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Rotavirus serotype G9P[8] and acute gastroenteritis outbreak in children, northern Australia.


During 2001, an outbreak of severe acute gastroenteritis gastroenteritis: see enteritis.
gastroenteritis

Acute infectious syndrome of the stomach lining and intestines. Symptoms include diarrhea, vomiting, and abdominal cramps.
 swept through Central and northern Australia The term northern Australia is generally considered to include the States and territories of Australia of Queensland and the Northern Territory. The part of Western Australia (WA) north of latitude 26° south — a definition widely used in law and State government policy  and caused serious disruption to health services health services Managed care The benefits covered under a health contract . We tracked and characterized the rotavirus rotavirus /ro·ta·vi·rus/ (ro´tah-vi?rus) any member of the genus Rotavirus. ro´taviral
Rotavirus /Ro·ta·vi·rus/ (ro´tah-vi?rus 
 strain implicated im·pli·cate  
tr.v. im·pli·cat·ed, im·pli·cat·ing, im·pli·cates
1. To involve or connect intimately or incriminatingly: evidence that implicates others in the plot.

2.
 in the outbreak. Comparison of the electropherotypes of outbreak samples suggested that one G9P[8] strain was likely responsible for the outbreak. Samples were obtained from geographically distinct regions of Australia where the epidemic had occurred. The outbreak strains showed identical nucleotide sequences in genes encoding three rotavirus proteins, VP7, VP8, and NSP (1) (Network Service Provider) An organization that provides a high-speed Internet backbone to ISPs and other service providers. Sprint, MCI and UUNET are examples of NSPs. See Internet backbones. 4, but they were distinct from G9P[8] strains isolated in previous years. Several of the amino acid amino acid (əmē`nō), any one of a class of simple organic compounds containing carbon, hydrogen, oxygen, nitrogen, and in certain cases sulfur. These compounds are the building blocks of proteins.  substitutions on the VP7 and NSP4 proteins were identified in regions known to influence function and may have contributed to the emergence and increased dominance of the outbreak strains. Rotavirus serotype serotype /se·ro·type/ (ser´o-tip) the type of a microorganism determined by its constituent antigens; a taxonomic subdivision based thereon.

se·ro·type
n.
See serovar.

v.
 surveillance should continue with methods capable of identifying new and emerging types.

**********

Rotaviruses are the major cause of severe gastroenteritis in young children worldwide. Surveillance studies and serum antibody studies indicate that all young children arc likely to have had at least one rotavirus infection rotavirus infection Virology RI is usually mild, but may be severe in children ≤ 2 yrs due to intense vomiting Morbidity > 870,000 children < age 5 die of rotavirus infection in developing countries, in contrast to 75 to 150 in the US Epidemiology  by the time they are 3 years of age. Worldwide, approximately 400,000-600,000 children in developing countries die of retavirus-associated dehydration each year (1). Most deaths occur in developing countries because of delays in access to treatment. Despite low death rates in industrialized in·dus·tri·al·ize  
v. in·dus·tri·al·ized, in·dus·tri·al·iz·ing, in·dus·tri·al·iz·es

v.tr.
1. To develop industry in (a country or society, for example).

2.
 countries, good hygiene and sanitation do not appear to reduce the prevalence or prevent the spread of rotavirus.

Since 1983, vaccines to protect against clinically severe disease have been under development. The first vaccines were aimed at providing specific protection against the serotypes G1, G2, G3, and G4, which were predominant since 1973 (2). Rotavirus surveillance programs in Bangladesh (3), Brazil (4), India (5), the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area.  (6), and Malawi (7) show that additional G types (G5, G6, GS, G9, G10) can cause severe disease in children and are of emerging importance in some communities. Serotype G9 is recognized as the most widespread of the emerging serotypes and is new considered the fifth major G type. The serotype has been identified since 1996 as a frequent cause of severe disease in hospitalized children from many countries, including the United States, Japan, India, Bangladesh, France, Malawi, Nigeria, Australia, China, Thailand, and the United Kingdom (3,6,8-12).

Characterizing rotaviruses into serotypes is based on differences in genetic and antigenic structure of the two outer coat proteins. The rotavirus genome is made up of 11 segments of double-stranded RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
 located inside the core of a triple-layered structure. The outer capsid capsid /cap·sid/ (kap´sid) the shell of protein that protects the nucleic acid of a virus; it is composed of structural units, or capsomers.

cap·sid
n.
 proteins, VP4 and VP7, elicit neutralizing antibody neu·tral·iz·ing antibody
n.
An antibody that reacts with an infectious agent, usually a virus, and destroys or inhibits its infectiveness and virulence.
 immune responses that are both serotype-specific and cross-reactive (13). Antigenic differences in VP4 and VP7 are the basis of the classification into G (VP7 glycoprotein glycoprotein (glī'kōprō`tēn), organic compound composed of both a protein and a carbohydrate joined together in covalent chemical linkage. ) and P (protease-activated VP4 protein) serotypes. To date, 8 P serotypes and 10 G serotypes have been identified in humans by cross-neutralization tests (13,14). Epidemiologic studies have shown that serotypes G1, G2, G3, and G4, associated with PLA (Programmable Logic Array) A type of programmable logic chip (PLD) that contained arrays of programmable AND and OR gates. PLAs are no longer used. See PLD.

(language, music) Pla - A high-level music programming language, written in SAIL.
[8] or Pl B[4], have been the most common serotypes to cause severe disease in children worldwide in the 1980s and 1990s (2). Genetic and antigenic variation Antigenic variation is the process by which an infectious organism alters its surface proteins in order to evade a host immune response. This change in antigenic profile may occur as the pathogen passes through a host population (also called "antigenic diversity") or may take place  has been recorded within G 1, G2, G3, and G4 serotypes (15). G9 strains may be more susceptible to genetic change than these other serotypes (3,16).

The emergence of G9 strains in urban Australia in 1997, together with the increasing prevalence and persistence of this serotype, has had a major effect on healthcare services in Australia (11). G9 strains were initially identified in Central Australia Central Australia: see Northern Territory, Australia.  in 1999 in 9% of children admitted to the Alice Springs Alice Springs, town (1991 pop. 20,448), Northern Territory, Australia. It lies in a pastoral area surrounded by desert near the center of the continent and is a stop on the Adelaide Darwin Railway.  Hospital but appeared not to persist, since the strains were not detected in this area in 2000 (17). During May 2001, one of the largest recorded outbreaks of severe acute gastroenteritis in young aboriginal children from remote and urban areas of Central Australia resulted in 246 emergency department visits and the hospitalization of 137 children at Alice Springs Hospital (18). All specimens from hospitalized children were rotavirus positive. The epidemic spread rapidly northward, causing outbreaks of rotavirus-induced acute gastroenteritis in many communities spread over 1 million [km.sup.2] in the northern Territory and in outback areas of southwestern Queensland and West Australia from May through July 2001 (Figure 1). The National Rotavirus Strain Surveillance Program received specimens from the hospitalized patients. Serotype analysis indicated that G9 strains were responsible for the outbreak (11).

[FIGURE 1 OMITTED]

This study describes the tracking and characterizing of serotype G9P[8] strains implicated in the outbreaks in central and northern Australia in 2001 and provides evidence that the outbreaks were caused by a single strain. The results highlight the importance of continued detailed epidemiologic and virologic studies of rotavirus serotypes that cause severe gastroenteritis.

Materials and Methods

Epidemiologic Features of Outbreaks

Alice Springs Hospital in Central Australia provides tertiary medical care for approximately 43,000 people living in a catchment area catchment area or drainage basin, area drained by a stream or other body of water. The limits of a given catchment area are the heights of land—often called drainage divides, or watersheds—separating it from neighboring drainage  of >1 million [km.sup.2] Approximately 28,000 people live in the city and 15,000 in small remote communities that range from 12 to 800 persons (18). Emergency transport to Alice Springs Hospital is provided when necessary by the Royal Flying Doctor Service. Each year epidemics of severe rotavirus diarrhea result in hospitalization of young children, usually during the cooler months from May to August. In May 2001, "one of the largest outbreaks of rotavirus in living memory swept through Central Australia," resulting in hospitalization of 137 children with confirmed rotavirus infection. Sixty-one percent of these children were from remote regions. More than 90% of the children were identified as aboriginal. Fifty-nine percent were <12 months of age, and 96% were <4 years of age (18). A much larger number of children were less severely affected. At one stage, the Alice Springs Hospital, the only hospital serving a scattered population of 55,000 people, had 74 of its 164 beds occupied by children with gastroenteritis. Extra nurses had to be flown 1,500 km from Darwin to assist (18).

The epidemic moved northward during the next 2 months (June and July), causing an increase in the number of children admitted to hospital with acute gastroenteritis in centers such as Darwin and Gore. These towns are >1,500 km from Alice Springs. In addition cases of acute gastroenteritis were identified in remote communities to the northeast and northwest of Alice Springs, including Mount Isa (Figure 1).

Stool Samples

During 2001, a total of 348 specimens, examined by enzyme immunosorbent immunosorbent /im·mu·no·sor·bent/ (-sor´bent) an insoluble support for antigen or antibody used to absorb homologous antibodies or antigens, respectively, from a mixture; the antibodies or antigens so removed may then be eluted in pure  assay (EIA (Electronic Industries Alliance, Arlington, VA, www.eia.org) A membership organization founded in 1924 as the Radio Manufacturing Association. It sets standards for consumer products and electronic components. ) or heminested reverse transcription polymerase chain reaction “RT-PCR” redirects here. For real-time polymerase chain reaction, also called quantitative real time polymerase chain reaction or kinetic polymerase chain reaction, see real-time polymerase chain reaction.  (RT-PCR RT-PCR

reverse transcriptase-polymerase chain reaction. See PCR1.
) analysis, or both, were identified as serotype G9P[81. Rotavirus G serotype was determined by using an in-house EIA assay that incorporates neutralizing monoclonal antibodies This is a list of monoclonal antibodies, antibodies which are clones of a single parent cell. When used as medications, the generic names end in -mab (see "Nomenclature of monoclonal antibodies").  specific for G 1, G2, G3, G4, and G9 antigens (19,20). The EIA was supplemented by RT-PCR analysis to determine G and P genotypes (21,22) The electropherotypes of all 348 G9P[8] strains were determined by polyacrylamide gel electrophoresis polyacrylamide gel electrophoresis
n.
A technique for determining the molecular weight of proteins, in which proteins that have been coated in an anionic detergent undergo electrophoresis in a polyacrylamide gel.
 (PAGE) (20).

Fifteen G9P[8] rotavirus-positive specimens were selected for sequence analysis on the basis of electropherotype, location, and timing of sample collection (Table 1). Ten specimens were representative of strains from the 2001 outbreak and included six specimens from Alice Springs and the surrounding remote communities (Docker River, Hermannsberg, and Maryvale); Gove, Mount Isa, Darwin, and Perth were each represented by a single specimen. Five G9P[8] strains collected from children admitted to hospital in the cities of Alice Springs (1999), Perth (1999), Sydney (1999), and Melbourne (2000 and 2001) were used for comparison.

RT-PCR Amplification

Rotavirus dsRNA was obtained from 10% fecal extracts by using a standard phenol-chloroform extraction Phenol-chloroform extraction is a liquid-liquid extraction technique in biochemistry and molecular biology for purifying DNA contaminated by histones and other proteins. Equal volumes of a phenol:chloroform mixture and the aqueous DNA sample are mixed, forming a biphasic mixture.  and a hydroxyapatite hydroxyapatite /hy·droxy·ap·a·tite/ (-ap´ah-tit) an inorganic calcium-containing constituent of bone matrix and teeth, imparting rigidity to these structures.  purification method (23). The dsRNA gene segments, encoding proteins VP4, VP7, NSP1, and NSP4, were reverse transcribed and amplified by PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
.

Full-length gene 9 was amplified with primers Beg9 and End9 (21). For gene segment 4, primers con2 and con3 were used to amplify an 887-bp region encompassing the VP8 subunit of the VP4 gene (22). Gene segment 10 was amplified with primers complementary to the 3' end of each RNA segment (24). A 400-bp fragment of the gene segment, encoding NSP1 protein, was amplified with internal primers (25).

Sequence Analysis

PCR products were purified with gel extraction In molecular biology, gel extraction or gel isolation is a technique used to isolate a desired fragment of intact DNA from an agarose gel following agarose gel electrophoresis.  and spin column purification (Qiagen, Inc., Hilden, Germany). The nucleotide sequence of each PCR product was determined in both directions with the dideoxynucleotide chain terminator method with the BigDye sequencing kit (Perkin Elmer-Applied Biosystems, Foster City, CA) and specific oligonucleotide primers in an automated sequencer See MIDI sequencer.

(music) sequencer - Any system for recording and/or playback of music via a programmable memory which stores music not as audio data, but as some representation of notes.
.

Sequences of each gene segment were analyzed with the Sequencher program (Gene Codes Corp., Inc., Ann Arbor Ann Arbor, city (1990 pop. 109,592), seat of Washtenaw co., S Mich., on the Huron River; inc. 1851. It is a research and educational center, with a large number of government and industrial research and development firms, many in high-technology fields such as , MI) and subsequently compared with other sequences by using E-CLUSTAL W and analyzed by using the DNAdist and Neighbor programs from PHYLIP PHYLIP Phylogeny Inference Package (genetics software)  software accessed through BioManager, Australian Genomic Information Service (ANGIS ANGIS Australian National Genomic Information Service , University of Sydney The University of Sydney, established in Sydney in 1850, is the oldest university in Australia. It is a member of Australia's "Group of Eight" Australian universities that are highly ranked in terms of their research performance. ). The statistical significance of the constructed phylogenies was analyzed with the Seqboot program to conduct bootstrap See boot.

(operating system, compiler) bootstrap - To load and initialise the operating system on a computer. Normally abbreviated to "boot". From the curious expression "to pull oneself up by one's bootstraps", one of the legendary feats of Baron von Munchhausen.
 analysis, with 100 replicates (26). Phylogenetic trees were displayed with the Treeview program. The nucleotide sequences for genes encoding the VP7, VP8, NSP4, and NSP1 of the outbreak strains described in this study have been deposited in GenBank sequence databank and assigned the accession numbers AY629560--AY629562.

Northern Hybridization hybridization /hy·brid·iza·tion/ (hi?brid-i-za´shun)
1. crossbreeding; the act or process of producing hybrids.

2. molecular hybridization

3.
 Analysis

Not-them hybridization analysis was carried out on four Australian G9 strains isolated during 2001, two outbreak strains from Alice Springs (Ob-AS -1 and Ob-AS-3) and two nonoutbreak strains from Melbourne (MG9.06 and Melb-G9.21). Northern hybridization was performed with whole genome probes derived from virus strains F45 (G9,P1A[8], SGII, Wa genogroup) and RV-5 (G2,P1B[4], SGI (SGI, Sunnyvale, CA, www.sgi.com) A manufacturer of workstations and servers, founded in 1982 by Jim Clark. The company was founded as Silicon Graphics, Inc., but changed to its acronym in 1999. , DS1 genogroup). Probes were generated by labeling cDNA, derived by reverse transcription reverse transcription
n.
The process by which DNA is synthesized from an RNA template.
 of purified dsRNA with random hexanucleotide primers and digoxigenin (DIG)-11-dUTP. Northern hybridization was performed with 10 ng/mL of probe and performed under stringent conditions (24).

Results

Epidemiologic Features of Rotavirus Outbreak

Serotype analysis of specimens obtained from children hospitalized during the gastroenteritis epidemic showed that rotavirus serotype G9 was the predominant type identified during the Central and northern Australian 2001 outbreak (Table 2) (17). Serotype G9 strains were the most commonly identified 69% (111/161) in Alice Springs, 81% (60/74) in Darwin, and 100% (31/31 and 25/25) in Gore and Mount Isa. Serotype G9 represented 25.2% of specimens from Western Australia Western Australia, state (1991 pop. 1,409,965), 975,920 sq mi (2,527,633 sq km), Australia, comprising the entire western part of the continent. It is bounded on the N, W, and S by the Indian Ocean. Perth is the capital. . However, the results from Western Australia include samples collected from two regions, one urban (Perth) and the other remote communities in the northwestern Australian outback. G9 represented 18.6% in the urban collection and 45.1% in the remote collection. All samples obtained during the epidemic outbreak (Alice Springs, Darwin, Gore, Mount Isa, and Western Australia) had an identical long electropherotype (Figure 2A), which was distinct from the patterns of serotype G9 strains identified in other Australian locations (Melbourne, Sydney, Perth, and Alice Springs) during previous rotavirus seasons (Figure 2B).

[FIGURE 2 OMITTED]

Sequence Analysis

The gene encoding VP7 was sequenced for nine representative strains isolated from several locations during the outbreak (Ob-Perth- 1, Ob-AS- 1, Ob-Her- 1, Ob-DR- 1, Ob-Mv-1, Ob-AS-3, Ob-Dar-1, Ob-MI-1, and Ob-Gv-1). The VP7 genes were highly conserved, and all outbreak strains were identical at both the nucleotide and amino acid level. Comparison of the VP7 gene between the outbreak strains and other serotype G9 strains isolated from 1999 to 2000 in Melbourne before the outbreak (MG9.06, Melb-G9.21, and Syd-G9.1), Perth (Perth G9.1) and Alice Springs (AS-G9.1), indicated a highly conserved gene. The VP7 genes had nucleotide and amino acid homology homology (hōmŏl`əjē), in biology, the correspondence between structures of different species that is attributable to their evolutionary descent from a common ancestor.  of >99% identity. Alignment of the deduced amino acid sequences of the VP7 gene showed three conserved amino acid substitutions between the outbreak and nonoutbreak strains (Figure 3). These were at position 242 (Asn-Ser) in the antigenic F region, at position 68 (Ala-Val) in antigenic region D and at amino acid position 40 (Leu Leu leucine.

Leu
abbr.
leucine



Leu

leucine.
 Phe), which is outside of the major antigenic regions.

[FIGURE 3 OMITTED]

The nucleotide sequences of the VP8 subunit of the VP4 gene were determined and compared for three outbreak strains (Ob-Perth-1, Ob-AS-1, and Ob-AS-2) and two nonoutbreak strains (MG9.06, Melb-G9.21). Analysis of the predicted amino acid sequence indicated that the P[8] VP4 gene of all Australian serotype G9 strains (outbreak and nonoutbreak) had an F45-like P sublineage; 9 of the 11 amino acid positions used to classify the P sublineages were conserved with the F45-1ike residues (27). At position 162, all of the Australian strains possessed the Wa-lineage residue of arginine arginine (är`jənĭn), organic compound, one of the 20 amino acids commonly found in animal proteins. Only the l-stereoisomer participates in the biosynthesis of proteins. , and at position 195, a Gly was observed rather than Asp or Ash. VP8 genes of the outbreak and nonoutbreak strains differed. Comparison of the amino acid sequences of the outbreak and nonoutbreak strains showed three conserved differences at positions 21 (Glu-Lys), 91 (Ile Val), and 249 (Val-Ile).

The complete gene segment 10 sequence, encoding the NSP4 protein, was determined for four outbreak strains (Ob-Perth-1, Ob-AS-1, Ob-AS-3, and Ob-Dar-1) and two nonoutbreak strains (MG9.06, Melb-G9.21). All of the outbreak strains had identical nucleotide and deduced amino acid sequences and at least 97% nucleotide identity and amino acid homology with the nonoutbreak strains. Alignment of the deduced amino acid sequences showed five conserved differences, at aa53 (Thr-Ala), aa76 (Val-Ile), aal41 (Thr-Ile), aa142 (Ile-Val), and aal61 (Asn-Ser) between the outbreak and nonoutbreak strains.

Northern Hybridization Analysis

Northern hybridization analysis was conducted on the Australian serotype G9 strains to investigate the genomic relationship among the gene segments from the outbreak and nonoutbreak strains (data not shown). Hybridization results showed that 10 gene segments hybridized strongly with the F45 whole genome probe, indicating that the Australian G9 strains belong to the Wa genogroup. Gene segment 5 of F45 failed to hybridize hy·brid·ize  
intr. & tr.v. hy·brid·ized, hy·brid·iz·ing, hy·brid·iz·es
1. To produce or cause to produce hybrids; crossbreed.

2.
 in all the outbreak and nonoutbreak strains. Partial nucleotide sequence analysis of the gene segment 5 (215-620 nt) NSP1 was conducted. A GenBank search showed that this gene had greatest identity (95%) with gene 5 from the human neonatal strain ST-3. Alignment of the deduced amino acid sequences between the outbreak strains (Ob-AS-1 and Ob-AS-3) and nonoutbreak strains (MG9.06 and Melb-G9.21) showed a highly conserved region The term Conserved region may refer to:
  • Conservation (genetics)
  • Highly conserved sequence
 with no conserved amino acid substitutions.

Tracking Rotavirus Outbreak G9P[8] Strain

The temporal appearance of rotavirus G9 infections in each of the geographic regions studied is illustrated in Figure 4. On the basis of these results, the suggested direction of spread of this strain is indicated in Figure 1. The rotavirus outbreak G9 strain was identified first in Perth, Western Australia This article is about the metropolitan area of Perth, Western Australia. For the local government area, see City of Perth.
Perth is the capital of the Australian state of Western Australia.
, in March/April, and then in Central Australia, where the peak prevalence of rotavirus diarrhea occurred in Alice Springs in May. The outbreak strain then spread rapidly northward to Darwin in June and July. Outbreaks to the west (Docker River) and northeast (Mount Isa, Gove) of Alice Springs were also identified during June and July 2001.

[FIGURE 4 OMITTED]

Discussion

We report the genetic characterization of rotavirus G9P[8] strains isolated during the outbreak of severe rotavirus diarrhea that occurred in Central Australia during 2001. Results described in this study comprising PAGE analysis of all the outbreak strains and sequence analysis of gene segments encoding VP7, VP8, and NSP4 from representative strains illustrate that the Central Australian rotavirus outbreak was the result of the spread of a single strain of serotype G9. This strain was distinct from serotype G9 strains present in Melbourne during the same year (2001) and in previous rotavirus seasons in Alice Springs and other Australian locations, including Melbourne, Sydney, and Perth (28).

Serotype G9 is the most widespread of the emerging rotavirus serotypes. Recent epidemiologic studies suggest that this type represents a common global serotype. In Australia, serotype G9 has progressed from the initial identification of three isolates in 1997 (10) to the second most common serotype from 1999 through 2001, to becoming the most common serotype in Australia during 2002 (40% of all isolates) and 2003 (74%) (11,17). Similarly, serotype G9 was identified as the prevailing serotype in several Japanese cities from 1998 through 2000 (29).

This outbreak represented one of the largest outbreaks of rotavirus disease in Central Australian history. The outbreak, strain while appearing to have its origins in urban Perth, on the coast of Western Australia, had its major effect on remote communities in Central Australia. During May 2001, a total of 246 children with acute gastroenteritis arrived at the emergency department of the Alice Springs Hospital; 137 children were hospitalized. The outbreak stretched medical and stalling resources to capacity (18). In Alice Springs, serotype G9 represented 69% of the typeable strains. The predominance of serotype G9 increased with the northwards spread of the outbreak. The tracking of this outbreak was possible because the timing of the rotavirus activity varied by geographic location, with each community being discrete and remote from the others. This finding was highlighted in Darwin and Gove, where 81% and 100% of the isolates were identified as serotype G9, respectively. We have shown that the Central Australian outbreak strain appeared to originate from serotype G9 strains present in Perth, Western Australia, during early 2001. The Perth G9P[8] strains possessed an identical electropherotype and identical gene sequences encoding for VP7, VP8, and NSP4 proteins to strains isolated earlier during the Central Australian outbreak.

The emergence and spread of the G9 "outbreak" strain corresponded with several deduced amino acid changes in viral proteins VP8, VP7, and NSP4 compared with nonoutbreak strains from Melbourne, Sydney, Perth, and Alice Springs. These proteins have previously been shown to influence virulence of rotavirus strains (30,31). Conserved changes in the gene coding for VP7 were identified in two important antigenic regions (regions D and F). These genetic changes likely affect the function of the VP7 protein virulence. One change is adjacent to the glycosylation site Asn-X-Thr at residues 69 71, a site common to all human rotavirus strains. The substitution at position 68 (Ala-Val) may influence glycosylation and hence alter the antigenic reactivity of this virus. An effect of glycosylation on virus antigenicity and virulence has been previously postulated (30,32). Additional evidence that the removal or addition of N-linked carbohydrates can influence viral antigenicity comes from several studies using N-MAbs and polyclonal antiserum polyclonal antiserum Immunology A Gemische of antibodies with distinct epitope reactivities, produced in response to a broad antigenic stimulus, which may be harvested from a person exposed to a particular pathogen and administered to another whose response to the  (32,33). The conserved substitution identified in the antigenic F region of the VP7 protein may also be important in virulence. This antigenic region has previously been shown to contain neutralization neutralization, chemical reaction, according to the Arrhenius theory of acids and bases, in which a water solution of acid is mixed with a water solution of base to form a salt and water; this reaction is complete only if the resulting solution has neither acidic nor  epitopes of serotype G9 viruses, and the region was only accessible in viruses that lacked glycosylation site in this region such as serotype G9 (33). This region may represent an immunodominant region in G9 viruses. The alterations in this region identified in this study may have altered the antigenicity of the strains such that they were able to avoid immune detection. This scenario has been used to explain the reemergence of rotavirus serotypes, in particular serotype G2, and the resultant intermittent epidemics. Alterations in the antigenicity of rotavirus serotype G2 strains were conferred by amino acid substitutions in the antigenic A region of the VP7 protein. A higher incidence of infection with these strains occurred in older children in the United Kingdom from 1995 through 1999, which suggests that cross-protective antibody failed to afford protection against these serotype G2 strains (34).

NSP4 has been shown to act as an enterotoxin enterotoxin /en·tero·tox·in/ (en´ter-o-tok?sin)
1. a toxin specific for the cells of the intestinal mucosa.

2. a toxin arising in the intestine.

3.
 in mice and is involved in virus pathogenesis by acting as a receptor for double-layered particles (35). Several studies have found that NSP4 has been associated with altered virulence, by sequence comparison of symptomatic and asymptomatic strains isolated from serotypically identical human strains (30,31) or symptomatic and asymptomatic porcine porcine /por·cine/ (por´sin) pertaining to swine.

porcine

pertaining to pig. See also hog (1), swine.


porcine circovirus 1
a nonpathogenic virus.
 strains tested in a mouse model (36), or by gene reassortment studies in a piglet Piglet

diffident little pig; tremulously courageous. [Children’s Lit.: Winnie-the-Pooh]

See : Timidity
 model (37). Our study has identified changes in important regions of this protein of the outbreak strain. Specifically, changes have been identified in a region of NSP4 critical for VP4 binding (aa112 148) and in a region associated with membrane destabilization de·sta·bi·lize  
tr.v. de·sta·bi·lized, de·sta·bi·liz·ing, de·sta·bi·liz·es
1. To upset the stability or smooth functioning of:
 (aa48-91) (38). These changes may affect virus stability. NSP4 has been shown to elicit an immune response in humans (39). However, the influence of these changes identified on immune recognition is unknown, since the antigenic regions are uncharacterized.

The electropherotype of the G9P[S] outbreak strains differed in the several respects from G9P[8] strains identified elsewhere in Australia from 1999 to 2001. Differences were most apparent in the mobility of gene segments 2 and 3. As yet, no evidence shows that genes 2 and 3 (coding for VP2 and VP3, respectively) are involved in virulence (37).

Northern hybridization analysis of both outbreak and nonoutbreak serotype G9 strains had a similar hybridization pattern. Ten of 11 segments hybridized to a Wa-like probe, which indicated that these strains all belong to the human Wa genogroup. Only gene segment 5, which encodes the NSP1 protein, failed to hybridize. The gene 5 showed greatest identity to gene 5 of the P[6] strains ST3 and M37, rather than P[8] strains. Several studies have shown that the G9 VP7 protein is capable of associating with both VP4 proteins Pl6] and P[8], in addition to VP6 proteins from subgroup I and II (3,16,40). A previous study has associated gene 5 with pathogenicity in the mouse model (41). However, alterations in the gene 5 segment cannot explain the emergence of this strain in Central Australia since limited sequence analysis failed to identify any genetic difference between the outbreak and nonoutbreak G9 strains. The results from this study further highlight the ability of serotype G9 strains to undergo reassortment and extend this observation to include gene segments that encode non-structural proteins.

Rotavirus surveillance programs using molecular assays have shown that most cases of acute gastroenteritis are associated with the globally common serotypes, G1-G4. However, the emergence of novel or rare serotypes, including the identification of serotypes G5, G6, G8, and G10, in children in many settings worldwide, has highlighted a much greater strain diversity than previously reported. The diversity of rotavirus strains has arisen because of the strains ability to undergo genetic evolution. A number of different mechanisms exist by which rotavirus strains can evolve, ranging from reassortment of single or multiple gene segments during mixed infections by strains of human-human origin or human-animal origin to generation of single point mutations in immunologically important genes. In particular, serotype G9 strains appear to have an enhanced capacity to reassort. Epidemiologic studies have identified G9 strains in combination with several different VP4 genogroups (P[4], P[6], P[8], and P[11]) and with both VP6 subgroup antigens (3,9,12,24,28,40). These mechanisms provide rotavirus with a unique capacity to rapidly evolve, and produce strains that have the potential to be epidemiologically important. Protection from rotavirus disease relies on production of heterotypic heterotypic /het·ero·typ·ic/ (-tip´ik) pertaining to, characteristic of, or belonging to a different type.

het·er·o·typ·ic or het·er·o·typ·i·cal
adj.
 immune responses after primary infection. However, novel strains may avoid stimulating preexisting pre·ex·ist or pre-ex·ist  
v. pre·ex·ist·ed, pre·ex·ist·ing, pre·ex·ists

v.tr.
To exist before (something); precede: Dinosaurs preexisted humans.

v.intr.
 immunity produced from previous rotavirus infections Rotavirus Infections Definition

Rotavirus is the major cause of diarrhea and vomiting in young children worldwide. The infection is highly contagious and may lead to severe dehydration (loss of body fluids) and even death.
 because of the unique nature of the outer capsid proteins. Outbreaks of acute gastroenteritis associated with an unusual serotype G2 strain and serotype G9 are two recent examples from Central Australia (42). Therefore, the diversity of rotavirus serotypes has important implications for vaccine development, especially if strains that are not targeted by current vaccine candidates continue to emerge as common types either globally or regionally.

National surveillance data since 2001 highlights the continued emergence of serotype G9 as the most prevalent serotype nationally, which results in the replacement of serotype G1 as the dominant strain for the first time since Australian rotavirus surveillance began in 1993. This study, which shows that a single rotavirus serotype G9 strain was responsible for a large epidemic of severe gastroenteritis in Central Australia, emphasizes that sequence alterations on viral proteins may be implicated in virus virulence. Continued surveillance of rotavirus serotypes, which includes the capacity to identify new and emerging serotypes, is important for successfully developing and implementing vaccines.
Table 1. Characterization of rotavirus strains recovered from infants
in outbreak and nonoutbreak settings

Strains            Isolation location/date    Laboratory designation

Outbreak (2001)
  Ob-Perth-1           Perth 3/26/2001               3084375
  Ob-AS-1          Alice Springs 5/12/2001            151572
  Ob-Her-1         Hermannsberg 5/12/2001             151496
  Ob-DR-1          Docker River 5/18/2001             152245
  Ob-MV-1            Maryvale 5/23/2001               152433
  Ob-AS-2          Alice Springs 5/25/2001            152704
  Ob-AS-3          Alice Springs 5/30/2001            153004
  Ob-Dar-1             Darwin 7/5/2001               6557739
  Ob-MI-1             Mt Isa 7/12/2001               65047767
  Ob-Gv-1               Gove 8/7/2001                 19522
Nonoutbreak
  MG9.06             Melbourne 9/1/2000
  Melb- G.21         Melbourne 1/3/2001
  Syd-G9.1            Sydney 6/17/1999              991680093
  Perth G9.1           Perth 9/20/1999                326924
  AS-G9.1          Alice Springs 9/13/1999             8705

Table 2. Serotyping results from Australian centers January-December,
2001

                                                         % of
                                                  rotavirus-positive
                                                  samples by serotype

Location                                    n      G1     G2     G3

Western Australia
  Urban                                    306    67.5    0.3    0.3
  Remote                                   102    34.3    1      --
Northern Australia (including Mt. Isa)
  Alice Springs                            161    24.8    --     --
  Darwin                                    74     5.4    --     --
  Gove                                      31     --     --     --
  Mt. Isa                                   25     --     --     --
Southern Australia
  Melbourne                                176    48.3    4.6    0

                                                  % of
                                            rotavirus-positive
                                            samples by serotype

Location                                   G4      G9      NT (a)

Western Australia
  Urban                                    --      18.6     15.1
  Remote                                   1       45.1     18.9
Northern Australia (including Mt. Isa)
  Alice Springs                            --      69        6.2
  Darwin                                   1       81       12.2
  Gove                                     --     100        --
  Mt. Isa                                  --     100        --
Southern Australia
  Melbourne                                6.8     10.2     30.1

(a) Nontypeable results include samples with mixed serotype results and
samples that do not react with any of the serotyping monoclonal
antibodies.


Acknowledgments

We thank all colleagues in collaborating laboratories for their interest and effort in collecting and providing specimens, F. Morey, J. De Boer, B. Truscott, A. Reed, C. Farrar, K. Lindsay, D. Smith, D. Harnett, A. Kesson, C. McIver, and R. Alexander.

This work was partially supported by grants from the Australian Commonwealth Department of Health and Aged Care, and GlaxoSmithKline. Dr. Kirkwood is supported by The Philip Bushell Research Fellowship awarded by the Gastroenterological Society of Australia.

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Dr. Kirkwood is a research fellow in the Enteric Virus enteric virus
n.
See enterovirus.
 Research Group, Murdoch Childrens Research Institute, Royal Children's Hospital The Royal Children's Hospital in Melbourne, Australia is the major specialist paediatric hospital for Victoria offering a full range of clinical services, tertiary care and health promotion and prevention programs for children and adolescents.  Melbourne, Australia. His research interests are focused on the epidemiology, immunology, and pathogenesis of viral gastroenteritis viral gastroenteritis Intestinal flu Infectious disease A generic term for GE induced by viruses Clinical presentations 1. Epidemic VGE, most often caused by the Norwalk agent or Norwalk-like viruses Clinical N&V, diarrhea, abdominal pain, anorexia, .

Carl Kirkwood, * ([dagger][double dagger]) Nada Bogdanovic-Sakran, * Graeme Barnes,* ([dagger][double dagger]) and Ruth Bishop ([dagger][double dagger])

* Murdoch Childrens Research Institute, Parkville, Victoria, Australia; ([dagger]) Royal Children's Hospital, Victoria, Australia; and ([double dagger]) University of Melbourne
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In 2006, Times Higher Education Supplement ranked the University of Melbourne 22nd in the world. Because of the drop in ranking, University of Melbourne is currently behind four Asian universities - Beijing University,
, Victoria, Australia.

Address for correspondence: Carl Kirkwood, Department of Gastroenterology gastroenterology

Medical specialty dealing with digestion and the digestive system. In the 17th century Jan Baptista van Helmont conducted the first scientific studies in the field; William Beaumont published his own observations in 1833.
 and Clinical Nutrition Clinical nutrition
The use of diet and nutritional supplements as a way to enhance health prevent disease.

Mentioned in: Naturopathic Medicine
, Murdoch Children's Research Institute, Royal Children's Hospital, Flemington Road, Parkville, Victoria, Australia, 3052; fax: 613-9345-6240; email: carl.kirkwood@ mcri.edu.au

Use of trade names is for identification only and does not imply endorsement by the Public Health Service or by the U.S. Department of Health and Human Services Noun 1. Department of Health and Human Services - the United States federal department that administers all federal programs dealing with health and welfare; created in 1979
Health and Human Services, HHS
.
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