Scaled quantum mechanical force fields for trifluoromethyl selenium derivatives. II. The [(C[F.sub.3]).sub.2] Se and [(C[F.sub.3]Se).sub.2] molecules.Introduction Theoretical studies on the vibrational properties of the selenium selenium (səlē`nēəm), nonmetallic chemical element; symbol Se; at. no. 34; at. wt. 78.96; m.p. 217°C;; b.p. about 685°C;; sp. gr. 4.81 at 20°C;; valence −2, +4, or +6. compounds, C[F.sub.3]SeX (X = H, D, Cl, or Br) and two simple C[F.sub.3]Se derivatives derivatives In finance, contracts whose value is derived from another asset, which can include stocks, bonds, currencies, interest rates, commodities, and related indexes. Purchasers of derivatives are essentially wagering on the future performance of that asset. , i.e., C[F.sub.3]SeCN and C[F.sub.3]SeC[H.sub.3], were recently performed in our laboratory. 1,2 Now, we turn our attention to the vibrational studies of other two selenium compounds, i.e., [(C[F.sub.3]).sub.2]Se and [(C[F.sub.3]Se).sub.2]. These molecules were prepared by Dale, Emeleus, and Haszeldine (3) and by Emeleus and Dunn Dunn may refer to: Places
As a surname, Marsden may refer to:
The phenomenon associated with interference processes that occur when electrons are scattered by atoms to form diffraction patterns. techniques. (5,6) The vibrational spectra and assignments were reported for these two molecules by Marsden (7) and Clase et al. (8) In the present work, the vibrational characteristics of the above-mentioned molecules were calculated using the methods of quantum chemistry
Quantum chemistry is a branch of theoretical chemistry, which applies quantum mechanics and quantum field theory to address issues and problems in chemistry. to check the published normal mode frequencies and their assignments and to obtain the corresponding force constants, which were scaled to reproduce re·pro·duce v. 1. To produce a counterpart, an image, or a copy of something. 2. To bring something to mind again. 3. To generate offspring by sexual or asexual means. the experimental frequencies. Such adjustment was made using the formalism Formalism or Russian Formalism Russian school of literary criticism that flourished from 1914 to 1928. Making use of the linguistic theories of Ferdinand de Saussure, Formalists were concerned with what technical devices make a literary text literary, apart of the scaled quantum mechanical (SQM SQM Square Meters SQM Software Quality Management SQM Sky Quality Meter SQM Service Quality Management SQM Signal Quality Monitoring SQM Stable Queue Manager SQM Surface Quality Monitor SQM Supplier Quality Manual SQM Signal Quality Monitor ) force field, as defined by Pulay et al. (9) Calculation procedure Optimized structures, force constants, and vibrational frequencies for the [(C[F.sub.3]).sub.2]Se and [([CF.sub.3]Se).sub.2] molecules were obtained with density functional theory Density functional theory (DFT) is a quantum mechanical theory used in physics and chemistry to investigate the ground state of many-body systems, in particular atoms, molecules and the condensed phases. (DFT DFT - discrete Fourier transform ) methods using the B3LYP LYP Local Yellow Pages (directory advertising) functional (10,11) together with the 6-311G* basis set. These theoretical data allowed a good reproduction of the experimental frequencies and facilitated the comparison of the results with those obtained in previous studies (1,2) in which the same combination of functional and basis set was used. All calculations were made for the isolated molecules using the Gaussian 03 set of programs. (12) The harmonic harmonic. 1 Physical term describing the vibration in segments of a sound-producing body (see sound). A string vibrates simultaneously in its whole length and in segments of halves, thirds, fourths, etc. force field in Cartesian coordinates Cartesian coordinates (kärtē`zhən) [for René Descartes], system for representing the relative positions of points in a plane or in space. given by the theoretical calculation was transformed to natural (local symmetry In physics, a symmetry describes a quality of a physical system that is independent upon modifying variables that describe that system (one says that the theory is invariant under such transformations). ) coordinates (13) through the corresponding B matrix, (14) calculated with a standard program. The resulting force field was subsequently scaled using the scheme of Pulay et al., (9) in which the diagonal force constants are multiplied by scale factors [f.sub.i], [f.sub.j], and so forth, and the corresponding interaction constants are multiplied by [([f.sub.i] [f.sub.j]).sup.1/2], adjusting the scaled factors by a least-squares procedure to reproduce as well as possible the experimental frequencies. No anharmonicity Anharmonicity is the deviation of a system from being a harmonic oscillator [1]. An oscillator that is not oscillating in simple harmonic motion is known as an anharmonic oscillator where the system can be approximated to a harmonic oscillator and the anharmonicity can be corrections of these frequencies were made because of the lack of the necessary experimental data. The potential-energy distribution (PED n. 1. A basket; a hammer; a pannier. ), which gives the participation of each defined coordinate to each normal mode of vibration Mode of vibration A characteristic manner in which vibration occurs. In a freely vibrating system, oscillation is restricted to certain characteristic frequencies; these motions are called normal modes of vibration. , was calculated with the resulting SQM force field. The force field transformation, scaling, and PED calculation were performed with the program FCARTP. (15) Structural results The molecular conformations of [(C[F.sub.3]).sub.2]Se were investigated starting with an initial, staggered structure having FCSeC dihedral di·he·dral adj. Mathematics 1. Formed by or having two plane faces; two-sided. 2. Relating to, having, or forming a dihedral angle. n. 1. Mathematics a. A dihedral angle. angles of 180[degrees] ([C.sub.2v] symmetry symmetry, generally speaking, a balance or correspondence between various parts of an object; the term symmetry is used both in the arts and in the sciences. ). The C[F.sub.3] groups were both rotated rotated turned around; pivoted. rotated tibia see rotated tibia. around the Se-C bonds in opposite directions, so that the [C.sub.2] symmetry was preserved. The twist angles were varied from 0[degrees] to 60[degrees], in steps of 5[degrees], and the structure was optimized with that dihedral angle frozen. These calculations showed that only a single conformer exists for this molecule for a twist angle of ~5[degrees]. This structure was fully optimized at the B3LYP/6-311G * level to obtain the real position of the minimum, which was located for a twist angle of 6[degrees] and FCSeC dihedral angles of 174[degrees]. The starting [C.sub.2v] conformation con·for·ma·tion n. One of the spatial arrangements of atoms in a molecule that can come about through free rotation of the atoms about a single chemical bond. turned out to be a transition state characterized char·ac·ter·ize tr.v. character·ized, character·iz·ing, character·iz·es 1. To describe the qualities or peculiarities of: characterized the warden as ruthless. 2. by an imaginary Imaginary can refer to:
A similar analysis was performed for the [(C[F.sub.3]Se).sub.2] molecule starting with an initial structure in which the C[F.sub.3] groups are in an exactly staggered position in relation to the Se-Se bond. This conformation has CSeSeC and FCSeSe dihedral angles of 91[degrees] and 180[degrees], respectively. The C[F.sub.3] groups were rotated simultaneously in steps of 5[degrees], preserving always the [C.sub.2] symmetry and the mentioned CSeSeC angle. A single minimum in the potential energy curve was found, corresponding to the conformation in which the twist angle was equal to 10[degrees] for both C[F.sub.3] groups. Subsequently, this structure was fully optimized to a dihedral angle of 9.2[degrees]. On the other hand, the potential energy curve was also explored varying the CSeSeC dihedral angle in steps of 5[degrees]. These calculations confirmed the existence of only one minimum in the potential energy surface for this molecule. The optimized molecular structure for [(C[F.sub.3]Se).sub.2] agrees with the electron diffraction study. (6) [FIGURE 1 OMITTED] The structures of the most stable conformations predicted for [(C[F.sub.3]).sub.2]Se and [(C[F.sub.3]Se).sub.2] molecules are shown in Fig. 1. The corresponding calculated geometric parameters and experimental values appear in Table 2. The (mean) calculated and experimental distances and angles do not differ in more than 0.045 [Angstrom angstrom (ăng`strəm), abbr. Å, unit of length equal to 10−10 meter (0.0000000001 meter); it is used to measure the wavelengths of visible light and of other forms of electromagnetic radiation, such as ultraviolet ] (for the Se-Se distance) and 6.5[degrees] (for the CSeSeC dihedral angle), respectively. The theoretical tilt angles, existing between the C-Se bonds and the ideal symmetry axis of the the diameter of the sphere which is perpendicular to the plane of the circle. See also: Axis C[F.sub.3] group, also appear in Table 2; this angle was calculated for the C[F.sub.3] groups as l/3[2[alpha]([F.sub.3,4]CSe)-2[alpha] ([F.sub.2]CSe)]. (16) Vibrational results Marsden (7) and Clase et al. (8) have reported and assigned as·sign tr.v. as·signed, as·sign·ing, as·signs 1. To set apart for a particular purpose; designate: assigned a day for the inspection. 2. the vibrational spectra of the two molecules studied. Clase et al checked Marsden's assignments and performed some changes, particularly in the C[F.sub.3] stretching region. A revision of the published assignments for both molecules was made by comparison between the existing experimental data and our theoretical results. The computed atomic displacement displacement, in psychology: see defense mechanism. Same as offset. See base/displacement. vectors for each vibrational mode served to understand qualitatively the nature of the molecular vibrations and were used also for such revision. This analysis showed that the assignments proposed by Clase et al. were correct. The bands observed in the IR spectra of [(C[F.sub.3]).sub.2]Se at 1142 and 1065 [cm.sup.-1] correspond to the C[F.sub.3] symmetric No difference in opposing modes. It typically refers to speed. For example, in symmetric operations, it takes the same time to compress and encrypt data as it does to decompress and decrypt it. Contrast with asymmetric. (mathematics) symmetric - 1. stretching modes ([v.sub.3] and [v.sub.14], respectively), whereas the bands at 1152, 1193, and 1200 [cm.sup.-1] are assigned to the C[F.sub.3] antisymmetric (mathematics) antisymmetric - A relation R is antisymmetric if, for all x and y, x R y and y R x => x == y. I.e. no two different elements are mutually related. Partial orders and total orders are antisymmetric. If R is also symmetric, i.e. stretching modes ([v.sub.13], [v.sub.12], and [v.sub.1], respectively). The calculated band at 1162 [cm.sup.-1], which seems to be too weak to appear in the experimental spectra, is attributed to the C[F.sub.3] antisymmetric stretching mode ([v.sub.2]), unless it corresponds to the very weak band at 1178 [cm.sup.-1] only reported by Clase et al. Concerning the [(C[F.sub.3]Se).sub.2] molecule, the IR band at 1188 [cm.sup.-1] corresponds to the C[F.sub.3] antisymmetric stretching modes ([v.sub.1] and [v.sub.2], respectively), whereas the band located at 1144 [cm.sup.-1] seems to be spurious spu·ri·ous adj. Similar in appearance or symptoms but unrelated in morphology or pathology; false. spurious simulated; not genuine; false. , since our theoretical calculations did not predict bands near that frequency. The assignments adopted in this work for the [(C[F.sub.3]Se).sub.2]Se molecule are based on the [C.sub.2] symmetry, assuming local [C.sub.3v], symmetry for the C[F.sub.3]Se group. That agrees with Marsden's proposition and the present theoretical results, whereas Clase et al. assumed a [C.sub.2v] symmetry for this molecule. The normal vibrational modes of the studied molecules are classified as 11A + 10B for [(C[F.sub.3]Se).sub.2]Se and 13A + 11B for [(C[F.sub.3]Se).sub.2], respectively, in accordance Accordance is Bible Study Software for Macintosh developed by OakTree Software, Inc.[] As well as a standalone program, it is the base software packaged by Zondervan in their Bible Study suites for Macintosh. with their [C.sub.2] symmetry. There is a fair agreement between the simulated spectra and the experimental data (8) for both molecules. The calculated frequencies and IR and Raman Ra·man , Sir Chandrasekhara Venkata 1888-1970. Indian physicist. He won a 1930 Nobel Prize for his discovery of the Raman effect. intensities as well as the corresponding experimental values are shown in Tables 3 and 4. The agreement between measured and calculated frequencies was evaluated by means of the root-mean-square deviation (RMSD), which was equal to 12 [cm.sup.-1] for [(C[F.sub.3]Se).sub.2]Se and 13 [cm.sup.-1] for [(C[F.sub.3]Se).sub.2]. After the force-field scaling procedure, these values fell to 5 and 7 [cm.sup.-1], respectively. Force constants The harmonic force fields in Cartesian coordinates, as generated by the Gaussian programs for the two molecules, were transformed to the set of coordinates defined in Tables 5 and 6. Such coordinates consider the local symmetry of the C[F.sub.3] groups and follow the proposals of Fogarasi et a1. (13) The resulting force constants were subsequently scaled according to according to prep. 1. As stated or indicated by; on the authority of: according to historians. 2. In keeping with: according to instructions. 3. the methodology proposed by Pulay et a1., (9) as mentioned before (in the Calculation procedure Section), to reproduce as well as possible the experimental frequencies. The final scaling factors, corresponding to each force constant for the studied molecules, appear in Table 7. It can be seen that most of these factors are greater than one; this is the case when heavy atoms (after the second row of the Periodic Table) appear in the molecule. This fact has been reported for many molecules containing nonmetallic non·me·tal·lic adj. 1. Not metallic. 2. Chemistry Of, relating to, or being a nonmetal. Adj. 1. heavy atoms (17) as well as for several C[F.sub.3]S[O.sub.2]X molecules (18) and C[F.sub.3]SeX species. (1,2) The scaling factors previously obtained for common coordinates of other selenium compounds (1,2) were similar to those calculated for [(C[F.sub.3]).sub.2]Se and [(C[F.sub.3]Se).sub.2] molecules in this work. The resulting SQM force-constant matrices are available as Supplementary data for this work. The internal force constants for the two molecules, appearing in Table 8, were also calculated from the corresponding SQM force fields. These force constants are compared with the values previously obtained for other selenium derivates using the same calculation procedure. (2) The SQM force fields were used to calculate the potential energy distribution (PED) for each molecule. These values appear in Tables 3 and 4, and show that the coordinates corresponding to v C[F.sub.3] sYMM, [delta] C[F.sub.3] symm., and v C-Se are strongly mixed, as expected and observed also for other C[F.sub.3]SeX molecules. (1,2) Supplementary data Supplementary data for this article are available on the journal Web site (canjchem.nrc.ca) or may be purchased from the Depository The place where a deposit is placed and kept, e.g., a bank, savings and loan institution, credit union, or trust company. A place where something is deposited or stored as for safekeeping or convenience, e.g., a safety deposit box. of Unpublished Data, Document Delivery, CISTI CISTI Canada Institute for Scientific and Technical Information CISTI Civil Space Technology Initiative CISTI Canadian Institute of Telecommunications Engineers , National Research Council Canada Canada (kăn`ədə), independent nation (2001 pop. 30,007,094), 3,851,787 sq mi (9,976,128 sq km), N North America. Canada occupies all of North America N of the United States (and E of Alaska) except for Greenland and the French islands of , Ottawa Ottawa, city, Canada Ottawa (ŏt`əwə), city (1991 pop. 313,987), capital of Canada, SE Ont., at the confluence of the Ottawa and Rideau rivers. Hull, Que. , ON K1A 0R6, Canada. DUD 3874. For more information on obtaining material, refer to cisti-icist.nrc-cnrc.gc.ca/cms/ unpub_e.shtml. Acknowledgements Research grants from the following institutions from R. Argentina Argentina (ärjəntē`nə, Span. ärhāntē`nä), officially Argentine Republic, republic (2005 est. pop. 39,538,000), 1,072,157 sq mi (2,776,889 sq km), S South America. are gratefully acknowledged: CONICET CONICET Consejo Nacional de Investigaciones Científicas Y Técnicas (National Council for Science and Technology, Argentina) (Consejo Consejo is a village in the north of Corozal District of the nation of Belize. Consejo is located on a point of land where the bays of Corozal and Chetumal meet. Consejo is about 8 miles from the district capital of Corozal Town, and two miles, across the water, from Nacional Nacional is the Spanish and Portuguese word for national. It can refer to: Sports
UNLP United Nations License Plate (Universidad Nacional de La Plata La Plata (lä plä`tä), city (1991 pop. 640,344), capital of Buenos Aires prov., E central Argentina, 5 mi (8.1 km) inland from Ensenada, its port on the Río de la Plata. ), and CIUNT CIUNT Consejo de Investigaciones de la Universidad Nacional de Tucumán (Spanish) (Consejo de Investigaciones de la Universidad Nacional de Tucuman). We also thank Dr. G. Arteca, Laurentian University Laurentian University, main campus at Sudbury, Ont., Canada; bilingual, coeducational; founded 1960. Among its faculties are those in astronomy, commerce, computer science, education, engineering, law, mathematics, music, native studies, nursing, physics, and social , Canada, for providing access to some published articles. References (1) Fernandez, L. E.; Varetti, E. L. J. Mol. Struct. (Theochem.) 2006, 761, 217. doi:10.1016/j.theochem.2005.12.016. (2) Fernandez, L. E.; Varetti, E. L. Can. J. Chem. 2006, 84, 1626. doi:10.1139/V06-171. (3) Dale, J. W.; Emeleus, H. J.; Haszeldine, R. N. J. Chem. Soc. 1958, 2939. doi:10.1039/jr9580002939. (4) Emeleus, H. J.; Dunn, M. J. J. Inorg. Nucl. Chem. 1965, 27, 752. doi:10.1016/0022-1902(65)80289-5. (5) Marsden, C. J.; Sheldrick, G. M. J. Mol. Struct. 1971, 10, 405. doi:10.1016/0022-2860(71)85063-9. (6) Marsden, C. J.; Sheldrick, G. M. J. Mol. Struct. 1971, 10, 419. doi:10.1016/0022-2860(71)85065-2. (7) Marsden, C. J. J. Fluor. Chem. 1975, 5, 401. doi:10.1016/ 50022-1139(00)82499-9. (8) Clase, H. J.; Wahi, P. K.; Bomford, D. R. L. Can. J. Spectros. 1977, 22, 92. (9) Pulay, P.; Fogarasi, G.; Pongor, G.; Boggs, J. E.; Vargha, A. J. Am. Chem. Soc. 1983, 105, 7037. doi:10.1021/ ja00362a005. (10) Becke, A. D. J. Chem. Phys. 1993, 98, 5648. doi:10.1063/1. 464913. (11) Lee, C.; Yang yang (yang) [Chinese] in Chinese philosophy, the active, positive, masculine principle that is complementary to yin; see yin, under principle. , W.; Parr, R. G. Phys. Rev. 1988, B37, 785. (12) Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A., Jr.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda honda a quick release metal eyelet for the end of a lariat. When the restrained animal is no longer required it is not necessary to slacken off the loop and pull it over the head—a very great advantage when working with wild cattle or unbroken horses. , Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, L; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill gill, in weights and measures gill, in weights and measures: see English units of measurement. , P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. GAUSSIAN 03 [computer program]; Gaussian, Inc.: Pittsburgh, Penn., USA, 2003. (13) Fogarasi, G.; Zhou, X.; Taylor, P. W.; Pulay, P. J. Am. Chem. Soc. 1992, 114, 8191. doi:10.1021/ja00047a032. (14) Wilson, E. B.; Decius, J. C.; Cross, P. C. Molecular vibrations; MacGraw-Hill: New York New York, state, United States New York, Middle Atlantic state of the United States. It is bordered by Vermont, Massachusetts, Connecticut, and the Atlantic Ocean (E), New Jersey and Pennsylvania (S), Lakes Erie and Ontario and the Canadian province of , USA, 1955. (15) Collier, W. B. Program FCARTP (QCPE QCPE Quantum Chemistry Program Exchange (University of Indiana) #631). Department of Chemistry. Oral Roberts University, Tulsa, OK. 1992. (16) Francisco, J. S. Spectrochim. Acta [A], 1984, 40, 923. (17) Kalincsak, F.; Pongor, G. Spectrochim. Acta [A], 2002, 58, 999. doi:10.1016/S1386-1425(01)00572-8. (18) Fernandez, L. E.; Ben Altabef, A.; Varetti, E. L. J. Mol. Struct. 2002, 612, 1. doi:10.1016/S0022-2860(01)00940-1. Received 24 July 2008. Accepted 29 October 2008. Published on the NRC Research Press Web site at canjchem.nrc.ca on 27 February 2009. L.E. Fernandez. Instituto de Quimica Fisica, Facultad de Bioquimica, Quimica y Farmacia, Universidad Nacional de Tucuman, San Lorenzo San Lorenzo, town, S Honduras, on the Gulf of Fonseca. Its satellite, Henecán is the chief Pacific port of Honduras. Henecán's modern port facilities and deepwater harbor and channel approach were constructed in the late 1970s after the old port at 456, 4000 S.M. de Tucuman, Republica Argentina. E.L. Varetti. [1] Centro de Quimica Inorganica (CEQUINOR, CONICET-UNLP), Departamento de Quimica, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, C.Correo 962, 1900 La Plata, Republica Argentina. [1] Corresponding author (e-mail: varettiC&quimica.unlp.edu.ar).
Table 1. Calculated energy of the conformations with [C.sub.2] and
[C.sub.2v] symmetries of the [(C[F.sub.3]).sub.2]Se molecule at
different level of theory.
[C.sub.2] [C.sub.2v]
Method conformation conformation
[DELTA]E
E (Hartree) E (Hartree) (kJ [mol.sub.-1])
B3LYP
6-31G * -3074.617261 -3074.617220 0.109
6-311G * -3076.993702 -3076.993676 0.067
6-311+G * -3077.016765 -3077.016745 0.054
B3PW91
6-31G * -3074.356303 -3074.356261 0.109
6-311G * -3076.723494 -3076.723470 0.063
6-311+G * -3076.742751 -3076.742728 0.058
Table 2. Optimized and experimental geometric parameters for
the molecules [(C[F.sub.3]).sub.2]Se and [(C[F.sub.3]).sub.2].
[(C[F.sub.3]).sub.2]Se
Calculated Experimental (5)
Bonds lengths ([Angstrom])
C-F (a) 1.338 1.332
C-Se 1.986 1.980
Se-Se -- --
Bond angles ([degrees])
F-C-F (a) 108.3 108.9
F-C-Se (a) 110.6 --
C-Se-Se -- --
C-Se-C 96.4 94.1
Dihedral angles ([degrees])
F-C-Se-C 174.0 --
C-Se-Se-C -- --
F-C-Se-Se -- --
Twist angle 6.0 4.2
Tilt angle 4.1 2.0 (fixed)
[(C[F.sub.3]).sub.2]
Calculated Experimental (6)
Bonds lengths ([Angstrom])
C-F (a) 1.338 1.326
C-Se 2.000 2.018
Se-Se 2.337 2.292
Bond angles ([degrees])
F-C-F (a) 108.3 109.9
F-C-Se (a) 110.6 109.1
C-Se-Se 99.8 98.0
C-Se-C -- --
Dihedral angles ([degrees])
F-C-Se-C -- --
C-Se-Se-C 91.0 84.5
F-C-Se-Se 175.4 -
Twist angle 9.2 11.8
Tilt angle 4.3 --
(a) Mean of the calculated values.
Table 3. Experimental and calculated frequencies, IR and Raman
intensities, and potential energy distribution (PED) for
[(C[F.sub.3]).sub.2]Se.
Calculated
Mode Experimental (a) Calculated (b) SQM (c)
A
[v.sub.1] 1200 vs 1202 1210
[v.sub.2] ? 1162 1166
[v.sub.3] 1142 vs (vw) 1126 1138
[v.sub.4] 749 (vs) * 743 751
[v.sub.5] 553 (vvw) * 551 554
[v.sub.6] 538 532 534
[v.sub.7] 363 s (m) 358 364
[v.sub.8] 278 vw (vs) 268 275
[v.sub.9] 267 (vw) * 259 252
[v.sub.10] 109 (w) * 96 100
[v.sub.11] ? 25 25
B
[v.sub.12] 1193 vs 1188 1192
[v.sub.13] 1152 vs 1148 1153
[v.sub.14] 1065 vs (vw) 1050 1060
[v.sub.15] 746 s 738 747
[v.sub.16] 535 w (w) 531 533
[v.sub.17] 535 w (w) 527 529
[v.sub.18] 340 m (w) 323 339
[v.sub.19] 258 (w) * 294 286
[v.sub.20] 253 vw 252 245
[v.sub.21] ? 49 48
RMSD 12 5
([cm.sup.-1])
Raman intensity
IR intensity ([Angstrom].sup.4]
Mode (km [mol.sup.-1]) [amu.sup.-1])
A
[v.sub.1] 432.53 0.79
[v.sub.2] 0.36 0.08
[v.sub.3] 143.00 1.63
[v.sub.4] 11.38 8.35
[v.sub.5] 0.17 1.69
[v.sub.6] 0.00 0.24
[v.sub.7] 4.57 4.50
[v.sub.8] 0.01 5.94
[v.sub.9] 0.00 1.51
[v.sub.10] 0.71 0.30
[v.sub.11] 0.00 0.05
B
[v.sub.12] 512.57 1.35
[v.sub.13] 246.39 0.65
[v.sub.14] 598.80 3.25
[v.sub.15] 43.77 0.14
[v.sub.16] 0.62 0.69
[v.sub.17] 2.30 1.64
[v.sub.18] 0.56 3.47
[v.sub.19] 0.03 0.87
[v.sub.20] 0.42 0.90
[v.sub.21] 0.10 0.07
RMSD
([cm.sup.-1])
Mode PED (contributions [greater than or equal to] 10%)
A
[v.sub.1] 90 [S.sub.1] + 17 [S.sub.5]
[v.sub.2] 101 [S.sub.2] + 18 [S.sub.6]
[v.sub.3] 64 [S.sub.3] + 46 [S.sub.4] + 21 [S.sub.7]
[v.sub.4] 42 [S.sub.4] + 37 [S.sub.3] + 12 [S.sub.7]
[v.sub.5] 65 [S.sub.5]
[v.sub.6] 74 [S.sub.6]
[v.sub.7] 32 [S.sub.7] + 30 [S.sub.8] + 13 [S.sub.5] +
10 [S.sub.10]
[v.sub.8] 39 [S.sub.8] + 41 [S.sub.7]
[v.sub.9] 99 [S.sub.9] + 12 [S.sub.6]
[v.sub.10] 86 [S.sub.10] + 36 [S.sub.8]
[v.sub.11] 107 [S.sub.11]
B
[v.sub.12] 101 [S.sub.12] + 17 [S.sub.17]
[v.sub.13] 104 [S.sub.13] + 19 [S.sub.16]
[v.sub.14] 81 [S.sub.14] + 50 [S.sub.15] + 24 [S.sub.18]
[v.sub.15] 47 [S.sub.15] + 28 [S.sub.14] + 15 [S.sub.18]
[v.sub.16] 78 [S.sub.16]
[v.sub.17] 74 [S.sub.17]
[v.sub.18] 68 [S.sub.18] + 15 [S.sub.15]
[v.sub.19] 96 [S.sub.19] + 11 [S.sub.17]
[v.sub.20] 98 [S.sub.20]
[v.sub.21] 101 [S.sub.21]
RMSD
([cm.sup.-1])
Mode Main coordinate
A
[v.sub.1] v (C[F.sub.3]) antisymm.
[v.sub.2] v (C[F.sub.3]) antisymm.
[v.sub.3] v (C[F.sub.3]) symm.
[v.sub.4] [delta] (C[F.sub.3]) symm.
[v.sub.5] [delta] (C[F.sub.3]) antisymm.
[v.sub.6] [delta] (C[F.sub.3]) antisymm.
[v.sub.7] v (C-Se)
[v.sub.8] [rho] (C[F.sub.3])
[v.sub.9] [rho] (C[F.sub.3])
[v.sub.10] [delta] (CSeC)
[v.sub.11] Torsion (C[F.sub.3])
B
[v.sub.12] v (C[F.sub.3]) antisymm.
[v.sub.13] v (C[F.sub.3]) antisymm.
[v.sub.14] v (C[F.sub.3]) symm.
[v.sub.15] [delta] (C[F.sub.3]) symm.
[v.sub.16] [delta] (C[F.sub.3]) antisymm.
[v.sub.17] [delta] (C[F.sub.3]) antisymm.
[v.sub.18] v (C-Se)
[v.sub.19] [rho] (C[F.sub.3])
[v.sub.20] [rho] (C[F.sub.3])
[v.sub.21] Torsion (C[F.sub.3])
RMSD
([cm.sup.-1])
(a) From [Ref..sup.8]. Starred frequencies were measured in the
Raman spectrum of the liquid substance; other frequencies are from
the infrared gas spectrum. Qualitative intensities for observed
bands in IR and Raman (in parentheses): w, weak; m, medium;
s, strong; v, very.
(b) B3LYP/6-311G * calculations.
(c) From scaled quantum mechanics force field.
Table 4. Experimental and calculated frequencies, IR and Raman
intensities, and potential energy distribution (PED) for
[(C[F.sub.3]).sub.2].
Calculated
Mode Experimental (a) Calculated (b) SQM (c)
A
[v.sub.1] 1188 vs 1194 1175
[v.sub.2] 1188 vs 1170 1198
[v.sub.3] 1115 vs (vvw) 1098 1107
[v.sub.4] 742 (s) * 738 744
[v.sub.5] 531 mw (w) 540 541
[v.sub.6] 531 mw (w) 530 530
[v.sub.7] 333 (m) * 328 333
[v.sub.8] 318 (mw) * 304 318
[v.sub.9] 245 (vs) * 285 239
[v.sub.10] 245 (vs) * 239 273
[v.sub.11] 101 (s) * 90 94
[v.sub.12] ? 53 53
[v.sub.13] ? 27 27
B
[v.sub.14] 1169 vs (vvw) 1172 1163
[v.sub.15] 1169 vs (vvw) 1158 1176
[v.sub.16] 1090 vs (vvw) 1069 1078
[v.sub.17] 741 vs 736 743
[v.sub.18] 531 mw (w) 540 542
[v.sub.19] 531 mw (w) 526 527
[v.sub.20] 321 ms (mw) 319 328
[v.sub.21] 280 m (w) 279 275
[v.sub.22] 280 m (w) 272 260
[v.sub.23] 101 (s) * 96 99
[v.sub.24] ? 28 29
RMSD 13 7
([cm.sup.-1])
Raman intensity
IR intensity ([Angstrom].sup.4]
Mode (km [mol.sup.-1]) [amu.sup.-1])
A
[v.sub.1] 329.68 0.70
[v.sub.2] 0.11 1.76
[v.sub.3] 282.79 2.39
[v.sub.4] 17.38 11.00
[v.sub.5] 0.03 2.74
[v.sub.6] 0.83 1.27
[v.sub.7] 1.13 5.44
[v.sub.8] 0.63 3.24
[v.sub.9] 0.07 2.31
[v.sub.10] 0.02 7.42
[v.sub.11] 0.01 2.02
[v.sub.12] 0.17 0.43
[v.sub.13] 0.01 0.06
B
[v.sub.14] 397.70 0.17
[v.sub.15] 246.21 0.64
[v.sub.16] 653.29 3.78
[v.sub.17] 33.39 0.29
[v.sub.18] 0.10 0.22
[v.sub.19] 1.19 0.38
[v.sub.20] 1.75 3.69
[v.sub.21] 1.64 1.35
[v.sub.22] 0.14 0.39
[v.sub.23] 1.34 1.28
[v.sub.24] 0.02 0.04
RMSD
([cm.sup.-1])
Mode PED (contributions [greater than or equal to] 10%)
A
[v.sub.1] 79 [S.sub.1] + 21 [S.sub.2] + 15 [S.sub.5]
[v.sub.2] 78 [S.sub.2] + 18 [S.sub.1] + 14 [S.sub.6]
[v.sub.3] 71 [S.sub.3] + 48 [S.sub.4] + 20 [S.sub.7]
[v.sub.4] 45 [S.sub.4] + 33 [S.sub.3] + 12 [S.sub.7]
[v.sub.5] 74 [S.sub.5]
[v.sub.6] 75 [S.sub.6]
[v.sub.7] 27 [S.sub.7] + 22 [S.sub.9] + 20 [S.sub.8] +
10 [S.sub.11]
[v.sub.8] 57 [S.sub.8] + 39 [S.sub.7]
[v.sub.9] 57 [S.sub.9] + 27 [S.sub.8]
[v.sub.10] 92 [S.sub.10] + 12 [S.sub.6]
[v.sub.11] 98 [S.sub.11] + 19 [S.sub.9]
[v.sub.12] 92 [S.sub.12]
[v.sub.13] 98 [S.sub.13] + 13 [S.sub.12]
B
[v.sub.14] 57 [S.sub.14] + 47 [S.sub.15] + 11 [S.sub.18]
[v.sub.15] 55 [S.sub.15] + 45 [S.sub.14]
[v.sub.16] 77 [S.sub.16] + 49 [S.sub.17] + 22 [S.sub.20]
[v.sub.17] 46 [S.sub.17] + 30 [S.sub.16] + 13 [S.sub.20]
[v.sub.18] 74 [S.sub.18]
[v.sub.19] 78 [S.sub.19]
[v.sub.20] 56 [S.sub.20] + 12 [S.sub.17]
[v.sub.21] 65 [S.sub.21] + 16 [S.sub.20]
[v.sub.22] 95 [S.sub.22]
[v.sub.23] 89 [S.sub.23] + 30 [S.sub.21]
[v.sub.24] 101 [S.sub.24]
RMSD
([cm.sup.-1])
Mode Main coordinate
A
[v.sub.1] v (C[F.sub.3]) antisymm.
[v.sub.2] v (C[F.sub.3]) antisymm.
[v.sub.3] v (C[F.sub.3]) symm.
[v.sub.4] [delta] (C[F.sub.3]) symm.
[v.sub.5] [delta] (C[F.sub.3]) antisymm.
[v.sub.6] [delta] (C[F.sub.3]) antisymm.
[v.sub.7] v (C-Se)
[v.sub.8] v (Se-Se)
[v.sub.9] [rho] (CF3)
[v.sub.10] [rho] (CF3)
[v.sub.11] [delta] (CSeSe)
[v.sub.12] Torsion skeletal
[v.sub.13] Torsion (C[F.sub.3])
B
[v.sub.14] v (C[F.sub.3]) antisymm.
[v.sub.15] v (C[F.sub.3]) antisymm.
[v.sub.16] v (C[F.sub.3]) symm.
[v.sub.17] [delta] (C[F.sub.3]) symm.
[v.sub.18] [delta] (C[F.sub.3]) antisymm.
[v.sub.19] [delta] (C[F.sub.3]) antisymm.
[v.sub.20] v (C-Se)
[v.sub.21] [rho] (C[F.sub.3])
[v.sub.22] [rho] (C[F.sub.3])
[v.sub.23] [delta] (CSeSe)
[v.sub.24] Torsion (C[F.sub.3])
RMSD
([cm.sup.-1])
(a) From [Ref..sup.8]. Starred frequencies were measured in the
Raman spectrum of the liquid substance; other frequencies are from
the infrared gas spectrum. Qualitative intensities for observed
bands in IR and Raman (in parentheses): w, weak; m, medium;
s, strong; v, very.
(b) B3LYP/6-311G * calculations.
(c) From scaled quantum mechanics force field.
Table 5. Natural internal (local symmetry) coordinates for
[(C[F.sub.3]).sub.2]Se.
Definition (according to Fig. 1) Description (a)
A
[S.sub.1] = 2d (1-2) - d (1-3) - d (1-4) + 2d (6-7) v (C[F.sub.3])
- d (6-9) - d (6-8) antisymm.
[S.sub.2] = d (1-3) - d (1-4) + d (6-9) - d (6-8) v (C[F.sub.3])
antisymm.
[S.sub.3] = d (1-2) + d (1-3) + d (1-4) + d (6-7) v (C[F.sub.3])
+ d (6-9) + d (6-8) symm.
[S.sub.4] = [alpha] (2-1-3) + [alpha] (2-1-4) + [delta]
[alpha] (3-1-4) - [beta] (2-1-5) - [beta] (3-1-5) (C[F.sub.3])
- [beta] (4-1-5) + [alpha] (9-6- 7) + [alpha] symm.
(9-6-8) + [alpha] (7-6-8) - [beta] (9-6-5) -
[beta] (7-6-5) - [beta] (8-6-5)
[S.sub.5] = 2 [alpha] (3-1-4) - [alpha] (2-1-3) - [delta]
[alpha] (2-1-4) + 2 [alpha] (9-6-8) - [alpha] (C[F.sub.3])
(9-6-7) - [alpha] (7-6-8) antisymm.
[S.sub.6] = [alpha] (2-1-3) - [alpha] (2-1-4) + [delta]
[alpha] (9-6-7) - [alpha] (7-6-8) (C[F.sub.3])
antisymm.
[S.sub.7] = t (1-5) + t (6-5) v (C-Se)
[S.sub.8] = 2[beta] (2-1-5) - [beta] (3-1-5) - [rho]
[beta] (4-1-5) + 2[beta] (7-6-5) - [beta] (9-6-5) (C[F.sub.3])
- [beta] (8-6-5)
[S.sub.9] = [beta] (3-1-5) - [beta] (4-1-5) + [rho]
[beta] (9-6-5) - [beta] (8-6-5) (C[F.sub.3])
[S.sub.10] = [delta] (1-5-6) [delta] (CSeC)
[S.sub.11] = [Summation] [tau] Torsion
[[F.sub.i]-[C.sub.1]-[Se.sub.5]-[C.sub.6]] + (C[F.sub.3])
[Summation] [tau]
[[F.sub.i]-[C.sub.6]-[Se.sub.5]-[C.sub.1]]
B
[S.sub.12] = d (1-3) - d (1-4) - d (6-9) + d (6-8) v (C[F.sub.3])
antisymm.
[S.sub.13] = 2d (1-2) - d (1-3) - d (1-4) - 2d v (C[F.sub.3])
(6-7) + d (6-9) + d (6-8) antisymm.
[S.sub.14] = d (1-2) + d (1-3) + d (1-4) - d (6-7) v (C[F.sub.3])
- d (6-9) - d (6-8) symm.
[S.sub.15] = [alpha] (2-1-3) + [alpha] (2-1-4) + [delta]
[alpha] (3-1-4) - [beta] (2-1-5) - [beta] (3-1-5) (C[F.sub.3])
- [beta] (4-1-5) - [alpha] (9-6-7) - [alpha] symm.
(9-6-8) - [alpha] (7-6-8) + [beta] (9-6-5) +
[beta] (7-6-5) + [beta] (8-6-5)
[S.sub.16] = 2[alpha] (3-1-4) - [alpha] (2-1-3) - [delta]
[alpha] (2-1-4) - 2[alpha] (9-6-8) + [alpha] (C[F.sub.3])
(9-6-7) + [alpha] (7-6-8) antisymm.
[S.sub.17] = [alpha] (2-1-3) - [alpha] (2-1-4) - [delta]
[alpha] (9-6-7) + [alpha] (7-6-8) (C[F.sub.3])
antisymm.
[S.sub.18] = t (1-5) - t (6-5) v (C-Se)
[S.sub.19] = [beta] (3-1-5) - [beta] (4-1-5) - [rho]
[beta] (9-6-5) + [beta] (8-6-5) (C[F.sub.3])
[S.sub.20] = 2[beta] (2-1-5) - [beta] (3-1-5) - [rho]
[beta] (4-1-5) - 2[beta] (7-6-5) + [beta] (9-6-5) (C[F.sub.3])
+ [beta] (8-6-5)
[S.sub.21] = [Summation] [tau] Torsion
[[F.sub.i]-[C.sub.1]-[Se.sub.5]-[C.sub.6]] - (C[F.sub.3])
[Summation] [tau]
[[F.sub.i]-[C.sub.6]-[Se.sub.5]-[C.sub.1]]
(a) v, stretching; [delta], deformation; [rho], rocking.
Table 6. Natural internal (local symmetry) coordinates for
[(C[F.sub.3]).sub.2].
Definition (according to Fig. 1) Description (a)
A
[S.sub.1] = 2d (1-7) - d (1-5) - d v (C[F.sub.3])
(1-6) + 2d (4-9) - d (4-10) - d antisymm.
(4-8)
[S.sub.2] = d (1-5) - d (1-6) + d v (C[F.sub.3])
(4-10) - d (4-8) antisymm.
[S.sub.3] = d (1-7) + d (1-5) + d v (C[F.sub.3])
(1-6) + d (4-9) + d (4-10) + d (4-8) symm.
[S.sub.4] = [alpha] (5-1-7) + [alpha] [delta]
(5-1-6) + [alpha] (6-1-7) - [beta] (5-1-2) - (C[F.sub.3])
[beta] (6-1-2) - [beta] (7-1-2) + [alpha] symm.
(10-4-8) + [alpha] (10-4-9) + [alpha] (8-4-9) -
[beta] (10-4-3) - [beta] (8-4-3) - [beta] (9-4-3)
[S.sub.5] = 2[alpha] (5-1-6) - [alpha] (5-1-7) - [delta]
[alpha] (6-1-7) + 2 [alpha] (10-4-8) - [alpha] (C[F.sub.3])
(10-4-9) - [alpha] (8-4-9) antisymm.
[S.sub.6] = [alpha] (5-1-7) - [alpha] (6-1-7) + [delta]
[alpha] (10-4-9) - [alpha] (8-4-9) (C[F.sub.3])
antisymm.
[S.sub.7] = t (1-2) + t (4-3) v (C-Se)
[S.sub.8] = r (2-3) v (Se-Se)
[S.sub.9] = 2[beta] (7-1-2) - [beta] (6-1-2) - [rho]
[beta] (5-1-2) + 2[beta] (9-4-3) - [beta] (8-4-3) (C[F.sub.3])
- [beta] (10-4-3)
[S.sub.10] = [beta] (6-1-2) - [beta] (5-1-2) + [rho]
[beta] (8-4-3) - [beta] (10-4-3) (C[F.sub.3])
[S.sub.11] = delta] (1-2-3) + [delta] (2-3-4) [delta] (CSeSe)
[S.sub.12] = [tau] (1-2-3-4) Torsion skeletal
[S.sub.13] = [Summation] [tau] Torsion
[[F.sub.i]-[C.sub.1]-[Se.sub.2]-[C.sub.3] + (C[F.sub.3])
[Summation] [tau]
[[F.sub.i]-[C.sub.4]-[Se.sub.3]-[C.sub.2]]
B
[S.sub.14] = 2d (1-7) - d (1-5) - d (1-6) - 2d v (C[F.sub.3])
(4-9) + d (4-10) + d (4-8) antisymm.
[S.sub.15] = d (1-5) - d (1-6) - d (4-10) + d (4-8) v (C[F.sub.3])
antisymm.
[S.sub.16] = d (1-7) + d (1-5) + d (1-6) - d (4-9) v (C[F.sub.3])
- d (4-10) - d (4-8) symm.
[S.sub.17] = [alpha] (5-1-7) + [alpha] (5-1-6) + [delta]
[alpha] (6-1-7) - [beta] (5-1-2) - [beta] (6-1-2) (C[F.sub.3])
- [beta] (7-1-2) - [alpha] (10-4-8) - [alpha] symm.
(10-4-9) - [alpha] (8-4-9) + [beta] (10-4-3) +
[beta] (8-4-3) + [beta] (9-4-3)
[S.sub.18] = 2[alpha] (5-1-6) - [alpha] (5-1-7) - [delta]
[alpha] (6-1-7) - 2 [alpha] (10-4-8) + [alpha] (C[F.sub.3])
(10-4-9) + [alpha] (8-4-9) antisymm.
[S.sub.19] = [alpha] (5-1-7) - [alpha] (6-1-7) - [delta]
[alpha] (10-4-9) + [alpha] (8-4-9) (C[F.sub.3])
antisymm.
[S.sub.20] = t (1-2) - t (4-3) v (C-Se)
[S.sub.21] = 2[beta] (7-1-2) - [beta] (6-1-2) - [rho]
[beta] (5-1-2) - 2[beta] (9-4-3) + [beta] (8-4-3) (C[F.sub.3])
+ [beta] (10-4-3)
[S.sub.22] = [beta] (6-1-2) - [beta] (5-1-2) - [rho]
[beta] (8-4-3) + [beta] (10-4-3) (C[F.sub.3])
[S.sub.23] = [delta] (1-2-3) - [delta] (2-3-4) [delta] (CSeSe)
[S.sub.24] = [Summation] [tau] Torsion
[[F.sub.i]-[C.sub.1]-[Se.sub.2]-[C.sub.3]] - (C[F.sub.3])
[Summation [tau]
[[F.sub.i]-[C.sub.4]-[Se.sub.3]-[C.sub.2]]
(a) v, stretching; [delta], deformation; [rho], rocking.
Table 7. Scaling factors for the force field of the molecules
[(C[F.sub.3]).sub.2]Se and [(C[F.sub.3]).sub.2].
Coordinates (a) [(C[F.sub.3]).sub.2]Se [(C[F.sub.3]Se).sub.2]
v (C[F.sub.3]), 1.009 1.008
[delta] (C[F.sub.3]),
Torsion (C[F.sub.3])
[delta] (CSeC), 1.136 1.115
v (C-Se)
[delta] (CSeSe), -- 1.115
v (Se-Se)
[rho] (C[F.sub.3]) 0.935 0.907
(a) v, stretching; [delta], deformation; [rho], rocking.
Table 8. Internal force constants for [(C[F.sub.3]).sub.2]Se,
[(C[F.sub.3]).sub.2], and the related molecules C[F.sub.3]SeX.
This work
Force constant (a) [(C[F.sub.3]).sub.2]Se [(C[F.sub.3]Se).sub.2]
Bond stretchings
f (C-F) (b) 6.047 5.982
f (C-Se) 2.73 2.502
f (Se-Se) -- 2.273
f (C-F/C-F) (b) 0.824 0.809
f (C-F/C-Se) 0.39 0.338
Deformations
f (F-C-F) (b) 1.287 1.278
f (F-C-Se) (b) 0.818 0.788
f (C-Se-Se) -- 1.064
f (C-Se-C) 1.254 --
(2)
Force constant (a) C[F.sub.3]SeCN C[F.sub.3]SeC[H.sub.3]
Bond stretchings
f (C-F) (b) 6.167 5.841
f (C-Se) 2.583 2.742
f (Se-Se)
f (C-F/C-F) (b) 0.802 0.789
f (C-F/C-Se) 0.39 0.362
Deformations
f (F-C-F) (b) 1.269 1.304
f (F-C-Se) (b) 0.854 0.874
f (C-Se-Se)
f (C-Se-C) 0.973 0.916
(a) Units are mdyn [[Angstrom].sup.-1] for stretchings and
stretch-stretch interactions and mdyn [Angstrom] [rad.sup.-2]
for angular deformations.
(b) Mean values.
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