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TRADE NEWS: Agilent Technologies Launches Online Microarray Design Tool with Probe Design Capability; Latest Version of eArray Enables Researchers to Harness More Power from Agilent's Next Generation Microarray Platform.


SANTA CLARA Santa Clara, city, Cuba
Santa Clara (sän`tä klä`rä), city (1994 est. pop. 217,000), capital of Villa Clara prov., central Cuba.
, Calif. -- Agilent Technologies This article needs sources or references that appear in reliable, third-party publications. Alone, primary sources and sources affiliated with the subject of this article are not sufficient for an accurate encyclopedia article.  Inc. (NYSE NYSE

See: New York Stock Exchange
:A) today announced that its secure online custom microarray design tool now includes probe design capability. The new eArray v4.5 enables scientists to harness the flexibility, sensitivity and increased density of Agilent 60-mer SurePrint microarrays for their specific experiments.

In July, Agilent began shipping its next generation SurePrint DNA microarrays containing more than 244,000 features on a standard 1" x 3" slide, optimized for applications such as gene expression, array-based comparative genomic hybridization hybridization /hy·brid·iza·tion/ (hi?brid-i-za´shun)
1. crossbreeding; the act or process of producing hybrids.

2. molecular hybridization

3.
 (aCGH), chromatin immunoprecipitation Chromatin immunoprecipitation (ChIP) assay, is a method used for experiments in molecular biology. The purpose of this assay is to determine whether proteins including (but not limited to) transcription factors bind to a particular region on the endogenous chromatin of  on a chip (ChIP-on-chip), splice variant analysis, DNA methylation DNA methylation  

The modification of a strand of DNA after it is replicated, in which a methyl (CH3) group is added to any cytosine molecule that stands directly before a guanine molecule in the same chain.
 and microRNA studies.

"The ability to perform gene expression probe design on-line will save customers substantial amounts of time and money," said Scott Harrison Scott Harrison (born August 19 1977) was the first Scottish boxer to regain the World Boxing Organisation featherweight championship. Life
Scott Harrison was born in Bellshill, Lanarkshire, but lived most of his life in Cambuslang.
, Agilent custom microarray marketing manager. "Researchers can now use eArray v4.5 to quickly design probes to their target sequences at no cost, and they have the option of having Agilent design the probes. Our customers are closer than ever to an unfettered ability to design and manufacture any probe set for any application and any genome."

Agilent eArray v4.5 users can query databases containing more than 21 million tiled CGH CGH Comparative Genomic Hybridization
CGH Changi General Hospital (Singapore)
CGH Computer-Generated Hologram
CGH Community General Hospital (Syracuse, NY) 
 and ChIP-on-chip probes, allowing them to create high-resolution arrays that specifically target genomic regions of interest. Probe libraries from Agilent's entire portfolio of catalog microarrays are available to browse, download, save and repurpose for customer designs. eArray v4.5 is the only web-based application See Web application.  that enables researchers to easily design their own microarrays to many formats and then submit print requests directly to manufacturing facilities at their own convenience.

The new eArray v4.5 contains genome-wide mouse and human ChIP probe databases, each containing 13 million probes, and mouse and human probe data sets of 8 million probes each for CGH applications. The design tool provides enhanced search functions to access these datasets for use in high-density aCGH and ChIP-on-chip experiments. In addition, the eArray v4.5 provides utilities that enable customers to upload their own gene expression, aCGH and ChIP-on-chip probe content, as part of the microarray-creation process.

In addition to the above model organisms and new functionality, Agilent continues to expand the genomic datasets available through eArray. The most recent additions are:

--Rhesus Macaque macaque (məkäk`), name for Old World monkeys of the genus Macaca, related to mangabeys, mandrills, and baboons. All but one of the 19 species are found in Asia from Afghanistan to Japan, the Philippines, and Borneo.  -- A second-generation rhesus macaque microarray developed by the Michael Katze Laboratory and the Primate Genomics Division of the Washington National Primate Center, University of Washington, is now available. Based on newly released Baylor Rhesus Genome Project genome project 1 The Human Genome Project, see there 2. A general term for a coordinated research initiative for mapping and sequencing the genome of any organism  sequences, this microarray contains 22,559 60-mer oligo sequences corresponding to 17,173 distinct rhesus macaque genes, 468 human genes, 96 viral genes (representing 27 different viruses) and 350 human microRNAs. Agilent contributed probe design services and in-situ synthesis of calibration microarrays used in the manufacture and testing of the new rhesus array.

Professor Katze, head of the Primate Genomics Division, developed the first commercial rhesus macaque-specific oligonucleotide microarray in fall 2004, collaborating with Agilent. The rhesus macaque is a widely used primate model to study human disease and development, particularly HIV HIV (Human Immunodeficiency Virus), either of two closely related retroviruses that invade T-helper lymphocytes and are responsible for AIDS. There are two types of HIV: HIV-1 and HIV-2. HIV-1 is responsible for the vast majority of AIDS in the United States.  and AIDS. Because there were no commercial rhesus macaque microarrays until last year, rhesus macaque researchers were restricted to either examining one gene at a time or using human microarrays.

Katze lab bioinformaticist Jim Wallace, who led the new rhesus microarray project, said, "We received excellent support from Scott Harrison and the eArray Group at Agilent from initial concept through manufacture and testing of the new array."

--Bovine. "Bos Taurus" is an agriculturally and economically important livestock species, and is also a useful large-animal model for metabolic and reproductive studies. The bovine microarray, developed by ViaLactia Bioscience in collaboration with Agilent, contains 21.475 unique 60-mer probes, representing approximately 19,500 distinct bovine genes. The probes were developed by clustering more than 450,000 mRNA and EST EST electroshock therapy.

EST
abbr.
electroshock therapy
 sequences available from public sources and ViaLactia's proprietary databases, and were complemented by putative transcript sequences identified by NCBI NCBI National Center for Biotechnology Information (NIH)
NCBI National Coalition Building Institute
NCBI National Council for the Blind of Ireland (Dublin, Ireland) 
 from the second draft of the bovine genome (Btau 2.1). Bovine miRNAs are represented by 219 array probes. The majority of probe target sequences are extensively curated by expert biologists and contain dense functional annotation derived from their human orthologues. This microarray is a third-generation design and a continuation of bovine microarray development commenced by ViaLactia and Agilent in February 2001. More than 500 arrays have been successfully used and verified by three independent laboratories for gene-expression profiling and CGH applications.

--Dog. "Canis familiaris" (domestic dog) is an important biomedical bi·o·med·i·cal
adj.
1. Of or relating to biomedicine.

2. Of, relating to, or involving biological, medical, and physical sciences.
 organism for research in cardiology, cancer, diabetes, behavioral disorders, toxicology and numerous other human conditions with suspected genetic origins. Centuries of selected inbreeding inbreeding, mating of closely related organisms. Inbreeding is chiefly used as a means of insuring the preservation of specific desired traits among the offspring of purebred animals (see breeding).  and resulting narrow gene pools of individual breeds have linked specific breeds with unique susceptibility to certain diseases, making them particularly useful for studying the genetic bases for these diseases in both dogs and humans. Each 44,290-feature microarray contains 42,034 probes representing predicted Canis familiaris genes. The sequence and annotation information is based on the canine genome from public data sources of RefSeq (Release 6), Unigene (build #12) Ensembl (Release 32), and TIGR TIGR The Institute for Genomic Research
TIGR Treasury Investment Growth Receipt
TIGR This Is Getting Ridiculous
TIGR Thermally Induced Gallium Removal
TIGR TSPI Interface for GPS/RAJPO
 (Release 6, January 2005). Agilent developed the content of this microarray with researchers at Johns Hopkins Medical Institute.

There is no cost for Agilent customers to use eArray. To date, there are more than 350 organizations registered with eArray, representing 35 countries on six continents. eArray can be accessed at earray.chem.agilent.com/earray.

About Agilent in Genomics

Agilent is a leading worldwide provider of microarray-based, genomics research solutions. Agilent's end-to-end solution includes reagents for sample preparation and microarray processing; hardware for sample QC and high-throughput microarray scanning; 60-mer oligo microarrays on industry-standard 1" x 3" glass slides for gene expression; comparative genomic hybridization and chromatin immunoprecipitation applications; custom microarray design services; and industry-leading GeneSpring and Rosetta software products for data analysis.

About Agilent Technologies

Agilent Technologies Inc. (NYSE:A) is the world's premier measurement company and a technology leader in communications, electronics, life sciences and chemical analysis. The company's 20,000 employees serve customers in more than 110 countries. Agilent had net revenue of $5.1 billion in fiscal 2005. Information about Agilent is available on the Web at www.agilent.com.

NOTE TO EDITORS: Press releases, photography and other information can be accessed on the Agilent Life Sciences and Chemical Analysis newsroom at www.agilent.com/about/newsroom/lsca.

Further technology, corporate citizenship Corporate Citizenship

The extent to which businesses are socially responsible in meeting legal, ethical and economic responsibilities placed on them by shareholders. The aim it to create higher standards of living and quality of life in the community in which it operates, while
 and executive news is available on the Agilent news site at www.agilent.com/go/news.
COPYRIGHT 2006 Business Wire
No portion of this article can be reproduced without the express written permission from the copyright holder.
Copyright 2006, Gale Group. All rights reserved. Gale Group is a Thomson Corporation Company.

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Publication:Business Wire
Geographic Code:1USA
Date:Sep 12, 2006
Words:1061
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