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Serotype III Streptococcus agalactiae from Bovine milk and human neonatal infections (1).


Streptococcus agalactiae Streptococcus agalactiae A streptococcus normally found in the GI tract, which may cause UTIs, subacute bacterial endocarditis. See Group A Streptococcus, Group B Streptococcus.  (group B streptococcus group B streptococcus Streptococcus agalactiae A streptococcus classified into 7 capsular serotypes, which is the leading cause of sepsis and meningitis in neonates; GBS affects 1.  [GBS See GB/sec. ]) causes invasive human infections and bovine mastitis mastitis (măstī`tĭs), inflammation of the breast. Mastitis most commonly occurs in nursing mothers between the first and third weeks after childbirth, usually of the first child. . This study examined the genetic relationship between bovine and human serotype serotype /se·ro·type/ (ser´o-tip) the type of a microorganism determined by its constituent antigens; a taxonomic subdivision based thereon.

se·ro·type
n.
See serovar.

v.
 III GBS by using molecular techniques that classify human serotype III GBS into four distinct phylogenetic phy·lo·ge·net·ic
adj.
1. Of or relating to phylogeny or phylogenetics.

2. Relating to or based on evolutionary development or history.
 lineages. Bovine serotype III GBS were largely contained in two lineages, which are distinct from the two major lineages (restriction digest restriction digest

a unique family of DNA fragments produced by digestion of a given DNA molecule by a particular restriction enzyme; usually visualized by agarose gel electrophoresis and ethidium bromide or other fluorescent procedures.
 types III-2 and III-3) that infect human neonates. One of the bovine lineages closely resembles the human III-1 lineage, whose members occasionally cause human neonatal infections. The bovine strains in the other lineage characteristically have an initiation factor initiation factor
n. Abbr. IF
Any of several soluble proteins involved in the initiation of protein synthesis and released from the ribosome as it progresses into chain elongation.
 IF2 gene (infB) H allele allele (əlēl`): see genetics.
allele

Any one of two or more alternative forms of a gene that may occur alternatively at a given site on a chromosome.
 and multilocus sequence types that are not found in human GBS strains. Evidence suggests that this "H allele" lineage is related to the human III-3 lineage. These results support the assertion that human and bovine GBS are largely unrelated and provide further insight into the genetic relation between human and bovine GBS.

**********

Streptococcus agalactiae (group B streptococcus [GBS]) is the major etiologic agent of invasive neonatal infections in humans in industrialized in·dus·tri·al·ize  
v. in·dus·tri·al·ized, in·dus·tri·al·iz·ing, in·dus·tri·al·iz·es

v.tr.
1. To develop industry in (a country or society, for example).

2.
 countries, causing sepsis, pneumonia, meningitis, osteomyelitis osteomyelitis (ŏs'tēōmī'əlī`tĭs), infection of the bone and bone marrow. Direct infection of bone usually occurs through open fractures, penetrating wounds, or surgical operations. , and soft tissue infections (1). GBS has also been increasingly recognized as an important pathogen in immunocompromised immunocompromised /im·mu·no·com·pro·mised/ (-kom´pro-mizd) having the immune response attenuated by administration of immunosuppressive drugs, by irradiation, by malnutrition, or by certain disease processes (e.g., cancer).  and elderly persons (2,3). GBS emerged as an important cause of neonatal infections in the 1960s; before this time, it was mainly recognized as a cause of bovine mastitis (4). Most data suggest that GBS strains that infect humans are distinct from strains isolated from bovine sources, since bovine strains frequently cannot be typed with antisera to determine capsular cap·su·lar  
adj.
Of, relating to, or resembling a capsule.

Adj. 1. capsular - resembling a capsule; "the capsular ligament is a sac surrounding the articular cavity of a freely movable joint and attached to the bones"
 polysaccharide polysaccharide: see carbohydrate.
polysaccharide

Any of a large class of long-chain sugars composed of monosaccharides. Because the chains may be unbranched or branched and the monosaccharides may be of one, two, or occasionally more kinds,
 serotype, often express protein antigens not found on human isolates, and tend to have different biochemical properties (5 8). The possibility remains, however, that subgroups of GBS infect both humans and cows. If so, these two closely associated hosts could act as reservoirs for each other and sites for the emergence of novel pathogens.

A number of molecular methods, including multilocus enzyme electrophoresis, pulsed-field gel electrophoresis gel electrophoresis
n.
Electrophoresis performed in a gel composed of agarose, polyacrylamide, or starch.
 (PFGE PFGE Pulsed-Field Gel Electrophoresis ) of restriction enzyme restriction enzyme

Protein (more specifically, an endonuclease) produced by bacteria that cleaves DNA at specific sites along its length. Thousands have been found, from many different bacteria; each recognizes a specific nucleotide sequence.
 digest products of genomic DNA genomic DNA
n.
The full complement of DNA contained in the genome of a cell or organism.
, randomly amplified polymorphic polymorphic - polymorphism  DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 (RAPD RAPD Randomly Amplified Polymorphic DNA
RAPD relative afferent pupillary defect (ophthalmology; aka Marcus-Gunn Pupil) 
) analysis, and multilocus sequence typing Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci. The procedure characterizes isolates of bacterial species using the DNA sequences of internal fragments of multiple (usually seven) housekeeping genes.  (MLST MLST Multi Locus Sequence Typing
MLST Medical Logistics Support Team
MLST Mini Losi Super Truck (1/18th scale radio control vehicle) 
), have been used to demonstrate that the population of GBS that infects humans is highly clonal and limited to a relatively small number of phylogenctic lineages (9-13). Martinez and colleagues reported in 2000 that a large sample of GBS isolated from cow's in Quebec Province in Canada could be classified into five major RAPD groups, which indicates that this sample of bovine GBS also comprised a limited number of lineages (7).

The Quebec sample is particularly useful for further investigating the relationship between bovine and human GBS because most typeable bovine isolates in the sample were serotype III. Serotype III GBS strains account for a substantial proportion of early-onset neonatal human GBS infections and almost all late-onset neonatal infections (2). Four distinct phylogenetic lineages of human serotype III GBS have been identified by PFGE of restriction digest patterns and designated restriction digest patterns type III-1, III-2, III-3, and III-4 (11). Human GBS strains can also be assigned to each restriction digest pattern type by a distinct set of molecular markers, which include analysis of nucleotide substitutions in the centrally conserved region The term Conserved region may refer to:
  • Conservation (genetics)
  • Highly conserved sequence
 of the translation infB, the presence or absence of the inserted sequences GBSi1 and IS1548 in three chromosomal loci loci

[L.] plural of locus.

loci Plural of locus, see there
, and MLST (9,11).

RAPD analysis of human GBS isolates collected with the Quebec bovine isolates suggested that the serotype III bovine strains and human GBS strains were largely unrelated, although a definite conclusion was hindered by the small number of human isolates in the study. The obstacle presented by the small human sample size can now be circumvented by the use of the molecular markers described above that identify human phylogenetic lineages of GBS, but which have not yet been applied to the study of GBS from nonhuman sources. We reexamined the Quebec sampie with these molecular markers to better understand the genetic relationship between bovine serotype III GBS and human serotype III GBS.

Methods

Bacterial Isolates

The serotype III GBS were isolated from bovine milk or from vaginal and rectal swab specimens from asymptomatic pregnant women in Quebec Province, Canada, during 1996 and 1997, as previously described (7). RAPD analysis of the 224 bovine GBS isolates had assigned 210 of the isolates to four RAPD groups (I-IV); the remaining 14 isolates were ungrouped (Figure). A total of 70 of the 82 original serotype III GBS strains were recovered for this study. The remaining GBS in this collection were not serotype III or were nontypeable. Bovine isolates were studied from all RAPD groups except RAPD group I, which contained a single bovine serotype III GBS isolate that could not be recovered. Genomic DNA was extracted with the Qiagen DNeasy Tissue Kit (Qiagen, Valencia, CA) from individual colonies grown overnight in broth.

[FIGURE OMITTED]

Molecular Analyses

The central portion of infB was amplified from bacterial DNA by polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  (PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
) with oligonucleotide primers, as described by Hedegaard et al. (14). Each amplicon was purified and sequenced.

The presence or absence of the inserted sequences GBSi I and IS 1548 in the respective chromosomal loci was determined by using PCR of bacterial DNA with primer pairs flanking each of three sites, as previously described (11). In human serotype III GBS, the first locus is an internal region of hylB, the gene encoding hyaluronidase Hyaluronidase

Any one of a family of enzymes, also known as hyaluronate lyases or spreading factors, produced by mammals, reptiles, insects, and bacteria, which catalyze the breakdown of hyaluronic acid.
, which is either interrupted by IS1548 or is intact. The second locus is the region between scpB and lmb, the genes encoding streptococcal streptococcal /strep·to·coc·cal/ (-kok´al) pertaining to or caused by a streptococcus.
Streptococcal (Streptococcus)
Pertaining to any of the Streptococcus bacteria.
 C5a-ase and a laminin-binding protein, which either contains GBSi1, IS1548, or no insert. The third locus lies between ftsY and sag0728, two open reading frames (ORFs) with gene products of unknown function, which contains GBSi1 or no insert. The latter locus is either referred to as the AW-10 locus (as we refer to it) or the Y locus, according to according to
prep.
1. As stated or indicated by; on the authority of: according to historians.

2. In keeping with: according to instructions.

3.
 Luan et al. (15).

MLST was carried out on 46 selected strains as previously described, and a sequence type was assigned to each strain (9). The sequences of the alleles that make up the novel MLST sequence types described in this manuscript can be found at http://sagalactiae.mlst.net (9). DNA dot blots were performed by using a 96-chamber vacuum manifold Not to be confused with Manifold vacuum.

In quantum field theory, the vacuum state may be degenerate. Each pure vacuum state generates its own superselection sector, of course.
 and [[sup.32]p]-dCTP labeled probes as previously described (16).

The complete sequences of the infB gene H allele and the novel IS1563-like insertion sequence insertion sequence
n.
Any of several discrete DNA sequences that repeat at various sites on a bacterial chromosome, on certain plasmids, and on bacteriophages and that can move from one site to another on the chromosome, to another plasmid in the same
 described in this article are available in the GenBank database under accession nos. AY429663 and AY437915, respectively.

Results

Analysis of infB Alleles in Bovine GBS

All human serotype III GBS have either the A or C allele of the gene encoding translation-initiation factor IF2 (infB allele, Table 1). Twenty-five of the 62 Quebec bovine isolates carried the A allele, and 2 carried the C allele, which raises the possibility that these 27 bovine GBS could be closely related to human GBS (Table 2). No strains bearing the B allele were identified, and only one strain carried the D allele. Serotype III GBS that bear the D allele are unlikely to be isolated from humans because all human GBS strains bearing the D allele have thus far been serotype la. The remaining 34 strains contained a previously unidentified infB allele, which we have designated the H allele. The infB H allele differs from other previously identified infB alleles (designated A-G A-G Air-to-Ground ) by two, three, or five nucleotide substitutions within the central conserved portion of the infB gene and most closely resembles the infB A allele (11,14). All 34 of the strains bearing the H alleles are bovine in origin (Table 2). The infB H allele has not been previously encountered in approximately 700 GBS isolates isolated from human sources studied in our laboratory, including over 150 serotype III strains (unpub. data; [11]). These observations suggest that GBS bearing the infB H allele rarely, if ever, colonize col·o·nize  
v. col·o·nized, col·o·niz·ing, col·o·niz·es

v.tr.
1. To form or establish a colony or colonies in.

2. To migrate to and settle in; occupy as a colony.

3.
 or infect humans.

Relationship between infB Allele and RAPD Group

The possibility that the A or C allele bovine strains could be related to human GBS was investigated by examining the distribution of the bovine A or C allele isolates among the groups previously determined by RAPD analysis (Figure) (7). Of the 25 bovine A allele isolates, 19 were found in RAPD group IV-A, and 2 were found in RAPD group IV-C, which suggests that at least some of the bovine A allele isolates could be genetically related to human GBS since human A allele isolates are also found in these two RAPD clusters (Table 2, Figure). The two bovine C allele isolates are in RAPD group IV-C clustered with two human C allele isolates and thus appear closely related to human C allele isolates based on RAPD analysis. As expected, neither the single bovine D allele isolate nor the 34 bovine II allele isolates cluster with human isolates by RAPD analysis (Table 2).

Identification of Bovine Serotype III GBS Related to Type III-1 GBS

The bovine A and C allele isolates were further examined by using techniques that distinguish the four known human serotype III GBS lineages. These techniques include determining the presence or absence of inserted sequences in three previously identified loci and determining the strains' sequence types by MLST (Table 1). Twenty-three of the 25 A allele bovine isolates appear closely related to human restriction digest pattern type III-1 strains because the isolates lack inserted sequences at any of the three loci examined and had a sequence type (ST) identical to those of previously studied III-1 strains (ST-23) or that was different by only one allele (ST-90, ST-92, or ST-94) (Table 3). Thus, a substantial proportion of the serotype III bovine GBS in this sample appear to come from a lineage that is associated with invasive neonatal disease, albeit rarely (9,17,18). Bovine III-1 strains appear to be genetically heterogeneous since they are found in RAPD groups III, IV-A, and IV-C, but no human III-1 strains were found in this sample; thus, the bovine III-1 strains most closely related to human III-1 strains could not be identified in this sample. Nineteen of the III-1 bovine isolates appear to lack the scpb-lmb locus because PCR with primers flanking the intergenic locus of lmb and scpB did not produce an amplicon.

Seven of the A allele strains appear to be restriction digest pattern type III-2 strains on the basis of an analysis of inserted sequences and MLST (Table 3). Only one of these seven isolates, NI-96-2836, is of bovine origin, however, and is found in RAPD group III In the periodic table Group III covered what are now called
  • Group 13 elements: boron (B), aluminium (Al), gallium (Ga), indium (In), thallium (Tl)
  • Group 3 elements: scandium (Sc) and yttrium (Y) plus the Lanthanide and Actinide series elements.
, whereas the six human A allele isolates are found in RAPD groups IV-A and IV-C. These data suggest that the bovine NI-96-2836 strain is genetically divergent from human III-2 strains, despite sharing the same infB allele, inserted sequences, and ST with human III-2 strains. These data also suggest that restriction digest pattern type III-2 strains, a major cause of human neonatal infections, are rarely, if ever, isolated from bovine milk.

One of the two remaining A allele strains, SH-96-4807, appears indistinguishable from III-3 strains on the basis of MLST because it has ST-17, which is characteristic of III-3 strains. Unlike III-3 strains, however, SH-96-4807 has no inserted sequences in any of the three sites and contains an infB A allele instead of the C allele typical of III-3 strains. The remaining A allele isolate, SH-96-3696, appears to be most closely related to H allele strains, on the basis of its RAPD group, inserted sequences, and ST. No bovine isolate related to restriction digest pattern type III-4 was found in this sample.

The four C allele isolates have the typical inserted sequences and ST (ST-17) found in restriction digest pattern type III-3 strains, with the exception of human isolate 1004A, which has a truncated form of IS1548 in the scpb-lmb intergenic region An Intergenic region is a stretch of DNA sequences located between clusters of genes that comprise a large percentage of the human genome but contain few or no genes. Occasionally some intergenic DNA acts to control genes close by, but most of it has no currently known function.  (Table 4). These strains, which cluster together in RAPD Group IV-C, were isolated from both human and bovine sources. These data indicate that strains from the restriction digest pattern type III-3 lineage infect both humans and bovine udders but that bovine III-3 strains are rare. The only D allele strain has ST-93, an ST which differs by at least three alleles from all the STs previously described for human GBS, which again indicates that D allele serotype III GBS rarely or never colonize humans.

Analysis of H Allele Isolates

Ten H allele isolates were selected to represent strains from RAPD Group II, Group III, and the ungrouped isolates and analyzed in the same fashion. As shown in Table 5, all of the isolates studied have large inserts in the AW-10 site. The 1,700-bp inserts would be the correct size for the GBSi1 insert found in III-3 strains, and sequencing demonstrated an intact copy of GBSi1 in a 1,700-bp amplicon from one of the strains. A 3,000-bp insert from one strain was amplified and sequenced and found to comprise GBSi1, interrupted by an IS3-like insertion sequence identical to sequences found in both the genome MI strain of S. pyogenes and the genome serotype V strain of S. agalactiae (19,20).

A 3,400-bp insert was sequenced and found to consist of an inserted sequence that has identical direct and inverted repeat inverted repeat

blocks of nucleotide sequence that are present in more than one copy, but in a reverse order, such as ABCDE and E,D,C,B,A,; they may be terminal or internal. Called also indirect repeat. See also palindrome.
 sequences to the insertion sequence IS1563, but it has a predicted amino acid amino acid (əmē`nō), any one of a class of simple organic compounds containing carbon, hydrogen, oxygen, nitrogen, and in certain cases sulfur. These compounds are the building blocks of proteins.  sequence that is 75% identical to that of IS1563. This IS1563-like insertion sequence is located upstream of GBSi1 exactly as IS1563 is found upstream of GBSi1 in this locus in restriction digest pattern type II-2 strains (11).

The AW-10, hylB, and scpb-lmb loci were studied in the remaining H allele strains not shown in Table 5. No inserted sequences were found in the AW-10 site in seven isolates, while the remaining strains have either the 1,700-bp, 3,000-bp, or 3,400-bp inserts at AW-10. No inserted sequences were found in the hylB and scpb-lmb sites in any of the H allele strains. Two of the H allele strains, both of which are in RAPD group IV-B, appear to lack the scpb-lmb locus.

MLST shows that 8 of these 10 H allele isolates are ST-61. ST-61 isolates are found in RAPD groups II, IV, and in ungrouped isolates, which indicates genetic divergence Genetic divergence is the process of one species diverging over time into more than one species. Passing small random advantages characteristic changes over time from one generation to the next generations.  among H allele strains that is detected by RAPD but not by MLST. ST-61 differs from ST-67 by one allele, which confirms that SH-96-3696, the A allele strain found in RAPD II that has ST-67, is in the same clonal complex as the H allele serotype III strains. SH-96-3696 also has a 3,400-bp insert at AW- 10, and no insert at the other two sites, which provides further evidence that this isolate is related to H allele strains. The other two STs found in the H allele strains, ST-91 and ST-105, differ from ST-61 by two alleles. Thus, the H allele strains are clonally related.

III-3-specific Sequence Tags in H Allele Serotype III GBS

ST-61, the most common ST of the H allele strains, differs by two alleles from ST-17, the most common ST of III-3 strains. This two-allele difference in ST and the observation that isolates from these two lineages both have GBSi1 in the AW-10 site led us to search for other evidence that the two lineages are related.

We previously described 10 short sequence tags that are found in all III-3 strains but not in III-1 or III-2 strains (16). We therefore performed dot-blot hybridization hybridization /hy·brid·iza·tion/ (hi?brid-i-za´shun)
1. crossbreeding; the act or process of producing hybrids.

2. molecular hybridization

3.
 with eight of these probes on a selection of A, H, and C allele strains from this sample to determine the distribution of the III-3-specific sequences among these various lineages. As expected, all of the III-3-specific probes hybridized with every C allele strain tested, whereas the III-3 probes hybridized rarely or never with the A allele strains. In contrast, seven of the eight III-3 probes hybridized with almost all the H allele strains (Table 6).

Discussion

A key finding of this investigation is that the serotype III GBS strains isolated from bovine milk in this sample are largely genetically distinct from the serotype III GBS strains that commonly infect humans. The two most common lineages of serotype III GBS that colonize women and infect infants in the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area.  and Japan are restriction digest pattern types III-2 and III-3, whereas III-1 and III-4 strains are rarely isolated from the genitourinary genitourinary /gen·i·to·uri·nary/ (jen?i-to-u´ri-nar-e) pertaining to the genital and urinary organs.

gen·i·to·u·ri·nar·y
adj. Abbr.
 tract of women and are rarely associated with invasive disease (11,16).

Only one bovine strain that resembled RDP (Remote Desktop Protocol) The presentation services protocol that governs input/output between a Windows terminal client and Windows Terminal Server. It is based on the T.share protocol. See Windows Terminal Server.

(protocol) RDP -

1.
 type III-2 GBS was identified in the 67 isolates, and RAPD analysis indicates that this isolate is distinct from the 7 human III-2 strains in the sample. Thus, III-2 strains that infect humans are unlikely to infect bovine udders. Only two bovine strains were identified that had the genotypic characteristics of restriction digest pattern type III-3 strains. These two strains appear closely related to two human III-isolates by RAPD analysis, which makes it likely that III-3 strains can infect bovine udders, but they appear to do so infrequently.

We also found that the vast majority of bovine serotype III GBS in this sample belong to one of two major phylogenetic lineages. A separate study of bovine GBS isolates collected in the United Kingdom used MLST to identify two clonal complexes that are similar, if not identical, to the two lineages identified here; this finding suggests that two clones of GBS may predominate among bovine mastitis caused by GBS in North America North America, third largest continent (1990 est. pop. 365,000,000), c.9,400,000 sq mi (24,346,000 sq km), the northern of the two continents of the Western Hemisphere.  and England (21).

The data presented here show that the first bovine lineage is closely related to restriction digest pattern type III-1 GBS (Table 7). The lack of human III-I strains in this sample makes it difficult to use the RAPD analysis to determine how closely these III-1-like bovine strains resemble human III-1 strains. That no III-1 human isolates were found in this small sample is not surprising because human III-1 isolates rarely colonize the female genitourinary tract (although they occasionally cause neonatal infections) (9,17,18). Most III-1 bovine isolates in the sample studied here appear to lack the scpb-lmb locus, a finding consistent with that reported by Francken et al., who showed that absence of a putative composite transposon A composite transposon is similar in function to simple transposons and Insertion Sequence (IS) elements in that it has protein coding DNA segments flanked by inverted, repeated sequences that can be recognized by transposase enzymes.  that contains the scpB and lmb genes is a feature of bovine GBS (22). Possibly only a few of the III-1 bovine GBS are capable of infecting both humans and cows, since all human GBS appear to have the scpb-lmb locus.

The other major bovine serotype III GBS lineage in this sample is composed of strains that possess an infB H allele, with the exception of a single A allele strain that, on the basis of RAPD and MLST, appears closely related to the H allele strains. The H allele strains have STs that differ from each other by no more than two alleles, which indicates that these strains are likely to have a recent common ancestor.

We believe that strains in this lineage are unlikely to colonize or infect humans since we have not identified an infB H allele strain in >160 human serotype III GBS isolates, and since the STs of the bacteria in this lineage were not found in a large sample of human GBS obtained from diverse geographic areas (9). However, the major ST (ST-61) found in this lineage differs from the major ST of III-3 strains by only two alleles, which suggests that strains from this group may share a relatively recent common ancestor, H allele strains were found to contain previously identified III-3-specific sequence tags, which supports this hypothesis.

The identification of two III-3 strains of bovine origin and a third bovine strain (SH-96-4807) that is genetically distinct from III-3 strains but with the ST typical of III-3 strains (ST-17) supports the concept that III-3 strains share a recent common ancestor with H allele strains and retain some genetic traits necessary for bovine udder udder: see mammary gland.  colonization. No bovine III-2 strains were identified, but a single bovine strain (NI-96-2836) appears to be related to strains in the III-2 lineage by all molecular markers (although RAPD analysis found it to be clearly distinct from human III-2 isolates). These III-3 like and III-2-like bovine strains are both in RAPD group III (Table 3) and thus appear by RAPD analysis to be more related to each other than to other major bovine lineages or to human isolates. RAPD analysis also suggests that human III-3 strains are more related to human III-2 strains than to the H allele strains, despite the observation that MLST puts human III-3 strains at a greater phylogenetic distance from III-2 strains than from the H allele strains.

The clustering together of human III-2 and III-3 isolates by RAPD analysis, despite their clear distinction by MLST, leads us to hypothesize hy·poth·e·size  
v. hy·poth·e·sized, hy·poth·e·siz·ing, hy·poth·e·siz·es

v.tr.
To assert as a hypothesis.

v.intr.
To form a hypothesis.
 that common genetic determinants that account for host tropism Host tropism is the name given a process of tropism that determines which cells can become infected by any given pathogen. Various factors determine the ability of a pathogen to infect a particular cell.  (human versus bovine) have been acquired by both the III-2 and III-3 lineages and strongly influence the clustering of isolates, as shown by RAPD analysis. If so, the two bovine isolates that closely resemble III-3 and III-2 strains by MLST, but which resemble each other more closely by RAPD analysis, may represent intermediate genotypes between GBS lineages that have a more clear-cut tropism tropism (trōp`ĭzəm), involuntary response of an organism, or part of an organism, involving orientation toward (positive tropism) or away from (negative tropism) one or more external stimuli.  for either humans or bovines. The exact relationship between these human and bovine lineages, and genes important for host tropism, could be clarified by comparative genomics Comparative genomics is the study of relationships between the genomes of different species or strains. Comparative genomics is an attempt to take advantage of the information provided by the signatures of selection to understand the function and evolutionary processes that act on . Such studies, along with further studies of bovine GBS lineages of other serotypes, could also provide insight into the exact relationship between human and bovine strains and help determine whether these hosts act as reservoirs for each other's pathogenetic lineages and for the emergence of new pathogenic clones.
Table 1. Characteristics of human serotytpe III GBS lineages (a)

                               Inserted sequence sites (b)

                 infB
RDP type (c)   allele (d)     AW-10       hylB      scpb-lmb    ST (e)

III-1              A        No insert   No insert   No insert   23, 25
III-2              A        No insert    IS 1548     IS 1548    19, 21
III-3              C          GBSi1     No insert     GBSi1     17, 29
III-4              A        No insert   No insert     GBSi1       1

(a) GBS, group B streptococcus.

(b) The presence of inserted sequences is determined at the three
chromosomal locations (see Methods).

(c) RDP type refers to phylogenetic lineages originally defined by
analysis of restriction digest patterns of chromosomal DNA.

(d) infB is the highly conserved gene encoding initiation-translation
factor IF2.

(e) ST refers to the isolates' sequence type, based on the alleles of
seven housekeeping genes identified by multilocus sequence typing.

Table 2. Distribution of infB alleles in serotype III GBS from
different RAPID groups (a)

                                               infB allele

                  Species of   Isolates
RAPID group (b)     origin     studied     A   B   C   D    H

II                  Bovine        31       1   0   0   0   30
III                 Bovine        4        3   0   0   1    0
IV-A                Bovine        19      19   0   0   0    0
                    Human         1        1   0   0   0    0
IV-B                Bovine        2        0   0   0   0    2
IV-C                Bovine        4        2   0   2   0    0
                    Human         7        5   0   2   0    0
Ungrouped           Bovine        2        0   0   0   0    2
                    Total         70      31   0   4   1   34

(a) GBS, group B streptococcus.

(b) RAPD group identified by randomly amplified polymorphic DNA
analysis.

Table 3. Inserted sequences and sequence type (ST) of bovine strains
containing the infB A allele (a)

                                       Inserted sequence sites

RAPD group      Isolate      Origin     AW-10          hylB

II            SH-96-3696     Bovine   3,400 (b)        None
III           NI-96-2836     Bovine     None          IS 1548
              SH-96-4807     Bovine     None           None
              RF-96-2997     Bovine     None           None
IV-A             1003A       Human      None          IS 1548
              AL-97-0498     Bovine     None           None
              SH-96-3417
             All 17 others   Bovine     None           None
IV-C          NI-96-3213     Bovine     None           None
              ASS-96-666     Bovine     None           None
                 1007B       Human      None          IS 1548
             1009A, 15888    Human      None          IS 1548
             13228, 1009B    Human      None          IS 1548
                                                  (truncated) (f)

                                Inserted
                             sequence sites

RAPD group      Isolate        scpb-lmb          ST       RDP type

II            SH-96-3696          None           67      Unknown (c)
III           NI-96-2836        IS 1548          19      III-2-like
              SH-96-4807          None           17      III-3-like
              RF-96-2997          None           94         III-1
IV-A             1003A          IS 1548          19         III-2
              AL-97-0498          None           23         III-1
              SH-96-3417
             All 17 others   No product (d)   23,90,92   III-1-like
IV-C          NI-96-3213     No product (d)      23      III-1-like
              ASS-96-666     No product (d)      23      III-1-like
                 1007B         IS 1548/IS        86         III-2
                                1381 (e)
             1009A, 15888       IS 1548          19         III-2
             13228, 1009B       IS 1548          19         III-2

(a) RAPD, randomly amplified polymorphic DNA; RDP, restriction digest
pattern.

(b) A 3,400-bp insert is also found in other strains from randomly
amplified polymorphic DNA (RAPD) group II (see text and Table 5).

(c) This strain appears to be related to the H allele strains
described in Table 5.

(d) No polymerase chain reaction product was produced from these
strains in multiple attempts.

(e) In this strain, the insertion sequence IS 1381 is upstream from
IS 1548 in the scpb-lmb locus.

(f) S 1548 in the hylB locus is missing 657 bp from the 3' end of its
open reading frame in this strain.

Table 4. Analysis of inserted sequences of strains containing
the infB C allele (a)

                               Inserted sequence site

RAPID   Isolate      Origin   AW-10   hylB   scpb-lmb

IV-C    SF 96-5547   Bovine   GBSi1    700   GBSi1
        1004A        Human    GBSi1    700   IS 1548 (b)
        1000B        Human    GBSi1    700   GBSi1
        SF-96-4054   Bovine   GBSi1    700   GBSi1

RAPID   Isolate      ST   RDP type

IV-C    SF 96-5547   17   III-3
        1004A        17   III-3
        1000B        17   III-3
        SF-96-4054   17   III-3

(a) RAPID, randomly amplified polymorphic DNA; ST, sequence type; RDP,
restriction digest pattern.

(b) An insert highly homologous to IS 1548 but lacking by 603-1,301
was found in th is strain. IS 1548 has not previously been found in
this locus in III-3 strains.

Table 5. Inserted sequences and sequence types of infB H allele
strains (a)

                       Size of PCR poroduct from
                      inserted sequence sites (bp)

RAPD          Isolate       AW-10      hylB      scpb-lmb      ST

II          RF-96-2834    3,000 (b)   700 (c)    650 (d)     61
            ASS-97-0701   3,000       700        650         61
            AL-96-1653    1,700 (e)   700        650         61
            SF-96-6312    3,400 (f)   700        650         61 (g)
            SF-96-4396    1,700       700        650         91
            NI-96-2521    3,000       700        650         105
IV-B        ASS-96-659    3,000       700       No product   61 (g)
            SH-96-5461    1,700       700       No product   61
Ungrouped   AL-96-2049    3,000       700        650         61
            NI-96-3329    3,000       700        650         61

(a) RAPD, randomly amplified polymorphic DNA; ST, sequence type.

(b) A 3,000-bp amplicon was sequenced and found to contain an IS3like
insertion sequence interrupting GBSi1.

(c) A 700-bp product from the hylB site indicates that there is no
inserted sequence in the site.

(d) A 650-bp product from the scpb-lmb site indicates that there is no
inserted sequence in the site.

(e) A 1,700-bp product was amplified and found to contain an intact
copy of GBSi1.

(f) A 3,400-bp amplicon was sequenced and found to contain GBSi1 and
an IS 1563-like insertion sequence.

(g) The glcK (glucose kinase) gene in these two strains contains a
mobile genetic element in the portion of glcK used to determine the ST
of GBS strains. These two strains were found to be sequence type 61
(ST-61) after the inserted sequence was removed. The identical
inserted sequence in the glcK gene has been found in other ST-61
bovine strains and is described elsewhere (21).


This study was supported by the following grants: USPHS USPHS United States Public Health Service.

USPHS
abbr.
United States Public Health Service
 NIH "Not invented here." See digispeak.

NIH - The United States National Institutes of Health.
 RO1 AI 40918 (J.F.B., E.E.A.); Thrasher thrasher: see mimic thrush.
thrasher

Any of 17 species (family Mimidae) of New World songbirds that have a downcurved bill and are noted for noisily foraging on the ground in dense thickets and for loud, varied songs.
 Research Fund (J.F.B.); Cancer Center Support CORE Grant P30 CA 21765 (E.E.A.); and the American Lebanese Syrian Associated Charities The American Lebanese Syrian Associated Charities (ALSAC) has been the exclusive fund-raising organization of St. Jude Children's Research Hospital since 1957. ALSAC is the third largest healthcare related charity in the United States.  (E.E.A.).

References

(1.) Baker CJ. Group B streptococcal infections, in: Stevens DL, Kaplan EL, editorseds. Streptococcal infections Streptococcal Infections Definition

Streptococcal (strep) infections are communicable diseases that develop when bacteria normally found on the skin or in the intestines, mouth, nose, reproductive tract, or urinary tract invade other parts of the body
. Clinical aspects, microbiology, and molecular pathogenesis. New York New York, state, United States
New York, Middle Atlantic state of the United States. It is bordered by Vermont, Massachusetts, Connecticut, and the Atlantic Ocean (E), New Jersey and Pennsylvania (S), Lakes Erie and Ontario and the Canadian province of
: Oxford University Press; 2000. p. 222-37.

(2.) Schuchat A. Epidemiology of group B streptococcal disease in the United States: shifting paradigms. Clin Microbiol Rev. 1998; 11:497-513.

(3.) Henning KJ, Hall EL, Dwyer DM, Billmann L, Schuchat A, Johnson JA, et al. Invasive group B streptococcal disease in Maryland nursing home residents. J Infect Dis. 2001;183:1138-42.

(4.) Anthony BF, Okada DM. The emergence of group B streptococci Streptococcus (plural, streptococci)
A genus of spherical-shaped anaerobic bacteria occurring in pairs or chains. Sydenham's chorea is considered a complication of a streptococcal throat infection.
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(5.) Pattison IH, Matthews PRJ PRJ Peer Reviewed Journal
PRJ Project File
, Howell DG. The type classification of group-B streptococci, with special reference to bovine strains apparently lacking in type polysaccharide. J Pathol Bacteriol. 1955;69:51-60.

(6.) Finch LA, Martin DR. Human and bovine group B streptococci: two distinct populations. J Appl Bacteriol. 1984;57:273-8.

(7.) Martinez G, Harel J, Higgins R, Lacouture S, Daignault D, Gottschalk M. Characterization of Streptococcus agalactiae isolates of bovine and human origin by randomly amplified polymorphic DNA analysis DNA analysis Any technique used to analyze genes and DNA. See Chromosome walking, DNA fingerprinting, Footprinting, In situ hybridization, Jeffries' probe, Jumping libraries, PCR, RFLP analysis, Southern blot hybridization. . J Clin Microbiol. 2000;38:71-8.

(8.) Wibawan IW, Lammler C. Properties of group B streptococci with protein surface antigens X and R. J Clin Microbiol. 1990;28:2834-6.

(9.) Jones N, Bohnsack JF, Takahashi S, Oliver KA, Chart MS, Kunst F, et al. Multilocus sequence typing system for group B streptococcus. J Clin Microbiol. 2003;41:2530-6.

(10.) Musser JM, Mattingly SJ, Quentin R, Goudeau A, Selander RK. Identification of a high-virulence clone of type III Type III may stand for:
  • Glycogen storage disease type III, a genetic disorder
  • Hyperlipproteinemia type III, a risk factor for cardiovascular disease
  • The IBM Type-III Library, a distribution mechanism for unsupported IBM mainframe software such as CP/CMS
 Streptococcus agalactiae (group B Streptococcus) causing invasive neonatal disease. Proc Natl Acad Set U S A. 1989;86:4731-5.

(11.) Takahashi S, Derrick S, Whiting AA, Blaschke-Bonkowksy AJ, Aoyagi Y, Adderson EE, et al. Correlation of phylogenetic lineages of group B streptococci, identified by analysis of restriction-digestion patterns of genomic DNA, with infB alleles and mobile genetic elements Mobile genetic elements (MGE) are a type of DNA that can move around within the genome. They include:
  • Transposons
  • Retrotransposons
  • DNA transposons
. J Infect Dis. 2002;186:1034-8.

(12.) Rolland K, Marois C, Siquier V, Cattier B, Quentin R. Genetic features of Streplococcus agalactiae strains causing severe neonatal infections, as revealed by pulsed-field gel electrophoresis and hylB gene analysis. J Clin Microbiol. 1999;37:1892-8.

(13.) Hauge M, Jespersgaard C, Poulsen K, Kilian M. Population structure of Streptococcus agalactiae reveals an association between specific evolutionary lineages and putative virulence factors but not disease. Infect human. 1996;64:919-25.

(14.) Hedegaard J, Hauge M, Fage-Larsen J, Mortenson KK, Kilian M, Sperling-Petersen HU, et al. Investigation of the translation-initiation factor IF2 gene, infB, as a tool to study the population structure of Streptococcus agalactiae. Microbiology. 2000;146:1661-70.

(15.) Luan SL, Granlund M, Norgren M. An inserted DNA fragment with plasmid features is uniquely associated with the presence of the GBSil group II intron Group II intron is a class of intron found in rRNA, tRNA, mRNA of organelles in fungi, plants, protists, and mRNA in bacteria. Self-splicing occurs in vitro (for a few of the introns studied to date), but protein machinery is probably required in vivo.  in Streptococcus agalactiae. Gene. 2003;312:305-12.

(16.) Bohnsack JF, Takahashi S, Detrick SR, Pelinka LR, Hammitt LL, Aly AA, et al. Phylogenetic classification of serotype III group B streptococci on the basis of hylB gene analysis and DNA sequences specific to restriction digest pattern type III-3. J Infect Dis. 2001;183:1694-7.

(17.) Takahashi S, Adderson EE, Nagano Y, Nagano N, Briesacher MR, Bohnsack JF. Identification of a highly encapsulated, genetically related group of invasive type III GBS. J Infect. Dis. 1998; 177:1116-9.

(18.) Glaser P, Rusniok C, Buchrieser C, Chevalier F, Frangeul L, Msadek T, et al. Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol. 2002;45:1499-513.

(19.) Ferretti J, McShan W, Ajdic D, Savic D, Savic G, Lyon K, et al. Complete genome sequence of an M1 strain of Streptococcus pyogenes Streptococcus py·og·e·nes
n.
A bacterium that causes the formation of pus or of fatal septicemias.


Streptococcus pyogenes
A common bacterium that causes strep throat and can also cause tonsillitis.
. Proc Nag Acad Sci U S A. 2001;98:4658-63.

(20.) Tettelin H, Sounders NJ, Heidelberg J, Jeffries AC, Nelson KE, Eisen JA, et al. Complete genome sequence of Neisseria meningitidis Neisseria men·in·git·i·dis
n.
The bacteria that is the causative agent of cerebrospinal meningitis; meningococcus.


Neisseria meningitidis 
 serogroup B strain MC58. Science. 2000;287:1809-15.

(21.) Bisharat N, Crook DW, Leigh J, Harding RM, Ward PN, Coffey TJ, et al. Hyperinvasive neonatal group B streptococcus has arisen from a bovine ancestor. J Clin Microbiol. 20114;42:2161-7.

(22.) Franken C, Haasc G, Brandt C, Weber-Heynemann J, Martin S, Lammler C, et al. Horizontal gene transfer “HGT” redirects here. For other uses, see HGT (disambiguation).
Horizontal gene transfer (HGT), also Lateral gene transfer (LGT), is any process in which an organism transfers genetic material to another cell that is not its offspring.
 and host specificity of beta-haemolytic streptococci: the role of a putative composite transposon containing scpB and lmb. Mol Microbiol. 2001;41:925-35.

Dr. Bohnsack received research training at the University of Washington, in the National Institute for Allergy and Infectious Diseases infectious diseases: see communicable diseases.  Intramural intramural /in·tra·mu·ral/ (-mu´r'l) within the wall of an organ.

in·tra·mu·ral
adj.
Occurring or situated within the walls of a cavity or organ.
 Program at National Institutes of Health, Bethesda, Maryland Bethesda is an urbanized, but unincorporated, area in southern Montgomery County, Maryland, just Northwest of Washington, D.C. It takes its name from a church located there, the Bethesda Presbyterian Church, built in 1820 and rebuilt in 1850, which in turn took its name from , and at Scripps Research Institute. He began his studies of group B streptococcus shortly after joining the faculty of the University of Utah The University of Utah (also The U or the U of U or the UU), located in Salt Lake City, is the flagship public research university in the state of Utah, and one of 10 institutions that make up the Utah System of Higher Education.  in 1988.

Address for correspondence: John F, Bohnsack, Department of Pediatrics, University of Utah Health Sciences Center. 50 North Medical Drive, Salt Lake City. UT 84132, USA; fax: 801-585-9314; email: john.bohnsack@ hsc.utah.edu

John F. Bohnsack, * April A. Whiting, * Gabriela Martinez, ([dagger]) Nicola Jones, ([double dagger double dagger
n.
A reference mark () used in printing and writing. Also called diesis.

Noun 1.
]) Elisabeth E. Adderson, ([section]) Shauna Detrick, * Anne J. Blaschke-Bonkowsky, * Naiel Bisharat, ([double dagger]) and Marcelo Gottschalk ([dagger])

* University of Utah Health Sciences Center, Salt Lake City, Utah For ships of the United States Navy of the same name, see .
Salt Lake City is the capital and the most populous city of the U.S. state of Utah. The name of the city is often shortened to Salt Lake, or its initials, S.L.C.
, USA; ([dagger]) Faculte de Medicine Veterinaire, Universite de Montreal, Saint-Hyacinthe, Quebec This article is about the Quebec, Canada community. For the associated federal electoral district, see St. Hyacinthe (electoral district).

Saint-Hyacinthe (English pronunciation
, Canada; ([double dagger]) John Radcliffe Hospital The John Radcliffe Hospital is a large tertiary teaching hospital in Oxford, UK.

It is the main teaching hospital for Oxford University and Oxford Brookes University. As such, it is a well developed centre of medical research.
, Oxford, United Kingdom; and ([section]) St. Jude Children's Research Hospital St. Jude Children's Research Hospital, founded in 1962, is a leading pediatric treatment and research facility focused on children's catastrophic diseases. It is located in Memphis, Tennessee.

In 1996, Peter Doherty, Ph.D., of St.
, Memphis, Tennessee For the ancient Egyptian capital, see .

Memphis is a city in the southwest corner of Tennessee, and the county seat of Shelby County. Memphis rises above the Mississippi River on the 4th Chickasaw Bluff just below the mouth of the Wolf River.
, USA

(1) Presented in part at the XVth Lancefield International Symposium on Streptococci and Streptococcal Diseases, October 6-11, 2002, Goa, India.

The opinions expressed by authors contributing to this journal do not necessarily reflect the opinions of the Centers for Disease Control and Prevention Centers for Disease Control and Prevention (CDC), agency of the U.S. Public Health Service since 1973, with headquarters in Atlanta; it was established in 1946 as the Communicable Disease Center.  or the institutions with which the authors are affiliated.
COPYRIGHT 2004 U.S. National Center for Infectious Diseases
No portion of this article can be reproduced without the express written permission from the copyright holder.
Copyright 2004, Gale Group. All rights reserved. Gale Group is a Thomson Corporation Company.

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Author:Gottschalk, Marcelo
Publication:Emerging Infectious Diseases
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