Rifampin- and multidrug-resistant tuberculosis in Russian civilians and prison inmates: dominance of the Beijing strain family. (Research).Consecutive patient cultures (140) of Mycobacterium tuberculosis Mycobacterium tuberculosis n. Tubercic bacillus. Mycobacterium tuberculosis were collected from five Russian civilian and prison tuberculosis laboratories and analyzed for rifampin rifampin (rĭfăm`pĭn), antibiotic used in the treatment of tuberculosis. It is also used to eliminate the meningococcus microorganism from carriers and to treat leprosy, or Hansen's disease. (rpoB) and isoniazid isoniazid (ī'sōnī`əzĭd), drug used to treat tuberculosis. Also known as isonicotinic acid hydrazide, isoniazid is the most effective antituberculosis drug currently available. resistance (inhA, katG, ahpC); transmission of Beijing family isolates; and the importance of prison and previous therapy in drug resistance. Rifampin, isoniazid, and multidrug resistance multidrug resistance, n the adaptation of tumor cells or infectious agents to resist chemotherapeutic agents. occurred in 58.2%, 51.6%, and 44.7% of cultures, respectively; 80% of prison cultures were rifampin resistant. Spoligotyping and variable number tandem repeat A variable number tandem repeats (VNTR) is a short nucleotide sequence ranging from 14 to 100 nucleotides long that is organized into clusters of tandem repeats, usually repeated in the range of between 4 and 40 times per occurrence. (VNTR VNTR Variable Number of Tandem Repeat(s) ) fingerprinting divided the isolates into 43 groups. Spoligotyping demonstrated that a high proportion (68.1%) of patients were infected with Beijing family strains and that most (69.1%) were rifampin resistant; the highest proportion (81.6%) occurred in prison. One VNTR subgroup (42435) comprised 68 (72.3%) of the Beijing isolates with a small number of IS6110 types; 50 (73.5%) were rifampin resistant. Rifampin-resistant Beijing isolates are dominant within the patient population, especially among prisoners, and threaten treatment programs. ********** The true extent of drug-resistant tuberculosis (TB) globally is unknown. Few national surveys are representative and validated by external laboratories (1,2). Accurate drug-susceptibility testing is difficult to do well. The quality of results can be further compromised if bacterial cultures originate from a selected population from which key groups, such as prisoners, have been omitted. Only limited susceptibility-testing data are available in those countries with the highest rates of TB such as India, Pakistan, Indonesia, China, and Russia. The spread of resistant isolates, especially multidrug-resistant strains that are resistant to at least isoniazid and rifampin, compromises both clinical efficacy and public health control measures. Patients with infectious multidrug-resistant cases continue to expectorate ex·pec·to·rate v. 1. To eject saliva, mucus, or other body fluid from the mouth; spit. 2. To clear out the chest and lungs by coughing up and spitting out matter. smear-positive sputum sputum /spu·tum/ (spu´tum) [L.] expectoration; matter ejected from the trachea, bronchi, and lungs through the mouth. sputum cruen´tum bloody sputum. longer than patients with drug-sensitive cases, increasing the probability of spread of infection. The transmission of highly drug-resistant strains has been documented within health-care institutions and prisons (3-6), and the spread of one highly resistant strain, W, has been documented from New York City New York City: see New York, city. New York City City (pop., 2000: 8,008,278), southeastern New York, at the mouth of the Hudson River. The largest city in the U.S. to other U.S. states and Puerto Rico Puerto Rico (pwār`tō rē`kō), island (2005 est. pop. 3,917,000), 3,508 sq mi (9,086 sq km), West Indies, c.1,000 mi (1,610 km) SE of Miami, Fla. (7). In Russia, TB incidence rates declined from the 1950s to the 1990s; the lowest incidence and mortality rates were recorded in 1991 (34.0/100 000 and 8.1/100 000, respectively). By 1999, these rates had risen to 85.2/100 000 and 20.0/100 000, respectively (8-10). The average age of TB patients has declined, reflecting high levels of recent transmission. Data on drug resistance for the whole of the Russian Federation Russian Federation: see Russia. are scarce; information comparable with international data have been reported by the World Health Organization from only 2 of the 89 oblasts (regions). In Ivanavo and Tomsk Oblasts, the prevalence of multidrug-resistant TB was 9.0% and 6.5%, respectively, in 1998-1999 (1,2). We initiated a pilot study in Samara, Russia This article is about the city in Russia. For the city in Iraq, see Samarra Samara (Russian: Сама́ра) (from 1935 to 1991—Kuybyshev ( , 1 of 89 oblasts to determine the following: the value of genotypic genotypic emanating from or pertaining to genotype. genotypic selection selection of breeding stock on the basis of known inherited characteristics. methods for identifying rifampin resistance and multidrug-resistant TB; the extent of rifampin and multiple-drug resistance within the civilian and prison systems; the extent to which this drug resistance was associated with dominant strains, such as those of the Beijing family, by using molecular DNA fingerprinting DNA fingerprinting or DNA profiling, any of several similar techniques for analyzing and comparing DNA from separate sources, used especially in law enforcement to identify suspects from hair, blood, semen, or other biological materials found at techniques; and whether drug resistance was associated with being a prisoner or with previous TB treatment. DNA fingerprinting that uses techniques such as restriction fragment length polymorphism restriction fragment length polymorphism n. Abbr. RFLP Intraspecies variations in the length of DNA fragments generated by the action of restriction enzymes and caused by mutations that alter the sites at which these enzymes act, changing (RFLP RFLP abbr. restriction fragment length polymorphism RFLP restriction fragment length polymorphism. RFLP ) based on IS6110 is the international standard for documenting transmission at the molecular level (11-14). Rapid techniques that use polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is (PCR PCR polymerase chain reaction. PCR abbr. polymerase chain reaction Polymerase chain reaction (PCR) ) amplification such as spacer-oligonucleotide typing (spoligotyping) (13-15) are usually less discriminating but may provide greater information on evolutionary origins and can be used when cultures are contaminated contaminated, v 1. made radioactive by the addition of small quantities of radioactive material. 2. made contaminated by adding infective or radiographic materials. 3. an infective surface or object. or nonviable nonviable /non·vi·a·ble/ (-vi´ah-b'l) not capable of living. non·vi·a·ble adj. Not capable of living or developing independently. Used especially of an embryo or fetus. . Spoligotyping is particularly valuable in defining strains belonging to the Beijing family as well as subspeciating strains of the Mycobacterium tuberculosis complex and does not require viable organisms. The Beijing family of isolates was first reported at a high rate in the Beijing area in 1995 (16) and less frequently in other parts of Asia such as Vietnam (17). These isolates may be associated with a higher occurrence of drug resistance; for instance, the highly drug-resistant W strain, first identified in New York New York, state, United States New York, Middle Atlantic state of the United States. It is bordered by Vermont, Massachusetts, Connecticut, and the Atlantic Ocean (E), New Jersey and Pennsylvania (S), Lakes Erie and Ontario and the Canadian province of , is a member of the Beijing family (7,18). These isolates have previously been frequently seen in convenience samples taken in the Russian Federation (18,19). In our study, isolates were collected from both the prison and civilian sectors at the same time in one region of the Russian Federation. These isolates were analyzed with molecular epidemiologic techniques (spoligotyping, variable number tandem repeat [VNTR], rapid epidemiological typing [RAPET], IS6110) to characterize the role of Beijing isolates and molecular genotypic methods to determine rifampin, isomazid, and multidrug resistance. Methods Population All cultures of M. tuberculosis M. tuberculosis, n the bacterium responsible for tuberculosis, generally a respiratory infection in man; nonrespiratory tuberculosis is considered an indicator disease for AIDS. See also tuberculosis. growing from February 1 to March 31, 2001, and May 14 to August 30, 2001, from five principal civilian and prison laboratories were analyzed: the Oblast oblast (ō`bläst, ŏ`–, Rus. ô`bləstyə) [Rus.,=region], administrative and territorial division in Russia, Ukraine, Belarus, and the former USSR. Regional TB Laboratory (oblast laboratory), the Samara Samara, river, Russia Samara (səmä`rə), river, c.360 mi (580 km) long, rising in the foothills of the S Urals, European Russia. It flows generally northwest, and joins the Volga River at Samara. City Dispensary dispensary: see clinic. Laboratory no 1 (city dispensary), Samara City Hospital no. 1 (city hospital), Novokuibyshevsk Novokuibyshevsk Town Laboratory (Novokuibyshevsk laboratory), and Prison Colony no. 19 (prison colony). A single culture from each patient was analyzed. These five laboratories cover 40% of the population of this region with TB and are representative of the TB caseload case·load n. The number of cases handled in a given period, as by an attorney or by a clinic or social services agency. caseload Noun in Samara Oblast Samara Oblast (Russian: Сама́рская о́бласть, Samarskaya oblast) is a federal subject of Russia (an oblast). . The oblast laboratory acts as the oblast reference/referral center; it has direct responsibility for rural areas, data collection for the oblast, and methodologic and organizational issues. The city receives cultures for drug-susceptibility testing from all five laboratories covering the outpatient caseload from the capital, Samara City; city hospital is the main inpatient facility. Novokuibyshevsk laboratory is the central TB laboratory; it serves a medium-sized industrial town. All patients with TB in the prison sector receive their inpatient within the prison colony; the prison laboratory analyzes all positive cultures from prisoners. Gender, date of birth or age, date of culture, phenotypic drug-susceptibility results, prison status, and history of previous treatment were determined by direct questioning of each person and examining the medical and laboratory notes. The study was approved and by the local drug-susceptibility testing and ethics steering committee steer·ing committee n. A committee that sets agendas and schedules of business, as for a legislative body or other assemblage. steering committee Noun . Drug Resistance All sputum specimens were cultured on Lowenstein-Jensen media; specimens were coded so that those performing the laboratory analysis were unaware of the epidemiologic data. Rifampin, isoniazid, and multidrug resistance were determined genotypically. DNA DNA: see nucleic acid. DNA or deoxyribonucleic acid One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes. was chloroform-extracted (20), and rifampin resistance was determined by using a nested PCR-amplification approach. The PCR product was reverse hybridized to probes immobilized on a membrane to detect mutations within the rpoB gene (21-23) (INNO-LiPA Rif.Tb; Innogenetics, Ghent, Belgium). With the use of biotinylated primers, an inhouse macroarray was developed and used to identify mutations associated with isoniazid resistance in the genes inhA, katG, and ahpC (24). Briefly, crude bacterial lysates were prepared from each isolate as described above (20). With the use of published M. tuberculosis sequences, digoxigenin-labeled PCR products were generated in a multiplex PCR amplifying four genomic sequences associated with resistance to isoniazid: 251- and 232-bp regions of katG, including codon codon: see nucleic acid. 315 and codon 463, a 241-bp region of aphC-oxyR; and a 265-bp region of the inhA locus, including the regulatory region. The sequences used to design the PCR primers were MTU (1) (Maximum Transmission Unit, Maximum Transfer Unit) The largest frame size that can be transmitted over the network. For example, an Ethernet MTU is 1,500 bytes. Messages longer than the MTU must be divided into smaller frames. 06270 for katG, MTU16243 for aphC, and MTU66801 for inhA. Primer sequences were: tomkp 1 = GGCCCCGAACCCGAGGCTGC; tomkp2 = AACGGGTCCGGGATGGTGCCG; tomkp3 = GCCGACGAG TTCGCCAAGGCC; tomkp4 = ACGACGCCGCCGCCCATGCG; tomap1 = CCGCCGATGAGAGCGGTGAGC; tomap2 = CCACTGCTTTGCCGCCACCGC; tomip1 = CACCCGCAGCCAGGGCCTCG; and tomip2 = CGATCCCCCGGTTT CCTCCGG. PCR was conducted in a 25-[micro]L reaction containing 2.5 [micro]L 10X reaction buffer (Qiagen, Crawley, UK), 0.5 [micro]L 2 mM dNTP (deoxynucleoside triphosphate triphosphate /tri·phos·phate/ (tri-fos´fat) a salt containing three phosphate radicals. tri·phos·phate n. A salt or ester containing three phosphate groups. ; Pharmacia, Little Chalfont Little Chalfont is a village in south east Buckinghamshire, United Kingdom. It is situated in a small group of villages called The Chalfonts which also consists of Chalfont St Giles and Chalfont St Peter. The villages are sandwiched between High Wycombe and Rickmansworth. , UK), 20 [micro]M each of the eight primers, 0.05 nmol dUTP (digoxigenin-labeled deoxyuridine triphosphate; Roche, Lewes, UK), 0.5 U of HotStartaq (Qiagen), and 1 [micro]L DNA extract. Cycling was conducted with a PE2400 thermal cycler The Thermal cycler (also known as a thermocycler, PCR machine or DNA amplifier) is a laboratory apparatus used for PCR. The device has a thermal block with holes where tubes with the PCR reaction mixtures can be inserted. (Applied Biosystems Applied Biosystems, Inc. (formerly NASDAQ: ABIO) is the original name of a pioneer biotechnology company founded in 1981 in Foster City, California, among the Silicon Valley cities of the southern San Francisco Bay Area. , Foster City, CA) programmed to hold 95[degrees]C for 15 min then 30 cycles of 15 sec at 95[degrees]C, 30 sec at 60[degrees]C, and 60 sec at 72[degrees]C. Eleven probes for the macroarray were diluted in water to 20 [micro]M and applied to printed cells on a numbered nylon membrane (Osmonics, Minnetonka, MN). The oligonucleotides were UV-crosslinked for 1 min in an Amplirad UV box (GRI GRI Graduate, Realtors Institute GRI Global Reporting Initiative GRI Gas Research Institute GRI Gallaudet Research Institute GRI General Rate Increase GRI Geoscience Research Institute (Loma Linda, CA) , Braintree, UK). Membranes were washed twice for 5 min in 0.5XSSC (1X SSC SSC Secondary School Certificate SSC Standard Systems Center (USAF) SSC State Services Commission (New Zealand) SSC Swedish Space Corporation SSC Salem State College (Massachusetts) is 0.15 M NaCl plus 0.015 M sodium citrate sodium citrate n. A white crystalline or granular compound, Na3C6H5O7·2H2O, used in photography and in medicine especially as an anticoagulant of blood stored for transfusion. ) and air-dried. The individual arrays were then separated and placed in a 2.5-mL minifuge tube. These were stored in darkness Adv. 1. in darkness - without light; "the river was sliding darkly under the mist" darkly at room temperature until use. A reverse hybridization hybridization /hy·brid·iza·tion/ (hi?brid-i-za´shun) 1. crossbreeding; the act or process of producing hybrids. 2. molecular hybridization 3. procedure was used to interrogate the macroarray, and hybridization was visualized by detecting the digoxigenin label colorimetrically according to according to prep. 1. As stated or indicated by; on the authority of: according to historians. 2. In keeping with: according to instructions. 3. the manufacturer's instructions (Roche). Extensive precautions (including the use of a three-room PCR suite, dedicated equipment, and multiple positive and negative controls) were taken to avoid cross-contamination. Molecular Epidemiology molecular epidemiology Molecular medicine An evolving field that combines the tools of standard epidemiology–case studies, questionnaires and monitoring of exposure to external factors with the tools of molecular biology–eg, restriction endonucleases, All cultures were analyzed by spoligotyping (15) and VNTR analysis (25) by using standard methods. For VNTR analysis, PCR-amplification was performed to identify the number of exact tandem repeats at five loci loci [L.] plural of locus. loci Plural of locus, see there , A to E. PCR products were electrophoresed on a sieving agarose agarose more highly purified form of agar with similar uses to agar and widely used in the separation of nucleic acid fragments. gel to determine the size of the product and compared against a standard to determine the number of exact tandem repeats at each locus. The result can be read as a numerical code that can be compared across large groups of isolates. RAPET was performed as described by Yates et al. (2). Fifty-five viable cultures were available for RFLP typing, targeting the IS6110 by using the internationally standardized protocol described by van Embden et al. (11). Results Drug Resistance One hundred forty .cultures were collected from the five sites, and genotypic analysis was performed in London by British and Russian scientists to determine rifampin and isoniazid resistance (Table 1). One hundred thirty-four cultures were successfully amplified (four cultures gave no amplification, and two cultures were identified as M. gordonae). Overall, 78 (58.2%) had mutations consistent with rifampin resistance. The Innolipa assay may underestimate true rifampin resistance by 5% to 7% (21,23). Detection of mutations, however, is indicative of true rifampin resistance in nearly all cases. Table 1 indicates the overall rate of rifampin resistance, the rate for each laboratory center, and the rate of molecular rifampin resistance as a fraction of each laboratory culture population. A macroarray was used to identify isoniazid resistance in 128 cultures that could be evaluated (amplification products were absent in 6 cultures successfully amplified for rpoB). When this method was used, 66 (51.6%) isolates were isoniazid resistant, and 62 were sensitive. This technique only detects approximately 75% to 90% true resistance so the rate of resistance is underestimated. Table 1 indicates the proportions of isoniazid-resistant cultures from each center; most came from the prison TB laboratory. Patient age and being a prisoner were significant risk factors for rifampin but not isoniazid resistance; previous treatment was a risk factor for resistance to both drugs (Table 2). Beijing Family and Molecular Epidemiology Of the 140 original samples, 138 produced a spoligotype profile. The samples were divided into 27 groups with 16 individual isolates and 10 clustered groups: 5 clusters containing 2 isolates, 2 with 3 isolates, 1 with 4 isolates, and 1 with 8 isolates. The 10th cluster accounted for 94 (68.1%) of the 138 cultures and comprised the characteristic Beijing strain (i.e., binding occurred only to the final nine spoligotype probes). When VNTR typing was used, 136 isolates (4 did not amplify) were divided into 25 groups: 13 were individual profiles with 4 clusters containing 2 isolates, 2 clusters of 3 isolates, 1 cluster of 4 isolates, 2 clusters of 5 isolates, 1 cluster of 9 isolates, 1 cluster of 13 isolates, and a dominant cluster of 73 strains. Combining spoligotyping and VNTR typing divided the 138 strains into 44 types in total. The proportion of Beijing isolates compared to the total number of cultures submitted by each site was calculated (Table 3). Both the total number and highest proportion of Beijing family cultures came from the prison and the oblast TB dispensary, which would be inclined to have complicated cases, including ones in former prisoners. Beijing Strains and Drug Resistance Overall, 65 (69.1%) of 94 Beijing family cultures were rifampin resistant (Table 4); the highest proportion of rifampin-resistant Beijing isolates (31/38 or 81.6%) occurred in the prison. Proportions at the other centers varied from 60.0% to 77.8%. High rates of rifampin resistance were seen in Beijing isolates from all centers. Overall, the proportion of Beijing isolates with rifampin resistance was over twice that of non-Beijing isolates (69.1% vs. 29.5%). The Beijing cluster of 94 isolates was subtyped by using VNTR (Table 5); 92 isolates were successfully analyzed, and no amplification occurred in 2 isolates. Overall, the 91 Beijing isolates were subdivided into 13 groups with 8 individual VNTR types and 2 different clusters of 2 isolates, 1 cluster each of 3 isolates and 1 of 9 isolates. The 13th cluster contained 68 isolates (VNTR 42435) or 72.3% of the total number of Beijing isolates seen. Most isolates within this VNTR type were rifampin resistant: 50 (73.5%) of 68 were resistant, 16 (23.5%) were sensitive, and 2 had equivocal EQUIVOCAL. What has a double sense. 2. In the construction of contracts, it is a general rule that when an expression may be taken in two senses, that shall be preferred which gives it effect. Vide Ambiguity; Construction; Interpretation; and Dig. results. Within this dominant VNTR type, the proportion of the type that was rifampin resistant by institution was calculated (Table 6). Within the prison and oblast dispensary 90% to 91% of the strains of the VNTR 42435 type were rifampin resistant. Of the 55 viable isolates that were RFLP-IS6110 fingerprinted, 23 were members of the main VNTR 42435 group (Figure). A small number of similar but distinct isolates were seen across the sites, including the W148 strain seen in Siberian prisons and elsewhere in the former Soviet Union (18). This observation was confirmed by RAPET typing (data not shown). [FIGURE OMITTED] Discussion This analysis is part of an ongoing program to develop the capacity to accurately determine drug resistance and monitor the epidemiology of drug-resistant TB in both civilian and prison sectors in Russia. For multidrug-resistant TB, cure rates are lowered and infectious patients remain sputum smear-positive longer, increasing the probability that others will be infected. As part of this program, we initiated a collaborative study in Samara, Russia, 1 of 89 regions or oblasts within the Russian Federation. In 2000, the new case rate in Samara was 87.6/100,000 (2,890 cases) in a population of 3,308,000 (including nonresidents and prisoners) with a death rate of 13.6 /100,000 (443 cases) (9,10). TB appears to be a problem in all Russian prisons including those in Samara, where the total number of TB patients at the time of the study was 1,800 cases (~34% of all registered TB patients in the region) (9,10). Because of an increasing number of intravenous drug users in the region, the problem of coinfection with HIV HIV (Human Immunodeficiency Virus), either of two closely related retroviruses that invade T-helper lymphocytes and are responsible for AIDS. There are two types of HIV: HIV-1 and HIV-2. HIV-1 is responsible for the vast majority of AIDS in the United States. is likely to become increasingly important as the number of HIV-positive persons increases (>12,000 HIV-infected persons were registered in Samara Region in May 2001). When molecular genotypic resistance analysis was used, 58.2% of cultures were rifampin resistant, and at least 51.6% were shown to be isoniazid resistant. Within this population, there were 123 molecular results for both rifampin and isoniazid, and 55 cases were definitely multidrug-resistant TB (55/123 or 44.7%); and 24 were possible cases (i.e., resistant to rifampin but sensitive to isoniazid with genotypic methods). These rates are high for both rifampin resistance and multidrug-resistant TB. Nevertheless, care must be taken in interpreting these results: they are likely to be overestimates since cultures were derived from new and chronic cases. Very high rates of rifampin resistance were seen in cultures drawn from the prison TB colony (80%), and 35 (79.5%) of 44 patients with known rifampin-resistant cases had been in prison before. Being a prisoner and patient age were risk factors for rifampin resistance (but not for isoniazid resistance). Previous treatment was a risk factor for both rifampin and isoniazid resistance. It remains unclear whether rifampin resistance is being introduced into the oblast prison from the pretrial pre·tri·al n. A proceeding held before an official trial, especially to clarify points of law and facts. adj. 1. Of or relating to a pretrial. 2. centers or developing within prison because of interrupted therapy caused by poor adherence to treatment adherence to treatment Compliance Therapeutics The following of a recommended course of treatment by taking all prescribed medications for the length of time necessary or release before treatment is completed. Previous treatment has been shown to be a risk factor for drug resistance (1,2). Molecular epidemiologic techniques can help monitor the spread of TB isolates. These techniques will be of particular value where drug resistance is common and where strains such as the Beijing family appear more commonly associated with the type of drug resistance likely to lead to therapeutic failure and prolonged infectivity. In this study, rapid PCR-based techniques such as spoligotyping were used; although less discriminating than IS6110-RFLP analysis, PCR techniques permitted safe, rapid analysis of a specific family of strains. Spoligotyping's ability to discriminate was greater than that of VNTR; in combination, the techniques divided the isolates into 43 groups, indicating the benefits of combining these systems. Spoligotyping demonstrated a high proportion (94 [68.1%] of the 138 cultures) of the characteristic Beijing family of strains, which has been previously associated with drug resistance. Some researchers have argued that the Beijing genotypes may have a selective advantage over other genotypes; BCG-induced immunologic protection may not protect against this strain, which would be an "escape mutant" (17). In that study in Vietnam, although the Beijing isolates were occurring more frequently among those vaccinated with BCG BCG bacille Calmette-Guérin. BCG abbr. 1. bacillus Calmette-Guérin 2. ballistocardiogram BCG, n.pr See bacille Calmette-Guórin. , this difference was not statistically significant (17). In that study, more Beijing isolates occurred in younger age groups, suggesting possible recent transmission; in our analysis, patients with Beijing isolates were younger than those with non-Beijing isolates (data not shown), which might support this conjecture. Other researchers have argued against any selective advantage, pointing out that Beijing isolates have spread widely in the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. , where BCG vaccination is not used (18). Nevertheless, BCG vaccination may accelerate the dominance of this family in regions once the strains have been introduced. The Russian Federation TB Service has a comprehensive program of BCG vaccination, which might create a selection pressure. Analysis using VNTR also demonstrated a dominant VNTR type containing 68 (72.3%) isolates (VNTR 42435) of the total number of Beijing isolates. A small number of similar but distinct isolates were seen on RFLP-IS6110 fingerprinting, including the W148 strain (17 band) seen in Siberian prisoners and elsewhere in the former Soviet Union (18). In 1998-2000, this strain was seen in 190 prisoners with multidrug-resistant TB in a prison in Tomsk, Western Siberia Western Siberia is a part of Siberia located between the Ural mountains and a watershed of the rivers Ob and Yenisei. Politically-administratively the territory of Western Siberia is divided into Kemerovo, Novosibirsk, Omsk, Tomsk, and Tümen Provinces, Hunty-Mansi Autonomous (18,19). None of the Samaran prisoners were from Siberia. Another probable reason for the successful expansion of the Beijing family is its association with multidrug-resistant TB; Beijing types such as W4 and "210" appear widespread in China but are fully susceptible to drugs (18). Low cure rates of smear-positive prisoners would lead to prolonged infectivity. The oblast prison, in particular, has a high proportion of Beijing isolates and a high rate of rifampin resistance, suggesting that the Beijing family is dominant there and accounts for a large proportion of resistance. Nevertheless, drug resistance per se cannot be the only explanation for the success with these isolates. The widespread population movements during the first half of the 20th century may have helped to distribute these isolates into new communities, which were then subsequently selected for by the introduction of a comprehensive BCG vaccination policy Vaccination policy refers to the policy a government practices in relation to vaccination. Vaccinations are voluntary in some countries and mandatory in some countries. Some governments pay all or part of the costs of vaccinations for vaccines in a national vaccination schedule. and by the later development of drug resistance. Concluding that Beijing family isolates have undiscovered advantages is also reasonable. In this study a large proportion of the Beijing isolates were of the same VNTR type (42435), but little is known of any differences in biologic function that might be related to different types. A recent study has demonstrated that the coding sequence cod·ing sequence n. See exon. Rv3710 (leuA) encodes the production of active alpha-isopropylmalate synthase synthase /syn·thase/ (-thas) a term used in the names of some enzymes, particularly lyases, when the synthetic aspect of the reaction is dominant or emphasized. syn·thase n. . Within the sequence lies the locus of VNTR 4155, and this may have a modifying role on the function of the enzyme (26). High-quality national or regional drug resistance surveys are needed in other parts of the Russian Federation. Such surveys would lead to a clearer understanding of the true level of drug resistance and in turn facilitate clinical management and permit better empirical treatment Empirical treatment Medical treatment that is given on the basis of the doctor's observations and experience. Mentioned in: Enterobacterial Infections strategies. Genotypic techniques are of value in determining rifampin resistance and likely multidrug-resistant TB. Although expensive compared to drug-susceptibility testing on solid media, genotyping techniques may be justified in populations with high levels of multidrug-resistant TB and high rates of concurrent HIV. Further analysis is required to confirm the spread of the Beijing family and determine whether it is imported into the prison and spread within the prison community.
Table 1. Molecular resistance to rifampin and isoniazid in
Mycobacterium tuberculosis isolates with proportional analysis by
center/laboratory, Samara Oblast, Russian Federation
No. of isolates
examined for No. of iso-
rifampin No. of rifam- niazid-resis-
resistance (n= pin-resistant tant isolates
Laboratory location 130) (a) isolates (%) (%) (b)
All 134 78 (58.2) 66 (-)
Prison TB colony 45 36 (80.0) 27 (60.0)
City dispensary 1 11 4 (36.4) 4 (36.4)
City hospital 1 34 18 (52.9) 14 (41.2)
Novokuibyshevsk
town laboratory 21 9 (42.9) 11 (52.4)
Oblast regional TB 19
laboratory 19 11 (57.9) 10 (52.6)
(a) Of 140 cultures, 134 results were produced, but only 130 were
available for results by center; 2 were M. gordonae, amplification
failed for 4 cultures, and center could not be definitively identified
for 4.
(b) Of 140 cultures, amplification products that could be evaluated
were obtained from 128 cultures.
Table 2. Patient factors associated with rifampin- and
isoniazid-resistant isolates (a)
Rifampin resistance Isoniazid resistance
Factor (n=78) (n=66)
Age p<0.05 (b) p>0.05
Known prisoner RR 1.68, (b) CI 1.29 RR 1.36, CI 0.97
to 2.18 to 1.89
Known previous RR 1.71, (b) CI 1.07 RR=2.04, (b) CI 1.01
treatment to 2.74 to 4.10
(a) RR, risk ratio; CI, confidence interval.
(b) Statistically significant
Table 3. Proportion of Beijing family in isolates of Mycobacterium
tuberculosis with distribution by center/laboratory, Samara Oblast,
Russian Federation
No. of isolates No. of Beijing
available family
Location for typing (n= 138) (a) isolates (%)
All 138 94 (b) (68.1)
Prison TB colony 49 40 (81.6)
City dispensary 1 11 6 (54.5)
City hospital 1 34 18 (52.9)
Novokuibyshevsk town 21 12 (57.1)
laboratory
Oblast regional TB 19 14 (73.7)
laboratory
(a) Of 140 cultures, 138 were available for spoligotyping (2 were not
multiresistant TB); however, 4 cultures could not be attributed to a
center.
(b) 138 cultures were evaluated, but 4 could not be attributed to a
specific center, i.e., 134 attributable cultures.
Table 4. Number and proportion of rifampin resistant isolates within
Beijing family at each center
No. of Beijing
No. of Beijing isolates resistant
Location isolates to rifampin (%)
All 94 65 (69.1)
Prison TB colony 40 31 (77.5)
City hospital 1 18 14 (77.8)
Novokuibyshevsk town
laboratory 12 7 (58.3)
Oblast regional TB
laboratory 14 10 (71.4)
No. of isolates % of rifampin-resistant
resistant to isolates that belong to
Location rifampin Beijing family
All 78 83.3
Prison TB colony 36 (a) 86.1
City hospital 1 18 77.8
Novokuibyshevsk town
laboratory 9 77.8
Oblast regional TB
laboratory 11 90.9
(a) Four gave no amplification; numbers too small to evaluate for city
dispensary 1.
Table 5. Variable number tandem repeat (VNTR) analysis of Beijing
isolates (n=91) and comparison with rifampin sensitivity
Total in each No. of rifampin
VNTR VNTR type resistant in each type
12435 3 3
12534 9 8
12535 1 1
22232 2 0
22435 1 0
32413 1 --
32433 1 0
32435 1 0
42234 1 0
42434 2 0
42435 68 50
42436 1 1
42532 1 1
No. of rifampin
VNTR sensitive in each type
12435 0
12534 1
12535 0
22232 2
22435 1
32413 -- (a)
32433 1
32435 1
42234 1
42434 2
42435 16(2 mixed=nonreadable) (a)
42436 0
42532 0
(a) In three, no amplification of rpoB gene or mixed reaction.
Table 6. Proportion of dominant variable number of tandem repeat (VNTR)
isolates of type 42435 known to be resistant or sensitive, by
institution
Proportion No. of VNTR type resistant
Location (n=68) to rifampin (%) (a)
Prison TB colony 30 27 (90)
City dispensary 5 3 (60)
City hospital 1 7 3 (42.9)
Novokuibyshevsk town
laboratory 12 7 (58.3)
Oblast regional TB
laboratory 11 10 (90.9)
Proportion of VNTR type
Location sensitive to rifampin (%)
Prison TB colony 3 (10)
City dispensary 2 (40)
City hospital 1 4 (57.1)
Novokuibyshevsk town
laboratory 5 (41.7)
Oblast regional TB
laboratory 1 (9.1)
(a) No rpoB amplification in one culture in this group.
Acknowledgments We thank Malcolm Yates and Heather Jebbari for microbiological and statistical advice, respectively. We also thank all the microbiologists and clinical experts in Russia who contributed to the program. The United Kingdom Department of International Development funded this program (CNTR CNTR Center CNTR Container CNTR Control CNTR Counter 00 0634). (1.) World Health Organization/International Union Against Tuberculosis. Antituberculosis drag resistance. Geneva Geneva, canton and city, Switzerland Geneva (jənē`və), Fr. Genève, canton (1990 pop. 373,019), 109 sq mi (282 sq km), SW Switzerland, surrounding the southwest tip of the Lake of Geneva. : The Organization; 1997. (2.) World Health Organization/International Union Against Tuberculosis. Antituberculosis drug antituberculosis drug Infectious disease Any drug–eg, isoniazid, rifampin, ethambutol, streptomycin, pyrazinamide, ethionamide, para-aminosalicylic acid, kanamycin, cycloserine, capreomycin, ciprofloxacin, amikacin, used to manage TB; multidrug-resistant resistance. Geneva: The Organization; 2000. (3.) Coronado VG, Beck-Sague CM, Hutton MD, Davis BJ, Nicholas P, Villareal C, et al. Transmission of drug-resistant Mycobacterium tuberculosis among persons with human immunodeficiency virus human immunodeficiency virus n. HIV. Human immunodeficiency virus (HIV) A transmissible retrovirus that causes AIDS in humans. infection in urban hospital: epidemiologic and restriction fragment length polymorphism analysis. J Infect Dis 1993;168:1052-5. (4.) Dooley SW, Jarvis WR, Marion W J, Snider DE. Multi-drug resistant tuberculosis. Ann Intern Med 1992;117:257-9. (5.) Edlin BR, Tokars JL, Grieco MH, Crawford JT, Williams J, Sordillo E, et al. An outbreak of multi-drug resistant tuberculosis among hospitalized patients with the acquired immunodeficiency syndrome acquired immunodeficiency syndrome, see AIDS. . N Engl J Med 1992;26:1514-21. (6.) Breathnach AS, De Ruiter A, Holdsworth GMC GMC See: Guaranteed Mortgage Certificate , Bateman NT, O'Sullivan DGM DGM Deutsche Gesellschaft für Muskelkranke DGM Discipline Global Mobile (record company) DGM Deputy General Manager DGM Devlet Güvenlik Mahkemesi DGM Digimon DGM Dirección General de Migración (Guatemala) , Rees PJ, et al. An outbreak of multi-drug resistant tuberculosis in a London teaching hospital. J Hosp Infect 1998;39:111-7. (7.) Agerton T, Valway SE, Blinkhorn RJ, Shilkret KL, Reves R, Schluter WW, et al. Spread of strain W, a highly drug-resistant strain of Mycobacterium tuberculosis, across the United States. Clin Infect Dis 1999;29:8592. (8.) Shilova MV, Dye C. The resurgence of TB in Russia. Philos Trans R Soc Lond B Biol Sci 2001;356:1069-75 (9.) Drobniewski FA, Balabanova Y. The diagnosis and management of multiple drug resistant tuberculosis at the beginning of the new millennium. Int J Infect Dis 2002;6:S21-31. (10.) Balabanova Y, Fedorin I, Melentyeiv A, Kuznetzov S, Drobniewski F. Tuberculosis in Samara, Central Russia 1999-2000 [Abstract P42]. In: Abstracts of the 29th European Society for Mycobacteriology, Berlin, Germany; 2001 July 2-6. Berlin: European Society for Mycobacteriology; 2001. (11.) van Embden JDA JDA Japan Defense Agency JDA Joint Development Agreement JDA Janne da Arc (band) JDA Joint Duty Assignment JDA Jerusalem Development Authority JDA Jovian Detention Authority (gaming) , Cave MD, Crawford JT, Dale JW, Eisenach KD, Gicquel B, et al. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 1993;31:406-9. (12.) van Soolingen D, de Haas de Haas as a surname can refer to:
(13.) Kremer K, van Soolingen D, Frothingham R, Haas WH, Hermans PW, Palittapongarnpim P, et al. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strain: interlaboratory study of discriminatory power and reproducibility. J Clin Microbiol 1999;37:2607-18. (14.) Diaz R, Kremer K, de Haas PE, Gomez RI, Marrero A, Valdivia JA, et al. Molecular epidemiology of tuberculosis in Cuba outside of Havana, July 1994-June 1995: utility of spoligotyping versus IS6110 restriction fragment length polymorphism. Int J Tuberc Lung Dis 1998;2:743-50. (15.) Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997;35:907-14. (16.) van Soolingen D, Qian L, de Haas PE, Douglas JT, Traore H, Portael F, et al. Predominance of a single genotype genotype (jēn`ətīp'): see genetics. genotype Genetic makeup of an organism. The genotype determines the hereditary potentials and limitations of an individual. of Mycobacterium tuberculosis in countries of East Asia East Asia A region of Asia coextensive with the Far East. East Asian adj. & n. . J Clin Microbiol 1995;33:3234-8. (17.) Ahn D, Borgdorff MW, Van LN, Lan NT, van Gorkom T, Kremer K, et al. Mycobacterium tuberculosis Beijing genotype emerging in Vietnam. Emerg Infect Dis 2000;6:302-5. (18.) Bifani PJ, Mathema B, Kurepina NE, Kreiswirth BN. Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains. Trends Microbiol 2002;10:45-52. (19.) Portaels F, Rigouts L, Bastian I. Addressing multidrug resistant tuberculosis in penitentiary penitentiary: see prison. hospitals and in the general population of the former Soviet Union. Int J Tuberc Lung Dis 1999;3:582-8. (20.) Yates MD, Drobniewski FA, Wilson SM. Evaluation of a rapid PCR-based epidemiological typing method for routine studies of Mycobacterium tuberculosis. J Clin Microbiol 2002;40:712-4. (21.) De Beenhouwer H, Lhiang Z, Jannes W, Mijs L, Machtelinckx L, Rossau R, et al. Rapid detection of rifampin resistance in sputum and biopsy specimens from tuberculosis patients by PCR and line probe assay. Tuber tuber, enlarged tip of a rhizome (underground stem) that stores food. Although much modified in structure, the tuber contains all the usual stem parts—bark, wood, pith, nodes, and internodes. Lung Dis 1995;76:425-30. (22.) Watterson SA, Wilson SM, Yates MD, Drobniewski FA. Comparison of three molecular assays for rapid detection of rifampin resistance in Mycobacterium tuberculosis. J Clin Microbiol 1998;36:1969-73. (23.) Drobniewski FA, Watterson SA, Wilson SM, Harris GS. A clinical, microbiological and economic analysis of a national UK service for the rapid molecular diagnosis of tuberculosis and rifampin resistance in Mycobacterium tuberculosis. J Med Microbiol 2000;49:271-8. (24.) Brown T, Maxwell O, Baker L, Drobniewski F, Anthony R, French G. Screening for mutations associated with INH INH abbr. isoniazid isoniazid (INH) Isotamine (CA), PMS Isoniazid (CA) Pharmacologic class: Isonicotinic acid hydrazide Therapeutic class: Antitubercular resistance in clinical Mycobacterium tuberculosis isolates [Abstract P60]. In: Abstracts of the UK Public Health Laboratory Service Annual Scientific Conference, 2001, Nov 2-7. London: Public Health Laboratory Service; 2001. (25.) Frothingham R, Meeker-O'Connell WE. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 1998;144:1189-96. (26.) Chanchaem W, Palittapongarnpim PA. A variable number of tandem repeats result in polymorphic polymorphic - polymorphism alpha-isopropylmalate synthase in Mycobacterium tuberculosis. Tuberculosis 2002;82:1-6. Francis Drobniewski, * Yanina Balabanova,* Michael Ruddy, * Laura Weldon, * Katya Jeltkova, ([dagger]) Timothy Brown Timothy Brown or Tim Brown may refer to:
n. A reference mark ( ) used in printing and writing. Also called diesis.Noun 1. ]) Elvira Elizarova, ([double dagger]) Alexander Melentyey, ([section]) Ebgeny Mutovkin, ([section]) Svetlana Zhakharova, ([double dagger]) and Ivan Fedorin ([double dagger]) * Guy's, King's and St Thomas' Medical School, King's College Hospital King's College Hospital is a primary care facility in the London Borough of Lambeth, referred to locally and by staff simply as "King's" or abbreviated internally to "KCH". It serves an inner city population of 700,000 in the London boroughs of Lambeth, Southwark and Lewisham. , London, United Kingdom; ([dagger]) Central Tuberculosis Research Institute, Moscow, Russian Federation; ([double dagger]) Samara Oblast Dispensary, Samara City, Russian Federation; and ([section]) Samara Prison TB Service, Samara City, Russian Federation Mr. Drobniewski is director and consultant medical microbiologist of the U.K. Public Health Laboratory Service Mycobacterium mycobacterium Any of the rod-shaped bacteria that make up the genus Mycobacterium. The two most important species cause tuberculosis and leprosy in humans; another species causes tuberculosis in both cattle and humans. Reference Unit, consultant physician in clinical tuberculosis at King's College Hospital, and professor of tuberculosis and mycobacterial diseases Mycobacterial diseases Diseases caused by mycobacteria, a diffuse group of acid-fast, rod-shaped bacteria in the genus Mycobacterium. The two most important species are M. tuberculosis (the cause of tuberculosis) and M. , University of London For most practical purposes, ranging from admission of students to negotiating funding from the government, the 19 constituent colleges are treated as individual universities. Within the university federation they are known as Recognised Bodies . His interests include all aspects of the diagnosis, epidemiology, and management of tuberculosis, particularly in the context of coinfection with HIV.References Address for correspondence: F. Drobniewski, Public Health Laboratory Service, Mycobacterium Reference Unit, Department of Microbiology and Infection, Guy's, King's and St Thomas' Medical School, King's College Hospital (Dulwich), East Dulwich Coordinates: East Dulwich is an area in the London Borough of Southwark. It forms the eastern one third of Dulwich, with Dulwich Village and West Dulwich to its south west making up the remaining two thirds. Grove, London SE22 8QF, UK; fax: 02073466477; e-mail: francis.drobniewski@kcl.ac.uk |
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