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The lab rat bares its DNA to biologists.


Overshadowed in scientific circles for the past few decades by its smallish cousin the mouse, the rat is back in the limelight. This week, biologists announced that they have deciphered the full DNA sequence DNA sequence Genetics The precise order of bases–A,T,G,C–in a segment of DNA, gene, chromosome, or an entire genome. See Base pair, Base sequence analysis, Chromosome, Gene, Genome.  of the standard lab rat, setting the stage for a new flurry of biomedical research Biomedical research (or experimental medicine), in general simply known as medical research, is the basic research or applied research conducted to aid the body of knowledge in the field of medicine.  on this rodent and providing insight into mammalian evolution.

People and rats have a long history together, not all of it happy. The Chinese made the animal the first sign of their zodiac, but others have called it the devil's lapdog and blamed it for spreading the plague.

Scientific studies of laboratory-raised rats began in the early 1800s, many decades before researchers began to seriously investigate mice. Since then, researchers have identified or bred hundreds of rat strains that suffer conditions mimicking human diseases such as high blood pressure, obesity, diabetes, cancer, and arthritis.

The mouse's genes, however, proved easier to study and modify, so scientists deciphered the entire mouse DNA sequence, or genome, before turning to the rat. "The mouse has gotten a lot of good press, but the rat really is the workhorse of biomedical research," says Richard Gibbs of Baylor College of Medicine Baylor College of Medicine is a private medical school located in Houston, Texas, USA on the grounds of the Texas Medical Center. It has been consistently rated the top medical school in Texas and among the best in the United States.  in Houston.

In the April 1 Nature, Gibbs and an international team of more than 100 scientists unveiled the genome of the albino albino (ălbī`nō) [Port.,=white], animal or plant lacking normal pigmentation. The absence of pigment is observed in the body covering (skin, hair, and feathers) and in the iris of the eye.  laboratory strain of the rat called brown Norway (Rattus norvegicus). Also, the April Genome Research Genome Research is the title of a peer-reviewed scientific journal published by Cold Spring Harbor Laboratory Press. The focus of the journal is on genome-wide studies in any organism, including single gene studies that are placed in a genomic context.  features about 30 papers in which different groups of the same researchers analyze the rodent's DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 in various ways.

According to the Nature report, the rat genome contains less DNA than the human genome does but slightly more than the mouse genome. All three species possess similar numbers of genes, perhaps as few as 25,000, the scientists say.

Almost every known human-disease gene has a rat counterpart, Gibbs and his colleagues report. Other researchers, using a preliminary version of the rat genome, have already identified previously unrecognized human-disease genes. Last year, for instance, investigators found a rat gene that causes a kidney disorder in the animals and subsequently confirmed that mutations in the human version of the gene produce a similar disease in people.

The rat genome "has already stimulated some exciting advances," says Stephen Mockrin of the National Heart, Lung, and Blood Institute National Heart, Lung, and Blood Institute,
n.pr established in 1948, this division of the National Institutes of Health is responsible for research and education on cardiovascular, pulmonary, systemic diseases, and sleep disorders.
 in Bethesda, Md.

When scientists unveiled the mouse genome last year, they suggested that the rodent's DNA had changed much more than the human genome had since the two species diverged from a common ancestor (SN: 2/22/03, p. 122). Comparisons of rat and human DNA indicate that the rat's genome has also developed in the fast lane. "The whole rodent lineage seems to be evolving more quickly" than the human one, says Gibbs.

The rat is the third mammal--after people and mice--to have its DNA thoroughly sequenced. The new information could enable researchers to determine which stretches of DNA are common to all mammals and which are specific to rodents. Presumably pre·sum·a·ble  
adj.
That can be presumed or taken for granted; reasonable as a supposition: presumable causes of the disaster.
, any gene shared by all three species performs some vital function. Otherwise, evolution would have scrambled it in at least one species.

"Having [the genomes of] three mammalian species really improves the ability to do comparative genomics and find new genes," says Michael Gould of the University of Wisconsin-Madison “University of Wisconsin” redirects here. For other uses, see University of Wisconsin (disambiguation).
A public, land-grant institution, UW-Madison offers a wide spectrum of liberal arts studies, professional programs, and student activities.
.

Last year, Gould and his colleagues reported a technique that can inactivate in·ac·ti·vate
v.
1. To render nonfunctional.

2. To make quiescent.



in·acti·va
 a gene in rat embryos, a tool that mouse researchers have long had. It enables biologists to probe the function of newfound genes
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Title Annotation:Devil's Lapdog Gets Its Due
Author:Travis, J.
Publication:Science News
Date:Apr 3, 2004
Words:575
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