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Reaction intermediates in organic chemistry--the "big picture" (1).


Introduction

The development of physical organic chemistry Physical organic chemistry is the study of the interrelationships between structure and reactivity in organic molecules.[1] It can be seen as the study of organic chemistry using tools of physical chemistry such as chemical equilibrium, chemical kinetics,  concepts is inextricably in·ex·tri·ca·ble  
adj.
1.
a. So intricate or entangled as to make escape impossible: an inextricable maze; an inextricable web of deceit.

b.
 linked to the discovery and identification of reaction intermediates (1). Once chemists began amassing a library of chemical reactions that made it possible for one chemical structure to be transformed into another, thereby ushering in the vast and unlimited field of organic synthesis, it soon became apparent that patterns of reactivity among common structures emerged as a consequence of such transformations. The central questions of how and why particular products resulted in a given reaction from known substrate structures launched the field of mechanistic chemistry. These questions in turn evolved into others such as "how fast a particular reaction proceeds" and "how can one control the product outcome". The former launched an era of instrumentation development where various time-resolved techniques were invented to probe the temporal gap between substrate and product(s) of a given reaction. The latter question launched investigations into what parameters were important and to what degree in determining product outcomes. All of these questions were greatly influenced by ongoing parallel theoretical and experimental developments in the understanding, determination, and verification of chemical structure. Much of the success in structure elucidation and prediction and in time-resolved studies of reaction intermediates may be attributed to the birth of quantum mechanics and spectroscopy, which were the children of the happy marriage between physics and chemistry. Over time a certain "logic" to the understanding of organic reaction transformations emerged. Essentially the whole field of physical organic chemistry can be reduced to an algorithm that attempts to solve the inverse problem of determining the minimum possible set of elementary steps constituting a reaction mechanism that is consistent with experimental observations. It must also satisfy the fundamental condition that the sum of the elementary steps is the overall chemically balanced stoichiometric stoi·chi·om·e·try  
n.
1. Calculation of the quantities of reactants and products in a chemical reaction.

2. The quantitative relationship between reactants and products in a chemical reaction.
 equation as prescribed by Lavoisier's conservation of mass law. This set of elementary steps may or may not involve transient structures or reaction intermediates between the known substrate structures and identified product structures. Transient structures may be observed directly or inferred indirectly. This inverse problem is akin to the one in algebra of factoring a complex polynomial polynomial, mathematical expression which is a finite sum, each term being a constant times a product of one or more variables raised to powers. With only one variable the general form of a polynomial is a0xn+a  into its constituent factors, or in number theory of factoring a natural number into its prime factors. However, an important difference between the two related inverse problems is that in mechanistic chemistry the set of "factors" may not be unique and that an iron-clad deductive proof of mechanism cannot be done. The best one can hope for is consistency among various observations and techniques used. This effectively means that every postulated mechanism, or "set of factors", is only confirmed by experimental evidence and techniques that are available at the time of discovery, and hence is always open to later revision pending reexamination re·ex·am·ine also re-ex·am·ine  
tr.v. re·ex·am·ined, re·ex·am·in·ing, re·ex·am·ines
1. To examine again or anew; review.

2. Law To question (a witness) again after cross-examination.
 by new techniques. Laidler in a commentary on the use and misuse of the concept of rate-controlling step states that "reaction mechanism can never be established with a high degree of confidence" (2). In mathematics the analogous proof once confirmed is always true for all time.

This paper outlines key developments in physical organic chemistry and shows how they have impacted studies of reaction intermediates. The approach is to present the "big picture", tracing both ideas and people in the field so that the reader can get a sense of scale of what has been accomplished as well as take stock of where we are at today in the field and identify new fruitful areas of future research. Particular attention is paid to chronology of ideas, frequency of occurrence of reaction intermediates in the library of organic reactions used in organic synthesis, and the lexicon of scientific terms used in the language of physical organic chemistry. General logic decision trees are presented for the unique or near unique identification of reaction intermediates based on experimental techniques and common patterns of reactivity documented in the literature over the last century. In keeping with the theme of this special issue, contributions made by scientists working in laboratories at Canadian universities and at the National Research Council of Canada are noted throughout.

Chronology of concepts in physical organic chemistry

Figure 1 shows a histogram histogram
 or bar graph

Graph using vertical or horizontal bars whose lengths indicate quantities. Along with the pie chart, the histogram is the most common format for representing statistical data.
 of the timeline of discovery of key concepts in the field of physical organic chemistry and Table S 1 (Supplementary material)2 specifies them in a list along with the respective names of scientists who made these contributions. The celebrated ideas are named after particular scientists and the remainder are given special names. It is instructive to point out that when one begins learning about a field of science for the first time one can fast track their study by focusing on the "named things" in that field, since these represent the sign posts of what is important in the subject in question, especially ones that have stood the test of time, usage, and further experimentation by scientists at large. Ina number of instances, ideas have been attributed to scientists with established reputations despite them not being the original discoverers. Recent works (3) have documented this phenomenon of incorrect attributions of discovery, priority, and credit of chemical names and eponyms in organic and physical chemistry. Examples relevant to the present compilation (4) include: (i) the Le Chatelier's principle Noun 1. Le Chatelier's principle - the principle that if any change is imposed on a system that is in equilibrium then the system tends to adjust to a new equilibrium counteracting the change  of equilibria (1884) (5), which was discovered a few months earlier by Jacobus H. van't Hoff (1884) (6); (ii) the Arrhenius equation (1889) (7) also discovered earlier by van't Hoff (1884) (6); (iii) the steady-state approximation in chemical kinetics credited to Max Bodenstein in 1913, which was described earlier in that year by David Leonard Chapman and his student L.K. Underhill (8); (iv) the Michaelis-Menten mechanism of enzyme kinetics (9) (1913), which was first described earlier in 1892-1902 by Adrian J. Brown (10) and by Victor Henri (11) in 1901-1903 following work done in the laboratories of Wilhelm Ostwald in Leipzig and culminating in a doctoral thesis on the enzyme kinetics of diastase diastase (dī`əstās'): see amylase. ; (v) the Orton rearrangement (12) (1902) discovered earlier by Georg Bender (13) in 1866; and (vi) the Curtin-Hammett principle (14) (1954), which was originally formulated in 1907 by Solomon F. Acree (15). The last case has not been discussed before in the literature and deserves further comment here. No references to Acree's early work are mentioned in any of the well-known papers by Curtin, Hammett, and others including an extensive review of the topic by Seeman (16). Only two citations in the literature appear to mention Acme's contribution (17, 18). Hammett, in his book, refers to the principle as the "Curtin principle", but makes the following footnote: "Because Curtin is very generous in attributing credit, this is sometimes referred to as the Curtin-Hammett principle". Curtin, in turn, in his 1954 paper, published in ah obscure journal and likely read by few chemists, refers to a private communication from Hammett in 1950 attributing that the idea originated from Hammett in his comment: "It was pointed out by Professor L.P. Hammett in 1950 that if the transition state theory is accepted and if rotation between the various possible conformations of the starting material is very rapid compared to the rate of the reaction, the relative amounts of products formed from the two critical conformations are completely independent of the relative populations of the conformations and depend only upon the difference in free energy of the transition states." The chemical reaction referred to in Curtin's work is the E2-base-catalyzed elimination of halide halide: see halogen.  from 1,2-diphenyl-1-chloroethane to yield cis- and trans-stilbene (Scheme 1). Curiously, Curtin's paper does not present a precise mathematical relationship describing the phenomenon, but Hammett does in his book with the following equation given in eq. [1].

[1] d[trans-stilbene]/dt/d[cis-stilbene]/dt = [q.sup.#.sub.trans]/[q.sup.#.sub.cis]

where the qs refer to transition-state partition functions for the elimination steps, which in turn are related to the corresponding rate constants. However, Acree in 1907 studied the oxygen and nitrogen alkylations of tautomeric tautomeric

exhibiting, or capable of exhibiting, tautomerism.
 mixtures of 1-phenyl urazoles with diazomethane Diazomethane is the chemical compound CH2N2. In the pure form at room temperature, it is a yellow gas, but it is almost universally used as a solution in diethyl ether. It is one of the more common diazo compounds. It is also toxic and potentially explosive.  in ether solution (Scheme 2). He correctly concluded that "it is perfectly obvious that such reactions ... do not give us decisive evidence in regard to the relative amounts of the enol and keto forms in any given amide group in which the change from one tautomeric form to the other is very rapid in comparison with the reactions between the two forms and the alkylating reagents." Furthermore, Acree derived an expression, identical in form to the Winstein-Holness equation, for the observed second-order rate constant for the appearance of total product as a function of the relative populations of the urazole enol and keto forms nearly a half-century before Winstein and Holness's celebrated paper of 1955 (19). The thread of this principle was taken up again nearly 50 years later in 2003 (18) when an experimentally accessible efficiency parameter, defined only in terms of the four relevant rate constants (see eq. [2]), was introduced as a means to gauge the true efficiency of resolution of a chemical system obeying kinetic schemes as shown in Schemes 1 and 2 and having starting materials that are stereochemically related. This parameter was able to account for all experimentally observed cases between and including the limits of complete dynamic kinetic resolution (Acree-Curtin-Hammett conditions) and complete kinetic resolution (anti-Acree-Curtin-Hammett conditions).

[2] [[epsilon].sub.DKR DKR Danish Krone (currency of Denmark)
DKR Dark Knight Returns (comic)
DKR Diddy Kong Racing (video game)
DKR Dynamic Knowledge Repository
DKR Dynamic Kinetic Resolution
] = rv + u/rv + u +1

where r = [k.sub.3]/[k.sub.4], u = [k.sub.1]/[k.sub.3], and v = [k.sub.2]/[k.sub.3].

Before the notion of reaction intermediates was even conceived, mathematical laws of chemical kinetics (20) and the concept of catalysis catalysis

Modification (usually acceleration) of a chemical reaction rate by addition of a catalyst, which combines with the reactants but is ultimately regenerated so that its amount remains unchanged and the chemical equilibrium of the conditions of the reaction is not
 (21) were already established by Jons J. Berzelius, Wilhelm Ostwald, and Jacobus H. van't Hoff. Ludwig Wilhelmy carried out the first reported kinetics experiment in 1850 when he examined the acid-catalyzed hydrolysis hydrolysis (hīdrŏl`ĭsĭs), chemical reaction of a compound with water, usually resulting in the formation of one or more new compounds.  of cane sugar to invert sugar by polarimetry Polarimetry

The science of determining the polarization state of electromagnetic radiation (x-rays, light or radio waves). Radiation is said to be linearly polarized when the electric vector oscillates in only one plane.
 (22). The concept of the existence of reaction intermediates as chemical species of fleeting lifetimes originated in 1899 when Julius Stieglitz suggested the first mechanism of a chemical reaction when be examined the acid-catalyzed hydration hydration /hy·dra·tion/ (hi-dra´shun) the absorption of or combination with water.

hy·dra·tion
n.
1. The addition of water to a chemical molecule without hydrolysis.

2.
 of imidoethers via tetrahedral tet·ra·he·dral  
adj.
1. Of or relating to a tetrahedron.

2. Having four faces.



tet
 intermediates (Scheme 3) (23). James Norris in 1901 postulated the existence of carbocations, as it turns out the most extensively studied reaction intermediate class of all, when he examined the solvolysis sol·vol·y·sis  
n.
A chemical reaction in which the solute and solvent react to form a new compound.



[solv(ent) + -lysis.
 of tertiary alkyl alkyl /al·kyl/ (al´k'l) the monovalent radical formed when an aliphatic hydrocarbon loses one hydrogen atom.

al·kyl
n.
 halides in acidic media (Scheme 4) (24). Almost simultaneously Adolf von Baeyer
This article is about the Nobel Prize winning German chemist, for the founder of the pharmaceutical company Bayer, please see: Friedrich Bayer


Johann Friedrich Wilhelm Adolf von Baeyer (IPA:
 formulated the carbonium ion theory to account for the chemical behaviour and colour of triphenylmethane triphenylmethane /tri·phen·yl·meth·ane/ (-fen?il-meth´an) a substance from coal tar, the basis of various dyes and stains, including rosaniline, basic fuchsin, and gentian violet.  dyes such as fuchsine fuch·sin   also fuch·sine
n.
A dark green synthetic dyestuff, C20H19N3HCl, used to make a purple-red dye employed in coloring textiles and leather and as a bacterial stain. Also called magenta.
 and crystal violet (Scheme 5) (25). A prominent American scientist, Gilbert N. Lewis Gilbert Newton Lewis (October 23, 1875 - March 23, 1946) was a famous American physical chemist known for his 1902 Lewis dot structures, his 1916 paper "The Atom and the Molecule", which is the foundation of modern valence bond theory, developed in coordination with Irving , in the early part of the last century laid the foundation for a number of concepts that contributed greatly to the study of reaction mechanisms and reaction intermediates: octet rule in bonding (26), electrophilicity and nucleophilicity (27), inductive effect, (3) the prediction that radicals could be studied by magnetic methods, (4) Lewis acids and bases as electron acceptors and donors (27b), and the effect of resonance on electronic transitions (28).

Examination of the histogram in Fig. 1 shows the first "golden age" of physical organic chemistry in the 1930s and 1940s when simple reaction mechanisms were systematically categorized by type for the first time and new nomenclatures were introduced by Sir Christopher K. Ingold and his school such as Elcb (29), [S.sub.N]1 and [S.sub.N]2 (30), E1 and E2 (31), Al and A2 (32), and B1 and B2 (32). Up to that time about 200 named organic reactions were already known since Wohler's urea synthesis (33). The earliest attempts to understand reactivity in a systematic way were made by Sir Robert Robinson who formulated the familiar curly arrow notation to symbolize electron flow from electron donor groups to electron acceptor groups in an effort to determine patterns of reactivity in aromatic substitution reactions and to understand electronic effects of substituents on aromatic rings (34), and by Arnold F. Holleman who introduced the concept of directing groups in such reactions (35). Both Robinson and Ingold formulated the electronic theory of organic chemistry (36) though a bitter controversy over priority developed between them (37). The next major advances to be put forward during this period were by Johannes Bronsted (38), who introduced a linear double logarithmic logarithmic

pertaining to logarithm.


logarithmic relationship
when the logs of two variables plotted against each other create a straight line.
 correlation between rate constants and acid strength for acid-and base-catalyzed proton transfer reactions, by Louis Hammett (39), who introduced the general concept of linear free energy relationships and the quantitative partitioning of substituent substituent /sub·stit·u·ent/ (-stich´u-ent)
1. a substitute; especially an atom, radical, or group substituted for another in a compound.

2. of or pertaining to such an atom, radical, or group.
 effects via substituent constants, and by Henry Eyring (40), who introduced transition-state theory that linked measurable kinetic and thermodynamic ther·mo·dy·nam·ic
adj.
1. Characteristic of or resulting from the conversion of heat into other forms of energy.

2. Of or relating to thermodynamics.
 parameters to explain the dynamics of bond-making and bond-making processes in elementary steps of a reaction mechanism. Ina short time after the discovery of deuterium deuterium (dtēr`ēəm), isotope of hydrogen with mass no. 2. The deuterium nucleus, called a deuteron, contains one proton and one neutron.  by Harold Urey in 1932 (41) powerful techniques for probing the nature of such transition states, particularly those pertaining to the rate-determining step, emerged; namely the determination of isotope effects on rate constants and equilibrium constants (42), isotopic labelling experiments (43), and isotopic exchange experiments (44). All of these advances helped to rationalize chemical reactions and gave chemists the confidence to predict product outcomes for new reactions that had yet to be carried out.

In the second golden age of physical organic chemistry in the 1950s and 1960s, attention shifted to the United States where the following people figured prominently in further developing ideas in the field: Paul D. Bartlett (Harvard), Ronald Breslow (Columbia), William von Eggers Doering William von Eggers Doering (born 22 June 1917 in Fort Worth, Texas) is a Professor Emeritus at Harvard University and the former Chair of its Chemistry Department.

He is known in the field of organic chemistry for his work on quinine.
 (Columbia), George S. Hammond (Iowa State, Cal Tech), William P. Jencks (Brandeis), George A. Olah (USC An abbreviation for U.S. Code. ), C. Garner Swain (MIT MIT - Massachusetts Institute of Technology ), Robert W. Taft, Jr. (Pennsylvania State, UC Irvine), Frank H. Westheimer (Harvard), and Saul Winstein (UCLA UCLA University of California at Los Angeles
UCLA University Center for Learning Assistance (Illinois State University)
UCLA University of Carrollton, TX and Lower Addison, TX
). Though Canadian university students of chemistry have heard of Winstein's name in connection with several concepts in physical organic chemistry as attested by the many things named after him, very few, if any, know that he was born and raised in Montreal, Quebec before embarking on a doctoral degree at Cal Tech under Howard J. Lucas and launching his legendary career at UCLA (45).

In this time period the invention of time-resolved techniques (46) for probing fast reactions resulted in an explosion of research on monitoring the temporal behaviours of a wide variety of transients in various media whose lifetimes are in the submillisecond to picosecond One trillionth of a second. Pronounced "pee-co-second." See space/time and ohnosecond.

(unit) picosecond - 10^-12 seconds.
 time domains. This second golden age was characterized by technological advances in instrumentation, which made it possible to probe the earliest stages of chemical processes in a reaction mechanism. The strength of these methods led mainly by flash photolysis provided direct observation of reaction intermediates by various kinetic and spectroscopic spec·tro·scope  
n.
An instrument for producing and observing spectra.



spectro·scop
 means. Both kinetic decay (or growth) curves and spectra of transients could thus be obtained. The invention of lasers by physicists and other electronic equipment by engineers and skilled technicians to rapidly convert optical signals into electrical signals and to capture, digitize, and store kinetic waveforms for subsequent analysis helped to propel this technique to the forefront of research. Modern day physical organic chemists ought to therefore give these scientists the credit and respect that they so rightly deserve. The main condition for making the chemistry work by this method was the fact that targeted transients had to be generated by some photochemical reaction. Other techniques based on rapid mixing of solutions such as stopped-flow (46) or on applying sudden perturbations of temperature on solutions, commonly called the T-jump technique (46), also contributed to the study of reaction intermediates, but to a lesser extent. Virtually every kind of spectroscopy has been modified to become time-resolved in one way or another. Another useful technique pioneered by George C. Pimentel (47) to probe reaction intermediates is that of generating them in noble gas matrices at low temperatures and inferring their structure by IR, microwave, or UV spectroscopy in conjunction with theoretical calculations of their geometries at various levels of theory. IR spectroscopy is particularly useful since observed spectra can be directly compared with vibrational frequencies calculated from analyses of corresponding geometry optimized structures.

In recent years emphasis has shifted to the syntheses of thermodynamically ther·mo·dy·nam·ic  
adj.
1. Characteristic of or resulting from the conversion of heat into other forms of energy.

2. Of or relating to thermodynamics.
 and (or) kinetically stable analogs of reaction intermediates, essentially putting them in a bottle. This has lead to a number of chemical curiosities (see Table $6 in the Supplementary materiais). (2) Success can be achieved by judicious choice of substituents so as to impart stabilization by electronic and (or) steric effects or by generating them in exotic media that stabilize their structures such as "magic acid" (48), or by caging the intermediates in highly restricting media such as zeolite zeolite

Any member of a family of hydrated aluminosilicate minerals that have a framework structure enclosing interconnected cavities occupied by large metal cations (positively charged ions)—generally sodium, potassium, magnesium, calcium, and barium—and water
 supercages (49). Another new frontier that is being examined is the probing of organometallic organometallic /or·ga·no·me·tal·lic/ (-me-tal´ik) consisting of a metal combined with an organic radical, used particularly for a compound in which the metal is linked directly to a carbon atom.  intermediate structures in important carbon-carbon bond-forming reactions that utilize organometallic catalysts, particularly those containing palladium and other transition metals (50).

Table S2 (Supplementary material) (2) summarizes important coined terms used in physical organic chemistry and reaction intermediate studies. It is instructive to point out here that a very effective way for a scientist to carve out to make or get by cutting, or as if by cutting; to cut out.
- Shak.

See also: Carve
 their scientific niche and get attention for their work is to coin a particular word or phrase that over time will end up being synonymous with the discovery that they have made or the concept that they initiated and their persona. Perusal of this list shows some well-known coined name--scientist associations as well as some surprises, which even the seasoned practitioner in the field may learn about for the first time. The true measure of worth and recognition of an idea or concept is when other scientists use that idea or concept in their own work and even go further by building on top of it.

Chronology of discovery of reaction intermediates

Figures 2a and 2b show timelines of discovery of reaction intermediates and of stable analogs. Original references, including reviews, and schemes depicting reactions for all of these intermediates are compiled in the extensive database of Tables S5 and S6 (Supplementary material). (2) The histogram in Fig. 2a shows that the greatest number of intermediates were discovered during the second golden age of physical organic chemistry (mid-1940s to mid-1970s) that coincided with the advent of time-resolved techniques. Table 1 gives a detailed list of this chronology from Fremy's nitroxide radical salt (1845) to Thomas Tidwell's bisketenes (2000). Figure 2b shows the timeline of discovery of stable analogs of reaction intermediates, where it is observed that most of the advances have been made in the last 40 years particularly between 1995 and 2004. Figure 2c shows the correlation between first claim and first evidence of intermediate identification by experimental means. Not surprisingly the correlation is worse from the mid-19th century to the mid-20th century and improves markedly from about 1950 to the present day. During the early years, many intermediates were conjectured with little experimental evidence. Several years had to pass before their identities were finally confirmed, again largely thanks to technological advances that had to be developed in order for this to happen. Notable intermediates with extended time gaps between claim and discovery include: (i) the dication intermediate in the benzidine benzidine /ben·zi·dine/ (ben´zi-den) a carcinogen and toxin once widely used as a test for occult blood.

ben·zi·dine
n.
 rearrangement confirmed by George Olah in 1972, 109 years after A.W. Hofmann's discovery of the rearrangement reaction in 1863; (ii) oxirene in Wolff rearrangement confirmed by Imre G. Csizmadia and Otto P. Strausz in 1968, 98 years after Marcellin Berthelot's first claim in 1870, which was later proven false, for the oxidation of propyne in the presence of chromic acid; (iii) Wallach intermediate confirmed by George Olah in 1963 in magic acid, 83 years after Otto Wallach's discovery of the rearrangement of aromatic azo-N-oxides; (iv) ynols confirmed by Robin Hochstrasser, Jakob Wirz, and A. Jerry Kresge in 1989, 81 years after Hermann Staudinger's confirmation that the ketene ke·tene  
n.
A pungent, toxic, colorless gas, C2H2O, used chiefly as an acetylation agent.
 structure is not that of a hydroxyacetylene and 69 years after Charles D. Hurd's conjecture of the keteno-ynol tautomerism tautomerism

Existence of two or more chemical compounds that have the same chemical composition but different structures (isomers) and that convert easily from one to another.
; (v) ketyl radicais confirmed by Wilhelm Schlenk in 1911, 76 years after A. Laurent's observation of coloured solutions of aromatic ketones upon exposure to sodium metal in 1835; (vi) acetoxyl radicals confirmed in 1934, 76 years after B.C. Brodie's discovery of benzoyl peroxide in 1858; (vii) episulfonium ions confirmed by Reynold C. Fuson Reynold Clayton Fuson was born in Wakefield, Illinois, on June 1, 1895. He died August 4, 1979. [1][2]

Fuson attended Central Normal College in Danville, Indiana, where after one year in 1914 he was certified as a teacher.
 in 1940, 75 years after A. Cahours's synthesis of thiirane from dimethylsulfide and 1,2-dibromoethane in 1865; (viii) phenyl phenyl (fĕn`əl), C6H5, organic free radical or alkyl group derived from benzene by removing one hydrogen atom.  cation cation (kăt'ī`ən), atom or group of atoms carrying a positive charge. The charge results because there are more protons than electrons in the cation.  confirmed by Edward S. Lewis in 1954, 74 years after the discovery of the Sandmeyer reaction in 1884; (ix) nitrilium ions confirmed by F. Klages, Ivar Ugi, and A. Hassner between 1956 and 1966, 70-80 years after the discovery of the Beckmann rearrangement of 1886; (x) pyrylium ions confirmed by A. Balaban's synthesis of pyrylium salts in 1959, 58 years after Alfred Werner's initial observations in 1901; (xi) benzyl benzyl /ben·zyl/ (ben´zil) the hydrocarbon radical, C7H7.

benzyl benzoate  one of the active substances in peruvian and tolu balsams, and produced synthetically; applied topically as a scabicide.
 radicals confirmed by Morris S. Kharasch Morris Selig Kharasch (1895-1957) was a pioneering organic chemist best known for his work with free radical additions and polymerizations. He defined the peroxide effect, explaining how an anti-Markovnikov orientation could be achieved via free radical addition (1).  in 1937, 51 years after August Michaelis's synthesis of tribenzylarsine from benzyl chloride and arsenic trichloride in 1886; and (xii) carbenes confirmed by Hermann Staudinger in 1911 in the thermal and photochemical photochemical

in laser treatment, the laser light is absorbed and converted into chemical energy.
 Wolff rearrangement of diazoketones and by Jack Hine in 1950 in the haloform hydrolysis reaction under basic conditions 49 and 88 years, respectively, after A. Geuther's conjecture of their existence in the hydrolysis of chloroform chloroform (klôr`əfôrm) or trichloromethane (trī'klôrōmĕth`ān), CHCl3  in base in 1862.

Reaction intermediates in organic synthesis

Figure 3 illustrates the frequencies of occurrence of each of the major classes of intermediates in the library of organic reactions used in synthesis and Table S3 (Supplementary material) (2) lists the specific reactions corresponding to each intermediate type. Organic reactions may be classified succinctly according to the following types: carbon-carbon and non-carbon-carbon bond-forming reactions (includes additions, cyclizations, and couplings), condensations, multicomponent reactions, oxidations and reductions with respect to the substrate of interest, rearrangements, substitutions, and fragmentations or eliminations. The first four reaction types figure prominently in skeletal building, or aufbau type, reactions, which are the most important class of organic reaction in synthesis. The documentation of carbon-carbon bond-forming reactions dates back to the early part of the 19th century with Faraday's electrochemical synthesis of hydrocarbons from carbon monoxide, carbonic acid, and hydrogen in 1834 (51), Robert Kane's aldol condensation in 1838 (52), and Strecker's synthesis of [alpha]-cyanoamines from aldehydes, hydrocyanic acid, and ammonia in 1850 (53). The top five most frequently appearing intermediates in organic reactions based on a library of 435 reactions (4, 54) are: tetrahedral intermediates (21%), enols and enolates (12%), carbanions (6%), metallocomplexes (6%), and carbenium ions (5%).

The ease or difficulty in elucidating reaction mechanisms depends on the reaction type. Tetrahedral intermediates, enols, enolates, and carbanions figure heavily in skeletal building reactions. It is fairly straightforward to write out reasonable reaction mechanisms for organic reactions involving these species in carbon-carbon and non-carbon-carbon bond-forming reactions, condensations, and multicomponent reactions. Historically, substitution reactions and their associated mechanistic types (SN1, SN2, E1, E1cb, E2, and electrophilic and nucleophilic aromatic), as noted previously, are the best characterized. The elucidation of rearrangement reactions, on the other hand, is less straightforward and is strongly connected to the identification of specific reaction intermediates. Studies of carbenium ions and other cationic cationic

having qualities dependent on having free cations available.


cationic detergents
are wetting agents that disrupt or damage cell membranes, denature proteins and inactivate enzymes.
 intermediates in acid-catalyzed reactions are particularly noteworthy in this regard such as the Wagner-Meerwein rearrangement. Generally, this class of reactions is the most challenging to elucidate and are often the subject of mechanistic puzzles. Labelling experiments are particularly helpful in decoding molecular reorganization processes. Oxidation and reduction oxidation and reduction, complementary chemical reactions characterized by the loss or gain, respectively, of one or more electrons by an atom or molecule. Originally the term oxidation  reactions with respect to the substrate of interest are the least well-characterized mechanistically in terms of acquiring spectroscopic and kinetic data. This may be due to the fact that many of them occur in heterogeneous media, involve metals or organometallic species, or are surface reactions where traditional methods employed successfully in homogeneous phases may not be adequate to handle the complexities of kinetic treatments, in particular. It is probably in this class of reactions where mechanistic chemists may find it fruitful to explore uncharted territory, particularly with respect to inventing improved redox redox (rē`dŏks): see oxidation and reduction.  catalysts for industrial processes and understanding redox cascades in biological processes such as photosynthesis and nitrogen fixation that involve metal-containing enzymes. However, organometallic esters have been reasonably characterized for simple oxidation reactions such as the Criegee glycol cleavage (cyclic lead ester), Hooker oxidation (cyclic manganate man·ga·nate  
n.
A salt containing manganese in its anion, especially a salt containing the MnO4 radical.



[mangan(ese) + -ate2.]

Noun 1.
 ester), Jones oxidation (chromate chromate /chro·mate/ (kro´mat) any salt of chromic acid.

chro·mate
n.
A salt of chromic acid.



chromate

any salt of chromic acid.
 ester), Lemieux-Johnson oxidation of olefins to 1,2-diols (cyclic osmate ester), Lemieux-Johnson oxidative cleavage of olefins to aldehydes (cyclic osmate ester), permanganate permanganate /per·man·ga·nate/ (per-mang´gah-nat) a salt containing the MnO4- ion.

per·man·ga·nate
n.
Any of the salts of permanganic acid, all of which are strong oxidizing agents.
 oxidation of olefins to 1,2-diols (cyclic manganate ester), Sarett procedure (chromate ester), Sharpless oxyamination (cyclic osmate ester and cyclic osmate amide), and Sharpless-Jacobsen dihydroxylation (cyclic osmate esters). Ozonides are also well-documented as intermediates in the Harries ozonolysis reaction. Browsing through Table S3 (2) shows that reduction reactions may involve carbanion car·ban·i·on  
n.
An anion in which carbon carries a negative charge and an unshared pair of electrons.
, carbene Not to be confused with carbine.
In chemistry, a carbene is a highly reactive organic molecule with a divalent carbon atom with only six valence electrons and the general formula: R1R2C: (two substituents and two electrons).
, radical, radical anions, or ylide intermediates. It is interesting to note that the Clemmensen reduction of ketone ketone (kē`tōn), any of a class of organic compounds that contain the carbonyl group, C=O, and in which the carbonyl group is bonded only to carbon atoms.  groups to methylene methylene /meth·y·lene/ (meth?i-len) the bivalent hydrocarbon radical —CH2— or CH2dbond.

meth·yl·ene
n.
 groups in acidic media potentially proceeds by the greatest number of intermediate types of any reaction. As shown in Scheme 6, the four-electron redox reaction can be postulated to proceed successively via radical anion anion (ăn`ī'ən), atom or group of atoms carrying a negative charge. The charge results because there are more electrons than protons in the anion. , ketyl radical, carbene, carbenium ion, carbon centered radical, and finally carbanion intermediates. Table S4 (Supplementary material) (2) lists those named organic reactions that do not proceed via reaction intermediates and thus occur by concerted processes involving either asynchronous Refers to events that are not synchronized, or coordinated, in time. The following are considered asynchronous operations. The interval between transmitting A and B is not the same as between B and C. The ability to initiate a transmission at either end.  or synchronous bond-forming and bond-breaking processes in the transition states.

Identification of reaction intermediates--The underlying logic of it all

In determining the identity of a reaction intermediate in a thermal or photochemical transformation there are a number of steps that need to be followed. The first thing is to precisely determine the structures of the starting substrate structures as well as the final product structures, including their distribution. At this stage, comparison of product and reactant structures can lead to educated guesses as to the possible structures of transient species. This kind of analysis was the basis of understanding rearrangement reactions such as the Wagner-Meerwein rearrangement where carbocationic intermediates were postulated, or the Wolff and Curtius rearrangements where carbene and nitrene intermediates were conjectured. Julius Stieglitz, James F. Norris, and Frank C. Whitmore Frank C. Whitmore (1887-1947), nicknamed "Rocky", was a prominent chemist who submitted significant evidence for the existence of carbocation mechanisms in organic chemistry.

Frank C. Whitmore, who published as F.C.
 were the first to successfully use this technique in predicting likely transient species in such reactions (23, 24, 55). Astute chemists know that often it is the minor products of a reaction that give the most important clues as to the kind of mechanism that may be operative and the speciation speciation

Formation of new and distinct species, whereby a single evolutionary line splits into two or more genetically independent ones. One of the fundamental processes of evolution, speciation may occur in many ways.
 of the suspect transient. Examples include liberated gases such as nitrogen (eliminated in Bamford-Stevens oxidation of hydrazones via carbenes, Curtius rearrangement via nitrenes, cyclopropanation with diazomethane via carbenes, diimide reduction via radicals, 1,3-dipolar additions of 1,2-diazoles to olefins, Gatterman reaction via arylium ions or aryl ar·yl
n.
An organic radical derived from an aromatic compound by the removal of one hydrogen atom.
 radicals, Gomberg-Bachmann and Meerwein arylation reactions via aryl cations, McFadyen-Stevens reaction via nitrenes, radical dehalogenation via radicals, Sandmeyer reaction via arylium ions or aryl radicals, Schiemann reaction via arylium ions or aryl radicals, Schmidt rearrangement via nitrenes, Staudinger reaction via nitrenes, Tiffeneau-Demjanov reaction via ring expansion, von Richter reaction The von Richter reaction is the chemical reaction of aromatic nitro compounds with potassium cyanide giving carboxylation ortho to the position of the former nitro group.[1][2]

References
 via carbanions, Wharton reaction via tetrahedral intermediates, Wolff rearrangement reaction via carbenes, and Wolff-Kishner reduction via carbanions, iminium ions, and tetrahedral intermediates), hydrogen (eliminated in Chichibabin reaction via carbanions, Corey-Bakshi-Shibata reduction via ylides, Corey-Chaykovsky epoxidation reaction via carbanions, Gribble grib·ble  
n.
Any of several small wood-boring marine isopod crustaceans of the genus Limnoria, especially L. lignorum, which often damage underwater wooden structures.
 reduction of diarylketones via tetrahedral intermediates, Wadsworth-Horner-Emmons reaction via carbanions, and Williamson ether synthesis The Williamson ether synthesis was developed by Alexander Williamson in 1850. Typically it involves the reaction of an alkoxide ion with a primary alkyl halide via an SN2 reaction.  via alkoxides), carbon dioxide (decarboxylations in Borodin-Hunsdiecker reaction via acetoxy radicals, Corey-Winter reaction via carbenes and ylides, Dakin-West reaction via tetrahedral intermediates, diimide reduction via radicals, Eschweiler-Clarke reaction via iminium ions, Hofmann-Martius rearrangement via nitrenes, Hooker oxidation via enols, Kochi reaction via carbenium ions, Leuckart reaction via tetrahedral intermediates, Lossen rearrangement via nitrenes, malonates, and acetoacetates via tetrahedral intermediates, Perkin rearrangement via tetrahedral intermediates, and Schmidt rearrangement via nitrenes), ethylene (eliminated in ring-closing metathesis reactions via organometallic intermediates), hydrogen sulfide (eliminated in Willgerodt-Kindler reaction via tetrahedral intermediates and thiirenium ions), and sulfur dioxide (Ramberg-Backland rearrangement via carbanions). Products arising from recombination recombination, process of "shuffling" of genes by which new combinations can be generated. In recombination through sexual reproduction, the offspring's complete set of genes differs from that of either parent, being rather a combination of genes from both parents.  of fragments generated in a reaction are a signature of radicaloid processes such as 1,2-diphenylethane (dibenzyl), which arises by recombination of benzyl radicals.

There are a number of techniques that can be used to probe or interrogate a reaction between reactants and products. These fall into two main categories: indirect or direct methods. Under indirect methods we have: trapping or quenching kinetic and spectroscopic experiments, which introduce one or more chemical species that react noncompetitively or competitively with the generated intermediate, isolation of the trapped products from the quenching method, isotopic labelling studies, and pH--rate profile behaviour. Under direct methods we have: kinetic and spectroscopic time-resolved techniques that estimate the lifetimes and spectral properties of transient species, direct isolation or "freezing out" of intermediates in restricting media, and direct synthesis of thermodynamically and (or) kinetically stable analogs.

In the quenching technique one aims to use probe molecules that are unique or near-unique traps for the particular transient investigated, rather than promiscuous ones. One key assumption that needs to be experimentally verified is that the trapping agents should not undergo secondary reactions under the prescribed experimental conditions. Examples of specific traps are azide azide

inhibitor of cytochrome c oxidase (or complex IV) of the respiratory electron-transfer chain.
 ion for carbenium ions; whereas, examples of promiscuous traps are oxygen that can quench quench,
v to cool a hot object rapidly by plunging it into water or oil.


quench

to put out, extinguish, or suppress; to cool (as hot metal) by immersing in water.
 excited state triplet triplet /trip·let/ (trip´let)
1. one of three offspring produced at one birth.

2. a combination of three objects or entities acting together, as three lenses or three nucleotides.

3.
 species by triplet-triplet annhilation and carbon centred radicals to give peroxy radicals, and pyridine pyridine (pĭr`ĭdēn) or azine (ăz`ēn), C5H5N, colorless, flammable, toxic liquid with a putrid odor. It melts at −42°C; and boils at 115.5°C;.  that can quench ketenes to ketene zwitterions and carbenes to pyridine-carbene ylides. However, specific quenching may not be so simple and often the strategy is to use a combination of trapping agents and then to look for consistency in their kinetic and spectroscopic behaviour. If an intermediate is suspected to be electrophilic then nucleophilic traps are selected, as in the case of cationic transients that are quenched by nucleophilic species with electron-donating groups, lone pairs of electrons, or negatively charged atoms. If an intermediate is suspected to be nucleophilic then electrophilic traps are chosen, as in the case of anionic an·i·on  
n.
A negatively charged ion, especially the ion that migrates to an anode in electrolysis.



[From Greek, neuter present participle of anienai, to go up : ana-, ana-
 transients that are quenched by electrophilic species with electron-withdrawing groups, electron-accepting centres, or positively charged atoms. Table 2 summarizes sets of quenchers that have been used to identify various reaction intermediate families. Sometimes trapping agents lead to secondary transients that themselves degrade. The probe technique to "see" spectroscopically invisible transients is particularly important here (56). For example, carbenes absorbing in the UV may be quenched by pyridine to yield coloured carbene ylides absorbing in the visible range, which in turn may be trapped with dimethoxycarbonylacetylene (Scheme 7). Transient ketenes may be first quenched by pyridine to produce ketene zwitterions. These adducts can conceivably undergo further trapping reactions with 1,4-dipolarophiles by analogy with pyridine carbene ylides that can be trapped with 1,3-dipolarophiles (Scheme 8) (57).

Isolation of the final products from quenching experiments can further corroborate To support or enhance the believability of a fact or assertion by the presentation of additional information that confirms the truthfulness of the item.

The testimony of a witness is corroborated if subsequent evidence, such as a coroner's report or the testimony of other
 structural assignments of the investigated transient species. Stereochemical aspects are often very helpful in this regard. Notable examples are the establishment of the connection between the Walden inversion rule and the [S.sub.N]2 mechanism (58) and the trapping of singlet vs. triplet carbenes by olefins to give cyclopropane cyclopropane, C3H6, a gaseous hydrocarbon. It is a cyclic alkane, its three carbon atoms being joined together in a ring. The angle between successive carbon-carbon bonds in the ring is only 60°, much less than that between successive  derivatives (59). The trapping of transients to yield stable isolable i·so·la·ble
adj.
Possible to isolate.
 compounds such as transition-metal complexes has also been of great value. Ernst O. Fischer's pioneering work in trapping carbenes, carbynes, and ketenes using tungsten, molybdenum, and chromium carbonyls are good examples of this technique (60).

Deuterium and C13 labelling studies, including the measurement of kinetic primary and secondary isotope effects, can inform which bonds are being made and broken in particular steps in the proposed mechanism, particularly the rate-determining step. Scrambling of isotopic labels usually infers the presence of a symmetrical intermediate. For example, oxirenes have been inferred as possible intermediates in the Wolff rearrangement of diazoketones to carbenes and then ketenes (61), and thiirenium ions have been inferred in the cyclization-elimination reaction of thioalkoxy substituted vinyl sulfonates (62). If it is suspected that the transient structure has ionizable groups then the acquisition of pH--rate profiles are particularly useful, since their shapes reveal important kinetic and thermodynamic parameters. Enols are particularly noteworthy. Also, the form of buffer catalysis gires insights about whether general or specific acid- or base-catalysis mechanisms are operative. An important point to keep in mind is that such experiments need to be conducted in aqueous media so that meaningful kinetic and thermodynamic parameters can be determined, as well as their dependencies on acid or base concentration. Also, for meaningful comparisons to be made between related chemical structures of any reaction intermediate class, it is best to conduct experiments in a uniform medium under a standard set of conditions. For example, aqueous solution at an ionic strength of 0.1 mol/L NaCl or NaCl[O.sub.4] at 25[degrees]C and 1 atm (1 atm = 101.325 kPa).

The determination of rate laws for the dependence of observed rate constants on concentrations of various species gives important information about the molecularity and structure of the rate-limiting transition state. Limiting or asymptotic approximations with respect to relative rate constant magnitudes and (or) concentrations of catalyst, quencher, or reactant such as preequilibrium and steady-state approximations are especially useful in verifying rate law behaviours under simplified experimental conditions.

Direct methods are the most convincing in identifying transients, but comparisons of results with known reactions and with other indirect methods previously described are still necessary to obtain a complete story. Time-resolved techniques such as flash photolysis, pulse radiolysis ra·di·ol·y·sis
n. pl ra·di·ol·y·ses
Molecular decomposition of a substance as a result of radiation.



ra
, stopped-flow, and temperature jump allow both detailed kinetic and spectroscopic measurements to be made. In flash photolysis, pulse radiolysis, and temperature-jump techniques, chemical systems are suddenly perturbed per·turb  
tr.v. per·turbed, per·turb·ing, per·turbs
1. To disturb greatly; make uneasy or anxious.

2. To throw into great confusion.

3.
 by excitation pulses of light, electron beams, or heat, which results in the generation of the transient in solution. The stopped-flow technique involves rapid mixing of two solutions containing substrates. A thermal reaction proceeds giving rise to corresponding transient species once these solutions come into contact with one another. In all cases, once a transient is generated the optical density of the reaction solution is altered and the temporal dependence of this optical density change is monitored. The reaction solution is said to be "probed" by some spectroscopic means such as by UV--vis, IR, EPR EPR Electron Paramagnetic Resonance
EPR Extended Producer Responsibility
EPR Electronic Patient Record(s)
EPR Emergency Preparedness and Response (US DHS)
EPR Endpoint Reference
EPR Ethylene-Propylene Rubber
, or NMR NMR: see magnetic resonance. . Characteristic kinetic behaviours with respect to quenching experiments, such as magnitude of quenching rate constants, order of reaction, dependence of observed rate constants on catalyst concentration, and mathematical forms of the disappearance of substrate and appearance of product as functions of time, and characteristic spectroscopic absorption markers, such as unique absorption bands, help to eliminate false candidates and narrow down the possibilities. The key condition to "catch" or view a transient is that the time resolution of the apparatus used must be smaller than the expected lifetime of the transient. Time resolutions range from several seconds in standard UV spectrophotometric devices to picoseconds in laser flash photolysis apparatuses. Obvious chemical constraints in using these techniques are the kinds of chemical reactions and precursors that are available to generate the appropriate intermediates. Photoreactions are necessary if flash photolysis is to be used and thermal reactions are necessary if T-jump or stopped flow is to be used. Often the choice of precursor is dictated by the suspected identity of the transient. Again, the library of known reactions is of great value in this selection.

Generation of intermediates in highly restricting media such as low-temperature noble gas matrices or organic glasses, or at room temperature in zeolites where the possibility of further reaction is severely impeded is also a powerful way of directly viewing transient species. Transients may be generated photochemically from appropriate precursors that are themselves trapped in a restricting matrix, or by flash vacuum pyrolysis py·rol·y·sis
n.
Decomposition or transformation of a chemical compound caused by heat.


pyrolysis (pīrol´isis),
n
 of a substrate in the gas phase where the target intermediate is first generated and then subsequently trapped at 10 K in an argon argon (är`gŏn) [Gr.,=inert], gaseous chemical element; symbol Ar; at. no. 18; at. wt. 39.948; m.p. −189.2°C;; b.p. −185.7°C;; density 1.784 grams per liter at STP; valence 0.  matrix deposited on a KBr window using a cryostat cryostat /cryo·stat/ (kri´o-stat)
1. a device by which temperature can be maintained at a very low level.

2. in pathology and histology, a chamber containing a microtome for sectioning frozen tissue.
 apparatus. Once trapped, the spectrum of a transient may be obtained and its structure inferred from difference spectra in which the background spectrum of the matrix medium is subtracted out. Often such studies are done in conjunction with computational studies to determine their theoretically predicted IR, UV, or microwave spectra and to compare these with the experimental ones. Matching of spectra constitutes corroborative cor·rob·o·rate  
tr.v. cor·rob·o·rat·ed, cor·rob·o·rat·ing, cor·rob·o·rates
To strengthen or support with other evidence; make more certain. See Synonyms at confirm.
 evidence for transient identification.

The most direct method is the synthesis of a thermodynamically stable analog, effectively bottling the intermediate as a bona fide isolable compound. This allows the complete characterization of the structure by conventional means such as boiling point, melting point, [sup.1]H and [sup.13]C NMR, IR, and UV spectroscopy, mass spectrometry, and X-ray crystallography. To make this strategy work, all available knowledge gained from previous methodologies is used. Thermodynamic stability is influenced by such factors as increased steric steric /ste·ric/ (ster´ik) pertaining to the arrangement of atoms in space; pertaining to stereochemistry.

ster·ic or ster·i·cal
n.
 crowding, counterbalancing electronic effects by judicious choice of substituents, and topology. Highly stable analogs of reaction intermediates as summarized in Table S6 (Supplementary material) (2) have been found by using one or more of these strategies. Often such chemical curiosities have been discovered by accident rather than by design.

Like most of the thinking done in an empirical science, chemistry relies heavily on comparing new results with the growing empirically derived database or library of past results. The common paradigm is to select special reactions or conditions as "standards", which can be used as yardsticks or comparators for other reactions or conditions. (5) This, for example, is the basis of the linear free energy relationship analysis and compilation of various substituent constants advanced by Hammett, Taft, and others. Substituent effect experiments fine-tune our understanding of the nature of the rate-determining step, which involves a key intermediate. Such questions as charge distribution in the rate-determining transition state, its position along the reaction coordinate relative to reactants and immediate products, and degree of proton transfer, if applicable, may be answered. Also, changes in curvature of Bronsted and Hammett plots and pH--rate profiles may be interpreted as changes in rate-determining step occurring if downward bends (concave down curvature) are observed or as changes in reaction mechanism occurring if upward bends (concave up curvature) are observed.

Naturally, as the database of knowledge increases, comparisons between new and known reactions become more reliable and hence one's guesses as to the identity of reaction intermediates improve markedly. In terms of the decision trees shown in Figs. 4a-4d, one need not start at the top and work their way down, but begin somewhere in the middle and quickly gravitate to the likely transient structure in a few iterations of experimentation.

If one knew nothing about a suspected transient at all or had no precedent of analogous reactions to go by in the identification process, then the multiplicity assignment of the transient becomes the uppermost question in the decision tree. Overall, the key concept is to corroborate evidence from various methods so that a consistent picture is built for transient identification, keeping in mind the caveat given in the introduction that definitive proof is not possible, but corroborative proof is. It may be argued that corroborative proof may evolve into definitive proof the longer the evidence stands the test of time and further experimentation by ever more techniques. Corroboration of experimental results with theoretical computational studies of possible stable geometries and energetics en·er·get·ics  
n. (used with a sing. verb)
1. The study of the flow and transformation of energy.

2. The flow and transformation of energy within a particular system.
 of chemical species from reactants to products, including intervening intermediate structures with associated transition states in each step, is also a very useful strategy. The aim is to map out a complete energy reaction coordinate profile or surface showing the number of sequential elementary steps, the number of relevant transition states, the number of possible intermediates, the structures of all chemical species, and the energy differences between one structure and the next. Relationships such as the ones shown in eq. [3] become useful. The determination of reaction energy barriers and relative thermodynamic stabilities of reactants and products is important in identifying kinetic and thermodynamic control processes, particularly when they operate synergistically syn·er·gis·tic  
adj.
1. Of or relating to synergy: a synergistic effect.

2. Producing or capable of producing synergy: synergistic drugs.

3.
 or antagonistically (see Fig. 5). Complimentary agreement between experiment and theory is particularly satisfying in such analyses.

[3] Number of elementary steps in mechanism = Number of transition states in mechanism

Number of reaction intermediates in mechanism = Number of elementary steps in mechanism - 1

Within the realm of experimentation, probably the strongest evidence that can be obtained for the identity of a particular transient is if it can be generated from different precursors and by different techniques and if it can be shown that its spectroscopic and kinetic behaviours are the same irrespective of its origin or method of generation.

Acknowledgements

Parts of this work were presented at the 29th Ontario-Quebec Physical Organic Chemistry Mini-Symposium, 2-4 November 2001, York University, Toronto, Ontario.

The author thanks Wahab Farooq (University of Karachi History
It was chartered by the Majlis ash-Shura in September 1950 via an Act of Parliament. The university was established in June 1951, the fourth oldest university in Pakistan and the first in Karachi.
, Pakistan) for contributions to the list of coined terms in physical organic chemistry. Though best efforts were made in this work to recognize as many key contributors to the study of reaction intermediates as far as possible, any remaining errors and (or) omissions in any of the compilations is unintentional.

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(37.) (a) R. Robinson. Memoirs of a minor prophet: 70 years of organic chemistry. Vol. 1. Elsevier, Amsterdam. 1976; (b) T. Williams. Robert Robinson: chemist extraordinary. Clarendon Press, Oxford. 1990; (c) K.T. Leffek. Sir Christopher Ingold: a major prophet of organic chemistry. Nova Lion Press, Victoria, B.C. 1996; (d) R Laszlo. Ambix, 50, 261 (2003); (e) T.M. Brown, A.T. Dronsfield, and P.J.T. Morris. Educ. Chem. 40, 129 (2003); (f) M.D. Saltzmann. J. Chem. Ed. 57, 484 (1980); (g) J. Shorter. Nat. Prod. Rep. 4, 61 (1987).

(38.) (a) J.N. Bronsted and K. Pedersen. Z. Phys. Chem. 108, 185 (1924); (b) J.N. Bronsted. Z. Phys. Chem. 115, 337 (1925); (c) J.N. Bronsted and E.A. Guggenheim. J. Am. Chem. Soc. 49, 2554 (1927); (d) J.N. Br6nsted. Chem. Rev. 5, 231 (1928).

(39.) (a) L.P. Hammett. Chem. Rev. 17, 125 (1935); (b) L.P. Hammett. J. Am. Chem. Soc. 59, 96 (1937).

(40.) (a) H. Eyring. Z. Phys. Chem. B, 12, 279 (1931); (b) H. Eyring. J. Chem. Phys. 3, 107 (1935); (c) H. Eyring. Chem. Rev. 17, 65 (1935); (d) H. Eyring. Trans. Faraday Soc. 34, 41 (1938).

(41.) (a) H.C. Urey, F.G. Brickwedde, and G.M. Murphy. Phys. Rev. 39, 164 (1932); (b) H.C. Urey, F.G. Brickwedde, and G.M. Murphy. Phys. Rev. 40, 1 (1932).

(42.) (a) O. Reitz. Z. Phys. Chem. A177, 85 (1936); (b) O. Reitz. Naturwissenshaften, 24, 814 (1936); (c) O. Reitz. Z. Elektrochem. 43, 659 (1937); (d) O. Reitz. Z. Phys. Chem. A179, 119 (1937); (e) O. Reitz. Z. Elektrochem. 44, 72 (1938); (f) O. Reitz. Z. Elektrochem. 44, 693 (1938); (g) O. Reitz. Z. Elektrochem. 45, 100 (1939); (h) O. Reitz. Z. Phys. Chem. A183, 371 (1939); (i) O. Reitz and J. Kopp. Z. Phys. Chem. A184, 429 (1939).

(43.) (a) D. Rittenberg, W. Bleakney, and H.C. Urey. J. Chem. Phys. 2, 48 (1934); (b) R. Schoenheimer and D. Rittenberg. J. Biol. Chem. 111, 163 (1935); (c) R. Schoenheimer, D. Rittenberg, and M. Graff. J. Biol. Chem. 111, 183 (1935); (d) D.J.G. Ives and H.N. Rydon. J. Chem. Soc. 1735 (1935); (e) E.D. Hughes, F. Juliusburger, S. Masterman, B. Topley, and J. Weiss. J. Chem. Soc. 1525 (1935); (f) C.K. Ingold, E. de Salas, and C.L. Wilson. J. Chem. Soc. 1328 (1936); (g) D.J.G. Ives. J. Chem. Soc. 81 (1938); (h) D.J.G. Ives and G.C. Wilks. J. Chem. Soc. 1455 (1938); (i) R. Schoenheimer and D. Rittenberg. Science (Washington, D.C.), 87, 221 (1938); (j) DJ.G. Ives and R.H. Kerlogue. J. Chem. Soc. 1362 (1940); (k) R. Schoenheimer and D. Rittenberg. Physiol. Rev. 20, 218 (1940); (l) R.E. Kohler, Jr. Hist. Stud. Phys. Sci. 8, 257 (1977). 44. (a) H.C. Urey and L.J. Grieff. J. Am. Chem. Soc. 57, 321 (1935); (b) L.A. Webster, M.H. Wahl, and H.C. Urey. J. Chem. Phys. 3, 129 (1935).

(45.) W.G. Young and D.J. Cram. Biog. Memoirs Natl. Acad. Sci. 43, 321 (1973).

(46.) G.G. Hammes (Editor). Investigation of rates and mechanisms of reactions. Parts I and II. Wiley, New York. 1974.

(47.) (a) E. Whittle, D.A. Dows, and G.C. Pimentel. J. Chem. Phys. 22, 1943 (1954); (b) E.D. Becker and G.C. Pimentel. J. Chem. Phys. 25, 224 (1954).

(48.) (a) R.J. Gillespie. Acc. Chem. Res. 1, 202 (1968); (b) RJ. Gillespie. Can. Chem. Ed. 4, 9 (1969); (c) R.J. Gillespie and T.E. Peel. Adv. Phys. Org. Chem. 9, 1 (1971); (d) R.J. Gillespie. Endeavour, 32, 3 (1973); (e) R.J. Gillespie. Proton Transfer React. 1 (1975); (f) G.A. Olah and A. Commeyras. J. Am. Chem. Soc. 91, 2929 (1969); (g) G.A. Olah, A.T. Ku, and J.A. Olah. J. Org. Chem. 35, 3925 (1970); (h) G.A. Olah, G.K.S. Prakash, and J. Sommer. Superacids. Wiley, New York. 1984; (i) G.A. Olah. J. Org. Chem. 65, 5943 (2001).

(49.) J.C. Scaiano and H. Garcia. Acc. Chem. Res. 32, 783 (1999).

(50.) S.A. Blum, K.L. Tan, and R.G. Bergman. J. Org. Chem. 68, 4127 (2003).

(51.) M. Faraday. Pogg. Ann. Phys. Chem. 33, 433 (1834). Michael Faraday's contributions to chemistry also include the discovery of benzene (Phil. Trans. Roy. Soc. London 115, 440 (1825) and gas hydrates (Phil. Trans. Roy. Soc. London 133, 160 (1823)), and the synthesis of perchloro organic compounds such as hexachloroethane hexachloroethane

an anthelmintic used in the treatment of fascioliasis. Poisoning manifested by narcosis, staggering and falling. Fatal cases in cattle have abomasitis and hepatic necrosis.
, tetrachloroethylene tetrachloroethylene /tet·ra·chlo·ro·eth·y·lene/ (tet?rah-klor?o-eth´i-len) a moderately toxic chlorinated hydrocarbon used as a dry-cleaning solvent and for other industrial uses. , and hexachlorobenzene (Ann. Chita. Phys. 18, 48 (1821)).

(52.) (a) R. Kane. Pogg. Ann. Phys. Chem. 44, 475 (1838); (b) R. Kane. J. Prakt. Chem. 15, 129 (1838).

(53.) A. Strecker. Justus Liebigs Ann. Chem. 75, 27 (1850).

(54.) (a) J.J. Li. Name reactions: a collection of detailed reaction mechanisms. Springer-Verlag, Berlin. 2002; (b) H. Krauch and W. Kunz. Organic name reactions: a contribution to the terminology of organic chemistry, biochemistry, and theoretical organic chemistry (translated by J.M. Harkin). Wiley, New York. 1964; (c) J.F. Bunnett. Pure Appl. Chem. 53, 305 (1981); (d) R.A.Y. Jones and J.F. Bunnett. Pure Appl. Chem. 61, 725 (1989); (e) W.H. Powell. Pure Appl. Chem. 65, 1357 (1993); (f) G.R Moss, RA.S. Smith, and D. Tavernier. Pure Appl. Chem. 67, 1307 (1995).

(55.) (a) EC. Whitmore. Ann. Rep. Prog. Chem. (Chem. Soc. London), 30, 177 (1933); (b) EC. Whitmore. J. Am. Chem. Soc. 54, 3274 (1932); (c) EC. Whitmore. Chem. Eng. News, 26, 688 (1948).

(56.) (a) R.L. Barcus, L.M. Hadel, L.J. Johnston, M.S. Platz, T.G. Savino, and J.C. Scaiano. J. Am. Chem. Soc. 108, 3928 (1986); (b) D. Griller, L.M. Hadel, A.S. Nazran, M.S. Platz, EC. Wong, T.G. Savino, and J.C. Scaiano. J. Am. Chem. Soc. 106, 2227 (1984).

(57.) Precedence for this suggestion comes from the confirmation of the pyranodihydroquinolizone stmcture of the stable Wollenberg's yellow (O. Wollenberg. Chem. Ber. 67, 1675 (1934)) formed by passing excess ketene gas in pyridine (J.A. Berson and W.M. Jones. J. Am. Chem. Soc. 78, 1625 (1956)), and by the analogous structure of the unstable adduct adduct /ad·duct/ (ah-dukt´) to draw toward the median plane or (in the digits) toward the axial line of a limb.
adduct /ad·duct/ (a´dukt) inclusion complex.
 formed when excess diphenylketene reacts with pyridine: H. Staudinger, H.W. Klever, and R Kober. Justus Liebigs Ann. Chem. 374, 1 (1910).

(58.) (a) H. Phillips. J. Chem. Soc. 123, 44 (1923); (b) J. Kenyon and H. Phillips. Trans. Faraday Soc. 26, 451 (1930); (c) H. Phillips and J. Kenyon. J. Chem. Soc. 108 (1932); (d) H. Phillips and J. Kenyon. J. Chem. Soc. 1232 (1932); (e) H. Phillips and J. Kenyon. J. Chem. Soc. 179 (1933).

(59.) P.S. Skell skell  
n. Slang
A homeless person who lives as a derelict.



[Origin unknown.]
 and A.Y. Garner. J. Am. Chem. Soc. 78, 5430 (1956).

(60.) (a) E.O. Fischer and A. Maasbol. Angew. Chem. Int. Ed. Engl. 3, 580 (1964); (b) E.O. Fischer, C.G. Kreiter, J. Muller, G. Huttner, and H. Lorenz. Angew. Chem. Int. Ed. Engl. 12, 564 (1973); (c) F.R. Kreissl, A. Frank, U. Schubert, T.L. Lindner, and G. Hutner. Angew. Chem. 88, 649 (1976); (d) E.O. Fischer, A.C. Filippou, H.G. Alt, and K. Ackermann. J. Organomet. Chem. 254, C21 (1983).

(61.) (a) I.G. Csizmadia, J. Font, and O. Strausz. J. Am. Chem. Soc. 90, 7360 (1968); (b) K.P. Zeller, H. Meier, H. Kolshorn, and E. Mueller. Chem. Ber. 105, 1875 (1972).

(62.) G. Capozzi, G. Melloni, G. Modena, and U. Tonellato. Chem. Commun. 1520 (1969).

(64.) (a) M. Hofmann, N. Hampel, T. Kanzian, and H. Mayr. Angew. Chem. Int. Ed. 43, 5402 (2004); (b) A.R. Ofial and H. Mayr. Macromolecular mac·ro·mol·e·cule  
n.
A very large molecule, such as a polymer or protein, consisting of many smaller structural units linked together. Also called supermolecule.
 Symposia, 215, 353 (2004); (c) H. Mayr, B. Kempf, and A.R. Ofial. Acc. Chem. Res. 36, 66 (2003); (d) H. Mayr and M. Patz. Angew. Chem. Int. Ed. Engl. 33, 938 (1994).

(1) This article is part of a Special Issue dedicated to organic reaction mechanisms.

(2) Supplementary data for this article are available on the Web site or may be purchased from the Depository of Unpublished Data, Document Delivery, CISTI CISTI Canada Institute for Scientific and Technical Information
CISTI Civil Space Technology Initiative
CISTI Canadian Institute of Telecommunications Engineers
, National Research Council Canada, Ottawa, ON K1A 0S2, Canada. DUD 4039. For more information on obtaining material refer to http://cisti-icist.nrc-cnrc.gc.ca/irm/unpub_e.shtml.

(3) See ref. 20a, p. 139.

(4) See ref. 20a, p. 80, 148.

(5) Unfortunately, nucleophilicity, which is a ubiquitous chemical phenomenon, continues to be poorly described in pure quantitative terms from a theoretical point of view. No one universal standard reaction or set of standard reactions have been found to describe nucleophilicity adequately for all chemical structures or reaction types. Practically all existing scales break down at some point. The best that has been accomplished is to use entirely empirical approaches such as the ones advanced by Mayr and co-workers (63) based on extensive families of correlations. On the other hand, proton and electron transfer reactions are both rigorously described in theoretical and quantitative terms. In such reactions protons or electrons are either consumed or produced regardless of the chemical structures of reactants and products involved. This commonality greatly simplifies comparisons between reactions.

Received 15 April 2005. Published on the NRC NRC
abbr.
1. National Research Council

2. Nuclear Regulatory Commission

Noun 1. NRC - an independent federal agency created in 1974 to license and regulate nuclear power plants
 Research Press Website at http://canjchem.nrc.ca on 8 November 2005.

J. Andraos. Department of Chemistry, York University, Toronto, ON M3J 1P3, Canada. (e-mail: jandraos@yorku.ca).
Table 1. Chronology of discovery of reaction intermediates.

Year    Reaction intermediate discovered (scientists) (a)

1845    Fremy's nitroxide radical
1874    Sulfonium ions (A. von Oefele, C. Schoeller, A. Cahours)
1879    Radical cations (A. Laurent, C. Wurster, H. Wieland)
1879    Wurster salts
1886    Janovsky complex
1889    Meisenheimer-Jackson complexes
1900    Gomberg radical
1901    1963 (J. Stieglitz, J.F. Norris, A. Baeyer)
1901    Piloty's nitroxide radical
1902    Enols (E. Erlenmeyer, A. Lapworth)
1904    Thiele biradical
1905    Ketenes (H. Staudinger)
1906    Phosphonium ions (A. Michaelis, A.E. Arbuzov)
1907    Chichibabin biradical
1907    o-Quinodimethanes (R. Willstaetter)
1910    Carbanions (V. Grignard, W. Schlenk)
1910    Niementowski's nitroxide radical
1911    Ketyl radicals (A. Laurent, W. Schlenk)
1911    Carbenes (A. Geuther, H. Staudinger, J. Hine)
1911    o- and p-Quinonemethides (H. Staudinger)
1913    2,4- and 2,5-Cyclohexadienones (H. McCombie)
1914    Radical anions (M. Berthelot, W. Schlenk)
1915    Schlenk-Brauns biradical
1917    Nitrenes (F. Tiemann, H. Staudinger)
1919    Phosphonium ylides (A. Michaelis, H. Staudinger)
1920    Hydronium ions (L.S. Bagster, G. Cooling, M. Voltner)
1920    Hydrazyl radicals
1921    Pyridine ylides (W. Scheider)
1922    Sulfimine ylides (F. Mann, W.J. Pope)
1924    Flavylium salts (R. Robinson)
1926    Tetrahedral intermediates (J. Stieglitz, F. Swarts)
1926    Kenyon-Banfield radical
1929    Gas-phase alkyl radicals (F. Paneth)
1929    Ammonium ylides (C.K. Ingold)
1930    Sulfonium ylides (C.K. Ingold)
1931    Halonium ions (A. McKenzie, R. Kuhn, C.K. Ingold)
1932    Iminium ions (T.D. Stewart, W.E. Bradley)
1933    Solution-phase alkyl radicals (M.S. Kharasch)
1934    Acetoxy radicals (B.C. Brodie, D.H. Hey, W.A. Waters)
1935    Norrish type I and II biradcials
1937    Benzyl radicals (A. Michaelis, M.S. Kharasch)
1937    Aryl radicals (E. Bamberger, O. Kuehling, W.A. Waters)
1937    Acylium ions (L.P. Hammett, M. Bender)
1937    Acylammonium ions
1937    Meerwein salts
1939    Benzoyl radicals (J.F. Norris, H.H. Glazebrook,
          T.G. Pearson)
1939    Muller-Neuhoff biradical
1939    Mercurinium ions (H.J. Lucas)
1940    Episulfonium ions (A. Cahours, R.C. Fuson)
1942    Acetoxonium ions (S. Winstein)
1945    Phosphinyl radicals (M.S. Kharasch)
1945    Excited-state triplet ketones (G.N. Lewis, M. Kasha)
1946    Nitronium ions (C.K. Ingold, R.J. Gillespie)
1946    Aziridinium ions (J.S. Fruton, M. Bergmann)
1947    p-Quinodimethanes (W. Schlenk, M. Szwarc)
1949    Bridged carbocations (C.L. Wilson, S. Winstein)
1949    Nonclassical ions (C.L. Wilson, S. Winstein)
1949    Phenonium ions (D.J. Cram, S. Winstein)
1950    Germylenes (P. Royen, R. Schwarz, S.N. Glarum,
          C.A. Kraus)
1951    Nitrenium ions (J. Stieglitz, C.K. Ingold)
1951    Metallocenes (F. Hein, P.L. Peason, G. Wilkinson,
          R.B. Woodward)
1952    Aromatic [pi] complexes (M.J.S. Dewar, H.C. Brown)
1952    Metal carbenoids (P. Yates)
1952    Nitrosonium ions (C.K. Ingold)
1952    Methoxonium ions (S. Winstein)
1953    Benzynes (W.E. Bachmann, H.T. Clarke, J.D. Roberts)
1953    Aromatic [sigma] complexes (M. Kilpatrick, G.A. Olah,
          H.C. Brown)
1953    Doering-Zeiss intermediate
1953    Peroxy radicals
1953    Phenoxyl radicals (E. Muller, C.D. Cook)
1954    Phosphonium betaines (G. Wittig)
1954    Tropylium ions (W.v.E. Doering)
1956    Nitrilium ions (E. Beckmann, F. Klages, W. Grill, I. Ugi)
1956    Wheland intermediate (H.C. Brown, G.A. Olah)
1957    Aminyl radicals (H. Wieland)
1957    Koelsch radical
1957    Silyl radicals (F.C. Whitmore, R.N. Haszeldine)
1957    Cyclopropenyl cations (R. Breslow)
1957    Flavinium salts (A. Robertson, W.B. Whalley)
1958    Phenyl cation (T. Sandmeyer, E.S. Lewis)
1958    1,3-Dioxolenium ions (H. Meerwein)
1959    Pyrylium salts (A. Werner, A.T. Balaban)
1959    Nitroxyl radicals (H. Wieland, K.H. Meyer, O.L. Lebedev)
1959    Phosphoranyl radicals (C. Walling)
1960    Thicarbonyl ylide (G. Wittig)
1960    Vinyl cations (C.A. Grob, P.E. Peterson)
1960    Wanzlich carbenes
1962    Nitrile ylide (R. Huisgen)
1962    Carbonyl oxide (Criegee zwitterion) (R. Criegee,
          P.D. Bartlett)
1963    Wallach intermediate (O. Wallach, E. Buncel#, G.A. Olah)
1963    1,3-Dipole traps (R. Huisgen)
1963    Dinitrenes (A.M. Trozzolo, E. Wasserman)
1963    Verdazyl radicals (R. Kuhn)
1964    Violenes (S. Hunig)
1964    Thiophenoxyl radicals (U. Schmidt)
1964    Phenylselanyl radicals (U. Schmidt)
1964    Fischer carbene
1964    Vinylidene carbenes (H.D. Hartzler, W.J. le Noble)
1964    Iminoxyl radicals (J.R. Thomas)
1965    Phosphinoyl radicals
1966    Dications in magic acid (G.A. Olah)
1966    Acyl radicals (H.G. Kuivila, E.J. Walsh, Jr.)
1966    Stannyl radicals
1966    Silylenes (P.P. Gaspar)
1968    Oxirene (M. Berthelot, W. Madelung, I.G. Csizmadia,
          O. Strausz#)
1968    Vinylidenes (G.H. Coleman, R.D. Maxwell, M.S.
          Newman, P.J. Stang)
1968    Allene oxides (J.K. Crandall)
1968    Trinitrenes (E. Wasserman)
1969    Azomethines
1969    N-Alkoxy-N-alkylamino radicals
1969    Thiirenium ions (G. Modena)
1970    Carbonyl ylide (D.R. Arnold#)
1970    Phosphinothioyl radicals
1970    Transition-metal vinyl cation complexes (H.C. Clark,
          R.J. Puddephatt)
1971    Nicholas cation
1972    Dication in benzidine rearrangement (A. Hofmann,
          G.A. Olah)
1972    Transition metal vinylidene complexes (O.S. Mills,
          A.D. Redhouse, R.B. King)
1972    Amido radicals
1972    Transition-metal keteniminium complexes
1973    Oxenium ions (R.A. Abramovitch)
1973    Transition-metal carbene complexes (E.O. Fischer)
1974    Carbynes (O.P. Strausz#)
1974    Propadienones (R.F.C. Brown)
1974    Schrock carbene
1976    Thionitroxide radicals (J.E. Bennett, W.C. Danen)
1976    Thioaminyl radicals (W.C. Danen)
1976    Transition-metal ketenyl complexes (F.R. Kreissl)
1976    Transition-metal vinylidenecarbene (allenylidene) com-
          plexes (E.O. Fischer)
1977    Transition-metal silene complexes
1979    Butatrienones (R.F.C. Brown)
1980    2,4- and 2,5-Cyclohexadienimines
1982    Ketene zwitterions (R. Gompper, U. Wolf, J. Pacansky,
          J.C. Scaiano#)
1984    Trapping of carbenes via ylide formation (J.C. Scaiano,
          M.S. Platz)
1985    Bertrand carbene
1985    N-Thiosulfonamidyl radicals (Y. Miura)
1985    Distonic radical cation (L. Radom)
1989    Ynols (H. Staudinger, C.D. Hurd, R. Hochstrasser,
          J. Wirz, A.J. Kresge#)
1989    Oxonium ylides (W. Kirmse)
1991    Arduengo carbene
1992    Iminopropadienones (C. Wentrup)
1992    Trimethylsilyl substituted bisketenes (T.T. Tidwell#)
1993    Silylium ions (C.A. Reed)
1997    Allenylketenes (T.T. Tidwell#)
1999    Phosphenium ions (M.K. Denk#)

Note: Entries that represent contributions by scientists working in
Canadian universities or at the National Research Council of Canada are
indicated with #.

Note: See Table S5 in the Supplementary material (2) for references.

(a) Bolded entries represent contributions by scientists working in
Canadian universities or at the National Research Council of Canada.

Table 2. List of quenchers used for each reaction intermediate group.

Reaction intermediate
group                    Quenchers used

Carbenes                 Alcohols
                         Diazocompounds
                         Halogen donors (e.g., carbon tetrachloride,
                           chloroform)
                         Hydrogen donors (e.g., n-hexane, methanol,
                           isopropanol, isooctane, trialkyltin hydride)
                         Imines
                         Ketones (e.g., Michler's ketone, acetone)
                         Maleic acid, dimethyl ester
                         Nitriles (e.g., acetonitrile)
                         Olefins
                         Oxygen
                         Pyridine
                         2,2,6,6-Tetramethylpiperidine-N-oxide (TEMPO)
                         Thioketones (e.g., adamantanethione)
                         Thiols
                         Triethylamine
Carbocations             Alcohols (e.g., methanol, ethanol,
                           hexafluoroisopropanol, trifluoroethanol)
                         Azide ion
                         1,3,5-Trimethoxybenzene
1,3-Dipoles              Hydrogen donors (e.g., n-hexane, methanol,
                           isopropanol, isooctane, trialkyltin hydride)
                         Olefins
Excited state triplets   Aromatics (e.g., azulene, xylenes,
                           1,4-dimethoxybenzene,
                           9,10-dibromoanthracene)
                         Diethylsulfide
                         Iodine
                         Methyl viologen
                         Olefins (e.g., acrylonitrile, styrene,
                           methylmethacrylate, vinylacetate,
                           1,1-diphenylethene)
                         Oxgyen
                         Peroxy compounds (e.g., di-tert-butylperoxide,
                           benzoyl peroxide)
                         Phenols
                         2,2,6,6-Tetramethylpiperidine-N-oxide (TEMPO)
                         Triethylamine
                         Nitrous oxide
                         Di-tert-butylnitroxide
Ketenes                  Alcohols
                         Primary and secondary amines
                         Pyridine
                         2,2,6,6-Tetramethylpiperidine-N-oxide (TEMPO)
                         Water
Nitrenes                 Nitriles (e.g., acetonitrile)
Radicals                 Alcohols
                         Chloranil
                         1,4-Cyclohexadiene
                         2,3-Dichloro-5,6-dicyanobenzoquinone (DDQ)
                         Halogen donors (e.g., carbon tetrachloride,
                           chloroform)
                         Hydrogen donors (e.g., n-hexane, methanol,
                           isopropanol, isooctane, trialkyltin hydride)
                         Ni[(acac).sub.2], Fe[(acac).sub.3]
                         Nitrones
                         Nitroso compounds
                         Olefins
                         Oxygen
                         2,2,6,6-Tetramethylpiperidine-N-oxide (TEMPO)
                         Tetracyanoethylene (TCNE)
                         Tetracyano-p-quinodi methane (TCNQ)
                         Thiols

Fig. 3. Pie chart showing the frequency of occurrence of reaction
intermediate types in named organic reactions that constitute the
library of reactions used in organic synthesis.

Other (47 types)             30%
Tetrahedral intermediates    21%
Enolates and enols           12%
Carbanions                    6%
Metallocomplexes              6%
Carbenium ions                5%
Radicals (carbon centred)     4%
Iminium ions                  4%
Oxonium ions                  3%
o- and p-Quinoids             3%
Cumulenes                     3%
Wheland (arenium ions)        3%

Note: Table made from pie chart.
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