's self to a wife s>. See also: Bind rat liver DNA DNA: see nucleic acid. DNA or deoxyribonucleic acid One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes. (Williams et al. 1993). More recently, some phytoestrogens were reported to inhibit the aromatase-mediated conversion of testosterone testosterone (tĕstŏs`tərōn), principal androgen, or male sex hormone. One of the group of compounds known as anabolic steroids, testosterone is secreted by the testes (see testis) but is also synthesized in small quantities in the to [E.sub.2] in vitro (Almstrup et al. 2002), and equol, the major circulating estrogenic metabolite metabolite, organic compound that is a starting material in, an intermediate in, or an end product of metabolism. Starting materials are substances, usually small and of simple structure, absorbed by the organism as food. associated with the dietary ingestion ingestion /in·ges·tion/ (-chun) the taking of food, drugs, etc., into the body by mouth. in·ges·tion n. 1. The act of taking food and drink into the body by the mouth. 2. of phytoestrogens, is reported to selectively sequester sequester v. to keep separate or apart. In so-called "high-profile" criminal prosecutions (involving major crimes, events, or persons given wide publicity) the jury is sometimes "sequestered" in a hotel without access to news media, the general public or their dihydrotestosterone dihydrotestosterone /di·hy·dro·tes·tos·te·rone/ (DHT) (-tes-tos´te-ron) an androgenic hormone formed in peripheral tissue by the action of 5 on testosterone; thought to be the androgen responsible for development of male primary sex and thereby to act as a functional antiandrogen antiandrogen /an·ti·an·dro·gen/ (-an´dro-jen) any substance capable of inhibiting the biological effects of androgens. an·ti·an·dro·gen n. in vivo in vivo /in vi·vo/ (ve´vo) [L.] within the living body. in vi·vo adj. Within a living organism. in vivo adv. (Lund et al. 2004). In order to advance understanding in this area, we decided to compare the genes expressed in the immature mouse uterus when it had grown in response to treatment with the estrogens [E.sub.2], DES, and GEN. The immature mouse uterus was selected for our analysis because it is a major estrogen-responsive organ and forms the basis for a reference assay of estrogenic activity (Owens and Ashby 2002), including carcinogenesis car·ci·no·gen·e·sis n. The production of cancer. carcinogenesis production of cancer. biological carcinogenesis viruses and some parasites are capable of initiating neoplasia. (Newbold et al. 2001). Furthermore, it expresses both ER-[alpha] and ER-[beta] (Weihua et al. 2000) and the androgen receptor The androgen receptor (AR) is a type of nuclear receptor which is activated by binding of either of the androgenic hormones testosterone or dihydrotestosterone.[1] (Frasor et al. 2003). We initially conducted a global analysis of gene expression in the mouse uterus at 1, 2, 4, 8, 24, 48, and 72 hr after exposure to a single high dose of either GEN (250 mg/kg) or [E.sub.2] (400 [micro]g/kg). These single high doses yielded a sustained uterotrophic response over 72 hr (Figure 2A) and were selected to avoid the complex transcriptional program that may result from the standard uterotrophic assay exposure regime in which each test compound is dosed by repeated administration on 3 consecutive days (Odum et al. 1997). Groups of 10 sexually immature mice [Alpk:APfCD-1; 19/20 days of age; maintained on RM1 diet (Special Diets Services Ltd., Witham, Essex, UK)] received a single subcutaneous injection Noun 1. subcutaneous injection - an injection under the skin injection, shot - the act of putting a liquid into the body by means of a syringe; "the nurse gave him a flu shot" of each compound or the test vehicle [arachis oil (AO); 5 mL/kg], and uterine RNA RNA: see nucleic acid. RNA in full ribonucleic acid One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic was isolated and pooled by group at each of the seven time points to determine gene expression levels among the 12,488 mouse genes represented on the Affymetrix MG-U74Av2 GeneChip (Affymetrix, High Wycombe High Wycombe (wĭk`əm), city (1991 pop. 69,575), Buckinghamshire, S England. The city is well known for its furniture industry and also has paper mills, sawmills, and engineering works. , UK). Transcript profiling was performed using MG-U74Av2 GeneChip and Microarray Analysis Suite 5.0 (Affymetrix). Normalization In relational database management, a process that breaks down data into record groups for efficient processing. There are six stages. By the third stage (third normal form), data are identified only by the key field in their record. and hierarchical clustering were performed with GeneSpring 6.0 (Silicon Genetics, Redwood City Redwood City, city (1990 pop. 66,072), seat of San Mateo co., W Calif., on San Francisco Bay; inc. 1868. Manufactures include commmunications, electrical, electronic, and medical equipment. , CA, USA). MIAME MIAME Minimal Information About A Microarray Experiment MIAME Minimum Information About a Microarray Experiment (Minimum Information About a Microarray Experiment)-compliant microarray data are available as supplementary information and submitted to the Gene Expression Omnibus (GEO) database (GEO 2004). These data were analyzed using unsupervised hierarchical clustering and yielded temporal relationships between the expression profiles of 3,450 genes that were either up- or down-regulated (> 1.5-fold) by [E.sub.2] and/or GEN (Figure 2B). Each chemical induced a similar, multistage mul·ti·stage adj. 1. Functioning in more than one stage: a multistage design project. 2. Relating to or composed of two or more propulsion units. transcriptional response (Figure 2B), although it is noteworthy that we observed variations in the magnitude and timing of both early (e.g., c-fos) and late (e.g., lactotransferrin) ER-responsive genes during the uterotrophic responses induced by [E.sub.2] and GEN (Figure 2C). [FIGURE 2 OMITTED] A detailed description of the molecular functions of the genes affected, together with their association with physiologic changes during uterine growth, has been reported (Orphanides et al. 2003) and will be described in more detail in a future publication (Moggs et al., unpublished data). These observations suggest that GEN does not induce "off-target" ER-independent transcriptional responses, that is, those associated with the properties of GEN other than estrogenicity. Furthermore, there was no evidence for the topoisomerase II-inhibiting properties of GEN in the bone marrow of the present mice despite demonstration of the sensitivity of that tissue to the potent micronucleus-inducing activity of the topoisomerase II inhibitor etoposide (data not shown). Together, these data led us to question whether a synthetic estrogen such as DES would also induce similar transcriptional responses in the immature mouse uterus. In order to avoid temporal vagaries in gene expression (e.g., Figure 2C), we decided to anchor our transcript profiling data to the phenotype phenotype (fē`nətīp'): see genetics. phenotype All the observable characteristics of an organism, such as shape, size, colour, and behaviour, that result from the interaction of its genotype (total genetic makeup) with of the grown uterus by employing equipotent uterotrophic doses of [E.sub.2], GEN, and DES. We compared the global gene expression profiles in the uteri of intact immature mice stimulated with three daily low doses of either GEN, DES, or [E.sub.2], with an exposure regimen the same as that used in a standard 3-day uterotrophic assay (Odum et al. 1997). The route of administration and the doses of GEN and DES used were as described by Newbold et al. (2001) in their equivalent-outcome carcinogenicity carcinogenicity /car·ci·no·ge·nic·i·ty/ (kahr?si-no-je-nis´i-te) the ability or tendency to produce cancer. carcinogenicity the ability or tendency to produce cancer. bioassays of these two chemicals. Three independent replicates of four groups of sexually immature mice (Alpk:APfCD-1; 19/20 days of age; maintained on RM1 diet) received three daily subcutaneous injections of GEN (50 mg/kg), [E.sub.2] (2.5 [micro]g/kg), or DES (2 lag/kg). Control animals received the vehicle, AO (5 mL/kg). These doses elicited similar uterotrophic responses (72 hr after the initial dose; Figure 3A, Table 1) and identical histologic changes in the uteri of the treated animals (Table 1). Uterine RNA was isolated and pooled for each of the 12 groups and analyzed for changes in gene expression levels using the same Affymetrix microarray of 12,488 mouse genes. The data were analyzed using two independent statistical methods. First, unsupervised hierarchical clustering defined the global relationships (Euclidean distances In mathematics, the Euclidean distance or Euclidean metric is the "ordinary" distance between two points that one would measure with a ruler, which can be proven by repeated application of the Pythagorean theorem. ) between the 12 gene expression profiles (Figure 3B). The three control groups clustered under one node, whereas the chemical treatment groups formed a separate node of compound-independent clusters, indicating equal similarity within and between the transcriptional responses induced by the three estrogens (Figure 3B). One-way analysis of variance (ANOVA anova see analysis of variance. ANOVA Analysis of variance, see there ), with Bonferroni (Holm holm n. Chiefly British An island in a river. [Middle English, from Old Norse h 1979) correction (familywise error rate In statistics, familywise error rate (FWER) is the probability of making one or more false discoveries, or type I errors among all the hypotheses when performing multiple pairwise tests[1][2]. < 0.05) to minimize false positives, identified 179 genes where expression levels were altered by one or more chemical treatments (Figure 3C). Remarkably, Tukey post hoc post hoc adv. & adj. In or of the form of an argument in which one event is asserted to be the cause of a later event simply by virtue of having happened earlier: testing revealed that all of these genes were affected in all nine compound treatment groups. [FIGURE 3 OMITTED] Table 2 highlights the high degree of similarity between the transcriptional responses to each of the three estrogens. These include established estrogen-responsive genes such as lactotransferrin, complement component 3, c-fos, small proline-rich protein 2A, and keratoepithelin (Hewitt et al. 2003; Naciff et al. 2003), together with many genes that have not previously been associated with estrogenicity (Table 2). Although these three estrogens can alter the expression of some genes with different magnitudes [e.g., peptidyl arginine arginine (är`jənĭn), organic compound, one of the 20 amino acids commonly found in animal proteins. Only the l-stereoisomer participates in the biosynthesis of proteins. deiminase II is up-regulated to a lesser extent by [E.sub.2] (1.86-fold [+ or minus] 0.27) relative to GEN (9.11-fold [+ or -] 0.33) and DES (5.15-fold [+ or -] 1.53); Table 2], the present data show that the same genes are affected during equivalent uterotrophic responses. Previous studies have revealed both similarities and differences between transcriptional responses induced at a single time point after exposure to [E.sub.2] and DES in the uteri of immature ovariectomized mice (Watanabe et al. 2003) and after exposure to either GEN, bisphenol A, or 170[alpha]-ethynyl estradiol estradiol /es·tra·di·ol/ (es?trah-di´ol) (es-tra´de-ol) the most potent estrogen in humans; pharmacologically, it is often used in the form of its esters (e.g., e. cypionate, e. in the reproductive tract of intact adult rats (Naciff et al. 2002). We suggest that these reported differences most probably arise from dose-dependent variations in the magnitude and kinetics kinetics: see dynamics. Kinetics (classical mechanics) That part of classical mechanics which deals with the relation between the motions of material bodies and the forces acting upon them. of gene expression (Figure 2C), rather than from the operation of distinct mechanisms of estrogenic action. Our data indicate that estrogens of differing provenance may have in common the potential for both beneficial and adverse health effects. This highlights the need for an holistic approach holistic approach A term used in alternative health for a philosophical approach to health care, in which the entire Pt is evaluated and treated. See Alternative medicine, Holistic medicine. to hazard at risk; liable to suffer damage or loss. See also: Hazard assessment wherein preconceptions are replaced by an objective assessment of the likely perturbations of physiologic functions caused by combined exposures to physiologic, synthetic, and plant-derived estrogens. This need is reinforced by data showing that plasma concentrations of isoflavones isoflavones (īˑ·sō·flāˈ·vōnz), n.pl phytoestrogenic compounds found in various plants, including red clover and soy. in infants fed soy formula are approximately 200 times higher than for those fed human milk (Setchell et al. 1997), by the estimated daily intake of approximately 29 mg of phytoestrogens for individuals taking dietary supplements (Committee on Toxicity of Chemicals in Food, Consumer Products and the Environment 2003), and by the demonstration that estrogens of different provenance can act additively in the rodent rodent, member of the mammalian order Rodentia, characterized by front teeth adapted for gnawing and cheek teeth adapted for chewing. The Rodentia is by far the largest mammalian order; nearly half of all mammal species are rodents. uterus (Tinwell and Ashby 2004).
Table 1. Blotted uterine weights and endometrial and epithelial
cell heights (mean [+ or -] SDI after exposure to [E.sub.2],
GEN, or DES for 3 consecutive days. (a)
Dose Blotted uterine
Compound (per kg) weight (m g)
AD 5 mL 13.0 [+ or -] 2.4
[E.sub.2] 2.5 [micro]g 45.3 [+ or -] 8.6 *
GEN 50 [micro]g 39.8 [+ or -] 5.3 *
DES 2.0 [micro]g 49.8 [+ or -] 13.0 *
Cell height ([micro]m)
Compound Endometrium Epithelium
AD 159.0 [+ or -] 23.1 (11) 11.4 [+ or -] 1.1
[E.sub.2] 246.1 [+ or -] 52.4 * (9) 23.3 [+ or -] 1.4 *
GEN 273.7 [+ or -] 63.3 * (12) 23.7 [+ or -] 3.1 *
DES 273.2 [+ or -] 55.9 * (10) 22.6 [+ or -] 4.0 *
There were 12 animals/group, but not all of the histopathology
samples were suitable for analyses; numbers in parentheses
indicate the number of animals per group from which the histology
data were generated.
(a) Data were assessed for statistical significance using a
two-sided Student t-test: * p < 0.01.
Table 2. Quantitative data for 179 differentially expressed genes
(from Figure 3C) regulated in the mouse uterus by all three
estrogens ([E.sub.2], GEN, and DES). (a)
Fold change in
expression (mean
[+ or -] SD)
GenBank
accession
Gene name no. [E.sub.2]
Up-regulated genes
Solute carrier family U74079 1.8 [+ or -] 0.01
9a3r1
Keratin complex 2-8 X15662 2.6 [+ or -] 0.2
Laminin beta 3 U43298 4.3 [+ or -] 0.1
Claudin 7 AF087825 4.5 [+ or -] 0.5
bHLH-Zip transcription U49507 2.6 [+ or -] 0.3
factor
RIKEN cDNA 1200008D14 AW208938 3.0 [+ or -] 0.3
Basic HLH-domain Y07836 5.9 [+ or -] 1.0
containing, class B2
RIKEN cDNA 9930104H07 AW122310 3.0 [+ or -] 0.3
Fucosyltransferase 2 AF064792 27.5 [+ or -] 1.2
Deleted in polyposis 1 U28168 1.8 [+ or -] 0.1
Microsomal glutathione AI843448 2.9 [+ or -] 0.2
S-transferase 3
Tumor-associated Ca Y08830 4.0 [+ or -] 0.3
signal transducer 2
Calpain 5 Y10656 5.5 [+ or -] 0.4
Mitochondrial creatine Z13969 9.7 [+ or -] 1.1
kinase
ATPase 6v1a1 AW123765 2.0 [+ or -] 0.1
Tumor-associated Ca AI563854 8.0 [+ or -] 0.4
signal transducer 2
Lymphocyte antigen 6 X04653 7.8 [+ or -] 0.9
complex, locus A
Chloride channel AV373378 26.4 [+ or -] 3.4
calcium-activated 3
Small proline-rich AJ005567 23.9 [+ or -] 1.5
protein 21
Oncoprotein induced AA615075 19.0 [+ or -] 3.1
transcript 1
Small proline-rich AJ005564 59.8 [+ or -] 8.4
protein 2F
Small proline-rich AJ005563 12.0 [+ or -] 1.0
protein 2E
Mucin 1 M84683 8.3 [+ or -] 0.6
Lipoocalin 2 X81627 150.3 [+ or -] 15.0
RIKEN cDNA 2210409B01 AF109906 3.5 [+ or -] 0.6
Interferon-activated M31418 7.9 [+ or -] 1.0
gene 202A
Nuclear ankyrin-repeat AA614971 3.7 [+ or -] 0.6
protein
RIKEN cDNA 5730469M10 AI850090 22.0 [+ or -] 5.8
RIKEN cDNA 1110034C02 AI837104 1.5 [+ or -] 0.1
IMAGE cDNA 4988271 AV373294 8.0 [+ or -] 2.5
RIKEN cDNA 5730493B19 AW122413 12.7 [+ or -] 0.3
Peptidoglycan AV092014 13.4 [+ or -] 1.5
recognition protein
Inhibin beta-B X69620 13.6 [+ or -] 3.1
CEA-related cell AF101164 11.9 [+ or -] 1.6
adhesion molecule 2
Keratin complex 1-19 M36120 4.4 [+ or -] 0.4
CEA-related cell M77196 15.9 [+ or -] 2.4
adhesion molecule 1
SRC family-associated AB014485 2.7 [+ or -] 0.04
phosphoprotein 2
Peptidoglycan AF076482 7.7 [+ or -] 1.9
recognition protein
CEA-related cell M77196 19.5 [+ or -] 3.9
adhesion molecule 1
CEA-related cell X67279 6.4 [+ or -] 0.7
adhesion molecule 1
Spermidine N1-acetyl L10244 8.3 [+ or -] 0.9
transferase
RIKEN cDNA 0610007007 AI851762 2.7 [+ or -] 0.1
Arginase 1 U51805 79.4 [+ or -] 9.8
Acetyl-coenzyme A
synthetase 2 AW125884 2.2 [+ or -] 0.2
v-erb-b2 homolog 3 AI006228 3.4 [+ or -] 0.4
Phospholipase D3 AF026124 2.6 [+ or -] 0.2
RIKEN cDNA 0610031J06 AW122935 1.9 [+ or -] 0.1
Complement component 1q X58861 2.1 [+ or -] 0.1
Scotin AW123754 2.0 [+ or -] 0.1
CD24a antigen M58661 3.2 [+ or -] 0.1
Argininosuccinate M31690 2.7 [+ or -] 0.3
synthetase 1
ATPase 6v1a1 U13837 2.1 [+ or -] 0.1
Gelsolin-like actin- X54511 3.6 [+ or -] 0.5
capping protein
Golgi phosphoprotein 2 AW125446 4.5 [+ or -] 0.5
Aldolase 1A Y00516 2.3 [+ or -] 0.2
Cathepsin L X06086 6.4 [+ or -] 0.8
CD14 antigen X13333 3.0 [+ or -] 0.1
Decay accelerating L41365 4.0 [+ or -] 0.1
factor 2
Actin-related protein AW212775 2.1 [+ or -] 0.2
2/3 complex 1B
Protective protein for J05261 2.0 [+ or -] 0.1
[beta]-galactosidase
Elastase 1 M27347 2.7 [+ or -] 0.1
Connexin 26 M81445 10.6 [+ or -] 1.0
Ceruloplasmin U49430 15.1 [+ or -] 2.8
Cathepsin H U06119 3.0 [+ or -] 0.2
Basigin Y16258 1.6 [+ or -] 0.1
Peptidylprolyl isomerase X67809 2.2 [+ or -] 0.2
C-associated
Glutathione reductase 1 AI851983 2.3 [+ or -] 0.2
START domain- X82457 1.5 [+ or -] 0.1
containing 3
CD68 antigen X68273 4.6 [+ or -] 0.6
RIKEN cDNA E030027H19 AW211760 2.7 [+ or -] 0.3
cDNA sequence B0004044 AI461767 3.1 [+ or -] 0.2
E74-like factor 3 AF016294 5.1 [+ or -] 0.8
Glutathione S- AI843119 5.0 [+ or -] 1.1
transferase omega 1
Interferon-stimulated AW122677 4.2 [+ or -] 0.1
protein 20
Clusterin D14077 3.6 [+ or -] 0.7
Galectin 3 X16834 7.4 [+ or -] 1.3
Small proline-rich AJ005559 51.1 [+ or -] 4.0
protein 2A (b)
Complement component K02782 14.8 [+ or -] 1.8
3 (b)
Small proline-rich AJ005561 220.3 [+ or -] 31.0
protein 2C
Small proline-rich AJ005565 9.4 [+ or -] 0.9
protein 2G
Prominin AF039663 3.5 [+ or -] 0.5
Lactotransferrin (b) J03298 88.7 [+ or -] 18.4
Carbonic anhydrase 2 M25944 7.9 [+ or -] 0.5
Complement component U47810 36.5 [+ or -] 4.4
factor 1
Mannosidase 2alphaB1 U87240 2.0 [+ or -] 0.2
Small proline-rich AJ005560 32.9 [+ or -] 3.7
protein 2B
Small proline-rich AJ005559 269.8 [+ or -] 23.7
protein 2A (b)
RIKEN cDNA 5830413E08 AI849939 3.3 [+ or -] 0.4
RIKEN cDNA 1110029F20 AW125508 4.1 [+ or -] 0.1
Annexin A3 AJ001633 2.7 [+ or -] 0.5
Peptidase 4 U51014 2.0 [+ or -] 0.1
Laminin gamma 2 U43327 6.3 [+ or -] 1.3
Ubiquitin-like 3 AW120725 1.5 [+ or -] 0.1
Urate oxidase M27695 23.8 [+ or -] 9.5
Amiloride binding AI197481 3.5 [+ or -] 1.0
protein 1
Keratin complex 1-19 AU040563 4.5 [+ or -] 1.0
Activated leukocyte cell L25274 3.6 [+ or -] 0.8
adhesion molecule
CCAAT/enhancer binding M61007 2.3 [+ or -] 0.1
protein [beta]
Peptidyl arginine AB013848 8.6 [+ or -] 0.7
deiminase, type I
Enolase 1 [alpha] AI841389 2.5 [+ or -] 0.3
p53 apoptosis effector AI854029 2.9 [+ or -] 0.3
related to Pmp22
[beta]-Glucuronidase M19279 1.9 [+ or -] 0.1
Leucine-rich AW230891 9.3 [+ or -] 1.1
[alpha]-2-glycoprotein
Quiescin 06 AW123556 3.7 [+ or -] 0.2
GADD45a U00937 1.9 [+ or -] 0.2
Alkaline phosphatase 2 J02980 9.2 [+ or -] 0.4
Immediate early X67644 5.5 [+ or -] 0.8
response 3
Progressive ankylosis AW049351 2.2 [+ or -] 0.1
RAS p21 protein AA163960 6.8 [+ or -] 0.9
activator 4
Tumor-associated calcium M76124 2.1 [+ or -] 0.2
signal transducer 1
Hydroxysteroid (17-beta) AA822174 1.9 [+ or -] 0.1
dehydrogenase 11
Platelet-activating U57746 1.9 [+ or -] 0.1
factor acetylhydrolase
1ba1
Branched chain U42443 2.4 [+ or -] 0.2
aminotransferase 1
RIKEN cDNA 2400004E04 AI846720 1.7 [+ or -] 0.1
Myeloblastosis oncogene M12848 2.8 [+ or -] 0.4
[K.sup.+] conductance AF042487 3.1 [+ or -] 0.2
calcium-activated
channel N4
ATPase 6v1b2 AI843029 1.7 [+ or -] 0.1
Cystic fibrosis M60493 3.4 [+ or -] 0.5
transmembrane
regulator
RIKEN cDNA 1110008P14 AI839839 4.3 [+ or -] 0.4
Fused toes Z67963 2.6 [+ or -] 0.2
Solute carrier family AW124340 3.5 [+ or -] 0.5
39a8
Cytochrome b-561 AI846517 2.2 [+ or -] 0.2
Secreted X13986 30.2 [+ or -] 3.3
phosphoprotein 1
Ion transport regulator X93038 5.3 [+ or -] 0.4
Fxyd3
Janus kinase 3 L40172 2.1 [+ or -] 0.2
Cytochrome b-245alpha AW046124 2.9 [+ or -] 0.4
RIKEN cDNA A430096B05 AI465965 6.3 [+ or -] 1.0
Small proline-rich AJ005568 8.6 [+ or -] 2.1
protein 2J
Cathepsin B M65270 2.2 [+ or -] 0.1
RIKEN cDNA 1600025H15 AI842734 2.2 [+ or -] 0.1
c-fos oncogene (b) V00727 3.2 [+ or -] 0.4
Guanine nucleotide AI843937 1.6 [+ or -] 0.1
binding protein
[gamma]5
Serine palmitoyl- U27455 1.6 [+ or -] 0.1
transferase Ic2
Cystatin B U59807 1.5 [+ or -] 0.1
Villin 2 X60671 1.9 [+ or -] 0.2
RIKEN cDNA 0610010012 AI849011 1.9 [+ or -] 0.1
Matrix metallo- L36244 47.8 [+ or -] 18.6
proteinase 7
RIKEN cDNA 4930422J18 AV376312 2.0 [+ or -] 0.3
RIKEN cDNA 1700017B05 AW049360 1.6 [+ or -] 0.1
Galactosidase beta 1 M57734 1.8 [+ or -] 0.1
Cathepsin C U74683 2.6 [+ or -] 0.1
Interferon-stimulated X56602 3.6 [+ or -] 0.6
protein 15
MAP kinase--interacting Y11092 1.8 [+ or -] 0.1
kinase 2
Glutathione S- X98056 3.5 [+ or -] 0.4
transferase theta 2
Homeobox B6 M18401 1.5 [+ or -] 0.02
Procollagen Vlalpha 3 AF064749 2.1 [+ or -] 0.2
Interferon regulatory U73037 11.7 [+ or -] 0.9
factor 7
Scavenger receptor class AB008553 2.7 [+ or -] 0.1
B2
Polyimmunoglobulin AB001489 8.1 [+ or -] 0.7
receptor
Proteasome subunit Y10875 2.1 [+ or -] 0.04
[beta]10
RIKEN cDNA 0610010E05 AV312736 2.9 [+ or -] 0.3
RIKEN cDNA 0610010E05 AI854839 3.7 [+ or -] 0.5
Xanthine dehydrogenase X75129 12.2 [+ or -] 2.2
Prominin AF039663 3.5 [+ or -] 0.2
Interferon-induced U43084 17.5 [+ or -] 2.9
protein IFIT1
Interferon-induced U43086 8.1 [+ or -] 2.3
protein IFIT3
Proteasome subunit U22033 2.0 [+ or -] 0.1
[beta]8
RIKEN cDNA 1600023A02 AW121336 1.9 [+ or -] 0.1
Small proline-rich AF057156 11.1 [+ or -] 3.7
protein 1A
MAP kinase-interacting AI845732 2.0 [+ or -] 0.1
kinase 2
Lymphocyte antigen 6 U47737 2.0 [+ or -] 0.01
complex, locus E
Guanylate nucleotide AJ007970 3.0 [+ or -] 0.1
binding protein 2
Peptidyl arginine D16580 1.9 [+ or -] 0.3
deiminase, type II (b)
Down-regulated genes
Solute carrier family AI838274 2.0 [+ or -] 0.2
29a1
Lymphocyte specific 1 D49691 1.6 [+ or -] 0.1
Claudin 5 U82758 2.0 [+ or -] 0.2
Potassium channel td12 AI842065 1.6 [+ or -] 0.04
Zinc finger homeobox 1a D76432 1.5 [+ or -] 0.1
Monoamine oxidase A AI848045 2.3 [+ or -] 0.2
Histidine decarboxylase X57437 4.8 [+ or -] 0.8
[alpha]-2 Adrenergic M97516 3.0 [+ or -] 0.3
receptor
Transcription factor 21 AF035717 1.8 [+ or -] 0.2
Homeobox D8 X56561 2.2 [+ or -] 0.1
Carboxypeptidase X2 AF017639 4.1 [+ or -] 0.7
RIKEN cDNA A230106A15 AI848841 3.8 [+ or -] 0.2
Reduced expression 3 AA790008 3.1 [+ or -] 0.2
TGF-[beta] binding AA838868 1.8 [+ or -] 0.1
protein 4
Keratoepithelin (b) L19932 11.5 [+ or -] 2.5
GLI-Kruppel family AB025922 11.6 [+ or -] 0.8
member GLI
Fold change in
expression (mean [+ or -] SD)
Gene name GEN DES
Up-regulated genes
Solute carrier family 2.0 [+ or -] 0.1 2.0 [+ or -] 0.2
9a3r1
Keratin complex 2-8 3.1 [+ or -] 0.2 3.1 [+ or -] 0.3
Laminin beta 3 5.5 [+ or -] 1.1 5.3 [+ or -] 0.7
Claudin 7 6.5 [+ or -] 1.0 5.8 [+ or -] 0.6
bHLH-Zip transcription 3.1 [+ or -] 0.3 2.9 [+ or -] 0.1
factor
RIKEN cDNA 1200008D14 3.5 [+ or -] 0.1 3.3 [+ or -] 0.3
Basic HLH-domain 6.6 [+ or -] 0.9 6.6 [+ or -] 0.8
containing, class B2
RIKEN cDNA 9930104H07 3.2 [+ or -] 0.4 3.3 [+ or -] 0.1
Fucosyltransferase 2 34.6 [+ or -] 8.5 36.7 [+ or -] 5.5
Deleted in polyposis 1 2.0 [+ or -] 0.02 2.0 [+ or -] 0.1
Microsomal glutathione 3.3 [+ or -] 0.6 3.3 [+ or -] 0.1
S-transferase 3
Tumor-associated Ca 4.6 [+ or -] 0.9 4.6 [+ or -] 0.3
signal transducer 2
Calpain 5 6.3 [+ or -] 1.0 6.6 [+ or -] 0.6
Mitochondrial creatine 12.2 [+ or -] 2.1 13.1 [+ or -] 1.8
kinase
ATPase 6v1a1 2.1 [+ or -] 13.2 2.1 [+ or -] 0.2
Tumor-associated Ca 9.2 [+ or -] 1.0 8.5 [+ or -] 0.4
signal transducer 2
Lymphocyte antigen 6 8.8 [+ or -] 0.3 8.5 [+ or -] 0.4
complex, locus A
Chloride channel 26.7 [+ or -] 1.0 26.2 [+ or -] 3.9
calcium-activated 3
Small proline-rich 24.7 [+ or -] 1.3 23.6 [+ or -] 1.6
protein 21
Oncoprotein induced 20.0 [+ or -] 1.2 18.9 [+ or -] 2.5
transcript 1
Small proline-rich 65.8 [+ or -] 1.1 60.6 [+ or -] 2.6
protein 2F
Small proline-rich 12.9 [+ or -] 0.8 12.1 [+ or -] 0.9
protein 2E
Mucin 1 8.6 [+ or -] 0.3 8.5 [+ or -] 0.5
Lipoocalin 2 175.7 [+ or -] 10.5 162.8 [+ or -] 6.5
RIKEN cDNA 2210409B01 4.0 [+ or -] 0.3 3.8 [+ or -] 0.8
Interferon-activated 9.8 [+ or -] 2.5 8.8 [+ or -] 0.7
gene 202A
Nuclear ankyrin-repeat 4.3 [+ or -] 0.7 4.1 [+ or -] 0.9
protein
RIKEN cDNA 5730469M10 30.5 [+ or -] 9.1 27.0 [+ or -] 6.5
RIKEN cDNA 1110034C02 1.6 [+ or -] 0.1 1.6 [+ or -] 0.03
IMAGE cDNA 4988271 10.6 [+ or -] 1.6 9.2 [+ or -] 1.1
RIKEN cDNA 5730493B19 19.0 [+ or -] 4.1 15.7 [+ or -] 0.9
Peptidoglycan 18.3 [+ or -] 3.0 14.5 [+ or -] 2.1
recognition protein
Inhibin beta-B 19.4 [+ or -] 4.7 16.0 [+ or -] 1.4
CEA-related cell 17.8 [+ or -] 5.3 14.2 [+ or -] 1.7
adhesion molecule 2
Keratin complex 1-19 5.5 [+ or -] 1.1 4.8 [+ or -] 0.5
CEA-related cell 23.9 [+ or -] 5.9 19.0 [+ or -] 3.8
adhesion molecule 1
SRC family-associated 3.2 [+ or -] 0.4 2.9 [+ or -] 0.3
phosphoprotein 2
Peptidoglycan 10.4 [+ or -] 2.7 9.0 [+ or -] 2.0
recognition protein
CEA-related cell 30.4 [+ or -] 8.8 22.2 [+ or -] 2.7
adhesion molecule 1
CEA-related cell 8.4 [+ or -] 1.1 7.1 [+ or -] 1.1
adhesion molecule 1
Spermidine N1-acetyl 11.2 [+ or -] 0.8 9.3 [+ or -] 0.6
transferase
RIKEN cDNA 0610007007 3.0 [+ or -] 0.3 2.8 [+ or -] 0.1
Arginase 1 131.9 [+ or -] 20.0 99.6 [+ or -] 14.5
Acetyl-coenzyme A
synthetase 2 2.0 [+ or -] 0.1 2.2 [+ or -] 0.2
v-erb-b2 homolog 3 3.1 [+ or -] 0.6 3.4 [+ or -] 0.4
Phospholipase D3 2.4 [+ or -] 0.2 2.6 [+ or -] 0.2
RIKEN cDNA 0610031J06 1.8 [+ or -] 0.1 1.8 [+ or -] 0.1
Complement component 1q 2.0 [+ or -] 0.1 2.0 [+ or -] 0.2
Scotin 2.0 [+ or -] 0.2 2.0 [+ or -] 0.2
CD24a antigen 3.1 [+ or -] 0.1 3.3 [+ or -] 0.3
Argininosuccinate 2.7 [+ or -] 0.3 2.8 [+ or -] 0.4
synthetase 1
ATPase 6v1a1 2.1 [+ or -] 0.2 2.2 [+ or -] 0.2
Gelsolin-like actin- 3.7 [+ or -] 0.5 3.7 [+ or -] 0.2
capping protein
Golgi phosphoprotein 2 4.6 [+ or -] 0.5 4.7 [+ or -] 0.1
Aldolase 1A 2.3 [+ or -] 0.1 2.4 [+ or -] 0.1
Cathepsin L 6.3 [+ or -] 1.1 6.9 [+ or -] 0.4
CD14 antigen 2.8 [+ or -] 0.1 3.1 [+ or -] 0.2
Decay accelerating 3.8 [+ or -] 0.8 3.8 [+ or -] 0.2
factor 2
Actin-related protein 2.1 [+ or -] 0.1 2.1 [+ or -] 0.2
2/3 complex 1B
Protective protein for 2.0 [+ or -] 0.1 2.0 [+ or -] 0.1
[beta]-galactosidase
Elastase 1 2.5 [+ or -] 0.2 2.6 [+ or -] 0.1
Connexin 26 9.8 [+ or -] 0.5 10.4 [+ or -] 0.8
Ceruloplasmin 15.0 [+ or -] 5.5 14.5 [+ or -] 2.1
Cathepsin H 3.0 [+ or -] 0.3 3.0 [+ or -] 0.3
Basigin 1.5 [+ or -] 0.1 1.7 [+ or -] 0.1
Peptidylprolyl isomerase 2.2 [+ or -] 0.1 2.4 [+ or -] 0.3
C-associated
Glutathione reductase 1 2.3 [+ or -] 0.1 2.6 [+ or -] 0.3
START domain- 1.4 [+ or -] 0.03 1.5 [+ or -] 0.01
containing 3
CD68 antigen 4.2 [+ or -] 0.6 5.0 [+ or -] 0.7
RIKEN cDNA E030027H19 2.7 [+ or -] 0.2 2.9 [+ or -] 0.1
cDNA sequence B0004044 3.4 [+ or -] 0.1 3.8 [+ or -] 0.5
E74-like factor 3 5.9 [+ or -] 0.5 6.5 [+ or -] 0.5
Glutathione S- 4.6 [+ or -] 0.6 4.1 [+ or -] 0.7
transferase omega 1
Interferon-stimulated 4.3 [+ or -] 0.7 3.4 [+ or -] 0.4
protein 20
Clusterin 3.9 [+ or -] 0.9 3.4 [+ or -] 0.4
Galectin 3 8.7 [+ or -] 0.7 6.9 [+ or -] 0.4
Small proline-rich 78.3 [+ or -] 15.7 44.2 [+ or -] 5.2
protein 2A (b)
Complement component 18.8 [+ or -] 1.0 14.8 [+ or -] 0.8
3 (b)
Small proline-rich 340.5 [+ or -] 37.1 214.1 [+ or -] 41.1
protein 2C
Small proline-rich 11.0 [+ or -] 0.3 9.6 [+ or -] 0.6
protein 2G
Prominin 3.6 [+ or -] 0.6 3.4 [+ or -] 0.3
Lactotransferrin (b) 99.2 [+ or -] 13.9 76.9 [+ or -] 21.8
Carbonic anhydrase 2 8.2 [+ or -] 0.9 7.3 [+ or -] 0.4
Complement component 38.4 [+ or -] 5.6 32.9 [+ or -] 4.2
factor 1
Mannosidase 2alphaB1 2.0 [+ or -] 0.1 1.9 [+ or -] 0.1
Small proline-rich 39.2 [+ or -] 1.9 30.7 [+ or -] 5.0
protein 2B
Small proline-rich 329.1 [+ or -] 42.9 59.1 [+ or -] 40.8
protein 2A (b)
RIKEN cDNA 5830413E08 3.3 [+ or -] 0.5 3.0 [+ or -] 0.3
RIKEN cDNA 1110029F20 4.1 [+ or -] 0.4 3.7 [+ or -] 0.1
Annexin A3 4.2 [+ or -] 0.7 3.2 [+ or -] 0.6
Peptidase 4 2.9 [+ or -] 0.3 2.3 [+ or -] 0.2
Laminin gamma 2 17.3 [+ or -] 6.8 10.2 [+ or -] 1.0
Ubiquitin-like 3 1.8 [+ or -] 0.1 1.7 [+ or -] 0.03
Urate oxidase 143.9 [+ or -] 62.9 43.8 [+ or -] 17.7
Amiloride binding 10.1 [+ or -] 0.8 6.0 [+ or -] 1.2
protein 1
Keratin complex 1-19 7.2 [+ or -] 1.0 5.6 [+ or -] 0.4
Activated leukocyte cell 5.1 [+ or -] 0.9 4.4 [+ or -] 0.5
adhesion molecule
CCAAT/enhancer binding 2.8 [+ or -] 0.3 2.6 [+ or -] 0.1
protein [beta]
Peptidyl arginine 15.8 [+ or -] 3.1 12.0 [+ or -] 1.7
deiminase, type I
Enolase 1 [alpha] 3.2 [+ or -] 0.5 3.0 [+ or -] 0.3
p53 apoptosis effector 4.1 [+ or -] 0.8 3.7 [+ or -] 0.5
related to Pmp22
[beta]-Glucuronidase 2.3 [+ or -] 0.2 2.2 [+ or -] 0.1
Leucine-rich 17.6 [+ or -] 4.1 14.5 [+ or -] 2.6
[alpha]-2-glycoprotein
Quiescin 06 5.5 [+ or -] 1.2 4.8 [+ or -] 0.7
GADD45a 2.6 [+ or -] 0.3 2.3 [+ or -] 0.1
Alkaline phosphatase 2 22.6 [+ or -] 6.2 15.8 [+ or -] 2.0
Immediate early 10.8 [+ or -] 2.2 8.9 [+ or -] 2.0
response 3
Progressive ankylosis 2.9 [+ or -] 0.4 2.8 [+ or -] 0.4
RAS p21 protein 14.2 [+ or -] 2.5 12.1 [+ or -] 1.7
activator 4
Tumor-associated calcium 2.7 [+ or -] 0.3 2.6 [+ or -] 0.2
signal transducer 1
Hydroxysteroid (17-beta) 2.3 [+ or -] 0.3 2.4 [+ or -] 0.1
dehydrogenase 11
Platelet-activating 2.2 [+ or -] 0.2 2.3 [+ or -] 0.1
factor acetylhydrolase
1ba1
Branched chain 3.4 [+ or -] 0.2 3.4 [+ or -] 0.01
aminotransferase 1
RIKEN cDNA 2400004E04 2.4 [+ or -] 0.2 2.3 [+ or -] 0.2
Myeloblastosis oncogene 5.6 [+ or -] 1.1 5.0 [+ or -] 0.2
[K.sup.+] conductance 4.2 [+ or -] 0.6 3.5 [+ or -] 0.8
calcium-activated
channel N4
ATPase 6v1b2 1.8 [+ or -] 0.1 1.8 [+ or -] 0.1
Cystic fibrosis 4.5 [+ or -] 0.8 3.9 [+ or -] 0.3
transmembrane
regulator
RIKEN cDNA 1110008P14 6.0 [+ or -] 1.0 5.1 [+ or -] 0.2
Fused toes 3.2 [+ or -] 0.3 2.8 [+ or -] 0.1
Solute carrier family 4.5 [+ or -] 0.7 3.8 [+ or -] 0.3
39a8
Cytochrome b-561 2.5 [+ or -] 0.2 2.3 [+ or -] 0.2
Secreted 47.4 [+ or -] 7.4 31.1 [+ or -] 2.7
phosphoprotein 1
Ion transport regulator 6.8 [+ or -] 1.1 5.5 [+ or -] 0.6
Fxyd3
Janus kinase 3 2.5 [+ or -] 0.2 2.2 [+ or -] 0.2
Cytochrome b-245alpha 3.6 [+ or -] 0.4 2.9 [+ or -] 0.2
RIKEN cDNA A430096B05 8.6 [+ or -] 0.03 6.3 [+ or -] 0.6
Small proline-rich 13.8 [+ or -] 3.2 8.5 [+ or -] 0.7
protein 2J
Cathepsin B 2.6 [+ or -] 0.2 2.2 [+ or -] 0.1
RIKEN cDNA 1600025H15 2.7 [+ or -] 0.3 2.2 [+ or -] 0.2
c-fos oncogene (b) 4.7 [+ or -] 0.9 3.7 [+ or -] 0.8
Guanine nucleotide 1.8 [+ or -] 0.1 1.6 [+ or -] 0.03
binding protein
[gamma]5
Serine palmitoyl- 2.0 [+ or -] 0.2 1.7 [+ or -] 0.1
transferase Ic2
Cystatin B 1.7 [+ or -] 0.1 1.5 [+ or -] 0.02
Villin 2 2.4 [+ or -] 0.3 1.9 [+ or -] 01
RIKEN cDNA 0610010012 2.5 [+ or -] 0.3 1.9 [+ or -] 0.03
Matrix metallo- 208.6 [+ or -] 83.3 48.2 [+ or -] 11.9
proteinase 7
RIKEN cDNA 4930422J18 2.9 [+ or -] 0.3 2.0 [+ or -] 0.2
RIKEN cDNA 1700017B05 2.0 [+ or -] 0.1 1.6 [+ or -] 0.1
Galactosidase beta 1 2.0 [+ or -] 0.1 1.7 [+ or -] 0.1
Cathepsin C 3.3 [+ or -] 0.2 2.3 [+ or -] 0.3
Interferon-stimulated 2.0 [+ or -] 0.2 3.8 [+ or -] 0.7
protein 15
MAP kinase--interacting 1.4 [+ or -] 0.1 1.9 [+ or -] 0.1
kinase 2
Glutathione S- 2.9 [+ or -] 0.4 3.6 [+ or -] 0.2
transferase theta 2
Homeobox B6 1.5 [+ or -] 0.1 1.6 [+ or -] 0.03
Procollagen Vlalpha 3 1.9 [+ or -] 0.2 2.1 [+ or -] 0.02
Interferon regulatory 8.1 [+ or -] 0.7 12.6 [+ or -] 1.5
factor 7
Scavenger receptor class 2.4 [+ or -] 0.3 2.6 [+ or -] 0.2
B2
Polyimmunoglobulin 6.2 [+ or -] 0.8 7.9 [+ or -] 1.0
receptor
Proteasome subunit 1.9 [+ or -] 0.04 2.1 [+ or -] 0.1
[beta]10
RIKEN cDNA 0610010E05 2.5 [+ or -] 0.2 2.7 [+ or -] 0.4
RIKEN cDNA 0610010E05 3.0 [+ or -] 0.1 3.4 [+ or -] 0.3
Xanthine dehydrogenase 8.9 [+ or -] 1.2 10.1 [+ or -] 1.5
Prominin 2.9 [+ or -] 0.2 3.1 [+ or -] 0.3
Interferon-induced 9.9 [+ or -] 1.5 14.0 [+ or -] 2.1
protein IFIT1
Interferon-induced 4.7 [+ or -] 0.2 6.7 [+ or -] 0.6
protein IFIT3
Proteasome subunit 1.8 [+ or -] 0.2 2.1 [+ or -] 0.1
[beta]8
RIKEN cDNA 1600023A02 1.7 [+ or -] 0.1 2.0 [+ or -] 0.04
Small proline-rich 8.6 [+ or -] 0.8 14.7 [+ or -] 0.8
protein 1A
MAP kinase-interacting 1.7 [+ or -] 0.1 2.0 [+ or -] 0.2
kinase 2
Lymphocyte antigen 6 1.7 [+ or -] 0.1 2.0 [+ or -] 0.1
complex, locus E
Guanylate nucleotide 2.0 [+ or -] 0.2 2.6 [+ or -] 0.1
binding protein 2
Peptidyl arginine 9.1 [+ or -] 0.3 5.2 [+ or -] 1.5
deiminase, type II (b)
Down-regulated genes
Solute carrier family 2.9 [+ or -] 0.3 2.5 [+ or -] 0.1
29a1
Lymphocyte specific 1 2.3 [+ or -] 0.2 1.8 [+ or -] 0.1
Claudin 5 2.8 [+ or -] 0.1 2.7 [+ or -] 0.5
Potassium channel td12 2.0 [+ or -] 0.04 2.1 [+ or -] 0.1
Zinc finger homeobox 1a 1.7 [+ or -] 0.1 1.8 [+ or -] 0.01
Monoamine oxidase A 2.7 [+ or -] 0.2 2.5 [+ or -] 0.4
Histidine decarboxylase 7.1 [+ or -] 0.6 5.4 [+ or -] 0.8
[alpha]-2 Adrenergic 4.2 [+ or -] 1.1 3.6 [+ or -] 0.3
receptor
Transcription factor 21 2.2 [+ or -] 0.2 2.0 [+ or -] 0.1
Homeobox D8 2.8 [+ or -] 0.03 2.5 [+ or -] 0.2
Carboxypeptidase X2 5.2 [+ or -] 1.0 4.2 [+ or -] 0.2
RIKEN cDNA A230106A15 4.7 [+ or -] 0.5 4.2 [+ or -] 0.7
Reduced expression 3 3.5 [+ or -] 0.3 3.2 [+ or -] 0.4
TGF-[beta] binding 2.1 [+ or -] 0.1 1.8 [+ or -] 0.2
protein 4
Keratoepithelin (b) 12.6 [+ or -] 0.9 9.7 [+ or -] 3.6
GLI-Kruppel family 12.2 [+ or -] 2.6 8.2 [+ or -] 2.6
member GLI
Abbreviations: CEA, carcinoembrionary antigen; SRC, steroid receptor
coactivator; TGF, transforming growth factor.
(a) Gene names (derived from the NetAffx database; Liu et al. 2003),
GenBank accession numbers (GenBank 2004), and mean ([+ or -] SDI fold
induction/repression of gene expression are shown in the same order
as the gene cluster in Figure 3C. (b) Genes mentioned in the text.
REFERENCES Aardema MJ, Albertini S Albertini is Italian surname. Notable people with this name include:
ECETOC European Chemical Industry Ecology and Toxicology Centre task force. Mutat Res 410:3-79. Akiyama T, Ishida J, Nakagawa S Nakagawa may refer to: In places:
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A type of cell found in connective tissue; produces collagen. Mentioned in: Skin Grafting and rat liver T51B cells. Biochem Biophys Res Commun 165:795-801. Duarte J, Ocete MA, Perez-Vizcaino F, Zarzuelo A, Tamargo J. 1997. Effect of tyrosine kinase and tyrosine tyrosine (tī`rəsēn), organic compound, one of the 20 amino acids commonly found in animal proteins. Only the l-stereoisomer appears in mammalian protein. phosphatase phosphatase /phos·pha·tase/ (-tas) any of a group of enzymes that catalyze the hydrolytic cleavage of inorganic phosphate from esters. phos·pha·tase n. inhibitors on aortic aortic pertaining to or emanating from the aorta. See also aortic arch. aortic aneurysm occurs most often in dogs, where it is caused by Spirocerca lupi larvae, turkeys and primates, causing dyspnea, cyanosis and coughing. contraction and induction of nitric oxide synthase. Eur J Pharmacol 338:25-33. Frasor J, Barnett DH, Danes JM, Hess R, Parlow AF, Katzenellenbogen BS. 2003. Response-specific and ligand ligand (lĭg`ənd), charged or uncharged molecule with one or more unshared pairs of electrons that can attach to a central metallic atom or ion to form an aggregate known as a complex ion (see chemical bond). dose-dependent modulation of estrogen receptor (ER) [alpha] activity by ER[beta] in the uterus. Endocrinology endocrinology Medical discipline dealing with regulation of body functions by hormones and other biochemicals and treatment of endocrine system imbalances. In 1841 Friedrich Gustav Henle first recognized “ductless glands,” which secrete products directly into 144:3159-3166. Genbank. 2004. Bethesda, MD:National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health. The NCBI is located in Bethesda, Maryland and was founded in 1988. , National Library of Medicine. 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Secondary sexual characteristics Noun 1. secondary sexual characteristic - the genetically determined sex characteristics that are not functionally necessary for reproduction (pitch of the voice and body hair and musculature) secondary sex character, secondary sex characteristic and menses menses /men·ses/ (men´sez) the monthly flow of blood from the female genital tract. men·ses n. in young girls seen in office practice: a study from the Pediatric Research Pediatric Research is one of the most respected peer-reviewed medical journals within the field of pediatrics in the world. It is the official publication of the American Pediatric Society, the European Society for Paediatric Research, and the Society for Pediatric in Office Settings network. Pediatrics 99:505-512. Hewitt SC, Deroo B J, Hansen K, Collins J, Grissom S, Afshari CA, et al. 2003. Estrogen receptor-dependent genomic responses in the uterus mirror the biphasic bi·pha·sic adj. 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Critical review and evaluation of the uterotrophic bioassay Bioassay A method for the quantitation of the effects on a biological system by its exposure to a substance, as well as the quantitation of the concentration of a substance by some observable effect on a biological system. for the identification of possible estrogen agonists and antagonists antagonists, n muscles that counterbalance agonists during specific movements. opioid Neurology A pain-attenuating peptide that occurs naturally in the brain, which induces analgesia by mimicking endogenous opioids at opioid : in support of the validation of the OECD OECD: see Organization for Economic Cooperation and Development. uterotrophic protocols for the laboratory rodent. 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Formulas are designed for infant consumption, and are usually based on either cow milk or soy milk. Use of infant formula has been decreasing in industrial countries for over forty years as a result of antenatal . Lancet 350:23-27. Tinwell H, Ashby J. 2004. Sensitivity of the immature rat uterotrophic assay to mixtures of estrogens. Environ Health Perspect 112:575-582. Watanabe H, Suzuki A, Kobayashi M, Lubahn DB, Handa H, Iguchi T. 2003. Similarities and differences in uterine gene expression patterns caused by treatment with physiological and non-physiological estrogens. J Mol Endocrinol 3:487-497. Weihua Z, Saji S, Makinen S, Cheng G, Jensen EV, Warner M, et al. 2000. Estrogen receptor (ER) [beta], a modulator Modulator Any device or circuit by means of which a desired signal is impressed upon a higher-frequency periodic wave known as a carrier. The process is called modulation. The modulator may vary the amplitude, frequency, or phase of the carrier. of ER[alpha] in the uterus. Proc Natl Acad Sci USA 97:5936-5941. Williams GM, latropoulos M, Cheung R, Radi L, Wang CX. 1993. Diethylstilbestrol liver carcinogenicity and modification of DNA in rats. Cancer Lett 68:193-198. Jonathan G. Moggs, John Ashby, Helen Tinwell, Fei Ling Lim, David J David J. Haskins (b. April 24, 1957, in Northampton, England) is a British alternative rock musician. He was the bassist for the seminal gothic rock band Bauhaus. Life and work . Moore, Ian Kimber, and George Orphanides Syngenta CTL See control key. 1. CTL - Checkout Test language. 2. CTL - Compiler Target Language. 3. CTL - Computational Tree Logic , Alderley Park, Cheshire, United Kingdom Address correspondence to J.G. Moggs, Syngenta CTL, Alderley Park, Cheshire, SK10 4TJ UK. Telephone: 44-1625-519315. Fax: 44-1625-585715. E-mail: jonathan.moggs@syngenta.com We thank A. Soames for the histopathology his·to·pa·thol·o·gy n. The science concerned with the cytologic and histologic structure of abnormal or diseased tissue. Histopathology The study of diseased tissues at a minute (microscopic) level. data, I. Kupershmidt and E. Hunter (Silicon Genetics) for advice on statistical analysis of microarray data, and T. Barlow (Food Standards Agency) for critical comments. This work was partially supported by the U.K. Food Standards Agency. The authors declare they have no competing financial interests. Received 12 February 2004; accepted 19 May 2004. |
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