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Phylogenetic relationships of southern African West Nile virus isolates. (Research).


Phylogenetic phy·lo·ge·net·ic
adj.
1. Of or relating to phylogeny or phylogenetics.

2. Relating to or based on evolutionary development or history.
 relationships were examined for 29 southern African West Nile virus West Nile virus, microorganism and the infection resulting from it, which typically produces no symptoms or a flulike condition. The virus is a flavivirus and is related to a number of viruses that cause encephalitis.  (formal name West Nile virus [WNV WNV West Nile Virus
WNV World Net Visions
]) isolates from various sources in four countries from 1958 to 2001. In addition sequence data were retrieved from GenBank for another 23 WNV isolates and Kunjin and Japanese encephalitis Japanese Encephalitis Definition

Japanese encephalitis is an infection of the brain caused by a virus. The virus is transmitted to humans by mosquitoes.
 viruses. All isolates belonged to two lineages. Lineage 1 isolates were from central and North Africa, Europe, Israel, and North America; lineage 2 isolates were from central and southern Africa and Madagascar. No strict correlation existed between grouping and source of virus isolate, pathogenicity, geographic distribution, or year of isolation. Some southern African isolates have been associated with encephalitis encephalitis (ĕnsĕf'əlī`təs), general term used to describe a diffuse inflammation of the brain and spinal cord, usually of viral origin, often transmitted by mosquitoes, in contrast to a bacterial infection of the meninges  in a human, a horse, and a dog and with fatal hepatitis in a human and death of an ostrich chick.

**********

West Nile virus (formal name West Nile virus [WNV]) is a mosquito-borne member of the Flaviviridae family (genus Flavivirus), which was originally isolated from the blood of a febrile febrile /feb·rile/ (feb´ril) pertaining to or characterized by fever.

feb·rile
adj.
Of, relating to, or characterized by fever; feverish.
 patient in Uganda in 1937 (1). The virus is widely distributed in Africa, Asia, and Europe and was recently spread to the Western Hemisphere, where its presence was recognized in the northeastern United States in 1999 (2,3).

After the initial isolation of the virus, sporadic cases and outbreaks of febrile disease were recorded in humans in Africa, the Near East, and Asia; the largest outbreaks occurred in Israel in 1950-1954 and 1957 and in South Africa in 1974 (4,5). Meningoencephalitis meningoencephalitis /me·nin·go·en·ceph·a·li·tis/ (me-ning?go-en-sef?ah-li´tis) inflammation of the brain and meninges.

toxoplasmic meningoencephalitis
 was first observed in elderly patients in Israel in 1957 and subsequently observed as a complication in young children in India (6,7). In 1962, the isolation of WNV from a horse with encephalitis was reported in Egypt; from 1962 through 1966, meningoencephalitis occurred in both humans and horses in a series of outbreaks in southern France (8,9). In 1983, four cases of hepatitis, two fatal, were attributed to WNV infection in the Central African Republic Central African Republic, republic (2005 est. pop. 3,800,000), 240,534 sq mi (622,983 sq km), central Africa. The landlocked nation is bordered by Chad (N), Sudan (E), Congo (Kinshasa) and Congo (Brazzaville) (S), and Cameroon (W).  (CAR), a report that has been largely overlooked (10). A marked increase in the frequency and severity of outbreaks of human disease during the 1990s followed, often involving horses; epidemics occurred in Algeria, Romania, Morocco, Tunisia, Italy, Russia, France, Israel, and the United States (11-18). Moreover, the recent outbreaks in Romania, Israel, and the United States were characterized by concurrent deaths in birds (19,20). The virus circulating in the United States was found to be most closely related genetically to a WNV isolate associated with goose deaths in Israel in 1998, suggesting that the virus was imported into America from the Near East, either in an infected bird, mosquito, human, or other animal. The exact mechanism of the introduction will probably remain unknown (18,19).

In southern Africa, WNV was found to be widely endemic in areas where the principal vector, Culex Culex /Cu·lex/ (ku´leks) a genus of mosquitoes found throughout the world, many species of which are vectors of disease-producing organisms.

Cu·lex
n.
 univittatus, and avian hosts of the virus are present. Human infections tended to be sporadic; large epidemics occurred when unusually high rainfall or hot weather favored breeding of the vectors (21-23). Outbreaks were associated with concurrent epizootics in birds, as evidenced by antibody studies, and 13 species of experimentally infected wild birds supported replication of the virus without becoming overtly sick or dying (24-26). The largest epidemic occurred in 1974 and involved tens of thousands of human cases over a 2,500-[km.sup.2] area of the Karoo ka·roo also kar·roo  
n. pl. ka·roos
An arid plateau of southern Africa.



[Afrikaans, from Nama !garo-b, desert.
 and Northern Cape Provinces (5,21). A mean antibody prevalence of 55% in humans was recorded in the affected region after the outbreak; levels of 80% to 85% were recorded in some locations. In one town, 1,700 people sought medical attention. Infections were most frequently subclinical subclinical /sub·clin·i·cal/ (sub-klin´i-k'l) without clinical manifestations.

sub·clin·i·cal
adj.
Not manifesting characteristic clinical symptoms. Used of a disease or condition.
 or associated with mild febrile illness characterized by rash, myalgia myalgia /my·al·gia/ (mi-al´jah) muscular pain.myal´gic

epidemic myalgia  see under pleurodynia.


my·al·gia
n.
, and arthralgia arthralgia /ar·thral·gia/ (ahr-thral´jah) pain in a joint.

ar·thral·gia
n.
Severe pain in a joint. Also called arthrodynia.
. No human deaths were recorded, and no excess bird deaths were observed, although an antibody prevalence of 53% was detected in wild birds after the outbreak (5,21). A smaller epidemic occurred from 1983 through 1984 in association with an outbreak of Sindbis virus Sindbis virus
n.
An alphavirus that is the causative agent of Sindbis fever.
 (formal name: Sindbis virus) infection in the Witwatersrand-Pretoria region of South Africa, and again no deaths were recorded (23). Since then, the number of human WNV infections confirmed in South Africa, mainly on the basis of detection of antibody response, has remained fairly constant at approximately 5-15 cases per year. Only a proportion of suspected cases are subject to laboratory investigation. Despite the apparently low level of virus activity, however in recent years, a few isolations of WNV have been made from patients with severe disease, including a fatal case of hepatitis in 1989 and nonfatal encephalitis in 2001 (National Institute for Communicable Diseases [NICD See nickel cadmium. ], unpub. data).

The apparent increases in the frequency of neurologic infections, human case-fatality rates, and horse and bird deaths in the Northern Hemisphere raised the question of whether a recent emergence of WNV strains with increased pathogenicities occurred or whether the virulence of the virus had previously been underestimated. Investigations with hemagglutination-inhibition kinetics, titer ratios from cross-neutralization tests, reactivity to monoclonal antibodies, and cDNA/RNA heteroduplex restriction enzyme restriction enzyme

Protein (more specifically, an endonuclease) produced by bacteria that cleaves DNA at specific sites along its length. Thousands have been found, from many different bacteria; each recognizes a specific nucleotide sequence.
 digest profiles confirmed that strain differences occur but did not establish any links between variants and pathogenicity (27-30). More recently, phylogenetic analyses based on different regions of the genome have shown that WNV isolates form two well-supported lineages (19,31,32). Lineage 1 includes viruses from Africa north of the equator, Europe, Asia, and North America; Kunjin virus Kunjin virus

a strain of West Nile virus, generally considered apathogenic but has been isolated from horses with encephalomyelitis. See also encephalitis.
 (formal name: Kunjin virus [KUNV]) from Australia constitutes a subtype (programming) subtype - If S is a subtype of T then an expression of type S may be used anywhere that one of type T can and an implicit type conversion will be applied to convert it to type T.  of this lineage. Lineage 2 consists solely of viruses from Africa and Madagascar. These findings support the emergence of increased virulence in lineage 1. Lineage 2 isolates are thought to be associated with endemic infection of low virulence in Africa (18,19).

The South African prototype WNV isolate, H 442, was obtained in 1958 from the blood of a person with mild febrile disease who had been bitten by mosquitoes while catching birds in mist nets for arbovirus arbovirus

Any of a large group of viruses that develop in arthropods (chiefly mosquitoes and ticks). The name derives from “arthropod-borne virus.” The spheroidal virus particle is encased in a fatty membrane and contains RNA; it causes no apparent harm to the
 studies (33). This isolate is the only one from South Africa to have been included in a phylogenetic study, and its characterization as a member of lineage 1 (19) seems to be inconsistent with findings for other African isolates from south of the equator. However, apart from recent isolation of WNV from severe cases of human disease in southern Africa, isolations of the virus were associated with a fatal infection in a dog, a horse, and an ostrich chick (34; unpub. data, NICD). Hence, we were prompted to undertake phylogenetic investigation of southern African WNV isolates.

Methods and Materials

Virus Isolates

Phylogenetic analysis was performed on partial nucleotide sequence data from 52 WNV isolates. This included 29 isolates obtained from various sources in southern Africa from 1958-2001, which were sequenced for the study (Table 1). Twenty-three WNV isolates and KUNV and Japanese encephalitis viruses (JEV JEV Jesuit European Volunteers
JEV Joinville Eau Vive (France) 
) for which sequence data were retrieved from GenBank were also analyzed (Table 2). Southern African isolations made at NICD included 8 human, 15 mosquito, 1 bird, and 2 sentinel animal isolates. Three isolates obtained by the Onderstepoort Veterinary Institute, Pretoria, included the horse and ostrich isolates, which originated from the Regional Veterinary Laboratory, Stellenbosch, Western Cape Province, and a dog isolate, which originated from the Veterinary Investigation and Research Laboratory, Gaborone, Botswana, and was initially described as Wesselsbron virus (WESSV) but was later found to be WNV (34; BJH BJH Barclay James Harvest (English pop group)
BJH Bethel Junior High
BJH Bopp-Jancso-Heinzinger (potential function)
BJH Brookhurst Junior High (Anaheim, CA) 
 Barnard, pers. comm.). No isolates from the 1974 epidemic could be located for this study. The isolates were stored at -70[degrees]C as freeze-dried 10% mouse brain suspensions, and low-passage material was selected for sequencing (Table 1). With the prototype isolate, H 442, stocks of freeze-dried material were sequenced at various mouse passage levels (2-7), and passaged 2 material was passaged 10 times in mice and sequenced.

The bird, mosquito, and sentinel animal isolates (Table 1) were obtained during epidemiologic studies (21); the human isolates (Tables 1 and 3) were obtained from clinical specimens submitted to the Arbovirus Unit or the Special Pathogens Unit at NICD for the investigation of suspected cases of arbovirus infection or for the exclusion of African viral hemorrhagic fevers. In all instances, WNV was isolated from human serum samples by mouse inoculation, except for patient 5, from whom the virus was isolated from a liver sample taken at autopsy.

Reverse Transcriptase Reverse transcriptase

Any of the deoxyribonucleic acid (DNA) polymerases present in particles of retroviruses which are able to carry out DNA synthesis using an RNA template.
 Polymerase Chain Reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  (RT-PCR RT-PCR

reverse transcriptase-polymerase chain reaction. See PCR1.
) and Nucleotide Sequencing of Amplicons

Freeze-dried mouse brain suspensions were reconstituted in water, and viral RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
 was extracted for the RT-PCR by using the QIAamp Viral RNA kit (Qiagen, Valencia, CA) according to the manufacturer's instructions. A 255-bp region of the E glycoprotein glycoprotein (glī'kōprō`tēn), organic compound composed of both a protein and a carbohydrate joined together in covalent chemical linkage.  gene (genome positions 1402-1656) was amplified with primers designated WN132 and WN240, as described by Berthet et al. (32). The RT-PCR reactions were performed with the TITAN One Tube RT-PCR kit (Roche Diagnostics, Germany) according to the manufacturer's instructions. The nucleotide sequences of the amplicons were determined with BigDye Terminator Cycle Sequencing Ready Reaction kits with AmpliTaq DNA polymerase DNA polymerase /DNA po·lym·er·ase/ (pah-lim´er-as) any of various enzymes catalyzing the template-directed incorporation of deoxyribonucleotides into a DNA chain, particularly one using a DNA template.  FS (Applied Biosystems, Warrington, Great Britain) according to the manufacturer's instructions. Sequences were obtained for both strands of the DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 amplicons by using each primer, WN132 and WN240, for confirmation of the nucleotide sequence. Products were purified by using Centri-Sep spin columns (Princeton Separations Inc., Adelphia, New Jersey Adelphia is an unincorporated area located within Howell Township in Monmouth County, New Jersey, United States. Nomenclature
Prior to the community adapting its name from the Greek word for 'brotherhood' (adelphia), the area was previously known as Turkey.
) and analyzed with a 377 GenAmp automatic sequencer See MIDI sequencer.

(music) sequencer - Any system for recording and/or playback of music via a programmable memory which stores music not as audio data, but as some representation of notes.
 (Applied Biosystems).

Phylogenetic Analysis

Editing and alignment of the nucleotide sequence data were performed with DNASIS for Windows Version 2.5 (Hitachi Software Engineering America, Brisbane, CA). The phylogenetic analysis was performed on a 227-bp region of the amplicons with a neighbor-joining distance method (unordered "p" parameter model), with Phylogenetic Analysis with Parsimony par·si·mo·ny  
n.
1. Unusual or excessive frugality; extreme economy or stinginess.

2. Adoption of the simplest assumption in the formulation of a theory or in the interpretation of data, especially in accordance with the rule of
 (PAUP PAUP Phylogenetic Analysis Using Parsimony ) software version 4.0b4a for Macintosh (35). Bootstrap See boot.

(operating system, compiler) bootstrap - To load and initialise the operating system on a computer. Normally abbreviated to "boot". From the curious expression "to pull oneself up by one's bootstraps", one of the legendary feats of Baron von Munchhausen.
 confidence intervals were calculated by 500 heuristic search replicates.

Results

Clinical Features of WNV Infections

The human isolates (Tables 1 and 3) were obtained from clinical specimens submitted to the Arbovirus Unit for the investigation of suspected cases of arbovirus infection or undiagnosed fever, except for the three isolates obtained from specimens submitted in 1989 from patients 4, 5, and 6 (Table 3) for the exclusion of African viral hemorrhagic fevers; tests for Marburg disease Marburg disease

a severe, often fatal, viral hemorrhagic fever of humans first reported in Marburg, Germany, among laboratory workers exposed to African green monkeys. The virus is a member of the family Filoviridae.
, Ebola fever, Crimean-Congo hemorrhagic fever Crimean-Congo hemorrhagic fever

a zoonotic disease of humans, in central Asia through to eastern Europe, who are in contact with livestock. Caused by a bunyavirus, it is transmitted by ticks. The principal signs are fever, widespread hemorrhages and necrotizing hepatitis.
, Rift Valley fever Rift Valley fever

An arthropod-borne (primarily mosquito), acute, febrile, viral disease of humans and numerous species of animals. Rift Valley fever is caused by a ribonucleic acid (RNA) virus in the genus Phlebovirus of the family Bunyaviridae.
, Lassa fever Lassa fever (lăs`ə), a severe viral disease occurring mostly in W Africa, characterized by high fever, muscle aches, mouth ulcers, and bleeding in the skin. The disease was first recognized in Lassa, Nigeria, in 1969. , and hantaviruses were negative.

Patients 1-3 and 6-7 (Table 3) had benign WNV infections with fever, rash, myalgia, and arthralgia; specimens from patient 6 were submitted for the exclusion of viral hemorrhagic fever only because he had an outdoor occupation in Namibia with potential exposure to ticks, and thus Crimean-Congo fever was considered a possibility. Patient 4 also had an outdoor occupation, in Free State Province of South Africa and a definite history of exposure to mosquito bites. During the second week of a febrile illness, he had coagulopathy with abnormal prothrombin prothrombin

Carbohydrate-protein compound in plasma essential to coagulation. In response to bleeding, a complex series of clotting-factor interactions leads to its conversion by thromboplastin to thrombin, which transforms fibrinogen in plasma into fibrin.
 index and partial thromboplastin time Partial Thromboplastin Time Definition

The partial thromboplastin time (PTT) test is a blood test that is done to investigate bleeding disorders and to monitor patients taking an anticlotting drug (heparin).
, hemoglobinuria hemoglobinuria /he·mo·glo·bin·uria/ (he?mo-glo?bi-nu´re-ah) free hemoglobin in the urine.hemoglobinu´ric

march hemoglobinuria  that seen after prolonged exercise.
, pancreatitis, and renal failure renal failure
n.
Acute or chronic malfunction of the kidneys resulting from any of a number of causes, including infection, trauma, toxins, hemodynamic abnormalities, and autoimmune disease, and often resulting in systemic symptoms, especially edema,
 requiring dialysis. He made a prolonged but full recovery.

Patient 5, who lived on the northern outskirts of Pretoria, had fever, nausea and vomiting Nausea and Vomiting Definition

Nausea is the sensation of being about to vomit. Vomiting, or emesis, is the expelling of undigested food through the mouth.
, epigastric epigastric adjective Referring to the body region between the costal margins and the subcostal plane  pain, elevated blood and urine amylase amylase (ăm`əlās'), enzyme having physiological, commercial, and historical significance, also called diastase. It is found in both plants and animals. Amylase was purified (1835) from malt by Anselme Payen and Jean Persoz. , elevated blood urea blood urea

see blood urea/nitrogen.
 and creatinine values, and markedly elevated transaminases. He was admitted to the hospital on the second day of illness with low fever and tender epigastrium epigastrium /epi·gas·tri·um/ (ep?i-gas´tre-um) the upper and middle region of the abdomen, located within the sternal angle.epigas´tric

ep·i·gas·tri·um
n. pl.
. Tests for hepatitis A Hepatitis A Definition

Hepatitis A is an inflammation of the liver caused by a virus, the hepatitis A virus (HAV). It varies in severity, running an acute course, generally starting within two to six weeks after contact with the virus, and lasting no
, B, and C and HIV HIV (Human Immunodeficiency Virus), either of two closely related retroviruses that invade T-helper lymphocytes and are responsible for AIDS. There are two types of HIV: HIV-1 and HIV-2. HIV-1 is responsible for the vast majority of AIDS in the United States.  were negative, and the patient died on the fourth day of illness. No lesions of the pancreas were observed at autopsy, but a massive liver necrosis was found, and WNV was isolated from a liver sample.

Patient 8 lived near NICD, a WNV-endemic focus with artificial lakes and dams, reed beds, mosquitoes, and large bird colonies. The patient was admitted to the hospital with a 2-day history of headache, fever, nausea, and dizziness. She had marked light sensitivity and terminal meningism. Cerebrospinal fluid cerebrospinal fluid (CSF)

Clear, colourless liquid that surrounds the brain and spinal cord and fills the spaces in them. It helps support the brain, acts as a lubricant, maintains pressure in the skull, and cushions shocks.
 cultures and blood cultures were negative. She had severe arthralgia, and after discharge from the hospital, a rash developed. She made an uneventful recovery. Laboratory investigation of her illness, with consequent recognition of WNV infection, was probably influenced by the fact that she was a relative of a member of staff of NICD; other cases of WNV-induced encephalitis may have been missed.

The dog from which a WNV isolate was obtained in Botswana (Table 1) was missing for 4 days and found in extremis [Latin, In extremity.] A term used in reference to the last illness prior to death.

A causa mortis gift is made by an individual who is in extremis.


in extremis (in ex-tree-miss) adj. facing imminent death.


IN EXTREMIS.
. The dog had severe diarrhea, became comatose co·ma·tose
adj.
1. Of, relating to, or affected with coma.

2. Marked by lethargy; torpid.


comatose (kō´m
, had convulsions Convulsions
Also termed seizures; a sudden violent contraction of a group of muscles.

Mentioned in: Heat Disorders
, and died (34). The dog was initially thought to have rabies, and subsequently a flavivirus isolated from brain tissue was thought to be WESSV, but ultimately was shown to be WNV (34; BJH Barnard, pers. comm.). The horse isolate (Table 1) was obtained from the brain of a 6-month-old Thoroughbred foal foal

a junior horse from birth to one year. May be filly foal, colt foal.


foal ataxia
see enzootic equine incoordination.
 from a farm in Somerset West District, which died after exhibiting signs of nervous disease. The ostrich chick came from the Prince Albert district in the Western Cape Province and was part of a major ostrich farming area where death in young birds at approximately 2 to 3 weeks of age has been a problem in recent years.

Genetic Relationships

A phylogenetic tree was generated from sequence data of 52 WNV isolates from 19 countries, plus KUNV and JEV, by neighbor-joining distance analysis with node values generated by 500 bootstrap replications (Figure). The topology shows two distinct lineages. Lineage 1 includes 16 WNV isolates from 13 countries in Europe, Africa, the Near East, India, and the United States, and KUNV from Australia. The Indian isolate and Kunjin virus appear in lineage 1 as monophyletic monophyletic /mono·phy·let·ic/ (mon?o-fi-let´ik) descended from a common ancestor or stem cell.

mon·o·phy·let·ic
adj.
1. Descended or derived from one original stock or source.
 sister clades. Excluding the Kunjin virus, the maximum nucleotide sequence divergence exhibited in lineage 1 (21.5%), was between the Indian isolate G 167919 and CAR isolate ArB 310. Otherwise, the divergences in lineage 1 ranged from a maximum of 10.6% between CAR isolate ArB 310 and Ivory Coast isolate ArA 3212, to a maximum homology of 99.6% between a Senegal isolate AnD 27875 and Algerian isolate Ar/Djanet.

[FIGURE OMITTED]

Lineage 2 includes 36 isolates from 7 countries in Africa, plus Madagascar. The maximum divergence of nucleotide sequences in lineage 2 (18.9%) was between a bird isolate from Madagascar AnMg 798 and several South African isolates from humans and mosquitoes. In the South African isolates, homology ranged from 86.3% to 100%. In some instances, identical isolates originated from different sources, years of isolation, or regions. The geographic dispersal of similar isolates was illustrated by the approximately 99.6% homology of Senagalese isolate ArD 78016 and several South African isolates. In contrast, geographic overlap of divergent isolates was also evident, as illustrated by the presence of strains from CAR, Senegal, and Kenya in both lineages.

Discussion

The genetic relationships determined for isolates included in this study were consistent with previous publications in which isolates from different parts of the world fell into two lineages; one included a few African isolates and all the European, Asian, and North American North American

named after North America.


North American blastomycosis
see North American blastomycosis.

North American cattle tick
see boophilusannulatus.
 isolates; the second lineage includes African and Madagascan isolates exclusively. In contrast to a previous finding (19), however, we determined that the South African prototype isolate, H 442, belonged to lineage 2 along with the other southern African isolates. Our findings were consistent in tests with material of different mouse passage levels, including material that had been stored at mouse passage level 2 at the time that the original isolation was made, supporting the conclusion that isolate H442 may have been misidentified in a laboratory abroad. Although no isolates from the 1974 South Africa epidemic could be located for inclusion in this study, they probably belong to lineage 2. All 29 southern African isolates tested belonged to lineage 2, even those that were isolated up to 16 years before or up to 19 years after the epidemic.

The results of this phylogenetic study support previous conclusions that the close relationships between certain isolates from different countries and continents are compatible with local and long-range dispersal of the virus by migratory birds. On the other hand, the divergence between isolates of the two lineages indicates that different strains are circulating in some countries, such as CAR, Senegal, and Kenya. No genetic distinction appears between strains circulating in enzootic en·zo·ot·ic
adj.
Prevalent among or restricted to animals of a specific geographic area. Used of a disease.

n.
An enzootic disease.



enzootic

peculiar to or present constantly in a location. See also endemic.
 cycles and human outbreaks, and the wide range of suitable vector hosts probably facilitates the dispersal of WNV. The two extremes of bird migration routes, southern Africa and Eurasia, have divergent strains, whereas the central regions have a mixture of lineages 1 and 2. One possible explanation is that, because of the distances involved, the birds probably could not remain viremic from one extreme of their migratory route to the other. Ultimately viruses will likely pass from one region to the other.

Benign West Nile fever West Nile fever West Nile meningoencephalitis Infectious disease An acute, mosquito-borne flaviviral infection endemic–rarely, epidemic–in the Near East, Africa, former Soviet Union, India Clinical After a 3-6 day incubation, children present with a  in humans is a febrile illness, with myalgia, arthralgia, lymphadenopathy lymphadenopathy /lym·phad·e·nop·a·thy/ (-op´ah-the) disease of the lymph nodes.

angioimmunoblastic lymphadenopathy , angioimmunoblastic lymphadenopathy with dysproteinemia
, and often maculopapular or roseolar rash. Other documented signs and symptoms include nausea, vomiting, diarrhea, conjunctivitis conjunctivitis (kənjəngtəvī`təs), inflammation or infection of the mucosal membrane that covers the eyeball and lines the eyelid, usually acute, caused by a virus or, less often, by a bacillus, an allergic reaction, or an , abdominal pain, pancreatitis, myocarditis Myocarditis Definition

Myocarditis is an inflammatory disease of the heart muscle (myocardium) that can result from a variety of causes. While most cases are produced by a viral infection, an inflammation of the heart muscle may also be instigated by
, and hepatosplenomegaly. Few patients have serious complications such as acute aseptic meningitis aseptic meningitis Infectious disease Nonpurulent meningeal inflammation, which is more common in those < age 30 Etiology Viruses, especially Coxsackievirus and echovirus, circumscribed bacterial infections, hemorrhage, neoplasia–eg leukemia and lymphoma, , encephalitis, or necrotic hepatitis. Although many patients are reported to have severe illness with high case-fatality rates (4% to 13.3%) in recent epidemics in the Northern Hemisphere (16), serious disease occurs in 1% of infections (12,14,36,37). Moreover, most fatalities have been recorded in elderly or immunocompromised immunocompromised /im·mu·no·com·pro·mised/ (-kom´pro-mizd) having the immune response attenuated by administration of immunosuppressive drugs, by irradiation, by malnutrition, or by certain disease processes (e.g., cancer).  patients. The recent outbreaks have raised questions regarding strain variation and the possible emergence of enhanced pathogenicity. However, during a 1957 WNV outbreak in Israel, the death rate was 8.2% (4/49) in a group of elderly patients and 8.4% (35/417) in a epidemic in the same country in 2000 (16). Thus, the perceived virulence of the virus in recent epidemics may partly be because of the emergence or reemergence of existing strains of WNV in geographic locations with immunologically naive populations, high medical alertness, and active surveillance programs. When antigenic and molecular studies failed to demonstrate differences between WNV isolates from patients with hepatitis and benign disease in the CAR, rather than ascribing differences in clinical manifestation to virus strain variation, a new definition of disease spectrum to include liver involvement was considered (10,30).

The fact that no cases of severe disease were recognized in the large numbers of patients seen during the 1974 WNV epidemic in South Africa could indicate that isolates of lineage 2 lack virulence, but little clinical awareness of the pathogenic potential of arboviruses arboviruses (ar´bōvī´rsz),
n.
 in general may also have played a role. The WNV epidemic coincided with the start of a major Rift Valley fever (RVF RVF Rift Valley Fever (febrile disease caused by a virus)
RVF Right Ventricular Failure
RVF Residual Volume Fraction
RVF Rational Valuation Formula (economics) 
) epidemic in South Africa. Only in the next year (1975), when publicity surrounding the occurrence of Marburg disease in the country alerted clinicians to hemorrhagic Hemorrhagic
A condition resulting in massive, difficult-to-control bleeding.

Mentioned in: Hantavirus Infections


hemorrhagic

pertaining to or characterized by hemorrhage.
 disease, were specimens from hospitalized patients with unrecognized infections submitted for laboratory investigation (38). The invesigation proved for the first time that RVF could be a fatal disease in humans. Moreover, the isolations of WNV from patients with severe disease in recent years, including a fatal case of hepatitis and nonfatal mild meningoencephalitis during a quiescent period in virus activity, confirm that strains of lineage 2 can be pathogenic. Diagnosis of these cases owed more to the availability of appropriate laboratory services than to clinical recognition of WNV infection. Clearly, a need for greater awareness of the variety of symptoms, including hepatitis, associated with WNV throughout its distribution range is needed.

The occurrence of encephalitis in a dog in Botswana was followed by a serosurvey and pathogenicity trials in South Africa; the conclusion was that dogs are subject to WNV infection but probably do not play an important role in the epidemiology of the disease (39). The occurrence of WNV in horses in southern Africa is the subject of an ongoing investigation, but the recognition of an equine case of encephalitis remains an isolated event.

Although bird deaths characterized recent epidemics in the Northern Hemisphere, the disease appears to have spared African species in a New York zoo There are several New York Zoos
  • The Bronx Zoo, New York City's main zoo
  • The Buffalo Zoo is a zoo in Buffalo, New York
  • Central Park Zoo, in New York City
  • Queens Zoo, located in New York City
  • The Prospect Park Zoo is located in Prospect Park, Brooklyn, New York
 (19,20,40). Hooded crows had previously been shown to be susceptible to experimental infection with an Egyptian isolate (41), but experimentally infected adult wild birds of 13 species in South Africa had viremic infection without overt disease (24-26). The only death observed from an experimental infection in South Africa occurred in day-old domestic chicks; susceptibility declined with increasing age (PG Jupp, pers. comm.). WNV infection may have been responsible for the deaths observed in young ostrich chicks in the Western Cape Province, where the virus was isolated from a dead chick (Table 1), but many viruses, bacteria, intestinal parasites, and nutritional factors contribute to the death of young birds, and investigations are continuing. In conclusion, increased veterinary awareness of the pathogenic potential of the virus is needed.
Table 1. Twenty-nine southern African West Nile virus isolates

Isolate      Yr of isolation   Passage level         Source

H 442             1958              m2                human
H 912             1964              m4                human
H 1127            1968              m4                human
SPU 101/89        1989              m5                human
SPU 116/89        1989              m3                human
SPU 167/89        1989              m7                human
SA 381/00         2000              m1                human
SA 93/01          2001              m1                human
An 2842           1958              m3         long-billed crombec
An 15228          1968              m4           sentinel pigeon
An 20587          1972              m3          sentinel hamster
An 24630          1977              m5                 dog
94034039          1994              m4               ostrich
9604058           1996              m4                horse
Ar 4064           1962              m2           Culex theileri
Ar 4821           1962              m3           Cx. univittatus
Ar 5254           1963              m4           Cx. univittatus
Ar 5995           1963              m3           Cx. univittatus
Ar 6127           1964              m3           Cx. univittatus
Ar 6129           1964              m4           Cx. univittatus
Ar 6618           1964              m3           Cx. univittatus
Ar 7941           1965              m3           Cx. univittatus
Ar 7943           1965              m2           Cx. univittatus
Ar 7944           1965              m3            Cx. theileri
Ar 8352           1966              m3           Cx. univittatus
Ar 10825          1969              m2           Cx. univittatus
Ar 10864          1969              m2           Cx. univittatus
Ar 10893          1969              m4           Aedes caballus
Ar 20758          1984              m4           Cx. univittatus

                                                       GenBank
Isolate                    Location                 Accession no.

H 442           Ndumo, Kwa-Zulu Natal, RSA (a)        AF514918
H 912            Middelburg, Mpumulanga, RSA          AF514919
H 1127            Johannesburg, Gauteng, RSA          AF514920
SPU 101/89      Bloemfontein, Free State, RSA         AF514921
SPU 116/89          Pretoria, Gauteng, RSA            AF514922
SPU 167/89             Ovambo, Namibia                AF514923
SA 381/00    Naboomspruit, Northern Province, RSA     AF514944
SA 93/01          Johannesburg, Gauteng, RSA          AF514945
An 2842           Ndumo, Kwa-Zulu Natal, RSA           AF51424
An 15228          Olifantsvlei, Gauteng, RSA          AF514925
An 20587              Mopeia, Mozambique              AF514926
An 24630              Gabarone, Botswana              AF514927
94034039       Prince Albert, Western Cape, RSA       AF514928
9604058        Somerset West, Western Cape, RSA       AF514946
Ar 4064           Olifantsvlei, Gauteng, RSA          AF514929
Ar 4821           Olifantsvlei, Gauteng, RSA          AF514942
Ar 5254            Welkom, Free State, RSA            AF514930
Ar 5995           Olifantsvlei, Gauteng, RSA          AF514943
Ar 6127           Olifantsvlei, Gauteng, RSA          AF514931
Ar 6129           Olifantsvlei, Gauteng, RSA          AF514932
Ar 6618           Olifantsvlei, Gauteng, RSA          AF514933
Ar 7941           Olifantsvlei, Gauteng, RSA          AF514934
Ar 7943           Olifantsvlei, Gauteng, RSA          AF514935
Ar 7944           Olifantsvlei, Gauteng, RSA          AF514936
Ar 8352           Olifantsvlei, Gauteng, RSA          AF514937
Ar 10825          Bethulie, Free State, RSA           AF514941
Ar 10864          Bethulie, Free State, RSA           AF514938
Ar 10893          Bethulie, Free State, RSA           AF514939
Ar 20758           Rondebult, Gauteng, RSA            AF514940

(a) RSA, Republic of South Africa
Table 2. Twenty-three West Nile virus isolates, plus Kunjin and
Japanese encephalitis viruses (a)

Isolate         Yr of isolation           Source             Location

HEg 101              1951                  Human               Egypt
TL 443               1952                   na                Israel
G 16919              1955                   na                 India
MP 22                1959         Coquilletidia metallica     Uganda
PaH 651              1965                  Human              France
ArB 310              1967                Culex sp               CAR
ALG-ArDjanet         1968                Culex sp             Algeria
AnMg 798             1978             Coracopsis vasa       Madagascar
AnD 27875            1979           Galago senegalensis       Senegal
ArA 3212             1981               Cx. guiarti         Ivory Coast
HB 83P55             1983                  Human                CAR
ArMg 956             1986          Cx. quinquefasciatus     Madagascar
ArMg 978             1988             Cx. univittatus       Madagascar
HB 6343              1989                  Human                CAR
ArD 78016            1990              Aedes vexans           Senegal
ArD 93548            1993               Cx. neavei            Senegal
097-50               1996               Cx. pipiens           Romania
96-111               1996                   na                Morocco
Isr 98-Goo1          1998                  goose              Israel
PaAn981              1998                   na                 Italy
KN 3829              1998             Cx. univittatus          Kenya
NY-99, 382-99        1999            Chilean flamingo           USA
ArNa1047            unknown           Ae. albothorax           Kenya
Kunjin                na                    na               Australia
JE SA 14             1954               mosquitoes             China

Isolate         GenBank accession no.

HEg 101               AF001568
TL 443                AF205881
G 16919               AF205885
MP 22                 AF001562
PaH 651               AF001560
ArB 310               AF001566
ALG-ArDjanet          AF001567
AnMg 798              AF001559
AnD 27875             AF001569
ArA 3212              AF001561
HB 83P55              AF001557
ArMg 956              AF001564
ArMg 978              AF001574
HB 6343               AF001558
ArD 78016             AF001556
ArD 93548             AF001570
097-50                AF205880
96-111                AF205884
Isr 98-Goo1           AF205882
PaAn981               AF205883
KN 3829               AF146082
NY-99, 382-99         AF196835
ArNa1047              AF001571
Kunjin                AF001572
JE SA 14               U04522

(a) Nucleotide sequence data were obtained from GenBank
for inclusion in the present phylogenetic analysis; na,
not available; CAR, Central African Republic.
Table 3. Southern African human patients from whom West Nile
virus isolates were studied

            Isolate
Patient   designation    Yr    Sex/Age

1            H 442      1958     M/26
2            H 912      1964   M/Ad (a)
3           H 1127      1968     F/Ad
4         SPU 101/89    1989     M/33
5         SPU 116/89    1989     M/27
6         SPU 167/89    1989     M/22
7          AR 381/00    2000     F/68
8          AR 93/01     2001     F/21

Patient                        Syndrome                        Outcome

1                  Fever, rash, myalgia, arthralgia            Survived
2                  Fever, rash, myalgia, arthralgia            Survived
3                  Fever, rash, myalgia, arthralgia            Survived
4         Fever, coagulopathy, hemoglobinuria, renal failure   Survived
5                         Necrotic hepatitis                     Died
6                  Fever, rash, myalgia, arthralgia            Survived
7                  Fever, rash, myalgia, arthralgia            Survived
8                 Fever, rash, myalgia, encephalitis           Survived

(a) Ad, adult.


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Dr. Burt is a specialist in the Special Pathogens Unit at the National Institute for Communicable Diseases, South Africa. She is involved in the diagnosis and investigation of viral hemorrhagic fevers and arboviruses.

Address for correspondence: Felicity J. Burt, Special Pathogens Unit, National Institute for Communicable Diseases, Private Bag X4, Sandringham 2131, South Africa; fax: 27 11 8823741; e-mail: felicityb@niv.ac.za

Felicity J. Burt, * Antoinette A. Grobbelaar, * Patricia A. Leman lem·an  
n. Archaic
1. A sweetheart; a lover.

2. A mistress.



[Middle English leofman, lemman : leof, dear (from Old English
, * Fiona S. Anthony, * Georgina V.F. Gibson, * and Robert Swanepoel *

* National Institute for Communicable Diseases, Sandringham, Johannesburg, South Africa
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