Screening laboratory requests.To the Editor: In August 1999, the Laboratory Response Network (LRN LRN Linux.ru.net (website) LRN Laboratory Response Network LRN Location Routing Number LRN Local Routing Number LRN Learning Resource iNterchange (Microsoft) LRN Lead Round Nose ) was established to better integrate and improve laboratory capacity for responding to public health threats (1). However, while experts have focused on clinical indications for testing for agents of bioterrorism, laboratory methods for microbial microbial pertaining to or emanating from a microbe. microbial digestion the breakdown of organic material, especially feedstuffs, by microbial organisms. identification, and needs for integrated communication networks (2-4), little attention has been given to how sentinel laboratories can effectively screen clinicians' requests for testing pathogens designated as global health threats. In times of crisis, clinicians often pressure laboratorians to perform testing for patients whose probability for disease is very low or for nonvalidated sample types. In 2001, a few cases of anthrax triggered large numbers of nationwide requests to test nasal swabs for Bacillus anthracis Bacillus anthracis Infectious disease A gram-positive organism which causes often fatal infections when its endospores–resistant to heat, drying, UV light, gamma radiation, and many disinfectants–enter the body and cause septicemia Military medicine despite the absence of data to support this clinical practice outside epidemiologic investigations (5). Similarly, a false-positive result for severe acute respiratory syndrome Severe Acute Respiratory Syndrome (SARS) Definition Severe acute respiratory syndrome (SARS) is the first emergent and highly transmissible viral disease to appear during the twenty-first century. (SARS) in 2003 from the National Microbiology Laboratory The National Microbiology Laboratory (NML) is located in the Canadian Science Centre for Human and Animal Health in Winnipeg, Manitoba. This modern state-of-the-art facility houses the NML's Biological Safety Level 4 (BSL-4) containment laboratory, currently Canada's only BSL-4 in Canada created public alarm that SARS was reemerging, when the virus was actually that of a common respiratory illness in a nursing home (6). The problem is further complicated when laboratories other than the LRN lack standardization, have greater access to nucleic acid nucleic acid, any of a group of organic substances found in the chromosomes of living cells and viruses that play a central role in the storage and replication of hereditary information and in the expression of this information through protein synthesis. amplification-based testing, and develop tests for global health threats outside a quality-regulated system. False-positive results caused by contamination or cross-reactivity with a microorganism microorganism /mi·cro·or·gan·ism/ (-or´gah-nizm) a microscopic organism; those of medical interest include bacteria, fungi, and protozoa. of low virulence can disrupt a public health system, adversely affect patient care, and increase costs (6-8); false-negative results may prompt clinicians to discontinue containment procedures and potentially risk transmitting a virulent microorganism. At our sentinel laboratory, we recognized these challenges and took steps to promote judicious use of testing for agents designated as global health threats. We report use of an algorithm to evaluate test requests for SARS-associated coronavirus coronavirus /co·ro·na·vi·rus/ (ko-ro´nah-vi?rus) any virus belonging to the family Coronaviridae. Coronavirus /Co·ro·na·vi·rus/ (ko-ro´nah-vi?rus and highly pathogenic avian influenza H5N1; however, the algorithm can be used to screen testing requests for any pathogen that has potential to threaten public health. During outbreaks of SARS and H5N1, a laboratory protocol was established to notify the on-call laboratory professional when a sample was received for testing for 1 of these pathogens (Figure). The protocol required the laboratorian to communicate directly with the clinician, using a script with questions based on criteria established by the Centers for Disease Control and Prevention Centers for Disease Control and Prevention (CDC), agency of the U.S. Public Health Service since 1973, with headquarters in Atlanta; it was established in 1946 as the Communicable Disease Center. , to determine the medical necessity for testing (9,10). Samples from patients not meeting these criteria were rejected. Testing for SARS used an in-house real-time PCR PCR polymerase chain reaction. PCR abbr. polymerase chain reaction Polymerase chain reaction (PCR) assay with a standard laboratory protocol. Samples accepted for H5N1 testing were screened by a nonspecific nonspecific /non·spe·cif·ic/ (non?spi-sif´ik) 1. not due to any single known cause. 2. not directed against a particular agent, but rather having a general effect. nonspecific 1. hemagglutinin hemagglutinin /he·mag·glu·ti·nin/ (-gloo´ti-nin) an antibody that causes agglutination of erythrocytes. cold hemagglutinin one which acts only at temperatures near 4° C. influenza PCR assay and, if results were positive, were to be forwarded to an LRN laboratory. Positive results were to be reported to be spoken of; to be mentioned, whether favorably or unfavorably. See also: Report only after confirmation by an LRN laboratory. Laboratory professionals were specifically trained about the sensitivity, specificity, positive predictive value Positive predictive value (PPV) The probability that a person with a positive test result has, or will get, the disease. Mentioned in: Genetic Testing positive predictive value , and negative predictive value The negative predictive value is the proportion of patients with negative test results who are correctly diagnosed. Worked example
Condition (as determined by "Gold standard") True False of test methods in relation to sample type, time between symptom onset and specimen collection, and disease prevalence. [FIGURE OMITTED] Of 41 samples (40 SARS and 1 H5N1) received for testing, 26 (63%) samples were not tested because clinician responses failed to satisfy the screening criteria. The remaining 15 (37%) samples met criteria for testing and all had negative results. In the absence of positive results, no confirmatory testing was indicated. Although SARS no longer poses a credible threat and human-to-human transmission of H5N1 has not been well delineated, our experiences with these 2 pathogens demonstrate how a sentinel laboratory can effectively intervene in the initial phases of a public health threat. We found that having a laboratory professional contact the clinician and systematically ask the scripted questions was a pragmatic tool for the first phase of response and resulted in cancellation of most tests. We acknowledge that optimal validation of this algorithm would require randomly selecting and testing rejected specimens during a phase of high disease prevalence. Although low disease prevalence during our study period precluded validation testing, we recommend that such testing be performed. Our systematic approach to screening requests to test for agents with the potential to threaten global health can prevent arbitrary decision making, reduce inappropriate testing, and increase the value of laboratory consultation. The principles guiding our testing protocols for SARS and avian influenza can be generalized to future global health threats. Responsible and judicious use of diagnostic testing will be crucial for minimizing the risk of providing clinicians with misleading results that could severely disrupt the public health system and lead to an unnecessary expenditure of limited resources. With the emergence of highly pathogenic avian influenza, we anticipate further demands on laboratory and public health resources that will necessitate effective, pragmatic tools to enhance the value of laboratorian-clinician consultation before tests are performed on site or referred to an LRN laboratory. References (1.) Centers for Disease Control and Prevention. The laboratory response network partners in preparedness [cited 2006 Jun 8]. Available at http://www.bt.cdc. gov/lrn (2.) Pien BC, Saah JR, Miller SE, Woods CW. Use of sentinel laboratories by clinicians to evaluate potential bioterrorism and emerging infections. Clin Infect Dis. 2006;42: 1311-24. (3.) Klietmann WF, Ruoff KL. Bioterrorism: implications for the clinical microbiologist. Clin Microbiol Rev. 2001;14:364-81. (4.) Snyder JW. Role of the hospital-based microbiology laboratory in preparation for and response to a bioterrorism event. J Clin Microbiol. 2003;41:1-4. (5.) Kiratisin P, Fukuda CD, Wong A, Stock F, Preuss JC, Ediger L, et al. Large-scale screening of nasal swabs for Bacillus anthracis: descriptive summary and discussion of the National Institutes of Health's experience. J Clin Microbiol. 2002;40: 3012-6. (6.) Enserink M. Infectious diseases. Unexplained false alarm may hold lessons. Science. 2003;302:767. (7.) Enserink M, Normile D. Infectious diseases. Search for SARS origin stalls. Science. 2003;302:766-7. (8.) Yu AC. The difficulties of testing for SARS. Science. 2004;303:469-71. (9.) Centers for Disease Control and Prevention. Updated interim guidance for laboratory testing of persons with suspected infection with avian influenza A (H5N1) virus in the United States [cited 2006 Sep 19]. Available from http://www2a.edc.gov/ han/ArchiveSys/ViewMsgV.asp?AlertNum =00246 (10.) Centers for Disease Control and Prevention. Clinical guidance on the identification and evaluation of possible SARS-CoV disease among persons presenting with community-acquired illness [cited 2006 Jun 12]. Available from http://www. cdc.gov/ncidod/sars/clinicalguidance.htm Cathy A. Petti pet·ti n. pl. pet·tis 1. A woman's petticoat. 2. A pettislip. , * ([dagger]) Christopher R. Polage, * and David R. Hillyard * ([dagger]) * University of Utah The University of Utah (also The U or the U of U or the UU), located in Salt Lake City, is the flagship public research university in the state of Utah, and one of 10 institutions that make up the Utah System of Higher Education. School of Medicine, Salt Lake City, Utah For ships of the United States Navy of the same name, see . Salt Lake City is the capital and the most populous city of the U.S. state of Utah. The name of the city is often shortened to Salt Lake, or its initials, S.L.C. , USA; and ([dagger]) Associated Regional and University Pathologists Laboratories, Salt Lake City, Utah, USA Address for correspondence: Cathy A. Petti, University of Utah School of Medicine, 50 N Medical Dr, Salt Lake City, UT 84132, USA; email: cathy.petti@aruplab.com |
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