Potential public health impact of new tuberculosis vaccines.Developing effective tuberculosis (TB) vaccines is a high priority. We use mathematical models
********** Tuberculosis (TB) remains one of the leading causes of illness and death in the world. One third of the world's population is estimated to be infected with Mycobacterium tuberculosis Mycobacterium tuberculosis n. Tubercic bacillus. Mycobacterium tuberculosis , the causative caus·a·tive adj. 1. Functioning as an agent or cause. 2. Expressing causation. Used of a verb or verbal affix. caus agent of TB (1). This reservoir of infected persons leads to [approximately equal to] 8 million new cases of TB and 2 million deaths each year. Approximately 80% of all new TB cases in the world occur in 22 countries that have incidence rates from 68 to 584 per 100,000 population (2). The priorities for TB control programs in these areas are identifying and treating active cases. Unfortunately, only 40% of smear-positive pulmonary cases are detected globally, and, of these cases, 28% to 80% are treated successfully (2). Most high-incidence countries also use the only available TB vaccine, Mycobacterium bovis Mycobacterium bovis A mycobacterium that causes a TB-like infection in cows; before pasteurization was common, M bovis spread to humans via contaminated milk bacillus bacillus (bəsĭl`əs), any rod-shaped bacterium or, more particularly, a rod-shaped bacterium of the genus Bacillus. Some bacterium in the genus cause disease, for example B. Calmette-Gudrin (BCG BCG bacille Calmette-Guérin. BCG abbr. 1. bacillus Calmette-Guérin 2. ballistocardiogram BCG, n.pr See bacille Calmette-Guórin. ). Although BCG is the most widely used vaccine in the world, its efficacy in preventing adult forms of TB is relatively poor, with an average efficacy [approximately equal to] 50% (3). A new, more effective vaccine would be expected to improve TB control substantially, and therefore, vaccine development is one of the highest priorities in TB research (4,5). The Gates Foundation Gates Foundation: see Bill and Melinda Gates Foundation. recently provided nearly $83 million in grants to boost TB vaccine research (6). Recent sequencing of time M. tuberculosis M. tuberculosis, n the bacterium responsible for tuberculosis, generally a respiratory infection in man; nonrespiratory tuberculosis is considered an indicator disease for AIDS. See also tuberculosis. genome as well as new developments in proteomics and comparative genomics Comparative genomics is the study of relationships between the genomes of different species or strains. Comparative genomics is an attempt to take advantage of the information provided by the signatures of selection to understand the function and evolutionary processes that act on have led to renewed interest in developing new, more effective vaccines against TB (7,8). Vaccines currently under development include subunit vaccines sub·u·nit vaccine n. A vaccine containing viral antigens made free of viral nucleic acid by chemical extraction and containing only minimal amounts of nonviral antigens derived from the culture medium; it is less likely to cause adverse reactions than (9), naked DNA Naked DNA is histone-free DNA that is passed from cell to cell during a gene transfer process called transformation or transfection. In transformation, purified or naked DNA is taken up by the recipient cell which will give the recipient cell a new characteristic or phenotype. vaccines (10,11), and attenuated Attenuated Alive but weakened; an attenuated microorganism can no longer produce disease. Mentioned in: Tuberculin Skin Test attenuated having undergone a process of attenuation. mycobacteria mycobacteria members of the genus Mycobacterium. anonymous mycobacteria see opportunist (atypical) mycobacteria (below). nontubercular mycobacteria see opportunist (atypical) mycobacteria (below). , including recombinant BCGs expressing immunodominant antigens and cytokines Cytokines Chemicals made by the cells that act on other cells to stimulate or inhibit their function. Cytokines that stimulate growth are called "growth factors. (12). Phase I clinical trials Noun 1. phase I clinical trial - a clinical trial on a few persons to determine the safety of a new drug or invasive medical device; for drugs, dosage or toxicity limits should be obtained phase I of several of these vaccines are under way or scheduled to begin very soon (13,14). TB vaccines under development can be divided into two categories: preexposure or postexposure vaccines. Preexposure vaccines prevent infection and subsequent disease; these vaccines are given to uninfected persons. Postexposure vaccines aim to prevent or reduce progression to disease; these TB vaccines will be given to persons who are already infected with M. tuberculosis. In industrialized in·dus·tri·al·ize v. in·dus·tri·al·ized, in·dus·tri·al·iz·ing, in·dus·tri·al·iz·es v.tr. 1. To develop industry in (a country or society, for example). 2. countries where TB incidence is low, a preexposure vaccine is the most effective for TB control (15). However, the most effective type of vaccine to control TB epidemics in high-incidence countries, where prevalence of latent TB infection is high, is not apparent. We use mathematical models to predict the potential public health effect of new TB vaccines for epidemic control in high-incidence countries. We evaluate the effect of both pre- and postexposure TB vaccines on two outcome variables: the number of new infections and the number of new cases of disease. We then discuss health policy implications of our analyses. Prediction Methods We used mathematical models to compare the potential public health impact of mass vaccination campaigns that used either pre- or postexposure vaccines. We assessed the public health impact in terms of the cumulative percentage of infections prevented and the cumulative percentage of TB cases prevented. We modeled the potential effect of vaccines in developing countries with a high incidence and prevalence of infection. Our simulated incidence ranged from 100 to 200 new TB cases per 100,000 persons per year, and we assumed that 28%-50% of the population was latently infected with M. tuberculosis. We also assumed that treatment rates were low to moderate (i.e., that 40%-60% of TB patients would be treated and cured). We modeled the potential public health impact of high-efficacy (50%-90%) vaccines and high vaccination coverage rates (60%-90%). We used two separate mathematical models to assess the effect of vaccination: a pre- and a postexposure vaccine model (see Appendix). Our models are similar to those developed by Lietman and Blower (15,16), but we extended them to include the possibility of reinfection reinfection /re·in·fec·tion/ (-in-fek´shun) a second infection by the same agent or a second infection of an organ with a different agent. re·in·fec·tion n. of latently infected persons. We analyzed both of our models with uncertainty and sensitivity analysis based on Monte Carlo methods Monte Carlo method Statistical method of approximating the solution of complex physical or mathematical systems. The method was adopted and improved by John von Neumann and Stanislaw Ulam for simulations of the atomic bomb during the Manhattan Project. (17-20) (see Appendix for farther details) to quantify the effect of vaccine efficacy Vaccine efficacy is defined as the reduction in the incidence of a disease among people who have received a vaccine compared to the incidence in unvaccinated people. The efficacy of a new vaccine is measured in phase III clinical trials by giving one group of people a vaccine and , duration of vaccine-induced immunity, and vaccination coverage rates on the cumulative percentage of infections and TB cases prevented. Both our vaccine models reflect the basic pathogenesis pathogenesis /patho·gen·e·sis/ (path?ah-jen´e-sis) the development of morbid conditions or of disease; more specifically the cellular events and reactions and other pathologic mechanisms occurring in the development of disease. of TB (Figures 1 and 2), as in our previous models (21-27). When persons become infected with M. tuberculosis, one of the following can occur: 1) they can progress quickly to disease (with probability p); 2) they can become latently infected with M. tuberculosis (with probability 1 - p), and disease never develops; or 3) they can become latently infected with M. tuberculosis (with probability 1 - p) and slowly progress to disease (at rate v). Latently infected persons can also become reinfected (with a relative risk of 0) with a new strain of M. tuberculosis. We assessed the potential public health impact of 1,000 different postexposure and 1,000 different preexposure vaccines. Each vaccine had a different efficacy (50%-90%) and average duration of vaccine-induced immunity (10-30 years). We modeled vaccination coverage rates from 60% to 90%. We modeled a mass vaccination campaign at year zero, and then continuous vaccination of each target population each subsequent year. [FIGURES 1-2 OMITTED] Our pre- and postexposure vaccine models were designed to vaccinate vac·ci·nate v. To inoculate with a vaccine in order to produce immunity to an infectious disease such as diphtheria or typhus. vac different populations: preexposure vaccines were designed for uninfected persons, and postexposure vaccines were designed for latently infected persons. We modeled vaccine efficacy for the 1,000 postexposure vaccines by the magnitude of the vaccine's effect on reducing the rate of latently infected persons' progressing to disease (Figure 1). Efficacy of preexposure vaccines is potentially more complex than that of postexposure vaccines, since preexposure vaccines have several potential mechanisms of action. Thus, we assumed that preexposure vaccines could act by three different mechanisms (Figure 2): 1) by reducing the risk for infection in the uninfected, 2) by allowing infection but reducing the probability of fast progression to disease, and 3) by allowing infection but reducing the rate of progression of latent infection to clinical disease. For each of our 1,000 preexposure vaccines, we varied these three potential mechanisms independently from 50% to 90%. Percentage of Infections and Cases Prevented In terms of reducing the cumulative number of new infections with M. tuberculosis, we found that campaigns that used preexposure vaccines had substantially greater effectiveness than campaigns that used postexposure vaccines (Figure 3A). Preexposure vaccines quickly and substantially reduced the number of new infections; the median cumulative percentage of infections prevented (after 10 years of vaccination) was 46% (interquartile range In descriptive statistics, the interquartile range (IQR), also called the midspread, middle fifty and middle of the #s, is a measure of statistical dispersion, being equal to the difference between the third and first quartiles. [IQR IQR Interquartile Range (statistics) IQR Internet Quick Reference IQR Individual Qualification Record IQR Internal Quality Review ] 40%-53%). The effectiveness of preexposure vaccines in preventing new infections diminished over several decades but remained fairly high. Postexposure vaccines had a considerably slower and smaller effect on reducing the number of new infections; the cumulative percentage of infections prevented rose from 0% (when mass vaccination began) and peaked after [approximately equal to] 10 years at a median of 25% (IQR 21% 29%) (Figure 3A). After 10 years, the Years, The the seven decades of Eleanor Pargiter’s life. [Br. Lit.: Benét, 1109] See : Time effectiveness of postexposure vaccines in preventing new infections gradually declined. [FIGURE 3 OMITTED] In contrast, in terms of reducing the cumulative number of new cases of TB, postexposure vaccines initially had substantially greater effectiveness than preexposure vaccines. After 10 years of vaccination, postexposure vaccines had reduced the cumulative number of TB cases by a median of 34% (IQR 29%-40%) (Figure 3B); effectiveness diminished slightly over the next few decades, despite continuous vaccination of newly infected latent persons (Figure 3B). Preexposure vaccines, despite having reduced the infection rate by 46% (IQR 40%-53%) (Figure 3A), only reduced the cumulative percentage of TB cases by a median of 23% (IQR 21%-25%) after 10 years (Figure 3B). After 20 to 30 years of continuous vaccination, post- and preexposure vaccines had similar effectiveness in terms of the cumulative percent of TB cases prevented (Figure 3B). Coverage Rates, Duration of Immunity, and Vaccine Efficacy To predict the potential public health impact of pre- and postexposure vaccines, in our uncertainty analysis we varied vaccination coverage rates, duration of vaccine-induced immunity, and vaccine efficacy. We determined the quantitative effect of each of these three variables on the cumulative percentage of TB cases prevented by performing a multivariate The use of multiple variables in a forecasting model. sensitivity analysis and calculating partial rank correlation In statistics, rank correlation is the study of relationships between different rankings on the same set of items. It deals with measuring correspondence between two rankings, and assessing the significance of this correspondence. coefficients (PRCCs) (Appendix). The cumulative percentage of TB cases prevented increased substantially (PRCC PRCC Pearl River Community College (Mississippi) PRCC Papillary Renal Cell Carcinoma PRCC Puerto Rican Cultural Center (Chicago, IL) PRCC Puerto Rico Convention Center PRCC Parallel Rural Community Curriculum = 0.93, 0.96) as vaccination coverage rates increased from 60% to 90% (Figure 4A, unadjusted data after 20 years of continuous vaccination); this effect was greater for postexposure vaccines than preexposure vaccines. The cumulative percentage of TB cases prevented also increased substantially (PRCC = 0.95, 0.97) as the average duration of vaccine-induced immunity increased from 10 to 30 years (Figure 4B, unadjusted data after 20 years of continuous vaccination); this effect was greater for postexposurc vaccines than preexposure vaccines. [FIGURE 4 OMITTED] We assessed the effectiveness of 1,000 postexposure vaccines that varied in efficacy from 50% to 90%; vaccine efficacy was defined by the degree of reduction in the disease progression rate of latently infected persons. The cumulative percentage of TB cases prevented increased substantially as the postexposure vaccine efficacy increased from 50% to 90% (Figure 4C, unadjusted data after 20 years of continuous vaccination, PRCC = 0.97). Efficacy of preexposure vaccines is more complex than that of postexposure vaccines; therefore, we modeled the efficacy of preexposure vaccines by three different mechanisms (Figure 2) and evaluated the effect of each of the three mechanisms on the cumulative percentage of TB cases prevented. We assumed that preexposure vaccines could reduce the risk for infection in the uninfected (mechanism 1), allow infection but reduce the probability of rapidly progressing to disease (mechanism 2), and allow infection but reduce the rate of progression of latently infections to disease (mechanism 3). We varied each of these three potential mechanisms independently to vary efficacy levels from 50% to 90%. Preexposure vaccines that operated by using mechanism 3 were not effective (PRCC < 0.5) at preventing a substantial cumulative percentage of TB cases, even if these type of preexposure vaccines had a high efficacy. Preexposure vaccines that operated by either mechanism 1 or 2 were effective in preventing TB cases; with preexposure vaccines that operated by reducing the risk of infection in the uninfected (i.e., mechanism 1) being more effective (PRCC = 0.84) than vaccines that operated by allowing infection but reducing the probability of fast progression to disease (i.e., mechanism 2) (PRCC = 0.66). Public Health Policy Implications We evaluated the potential effectiveness of a variety of pre- and postexposure vaccines in controlling TB epidemics in countries that have both a high incidence of disease and a high prevalence of infection. Under these epidemiologic conditions, we found that preexposure vaccines would be almost twice as effective as postexposure vaccines in reducing the infection rate. In contrast, vaccination campaigns that used postexposure vaccines would initially have a substantially greater effect reducing the number of TB cases than campaigns that used preexposure vaccines. However, our predictions show that (despite continuous vaccination) the effectiveness of campaigns using postexposure vaccines would diminish over time but that the effectiveness of campaigns using preexposure vaccines would increase. Hence, after 20 to 30 years, campaigns using either postexposure or preexposure vaccines would be equally effective (because of the complexity of the vaccine mechanisms that we modeled) in terms of the cumulative number of TB cases prevented. Since preventing disease is more important than preventing infection and to have an immediate, substantial decrease in TB cases is desirable, our results imply that postexposure vaccines would be more beneficial than preexposure vaccines. Our results show that public health officials should expect campaigns that use postexposure vaccines to first appear highly effective, but that effectiveness will decrease with time. We have also shown that the incidence of disease is likely to remain high even if highly effective vaccines that induce long-term immunity are developed and widely deployed. We found that even widely deployed high-efficacy (50%-90%) pre- or postexposure vaccines are only likely to reduce the number of TB cases by one third. Reductions in the number of TB cases would directly translate into reductions in TB deaths (results not shown). Currently the annual TB death rate is 2 million; hence, our results indicate that the type of vaccines we modeled could save [approximately equal to] 700,000 lives per year. These vaccines could also substantially reduce the emergence of drug-resistant TB (22,24). To understand why even high-efficacy (50%-90%) vaccines are only capable of reducing the TB death rate by one third, how the natural history of M. tuberculosis infection differs from other, more "simple," pathogens (e.g., influenza influenza or flu, acute, highly contagious disease caused by a virus; formerly known as the grippe. There are three types of the virus, designated A, B, and C, but only types A and B cause more serious contagious infections. , measles measles or rubeola (r bē`ələ), highly contagious disease of young children, caused by a filterable virus and spread by droplet spray from the nose, mouth, , and smallpox smallpox, acute, highly contagious disease causing a high fever and successive stages of severe skin eruptions. The disease dates from the time of ancient Egypt or before. ) needs to be examined. For "simple" pathogens, preexposure vaccines can be very effective in reducing epidemic severity because the incidence of disease is a direct function of the incidence of infection. For a "simple" pathogen PathogenAny agent capable of causing disease. The term pathogen is usually restricted to living agents, which include viruses, rickettsia, bacteria, fungi, yeasts, protozoa, helminths, and certain insect larval stages. , if a vaccine reduces infection rates by 80%, then the vaccine will also reduce disease rates by 80%. However, the natural history TB is more complex: the incidence of disease does not directly reflect the incidence of infection with M. tuberculosis. The incidence of disease is driven by two sources: susceptible persons who become infected and quickly progress to disease (source 1) and latently infected persons who slowly progress to disease, often many years after the initial infection (source 2). Both sources make a substantial contribution to the incidence of disease. Preexposure vaccines (given to uninfected persons) will act mainly on reducing the contribution of source 1 to the incidence, but they will have little direct effect on reducing the contribution of source 2. In contrast, postexposure vaccines (given to latently infected persons) will act mainly on reducing the contribution of source 2 to the incidence but will have relatively little effect reducing the contribution of source 1. Therefore, even if highly effective pre- or postexposure vaccines are widely deployed, the incidence of TB in developing countries (as our results show) is likely to remain high. Also, the increasing HIV HIV (Human Immunodeficiency Virus), either of two closely related retroviruses that invade T-helper lymphocytes and are responsible for AIDS. There are two types of HIV: HIV-1 and HIV-2. HIV-1 is responsible for the vast majority of AIDS in the United States. epidemic will lead to continuous increases in the incidence of TB in developing countries (26). Currently, what effect co-infection with HIV will have on TB vaccine effectiveness is unclear; possibly, HIV co-infection could reduce vaccine effectiveness. Thus, any new TB vaccine should be evaluated in clinical trials to determine the effect of HIV coinfection on vaccine effectiveness. To reduce the severity of TB epidemics, we recommend that developing and deploying vaccines that act as both pre- and postexposure vaccines are necessary to simultaneously attack both sources that drive the TB rate. Additionally, maintaining high rates of detection and treatment of tuberculosis is necessary, as recommended by the World Health Organization (2); by combining treatment and vaccination strategies, eradicating TB epidemics may be possible, as we have previously shown (16). Our results have implications for designing both TB vaccines and vaccination campaigns. Highly effective vaccines will be needed to have the public health impact that we have shown (i.e., to reduce the TB death rate by one third). Whether or not the vaccines currently in development will afford this level of efficacy remains to be seen. Moreover, vaccines will need to provide very long-lasting immunity; our current analysis examines the effect of fairly long-lasting vaccines (10-30 years average duration of immunity). Different types of vaccines have different durations of immunity. For example, DNA DNA: see nucleic acid. DNA or deoxyribonucleic acid One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes. vaccines should provide lifelong immunity, whereas subunit vaccines will likely require booster Booster - A data-parallel language. "The Booster Language", E. Paalvast, TR PL 89-ITI-B-18, Inst voor Toegepaste Informatica TNO, Delft, 1989. vaccinations (28), an approach that would be more logistically difficult and expensive. Also, we have shown that preexposure vaccines are best if they prevent infection (mechanism 1) rather than allow infection but reduce the probability of fast progression to disease (mechanism 2) or reduce the rate of progression of latently infections to disease (mechanism 3). Whether or not new TB vaccines will prevent infection from occurring is not known, but BCG is clearly not able to prevent infection, and vaccines currently in development will likely not be able to do so either (29). As new TB vaccines and other control strategies become available, their potential benefits to TB control efforts can be evaluated by mathematical modeling. Mathematical models can be used as health policy tools to evaluate strategies for controlling TB (30-35); mathematical models also provide insights for predicting the potential public health impact of imperfect HIV vaccines HIV vaccine AIDS As of mid-2005, there is no viable anti-HIV vaccine. See AIDS. (36 39). Our results show that, because of the complex pathogenic path·o·gen·ic or path·o·ge·net·ic adj. 1. Having the capability to cause disease. 2. Producing disease. 3. Relating to pathogenesis. process of TB, high-incidence epidemics are unlikely to be substantially reduced by widely deploying highly effective preexposure or postexposure vaccines. We suggest that to achieve global control of TB, developing a single TB vaccine that functions as both a pre- and a postexposure vaccine is necessary. Appendix Vaccine Models Preexposure Model Our preexposure vaccine model consists of six ordinary differential equations ordinary differential equation Equation containing derivatives of a function of a single variable. Its order is the order of the highest derivative it contains (e.g., a first-order differential equation involves only the first derivative of the function). (1-6) that track the temporal dynamics of persons in six different states: uninfected unvaccinated (X), vaccinated uninfected ([X.sub.v]), unvaccinated latently infected (L), vaccinated latently infected ([L.sub.v]), active tuberculosis (TB) (T), and treated and cured (R). The model is given below: (1) dX/dt = (1 - c)[pi] - [beta]XT - [mu]X + [omega][X.sub.v] (2) d[X.sub.v]/dt = c[pi] - [[epsilon].sub.1][beta]XT - ([mu] + [omega])[X.sub.v] (3) dL/dt = (1 - p)[beta][X.sub.v]T - (v + [mu] + [theta Theta A measure of the rate of decline in the value of an option due to the passage of time. Theta can also be referred to as the time decay on the value of an option. If everything is held constant, then the option will lose value as time moves closer to the maturity of the option. ]p[beta]T)L + [omega][L.sub.v] (4) d[L.sub.v]/dt = (1 - [[epsilon].sub.2]p)[[epsilon].sub.1][beta]XT - ([[epsilon].sub.3]v + [mu] + [theta]p[beta]T + [omega])[L.sub.v] (5) dT/dt = p[beta]XT + [[epsilon].sub.1][[epsilon].sub.2]p[beta][X.sub.v]T + [omega]L + [[epsilon].sub.3][omega][L.sub.v] + [theta]p[beta]T + (L + [L.sub.v]) - ([mu] + [[mu].sub.T] + [phi])T (6) dR/dt = [phi]T - [mu]R Persons enter the population at rate [pi], and a fraction c of them are vaccinated. Uninfected-unvaccinated persons (X) are infected at rate [beta]T(t), and then either progress to active disease (T) immediately after infection with probability p, or progress to latent infection with probability 1 - p. Latently infected persons (L) progress to active disease because of reactivation reactivation to become active after a period of quiescence or, as in bacterial and viral infections, latency. cross reactivation of latent infection at rate v. In addition, latently infected persons (L) can also be reinfected at a rate [beta]T(t) and progress to active disease with probability p (the probability of rapid progression for newly infected persons) multiplied by the protection afforded by prior infection from rapid progression ([theta]). Uninfected vaccinated persons ([X.sub.v]) are protected from infection by probability [[epsilon].sub.1]. Vaccinated persons who become infected ([L.sub.v]) are protected from rapid progression to active disease by probability [[epsilon].sub.2]. We assume that the vaccine may offer some protection ii-ore reactivation ([[epsilon].sub.3]). The average duration of vaccine-induced immunity is 1/[omega]. The average life expectancy Life Expectancy 1. The age until which a person is expected to live. 2. The remaining number of years an individual is expected to live, based on IRS issued life expectancy tables. is 1/[mu]. Persons with active TB either die at a rate [[mu].sub.T] or receive effective treatment at a rate [phi], which leads to recovery (R). Postexposure Vaccine Model Our postexposure vaccine consists of six ordinary differential equations (7-12) that track the temporal dynamics of persons in six different states: uninfected (X), unvaccinated latently infected (L), vaccinated latently infected ([L.sub.v]), previously vaccinated latently infected who have lost immunity ([L.sub.w]), active disease (T), and treated and recovered (R). The model is given below: (7) dX/dt = (1 - c)[pi] - [beta]XT - [mu]X (8) dL/dt = (1 - p) [beta]XT - (v + [mu] + [theta]p[beta]T + [chi])L (9) d[L.sub.v]/dt = [chi]L - ([epsilon]v + [mu] + [theta]p[beta]T + [omega])L (10) d[L.sub.w]/dt = [omega][L.sub.v] - (v + [mu] + [theta]p[beta]T)[L.sub.w] (11) dT/dt = p[beta]XT + [omega](L + [L.sub.w]) + [[epsilon].sub.3][omega][L.sub.v] + [theta]p[beta]T (L + [L.sub.v] + [L.sub.w]) - ([mu] + [[mu].sub.T] + [phi])T (12) dR/dt = [phi]T - [mu]R Persons enter the population at rate [pi]. They become infected at rate [beta]T(t) and then either progress rapidly to active disease with probability p or progress to latent infection (L) with probability 1 - p. Latently infected persons (L) may progress to active disease at rate v or become reinfected at rate [theta]p[beta]T, where [theta] defines the protection from reinfection because of natural immunity natural immunity n. See innate immunity. . Latently infected persons may also be vaccinated. The rate of vaccination is set so that the h-action of latently infected persons who have been vaccinated is equal to c. Latently infected persons who have lost immunity have the same probability of reactivation and disease from new infection as uninfected persons. The average life expectancy is 1/[mu]. Persons with active TB either die at rate [[mu].sub.T] or receive effective treatment at a rate [theta], which leads to recovery. Uncertainty and Sensitivity Analysis We analyzed the two vaccine models by using time-dependent uncertainty analysis (1-6) and numerically simulated the models to calculate the cumulative reduction in new infections with Mycobacterium tuberculosis and cases of TB. The reduction in new infections and in cases of TB was calculated as the percentage of the cumulative number of new infections or new cases of TB that would have occurred without vaccination (but with treatment). We used probability density functions Probability density function The function that describes the change of certain realizations for a continuous random variable. to specify each parameter in the two models. We then used Latin hypercube A parallel processing architecture made up of binary multiples of computers (4, 8, 16, etc.). The computers are interconnected so that data travel is kept to a minimum. For example, in two eight-node cubes, each node in one cube would be connected to the counterpart node in the other. sampling, a modified Monte Carlo Monte Carlo (môNtā` kärlō`), town (1982 pop. 13,150), principality of Monaco, on the Mediterranean Sea and the French Riviera. sampling procedure, to sample all of the probability density functions (ranges are given in the text). To conduct the uncertainty analyses (for each model), we performed 1,000 simulations; full details of the uncertainty analysis methods are given elsewhere (1-8). We modeled the effects of an initial mass vaccination campaign of the target population and then continued vaccinating the target population. To quantify the sensitivity of the outcome variables to each parameter, we calculated a partial rank correlation coefficient between each parameter value and each outcome variable (1-8). Parameter Estimates Our biological parameter values for TB were chosen to simulate epidemics in a high-incidence, high-prevalence region. Estimates [mu], p, and [[mu].sub.t], are previously described (5). We assume that endogenous endogenous /en·dog·e·nous/ (en-doj´e-nus) produced within or caused by factors within the organism. en·dog·e·nous adj. 1. Originating or produced within an organism, tissue, or cell. immnity to disease from reinfection reduces rapid progression from reinfection by 50% to 100%; if protection is 100%, reinfection does not occur. Appendix References (1.) Blower SM, Dowlatabadi H. 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Comparative genomics of BCG vaccines by whole-genome DNA microarray DNA microarray A small solid support, usually a membrane or glass slide, on which sequences of DNA are fixed in an orderly arrangement. DNA microarrays are used for rapid surveys of the expression of many genes simultaneously, as the sequences contained on a . Science. 1999;284:1520-3. (5.) Behr MA. BCG--different strains, different vaccines? Lancet Infect Dis. 2002;2:86-92. (6.) McCarthy M. Gates grant boosts tuberculosis vaccine tuberculosis vaccine n. See BCG vaccine. research. US82.0 million dollars grant will double global spending on new tuberculosis vaccines Tuberculosis vaccines are vaccinations intended for the prevention of tuberculosis. There is currently only one tuberculosis vaccine available, bacille Calmette-Guérin (BCG). . Lancet. 2004;363:537. (7.) Cole ST, Brosch R. Parkhill J, Gamier T, Churcher C, Harris D, et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature. 1998;393:537-44. (8.) Young DB, Stewart GR. Tuberculosis vaccines. Br Med Bull. 2002;62:73-86. (9.) Olsen AW, van Pinxteren LAH, Okkels LM, Rasmussen RB, Andersen R Protection of mice with a tuberculosis subunit vaccine based on a fusion protein (10.) Tascon RE, Colston MJ, Ragno S, Stravropoulos E, Gregory D, Lowrie DB. Vaccination against tuberculosis by DNA injection. Nat Med. 1996;2:888-92. (11.) Lowrie DB, Tascon RE, Bonato VL, Lima VM, Faccioli LH, Stravropoulos E, et al. Therapy of tuberculosis in mice by DNA vaccination DNA vaccination is a proposed experimental technique for protecting an organism against disease by injecting it with naked DNA to produce an immunological response. Thus far, few experimental trials have evoked a response sufficiently strong enough to protect against disease, and . Nature. 1999;400:269-71. (12.) Horwitz MA, Harth G, Dillon BJ, Maslesa-Galic S. Recombinant bacillus Calmette-Guerin bacillus Cal·mette-Gué·rin n. Abbr. BCG An attenuated strain of tubercle bacillus grown in repeated cultures on medium containing bile and used in tuberculosis vaccines. Also called bacille Calmette-Guérin. (BCG) vaccines expressing the Mycobacterium tuberculosis 20-kDa major secretory protein A secretory protein is any protein, whether it be endocrine or exocrine, which is secreted by a cell. Secretory proteins include many hormones, enzymes, toxins, and antimicrobial peptides. induce greater protective immunity against tuberculosis than conventional BCG vaccines in a highly susceptible animal model. Proc Natl Acad Sci U S A. 2000;97:13853-8. (13.) Ginsberg AM. What's new in tuberculosis vaccines? Bull World Health Organ. 2002;80:483-8. (14.) Thomson J. New TB vaccines to be tested. Nat Med. 2001;7:1263. (15.) Lietman T, Blower SM. The potential impact of tuberculosis vaccines as epidemic control agents. Clin Infect Dis. 2000;30:S316-22. (16.) Lietman T, Blower SM. Tuberculosis vaccines. Science. 1999;286:1300-1. (17.) Blower SM, Dowlatabadi H. Sensitivity and uncertainty analysis of complex models of disease transmission: an HIV model, as an example. Int Stat Rev. 1994;2:229-43. (18.) Blower SM, Aschenbach AN, Gershengorn HB, Kahn JO. Predicting the unpredictable: transmission of drug-resistant HIV. Nat Med. 2001;7:1016-20. (19.) Blower SM, Gershengorn HB, Grant RM. A tale of two futures: HIV and antiretroviral therapy in San Francisco. Science. 2000;287:650-4. (20.) Blower SM, Koelle K, Kirschner DE, Mills J. Live attenuated HIV vaccines: predicting the trade-off between efficacy and safety. Proc Natl Acad Sci U S A. 2001;98:3618-23. (21.) Blower SM, McLean AR, Porco TC, Small PM, Hopewell PC, Sanchez MA, et al. The intrinsic transmission dynamics of tuberculosis epidemics. Nat Med. 1995;1:815-21. (22.) Blower SM, Small PM, Hopewell PC. Control strategies for tuberculosis epidemics: new models for old problems. Science. 1996;273:497-500. (23.) Sanchez MA, Blower SM. Uncertainty and sensitivity analysis of the basic reproductive rate: tuberculosis as an example. Am J Epidemiol. 1997;145:1127-37. (24.) Porco TC, Blower SM. Quantifying the intrinsic transmission dynamics of tuberculosis. Theo Pop Biol. 1998;54:117-32. (25.) Blower SM, Gerberding JL. Understanding, predicting and controlling the emergence of drug-resistant tuberculosis: a theoretical framework. J Mol Med. 1998;76:624-36. (26.) Porco TC, Small PM, Blower SM. Amplification dynamics: predicting the effect of HIV on tuberculosis outbreaks. J Acquir Immune Defic Syndr. 2001;28:437-44. (27.) Ziv E, Daley CL, Blower SM. Early therapy for latent tuberculosis latent tuberculosis Infectious disease Infection with M tuberculosis that has been contained by the host's immune system and thus does not infect others Diagnosis Tuberculin skin test; release of IFN-γ in blood after PPD stimulation. See Tuberculosis. infection. Am J Epidemiol. 2001;153:381-5. (28.) Ginsberg AM. A proposed national strategy for tuberculosis vaccine development. Clin Infect Dis. 2000;30(Suppl 3):S233-42. (29.) Letvin NL, Bloom BR, Hoffman SL. Prospects for vaccines to protect against AIDS, tuberculosis, and malaria. JAMA. 2001;285:606-11. (30.) Waaler HT, Pint MA. The use of an epidemiological model for estimating the effectiveness of tuberculosis control measures. Sensitivity of the effectiveness of tuberculosis control measure to the coverage of the population. Bull World Health Organ. 1969;41:75-93. (31.) Blower SM, Volberding P. What can modeling tell us about the threat of antiviral antiviral /an·ti·vi·ral/ (-vi´ral) destroying viruses or suppressing their replication, or an agent that so acts. an·ti·vi·ral adj. drag resistance? Curr Opin Infect Dis. 2002;15:609-14. (32.) Murray C J, Salomon JA. Modeling the impact of global tuberculosis control strategies. Proc Natl Acad Sci U S A. 1998;95:13881-6. (33.) Brewer TF, Heymann SJ, Krumplitsch SM, Wilson ME, Colditz GA, Fineberg HV. Strategies to decrease tuberculosis in US homeless populations: a computer simulation model. JAMA. 2001;286:834-42. (34.) Castillo-Chavez C, Feng Z. Global stability of an age-structure model for TB and its applications to optimal vaccination strategies. Math Biosci. 1998;151:135-54. (35.) Bishai DM, Mercer It. Modeling the economic benefits of better TB vaccines. Int J Tuberc Lung Dis. 2001;5:984-93. (36.) McLean AR, Blower SM. Imperfect vaccines and herd immunity herd immunity n. 1. Resistance to the spread of infectious disease in a group because susceptible members are few, making transmission from an infected member unlikely. 2. to HIV. Proc R Soc Lond B Biol Sci. 1993;253:9-13. (37.) Blower SM, McLean AR. Prophylactic prophylactic /pro·phy·lac·tic/ (pro?-fi-lak´tik) 1. tending to ward off disease; pertaining to prophylaxis. 2. an agent that tends to ward off disease. pro·phy·lac·tic n. vaccines, risk behavior change Behavior change refers to any transformation or modification of human behavior. Such changes can occur intentionally, through behavior modification, without intention, or change rapidly in situations of mental illness. & the probability of eradicating HIV in San Francisco. cience. 1994;265:1451-4. 38. Blower SM, Schwartz E J, Mills J. Forecasting the future of HIV epidemics: the impact of antiretroviral therapies and imperfect vaccines. AIDS Rev. 2003;5:113-25. (39.) Blower SM, Moss RB, Fernandez-Cruz E. Calculating the potential epidemic-level impact of therapeutic vaccination on the San Francisco HIV epidemic. AIDScience [serial on the Internet]. 2003 Oct;3. Available from: http://www.aidscience.org/Articles/AIDScience040.asp Elad Ziv, * Charles L. Daley, * ([dagger]) and Sally Blower ([double dagger double dagger n. A reference mark ( ) used in printing and writing. Also called diesis.Noun 1. ]) * University of California--San Francisco, San Francisco, California “San Francisco” redirects here. For other uses, see San Francisco (disambiguation). The City and County of San Francisco (EN IPA: [sænfrənˈsɪskoʊ] , USA; ([dagger]) San Francisco General Hospital San Francisco General Hospital is the main public hospital in San Francisco, California, and the only Level I Trauma Center serving San Francisco and San Mateo. The hospital budget is for only 302 beds at SFGH. , San Francisco, California, USA; and ([double dagger]) David Geffen School of Medicine at UCLA UCLA School of Medicine or David Geffen School of Medicine at UCLA is an accredited allopathic medical school located in Los Angeles, California, United States. The school was named in honor of media mogul David Geffen who donated $200 million in unrestricted funds to the , Los Angeles Los Angeles (lôs ăn`jələs, lŏs, ăn`jəlēz'), city (1990 pop. 3,485,398), seat of Los Angeles co., S Calif.; inc. 1850. California, USA Address for correspondence: Sally Blower, Department of Biomathematics bi·o·math·e·mat·ics n. (used with a sing. verb) The application of mathematical principles to biological processes. bi , David Geffen School of Medicine at UCLA, 10833 Le Conte Avenue, Los Angeles, CA 90095-1766, USA; fax: 310-206-6116; email: sblower@mednet.ucla UCLA University of California at Los Angeles UCLA University Center for Learning Assistance (Illinois State University) UCLA University of Carrollton, TX and Lower Addison, TX .edu |
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bē`ələ)
) used in printing and writing. Also called diesis.
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