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Molecular epidemiology of adenovirus type 7 in the United States, 1966-2000 (1). (Research).


Genetic variation among 166 isolates of human adenovirus adenovirus

Any of a group of spheroidal viruses, made up of DNA wrapped in a protein coat, that cause sore throat and fever in humans, hepatitis in dogs, and several diseases in fowl, mice, cattle, pigs, and monkeys.
 7 (Ad7) obtained from 1966 to 2000 from the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area.  and Eastern Ontario Eastern Ontario is the region of the Canadian province of Ontario which lies in a wedge-shaped area between the Ottawa and St. Lawrence Rivers. It shares water boundaries with Quebec, to the north and New York State to south.

Population: 1,392,346 (2001), est.
, Canada, was determined by genome restriction analysis. Most (65%) isolates were identified as Ad7b. Two genome types previously undocumented in North America North America, third largest continent (1990 est. pop. 365,000,000), c.9,400,000 sq mi (24,346,000 sq km), the northern of the two continents of the Western Hemisphere.  were also identified: Ad7d2 (28%), which first appeared in 1993 and was later identified throughout the Midwest and Northeast of the United States and in Canada; and Ad7h (2%), which was identified only in the U.S. Southwest in 1998 and 2000. Since 1996, Ad7d2 has been responsible for several civilian outbreaks of Ad7 disease and was the primary cause of a large outbreak of respiratory illness Noun 1. respiratory illness - a disease affecting the respiratory system
respiratory disease, respiratory disorder

adult respiratory distress syndrome, ARDS, wet lung, white lung - acute lung injury characterized by coughing and rales; inflammation of the
 at a military recruit training center. The appearance of Ad7d2 and Ad7h in North America represents recent introduction of these viruses from previously geographically restricted areas and may herald a shift in predominant genome type circulating in the United States.

**********

Human adenoviruses (Ads) comprise 51 serotypes (1); they are ubiquitous and responsible for a wide range of clinical syndromes. Among recognized serotypes, Ad type 7 (Ad7) (and to a lesser extent Ad type 3) is most often associated with severe disease (2). Although Ad7 infections typically result in mild upper respiratory tract respiratory tract
n.
The air passages from the nose to the pulmonary alveoli, including the pharynx, larynx, trachea, and bronchi.


Respiratory tract 
 illnesses and conjunctivitis conjunctivitis (kənjəngtəvī`təs), inflammation or infection of the mucosal membrane that covers the eyeball and lines the eyelid, usually acute, caused by a virus or, less often, by a bacillus, an allergic reaction, or an , infections can also lead to more serious lower respiratory tract Noun 1. lower respiratory tract - the bronchi and lungs
lung - either of two saclike respiratory organs in the chest of vertebrates; serves to remove carbon dioxide and provide oxygen to the blood
 illnesses, disseminated disease Disseminated disease refers to a diffuse disease process, generally either infectious or neoplastic, but sometimes also referring to connective tissue disease.

A disseminated infection, for example, is one that has extended beyond its origin or nidus and involved the
, and death, particularly in infants and persons with underlying immunologic or respiratory compromise (3-7). Ad7 infections have also been associated with diseases of the central nervous system (8,9) and long-term respiratory sequelae sequelae Clinical medicine The consequences of a particular condition or therapeutic intervention  that include bronchiectasis bronchiectasis

Abnormal expansion of bronchi in the lungs. It usually results when preexisting lung disease causes bronchial inflammation and obstruction. Bronchial wall fibres degenerate, and bronchi become dilated or paralyzed, preventing removal of secretions, which
 and hyperlucent lung hy·per·lu·cent lung
n.
The radiographic finding that one lung is less dense than the other normal lung, as from infection or a bronchial foreign body.
 or McLeod syndrome This article is about the genetic disease of the blood, not MacLeod's syndrome (the lung disease).

McLeod syndrome (or McLeod phenomenon) is a genetic disorder that may affect the blood, brain, peripheral nerves, muscle and heart.
 (10).

Ad7 accounts for nearly 20% of all Ads reported to the World Health Organization (11), and family clusters and institutional and communitywide outbreaks of Ad7 disease have been extensively documented (5,12-18). Three types of outbreaks have been described (12): i) outbreaks that occur during the winter months among institutionalized in·sti·tu·tion·al·ize  
tr.v. in·sti·tu·tion·al·ized, in·sti·tu·tion·al·iz·ing, in·sti·tu·tion·al·iz·es
1.
a. To make into, treat as, or give the character of an institution to.

b.
 infants (<2 years of age) that result in high rates of severe illness and death; ii) periodic nonseasonal communitywide outbreaks involving older children and adults with infrequent serious outcomes; and iii) outbreaks of acute respiratory disease Noun 1. respiratory disease - a disease affecting the respiratory system
respiratory disorder, respiratory illness

adult respiratory distress syndrome, ARDS, wet lung, white lung - acute lung injury characterized by coughing and rales; inflammation of the
 among new military recruits. Outbreaks of acute respiratory disease due primarily to Ad7 and Ad4 were an important cause of illness in new military recruits in the United States until live enteric-coated Ad4 and Ad7 vaccines began to be routinely administered in 1971 (19). The recent cessation of production and administration of these vaccines has resulted in a resumption of Ad-associated acute respiratory disease outbreaks at military recruit training centers throughout the United States (20-22).

To facilitate study of the molecular epidemiology molecular epidemiology Molecular medicine An evolving field that combines the tools of standard epidemiology–case studies, questionnaires and monitoring of exposure to external factors with the tools of molecular biology–eg, restriction endonucleases,  of Ad7, a classification system based on restriction enzyme restriction enzyme

Protein (more specifically, an endonuclease) produced by bacteria that cleaves DNA at specific sites along its length. Thousands have been found, from many different bacteria; each recognizes a specific nucleotide sequence.
 analysis of Ad genomic DNA genomic DNA
n.
The full complement of DNA contained in the genome of a cell or organism.
 was devised by Li and Wadell (23) and later revised by Li et al. (24). Their system uses BamHI as the "type" defining enzyme, with different genome types denoted with a character, e.g., "p" for the Ad7 prototype strain, Gomen; and then "a" through "k." Genome types that are further distinguished by restriction pattern with additional selected enzymes are given an Arabic numeral numeral, symbol denoting anumber. The symbol is a member of a family of marks, such as letters, figures, or words, which alone or in a group represent the members of a numeration system.  (e.g., Ad7p, p1, a, al-6). Their system has been widely used to correlate genome types with geographic distribution and pathogenic potential.

Both globally dispersed and geographically restricted genome types of Ad7 have been identified by restriction analysis, and regional shifts or replacements of predominant genome types have been documented on different continents. Among the 3 Ad7 genome types first distinguished by restriction analysis (25), two shown to be serologically distinct (26) were designated Ad7p (Gomen) and Ad7a (S-1058), and a third, designated Ad7b, was thought to be associated with more severe illness (12). Ad7b eventually spread worldwide (27-30), displacing formerly common genome types (i.e., Ad7p, Ad7a, Ad7al-6, Ad7c, and others) that are now rarely detected. Exceptions to this pattern have been reported. In the former Soviet Union, a successive shift from Ad7a and Ad7al-5 to Ad7fl during 1976-1979 and 1986-1988 was reported (31). In South America South America, fourth largest continent (1991 est. pop. 299,150,000), c.6,880,000 sq mi (17,819,000 sq km), the southern of the two continents of the Western Hemisphere. , a shift from Ad7c to Ad7h occurred in 1986 (32), and Ad7h has subsequently caused serious respiratory illness in infants and young children in Chile and Argentina (33,34). In the early 1980s in China, a new genome type, Ad7d (27), replaced Ad7b as the predominant circulating virus. Recent reports suggest that Ad7d and Ad7h have spread beyond their formerly geographically restricted regions. Ad7d was identified in Japan in 1987 (35), and countrywide epidemics of Ad7 that began in 1995 in Korea (18; Hoan-Jong Lee, pers. comm.) and Japan (15, 36) were attributed to Ad7d and a closely related genomic variant, Ad7d2, respectively. Ad7d2 has emerged as the predominant strain circulating in Israel since 1992 (37). Ad7h was first reported outside South America in 1996, in Japan (36,38).

Beginning in the fall of 1998, an outbreak of Ad7 infection occurred at a pediatric pediatric /pe·di·at·ric/ (pe?de-at´rik) pertaining to the health of children.

pe·di·at·ric
adj.
Of or relating to pediatrics.
 chronic-care facility in Chicago and subsequently spread to a tertiary-care hospital, where staff from two clinic units were infected (17). This multi-site outbreak was associated with considerable illness and death among residents of the chronic-care facility. Isolates from this outbreak were identified by restriction enzyme analysis as Ad7d2. The appearance of this new genome type prompted us to study the temporal and geographic distribution of Ad7 genome types in the United States to better characterize the emergence and spread of this virus.

Materials and Methods

Ads

Of 297 Ad field isolates obtained from the Centers for Disease Control and Prevention Centers for Disease Control and Prevention (CDC), agency of the U.S. Public Health Service since 1973, with headquarters in Atlanta; it was established in 1946 as the Communicable Disease Center.  (CDC See Control Data, century date change and Back Orifice.

CDC - Control Data Corporation
) archives, state public health laboratories, university hospitals, and military training centers, 166 confirmed as Ad7 were selected for genome type analysis (Table 1). Of these, 116 were obtained from 1966 to 2000 from civilians in 25 states and eastern Ontario, Canada; 50 were obtained from February 1997 to May 1998 from military recruits attending training centers in five states (20). Isolates were selected to achieve broad geographic and temporal distribution. Because detailed demographic, epidemiologic, and clinical data from patients were limited, they were not included in this report. Most civilian isolates were obtained from individual cases or family clusters of Ad7 disease, ranging from mild upper respiratory illness to severe lower respiratory tract illness and death. Where civilian outbreaks of Ad7 illness were recognized, only one representative isolate was included in the 166 sample for analysis. Approximately 10% of Ad7 isolates from military recruits with respiratory illness were sampled from all five training sites and were selected to be evenly spaced over the designated time period. Reference strains Gomen and S-1058 were obtained from the American Type Culture Collection American Type Culture Collection (ATCC) is a private, not-for-profit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for  (ATCC ATCC American Type Culture Collection, see there , Rockville, MD). Reference isolates of Ad7d2 were obtained from a postmortem postmortem /post·mor·tem/ (post-mort´im) performed or occurring after death.

post·mor·tem
adj.
Relating to or occurring during the period after death.

n.
See autopsy.
 rectal swab from a 4-month-old baby in Israel in 1993, and Ad7h was obtained during a regional outbreak of respiratory illness in Chile in 1998. All Ad isolates were passaged at least once in A549 cells before restriction analysis. Type-specificity of all Ad7 field isolates was confirmed by neutralization neutralization, chemical reaction, according to the Arrhenius theory of acids and bases, in which a water solution of acid is mixed with a water solution of base to form a salt and water; this reaction is complete only if the resulting solution has neither acidic nor  or Ad7 type-specific polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  assay (PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
) (39).

DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 Restriction Analysis

Ad genomic DNA was extracted by a modification of the method of Deryckere and Burgert (40). Briefly, isolates were grown in 75-[cm.sup.2] confluent con·flu·ent
adj.
1. Flowing together; blended into one.

2. Merging or running together so as to form a mass, as sores in a rash.
 flasks of A549 cells until the 4+ stage of cytopathic effect Cytopathic effect (CPE) refers to degenerative changes in cells (especially in tissue culture) associated with the multiplication of certain viruses. When in tissue culture, the spread of virus is restricted by an overlay of agar (or other suitable substance) and thus the  was attained. The contents of the flask were centrifuged at low speed to remove cells, and the supernatant supernatant /su·per·na·tant/ (-na´tant) the liquid lying above a layer of precipitated insoluble material.

supernatant

the liquid lying above a layer of precipitated insoluble material.
 was transferred to an ultra-centrifuge tube and centrifuged for 2 hours at 100,000 x g. The virus pellet was resuspended in 400 [micro]L of Tris buffer (pH 7.4) with 1% sodium dodecyl sulfate Sodium dodecyl sulfate (or sulphate) (SDS or NaDS) (C12H25NaO4S),is an anionic surfactant that is used in household products such as toothpastes, shampoos, shaving foams and bubble baths for its thickening effect and its ability to  and sequentially digested with DNAse free RNAse A (0.1 mg/mL) and proteinase proteinase /pro·tein·ase/ (pro´ten-as?) endopeptidase.

pro·tein·ase
n.
A protease that begins the hydrolytic breakdown of proteins usually by splitting them into polypeptide chains.
 K (0.5 mg/mL). The digest was extracted twice with equal volumes of phenol phenol (fē`nōl), C6H5OH, a colorless, crystalline solid that melts at about 41°C;, boils at 182°C;, and is soluble in ethanol and ether and somewhat soluble in water.  and chloroform/isoamylalcohol (24:1) and once with chloroform/ isoamylalcohol alone. The purified DNA was then precipitated with absolute ethanol and washed once with 75% ethanol, and the pellet was resuspended in 100 [micro]L of d[H.sub.2]0. Enzyme digestions were carried out according to according to
prep.
1. As stated or indicated by; on the authority of: according to historians.

2. In keeping with: according to instructions.

3.
 manufacturer's instructions (Boehringer Mannheim Biochemicals, Indianapolis, IN). DNA from all Ad7 isolates was digested with BamHI and SmaI, and selected isolates were also digested with enzymes BcII, BglI, BglII, BstEII, EcoRI, HpaI, HindIII, SalI, XbaI, and XhoI. Enzyme digests were electrophoresed at 100 volts for 5 hours on 0.8% agarose agarose

more highly purified form of agar with similar uses to agar and widely used in the separation of nucleic acid fragments.
 gels, and the DNA bands were visualized by ethidium bromide Ethidium bromide (sometimes abbreviated as EtBr) is an intercalating agent commonly used as a nucleic acid stain in molecular biology laboratories for techniques such as agarose gel electrophoresis.  staining. Restriction fragment Noun 1. restriction fragment - the fragment of DNA that is produced by cleaving DNA with a restriction enzyme
fragment - a piece broken off or cut off of something else; "a fragment of rock"
 size(s) was interpolated interpolated /in·ter·po·lat·ed/ (in-ter´po-la?ted) inserted between other elements or parts.  from DNA molecular weight standards included in each run. Restriction patterns were compared with previously published profiles (24,37,41,42), and the identification of genome types followed the denomination system of Li et al. (24).

DNA Sequencing DNA sequencing

The determination of the sequence of nucleotides in a sample of DNA.


The hypervariable region hypervariable region

regions present on light and heavy chains of immunoglobulins where most of the variation in amino acid sequences occurs. These are also sites of antigen binding.
 of the hexon protein gene corresponding to nucleotides 403 to 1356 (Gomen), which have been shown to encode the residues that define Ad serotype serotype /se·ro·type/ (ser´o-tip) the type of a microorganism determined by its constituent antigens; a taxonomic subdivision based thereon.

se·ro·type
n.
See serovar.

v.
, was PCR amplified from selected Ad7 isolates as described (43) and sequenced by using the DyeDeoxy Terminator Cycle Sequencing Kit and ABI Abi (ā`bī) [short for Abijah], in the Bible, King Hezekiah's mother.


(Application Binary Interface) A specification for a specific hardware platform combined with the operating system.
 373A automated DNA sequencer A DNA sequencer is an instrument used to automate the DNA sequencing process.

DNA sequencers have become more important due to large genomics projects and the need to increase productivity.
 (Applied Biosystems Applied Biosystems, Inc. (formerly NASDAQ: ABIO) is the original name of a pioneer biotechnology company founded in 1981 in Foster City, California, among the Silicon Valley cities of the southern San Francisco Bay Area. , Foster City, CA). Nucleotide sequences were determined for both PCR product strands. Sequence analysis was performed by using the Wisconsin Package ver. 10.0 (Genetics Computer Group, Madison, WI). Hexon gene sequence data for the reference Ad7d2 strain from Israel were submitted to GenBank (accession number Accession number may mean:
  • Accession number (bioinformatics), a unique identifier given to a biological polymer sequence (DNA, protein) when it is submitted to a sequence database.
 AF321311).

Results

Ad7 Genome Types Identified

DNA restriction analysis of the 166 Ad7 field isolates identified 108 (65%) as Ad7b, 46 (28%) as Ad7d2, 4 (2%) as Ad7h, 3 (2%) as Ad7p, 3 (2%) as Ad7a, and 2 (1%) as Ad7a3. Restriction profiles of representative Ad7b, Ad7d2, and Ad7h isolates for selected endonucleases are shown in the Figure. All U.S. (and eastern Ontario, Canada) Ad7d2 isolates and an Ad7d2 reference strain from Israel (37) gave identical restriction patterns for BamHI, BcII, BglI, BglII, BstEII, EcoRI, HpaI, HindlII, SalI, SmaI, XbaI, and XhoI. Identical restriction profiles were also obtained with four U.S. Ad7h isolates and a 1998 isolate of Ad7h from Chile, which were similar to profiles described for Ad7h strains isolated in Argentina and Chile (formerly designated Ad3f) (41,42,44).

[FIGURE OMITTED]

Ad7 Hexon Gene Sequencing

The hypervariable regions of the hexon gene (corresponding to nucleotides 403 to 1356 of the reference strain Gomen) of 24 temporally and geographically diverse Ad7 field isolates (including 11 Ad7b, 10 Ad7d2, and 3 Ad7h and laboratory strains S-1058, 55142 vaccine, and Gomen) were sequenced and compared with published Ad7 hexon sequences available from GenBank (Table 2). Nucleotide and deduced amino acid amino acid (əmē`nō), any one of a class of simple organic compounds containing carbon, hydrogen, oxygen, nitrogen, and in certain cases sulfur. These compounds are the building blocks of proteins.  alignments of these sequences comprised two major genetic clusters as previously described (26,45): cluster 1, Ad7p (Gomen) and Ad7p1; and cluster 2, Ad7a Ad7b, Ad7c, Ad7d, Ad7d2, Ad7g, and Ad7h. Cluster 2 sequences were highly conserved, with over 98% nucleotide identity, and were generally uncorrelated with genome type. However, a unique Gln substitution for Leu Leu leucine.

Leu
abbr.
leucine



Leu

leucine.
 (codon codon: see nucleic acid.  CTG CTG Cartridge
CTG Center for Technology in Government (SUNY, Albany, New York)
CTG Center for Technology in Government
CTG Computer Task Group (IT consulting company; Buffalo, NY, USA) 
 > CAG CAG 1 Chronic atrophic gastritis 2 Coronary angiography, see there ) at amino acid position 443 of loop 2 of the predicted hexon protein was identified in all 10 Ad7d2 isolates from the United States and Israel; this substitution was also present in published hexon sequences of Ad7d isolates from China (45) and Japan (38).

Temporal Distribution of Ad7 Genome Types

The yearly distribution of the 166 Ad7 genome types is shown in Table 3. Ad7b was the only genome type identified from 1970 through 1992 and was the predominant genome type identified through 2000. Ad7d2 first appeared among 1993 isolates and accounted for approximately 28% of all Ad7 isolates obtained from 1993 to 2000. Four epidemiologically unrelated isolates of Ad7h were identified in 1998 and 2000.

Geographic Distribution of Ad7 Genome Types

Ad7b was identified among isolates from nearly all states (and eastern Ontario) sampled. Ad7d2 was first identified in isolates from Maryland and New York New York, state, United States
New York, Middle Atlantic state of the United States. It is bordered by Vermont, Massachusetts, Connecticut, and the Atlantic Ocean (E), New Jersey and Pennsylvania (S), Lakes Erie and Ontario and the Canadian province of
 in 1993 and thereafter primarily from midwestern and northeastern states, including Wisconsin, Illinois, Kansas, Missouri, Louisiana, South Carolina South Carolina, state of the SE United States. It is bordered by North Carolina (N), the Atlantic Ocean (SE), and Georgia (SW). Facts and Figures


Area, 31,055 sq mi (80,432 sq km). Pop. (2000) 4,012,012, a 15.
, and Ohio, as well as eastern Ontario. Ad7h was only identified among isolates obtained from Texas and Arizona.

Ad7 Civilian Outbreaks, 1996-2000

During this study, we became aware of five separate outbreaks of Ad7 respiratory illness among civilians (Table 4). Four were institutional outbreaks that involved primarily infants and young children with underlying chronic disease that occurred in the fall or summer months of 1996, 1998, 1999, and 2000. A fifth communitywide outbreak of Ad7 in Tennessee, which occurred during March-July 1997, involved previously healthy children (16).Genome type analysis at CDC identified Ad7d2 in three of the four outbreaks where isolates were available. We attributed one outbreak to a novel SmaI restriction variant of Ad7b (Ad7[b.sub.var]) that occurred in New York in 1999 (Jennifer Calder, manuscript in preparation).

Ad7 Gnome Types at Military Recruit Training Centers

In anticipation of increased Ad activity following termination of routine vaccination of new military recruits in 1996, the Naval Health Research Center (NHRC NHRC National Human Rights Commission (India)
NHRC Naval Health Research Center (US Navy)
NHRC Natural Hazards Research Centre (Australia)
NHRC Navrongo Health Research Centre
) in San Diego San Diego (săn dēā`gō), city (1990 pop. 1,110,549), seat of San Diego co., S Calif., on San Diego Bay; inc. 1850. San Diego includes the unincorporated communities of La Jolla and Spring Valley. Coronado is across the bay. , CA, initiated surveillance for new cases of Ad-associated respiratory illness (20) [http://www.nhrc.navy.mil/geis/sites/nhrc.htm]. Clinical specimens collected at five designated training centers (San Diego, CA; San Antonio San Antonio (săn ăntō`nēō, əntōn`), city (1990 pop. 935,933), seat of Bexar co., S central Tex., at the source of the San Antonio River; inc. 1837. , TX; St. Robert, MO; Great Lakes Great Lakes, group of five freshwater lakes, central North America, creating a natural border between the United States and Canada and forming the largest body of freshwater in the world, with a combined surface area of c.95,000 sq mi (246,050 sq km). , IL; and Columbia, SC) from recruits who reported respiratory illness were submitted to NHRC for identification of viral and bacterial pathogens. Of 50 Ad7 isolates, Ad7d2 was the most common genome type identified (58%), followed by Ad7b (34%), Ad7p (6%), and Ad7h (2%) (Table 5). Most Ad7d2 infections were reported from the Naval Recruit Training Center in Great Lakes, IL, where an outbreak of Ad7 (and Ad3) respiratory illness was documented during the fall of 1997 (21). Over 70% of the Ad7 isolates sampled from the Great Lakes Center from September 1997 to February 1998 were identified as Ad7d2. One of four Ad7h isolates identified in this study was obtained from a new recruit at Lackland Air Force Base Lackland Air Force Base (lăk`lənd), U.S. military installation, c.6,835 acres (2,766 hectares), S Tex., W of San Antonio; est. 1941. It is a major air force training center. , in San Antonio.

Discussion

Our study represents the most comprehensive survey to date of Ad7 genome types circulating in the United States and provides a basis for future surveillance studies that can better delineate the disease impact of these viruses.

Before this study, the most comprehensive surveys of Ad7 genomic variants in the United States were conducted by Wadell et al. (27) and Adrian et al. (28) with field isolates of Ad7 collected from 1961 to 1985. These authors identified a diverse group of cocirculating Ad7 genome types (Ad7p, Ad7a, Ad7c, and others) that by the late 1960s to early 1970s were replaced by Ad7b, a change that preceded similar shifts to Ad7b seen in other parts of the world. Our data confirm this observation and show a continued dominance of the Ad7b genome type in the United States. Only one genome type from the earlier period, Ad7p, was still identified among currently circulating strains. We also documented the appearance of two new Ad7 genome types: Ad7d2, which was first identified in specimens collected in 1993 and subsequently detected over a wide geographic area in the eastern half of the United States and Canada; and Ad7h, which was first identified in specimens collected in 1998 in the Southwest.

Both epidemiologic and molecular evidence suggests that Ad7d2 entered the United States as part of its recent spread from evolutionarily related Ad7d strains formerly restricted to China. Ad7d2 shows the highest degree of genetic relatedness to Ad7d, differing by only one BstEII restriction site restriction site
n.
A site in a DNA segment in which the bordering bases are vulnerable to restriction enzymes. Also called cleavage site.
 in pair-wise comigrating restriction fragment analysis with 12 different endonucleases (24,37); it possesses the unique amino acid substitution in the hexon protein also present in Ad7d isolates from China (45) and Japan (38). Ad7d was identified as early as 1980 in Beijing (24) and 2 years later in Changchin (46), and rapidly displaced Ad7b to become the major genome type circulating in China through 1990. Ad7d was identified in Japan during 1987 to 1992 (35) and in Korea in 1995 (18; Hoan-Jong Lee, pers. comm.), and Ad7d2 was the predominant genome type isolated during the 1995-1998 Ad7 epidemic in Japan (15,36). Ad7d2 was subsequently identified in Israel in 1992 (37) and in the United States in this study in 1993.

The emergence and apparent global spread of Ad7d2 are reminiscent of observations for another genome type of serotype 7, Ad7b. Originally described by Wadell and Varsanyi (25), Ad7b was associated with outbreaks of severe respiratory illness in Europe in the 1970s (12). Although first isolated in 1956 from a Paris orphanage outbreak (12,47), subsequent retrospective studies did not identify Ad7b in Europe again until 1969 (27). Before then, the earliest documented occurrence of Ad7b was in China in 1958 (24), where it was the predominant genome type circulating through the early 1980s (24,46). With the exception of Paris, the first appearance of Ad7b outside China was on the U.S. West Coast in 1962 (27). By 1970, Ad7b was the predominant genome type circulating throughout the United States (28) and eventually throughout many parts of the world.

The mechanism(s) underlying the apparent greater fitness of some Ad7 genome types, as reflected by their capacity to displace other circulating strains, remains speculative. Possible explanations include mutations or recombinations that yield strains with increased pathogenicity and therefore greater chance of causing recognized illness, or biological or antigenic changes that enhance transmission or infection compared with other Ad7 genome types. Although there is no conclusive evidence CONCLUSIVE EVIDENCE. That which cannot be contradicted by any other evidence,; for example, a record, unless impeached for fraud, is conclusive evidence between the parties. 3 Bouv. Inst. n. 3061-62.  of differences in pathogenicity between Ad7 genome types, some types appear to be more frequently isolated from healthy carriers (e.g., Ad7p and Ad7a), while others are more often isolated from patients with more serious clinical outcomes (e.g., Ad7b, Ad7c, Ad7d, and Ad7h) (27,34). Some antigenic differences between Ad7 genome types have also been demonstrated; recent studies identified minor differences in neutralization titer titer /ti·ter/ (ti´ter) the quantity of a substance required to react with or to correspond to a given amount of another substance.  between Ad7 prototype strain Gomen (Ad7p) and the vaccine strain 55142 (Ad7a) with rabbit hyperimmune hyperimmune /hy·per·im·mune/ (hi?per-i-mun´) possessing very large quantities of specific antibodies in the serum.

hyperimmune

possessing very large quantities of specific antibodies in the serum.
 antisera (26). In addition, a unique amino acid substitution in the hexon protein that distinguishes Ad7d/Ad7d2 strains from other genome types is predicted to impart substantial changes in the hydrophilicity of the protein and possibly associated antigenic changes (45).

Although Ad7 can be spread directly by the respiratory route, efficiency of transmission is typically lower than for some other respiratory viruses. Efficient spread usually requires crowding, such as that in closed communities like chronic-care facilities, military barracks bar·rack 1  
tr.v. bar·racked, bar·rack·ing, bar·racks
To house (soldiers, for example) in quarters.

n.
1. A building or group of buildings used to house military personnel.
, and day-care centers. Widespread community outbreaks of Ad7 can occur but appear to require low levels of herd immunity herd immunity
n.
1. Resistance to the spread of infectious disease in a group because susceptible members are few, making transmission from an infected member unlikely.

2.
. For example, in Japan, >95% of persons <40 years of age lacked specific antibodies to Ad7 before the countrywide epidemic of Ad7 that began in 1995 (48,49). The most comprehensive recent seroprevalence seroprevalence Immunology The proportion of a population that is seropositive–ie, has been exposed to a particular pathogen or immunogen; the seropositivity of a population is calculated as the number of individuals who produce a particular antibody divided  data on Ad7 in the United States were obtained in 1992 from 364 military basic trainees attending new recruit training centers (50). Approximately 73% of screened trainees lacked specific antibodies to Ad7. In another study to evaluate the potential for use of Ad vectors in gene therapy for cystic fibrosis cystic fibrosis (sĭs`tĭk fībrō`sĭs), inherited disorder of the exocrine glands (see gland), affecting children and young people; median survival is 25 years in females and 30 years in males. , 73.9% of 46 serum specimens collected from 1993 to 1995 from children (median age 4.7 years) were seronegative seronegative /se·ro·neg·a·tive/ (-neg´ah-tiv) showing negative results on serological examination; showing a lack of antibody.

se·ro·neg·a·tive
adj.
 for Ad7 (51).

To achieve rapid spread, a novel genome type presumably pre·sum·a·ble  
adj.
That can be presumed or taken for granted; reasonable as a supposition: presumable causes of the disaster.
 requires an immunologically naive population, greater biological fitness than the indigenous circulating strains, and a means of introduction to the susceptible community. Azar et al. (37) noted that the appearance of Ad7d2 in Israel coincided with the arrival of large numbers of immigrants from the former Soviet Union and Ethiopia during the early 1990s. The global spread of Ad7b in the 1960s and 1970s may have been aided by the movement of unvaccinated U.S. and allied military personnel during the Vietnam War Vietnam War, conflict in Southeast Asia, primarily fought in South Vietnam between government forces aided by the United States and guerrilla forces aided by North Vietnam. . In our study, the appearance of Ad7h in the U.S. Southwest in 1998 may be explained by the emigration emigration: see immigration; migration.  of persons from Ad7h-endemic regions of South America, where communitywide outbreaks of respiratory illness due to Ad7h occurred as recently as 1998 in Chile (Rodrigo Fasce, pers. comm.). However, a more comprehensive survey of Ad7 isolates from Mexico and U.S. states on the Mexican Border would be necessary to substantiate this observation.

The five recognized civilian outbreaks of Ad7 respiratory illness that occurred during 1996-2000, three of which we attributed to genome type 7d2, might have been due to increased reporting as a result of our interest in this study or may represent a real increase in Ad7-associated disease, as occurred in Europe during the early 1970s and in Japan and Korea (12,15,18) beginning in 1995. One unsubstantiated possibility is that the discontinuation dis·con·tin·u·a·tion  
n.
A cessation; a discontinuance.

Noun 1. discontinuation - the act of discontinuing or breaking off; an interruption (temporary or permanent)
discontinuance
 of vaccination of U.S. military recruits for Ad4 and Ad7 in 1996 and the subsequent increase in Ad-associated disease at military bases throughout the United States (20-22) provided a new focus for Ad7 dissemination to civilian populations. A possible example of this is the 1998 outbreak of Ad7d2 illness at a Chicago pediatric chronic-care facility described earlier (17). This outbreak occurred within a few miles of the Naval Training Center in Great Lakes, which had had an outbreak of Ad7d2 the preceding year (21). Most cases of Ad infection at military bases since 1996 have been attributed to Ad4 (20,22), but no comparable outbreaks of Ad4 disease among civilians have been reported. Unlike Ad7, which poses a risk to both civilian and military populations, Ad4 has only infrequently been associated with outbreaks of respiratory illness in civilian populations (2).

Although we identified individual cases of severe lower respiratory tract illness and deaths attributed to Ad7d2 and Ad7h in this study, the possibility that these two genome types may be associated with more severe disease is not yet clear. More extensive clinical and epidemiologic study epidemiologic study A study that compares 2 groups of people who are alike except for one factor, such as exposure to a chemical or the presence of a health effect; the investigators try to determine if any factor is associated with the health effect  is required to adequately address this question. The limited data from infected military recruits suggest no differences in clinical illness between those infected with Ad7d2 and Ad7b (data not shown). Reports of Ad7d2 infections in Israel (37) and Ad7d infections in China (46) also noted no clear differences in severity of disease. Cases of severe pneumonia and neurologic disease were reported from a recent regional epidemic of Ad7d2 in Japan (15), but there was no evidence that these severe cases were more common than those reported for outbreaks involving other Ad7 genome types. Ad7h, a genetically unique recombinant between Ad7 and Ad3 (42), has been linked to increased illness and death in infants in Chile and Argentina, where it is second only to Human respiratory syncytial virus Human respiratory syncytial virus (RSV) is a negative-sense, single-stranded RNA virus of the family Paramyxoviridae, which includes common respiratory viruses such as those causing measles and mumps.  as a cause of severe viral pneumonia viral pneumonia Pulmonology Pneumonia of viral origin, which is more severe in the very young and very old Common pathogens Adenovirus, influenza virus, parainfluenza virus, RSV, rhinovirus, HS, CMV. See Influenza, Pneumonia, Respiratory syncytial virus.  in infants and young children (34,52). However, in this study, too few cases of Ad7h infection were identified to assess differences in disease severity.

In conclusion, our study documents the recent appearance in the United States of two new Ad7 genome types, Ad7d2 and Ad7h, and provides additional evidence of the global spread of these formerly geographically restricted viruses. The possibility that these genome types may be associated with more severe disease makes it prudent to monitor their spread and associated disease.
Table 1. Human adenovirus 7 (Ad7) field isolates from the United
States and Canada, 1966-2000
                                                No. Ad7
Location                   Isolation year(s)    isolates

Canada

   Eastern Ontario            1999, 2000           3

United States

   Alabama                    1985, 1986           2

   Arizona                    1995, 1998           3

   California (a)                1997              1

   California                1981-4, 1987,         15
                              1990, 1992,
                              1995, 1996

   Colorado                      1987              1

   Florida                    1986, 1996           2

   Georgia                       1996              1

   Illinois (a)                1996-98            28

   Illinois                      1997              2

   Iowa                          2000              1

   Kansas                     1995, 1997           3

   Louisiana                     1996              2

   Maine                         1981              1

   Maryland                 1991, 1993-95          16

   Massachussetts             1998, 1999           2

   Michigan                      1986              1

   Mississippi                   1986              1

   Missouri (a)                  1997              9

   Missouri                1966, 1998, 1999        8

   New York               1970, 1985, 1990,        31
                              1991, 1993,
                          1995-97, 1999, 2000

   Ohio                   1993-95, 1997, 1998      10

   South Carolina (a)         1997, 1998           11

   South Carolina                1998              1

   South Dakota                  1987              1

   Tennessee                     1997              2

   Texasa                        1998              1

   Texas                      1999, 2000           2

   Virginia                      1985              1

   Washington                    1996              1

   Wisconsin                  1996, 1998           3

North America (total)          1966-2000          166

(a) Ad7 isolates obtained from military recruit training centers.
Table 2. Human adenovirus 7 (Ad7) field isolates and laboratory
strains used for hexon gene sequence comparisons

                                         Isolation   Accession
ID             Genome type   Location      year        no.

S-1058             7a           USA        1955      af053085
55142 vaccine      7a3          USA        1963      af065067
BC30               7b          China       1958       u75951
BC14               7b          China       1965       u77390
KCH4               7b         England      1973       u77391
v2026              7b         USA, MI      1986
v2124              7b         USA, SD      1987
2000017657         7b         USA, MD      1991
99026790           7b         USA, OH      1993
2000017667         7b         USA, MD      1994
2000026630         7b         USA, NY      1996
Kn T96-0620        7b         USA, CA      1996      af065068
99018141           7b         USA, MO      1997
2000016352         7b         USA, IL      1997
2000016376         7b         USA, SC      1997
2000016361         7b         USA, MO      1997
2000016376         7b         USA, SC      1997
37300              7c         Sweden       1964       u75952
BC3655             7d          China       1981       u77392
BC4492             7d          China       1984       u75953
BC4609             7d          China       1984       u77393
BC8488             7d          China       1984       u77394
383 (b)            7d          Japan       1992      af053086
Ba1 (b)            7d          Japan       1995      af053087
2000017663         7d2        USA, MD      1993
2000026865         7d2        Israel       1993      af321311
2000017669         7d2        USA, MD      1994
2000026621         7d2        USA, NY      1995
99026817           7d2        USA, OH      1995
2000016333         7d2        USA, IL      1997
2000016364         7d2        USA, MO      1997
2000016375         7d2        USA, SC      1997
98034168           7d2        USA, IL      1998
2000017983         7d2        USA, WI      1998
BC25               7g          China       1985       u75954
87-922             7h        Argentina     1987       u75956
990179044          7h          Chile       1998
99018196           7h         USA, AZ      1998
2000016378         7h         USA, TX      1998
Gomen              7p           USA        1954       z48571
BC3423             7p1         China       1981       u75955

ID                           Sequence source (a)

S-1058         Inada & Mukoyama, direct submission; CDC
55142 vaccine      Crawford-Miksza et al. (26); CDC
BC30                     Li & Wadell (45)
BC14                     Li & Wadell (45)
KCH4                     Li & Wadell (45)
v2026                           CDC
v2124                           CDC
2000017657                      CDC
99026790                        CDC
2000017667                      CDC
2000026630                      CDC
Kn T96-0620        Crawford-Miksza et al. (26)
99018141                        CDC
2000016352                      CDC
2000016376                      CDC
2000016361                      CDC
2000016376                      CDC
37300                    Li & Wadell, (45)
BC3655                   Li & Wadell, (45)
BC4492                   Li & Wadell, (45)
BC4609                   Li & Wadell (45)
BC8488                   Li & Wadell (45)
383 (b)                 Hashido et al. (38)
Ba1 (b)                 Hashido et al. (38)
2000017663                      CDC
2000026865                      CDC
2000017669                      CDC
2000026621                      CDC
99026817                        CDC
2000016333                      CDC
2000016364                      CDC
2000016375                      CDC
98034168                        CDC
2000017983                      CDC
BC25                     Li & Wadell (45)
87-922                   Li & Wadell (45)
990179044                       CDC
99018196                        CDC
2000016378                      CDC
Gomen          Li et al., direct submission; CDC
BC3423                   Li & Wadell (45)

(a) Sequencing and restriction analysis performed at Centers for
Disease Control and Prevention (CDC) or obtained from previously
published sources. Published sequences of Ad7 laboratory strains
S-1058, Gomen, and 55142 vaccine confirmed at CDC.

(b) ad7 strains 383 and Bal were originally reported as Ad7d with
a "different restriction pattern by BstEII" (38).
Table 3. Yearly distribution of 166 human adenovirus 7 (Ad7)
genome types, United States and Canada, 1966-2000

Genome type    1966-1969   1970-1992   1993   1994   1995

7p                 0           0        0      0      0
7a                 3           0        0      0      0
7a3                2           0        0      0      0
7b                 0          31        6      4      14
7[b.sub.var]       0           0        0      0      0
7d2                0           0        2      1      3
7h                 0           0        0      0      0
Total              5          31        8      5      17

Genome type    1996   1997 (a)   1998 (a)   1999   2000   Total

7p              0        3         0          0      0       3
7a              0        0         0          0      0       3
7a3             0        0         0          0      0       2
7b              8       26         4          6      8      107
7[b.sub.var]    0        0         0          1      0       1
7d2             4       32         2          0      2       46
7h              0        0         3          0      1       4
Total           12      61         9          7      11     166

(a) Data include 50 Ad7 isolates collected in 1997 (47 isolates)
and 1998 (3 isolates) from military recruit training centers
(Table 4).
Table 4. Recognized civilian outbreaks of human adenovirus 7 (Ad7)
respiratory disease, United States, 1996-2000

Location                Date                  Setting

Houma, LA (b)           June 1996   Pediatric chronic-care facility

Memphis, TN (c)         Mar 1997          Community acquired

Chicago, IL (d)         Nov 1998    Pediatric chronic-care facility
                                        and tertiary hospital

New York City, NY (e)   Oct 1999        Chronic-care facility
                                      formentally disabled persons

Des Moines, IA (f)      Oct 2000    Pediatric chronic-care facility

                           No.       No.     No. Ad7
Location                cases (a)   deaths   isolates

Houma, LA (b)              13         7         4

Memphis, TN (c)            47         1         26

Chicago, IL (d)            31         8         11
                           37         0         6

New York City, NY (e)      33         7         15

Des Moines, IA (f)         20         4         9

                            No.          Genome
Location                restriction       type

Houma, LA (b)                2            7d2

Memphis, TN (c)              0             nd

Chicago, IL (d)             11            7d2
                             6             "

New York City, NY (e)       15        7[b.sub.var]

Des Moines, IA (f)           9            7d2

(a) Suspected and confirmed cases of Ad7 respiratory disease.

(b) Robert Gohd, Children's Hospital, New Oreleans, LA (pers. comm.).

(c) Mitchell et al. (16).

(d) Gerber et al. (17).

(e) Jennifer Calder, The Mailman School of Public Health, Columbia
University, New York, NY (manuscript in preparation).

(f) Michael Buley, Iowa Dept of Public Health, Des Moines, IA
(pers. comm.).
Table 5. Genome types of 50 human adenovirus 7 (Ad7) isolates
obtained from military recruit training centers, Feb 1997-May 1998 (a)

Genome type
                                  No. Ad     No. Ad      No.
Training center                   isolates    typed    Ad7 (%)

Marine Corps Recruit Depot, San     129        128      10 (8)
Diego, CA

Lackland Air Force Base, San          1          1       1 (100)
Antonio, TX

Fort Leonard Wood, St. Robert,      266        260      29 (11)
MO

Naval Recruit Training Center,      632        592     396 (67)
Great Lakes, IL

Fort Jackson, Columbia, SC          786        738      66 (9)

Total                             1,814      1,719     502 (29)

                                     No.        Dates of
Training center                   restriction   isolation

Marine Corps Recruit Depot, San       1        April 1997
Diego, CA

Lackland Air Force Base, San          1        April 1998
Antonio, TX

Fort Leonard Wood, St. Robert,        9        Feb 1997 to Nov
MO                                                 1997

Naval Recruit Training Center,       28        Sept 1997 to May
Great Lakes, IL                                     1998

Fort Jackson, Columbia, SC           11        June 1997 to April
                                                    1998

Total                                50

                                     Genome type

Training center                   7b   7d2   7p   7h

Marine Corps Recruit Depot, San               1
Diego, CA

Lackland Air Force Base, San                       1
Antonio, TX

Fort Leonard Wood, St. Robert,     4     5
MO

Naval Recruit Training Center,     8    20
Great Lakes, IL

Fort Jackson, Columbia, SC         5     4    2

Total                             17     29    3   1

(a) Isolation and serotyping of Ads conducted at the Naval
Health Research Center, San Diego, CA.


Acknowledgments

We thank those who kindly provided human adenovirus isolates for this study: Richard Buller, Nando Chatterjee, Ronald Cheshier, Pam Colarusso, Rodrigo Fasce, Steve LaCroix, Jane LaFlash, Gary Leonardi, Marrietta Malasig, Ella Mendelson, Roswitha Milk, Laura Montague, Mahin Park, MaryAnn Patterson, Iqbal Poshni, Bill Reimels, Syed Sherazi, Suzanne Spencer, Marsha Tolson, and Cindi Ventrola.

(1) These data were presented in part at the International Conference on Emerging Infectious Diseases The ICEID or International Conference on Emerging Infectious Diseases is a conference for public health professionals on the subject of emerging infectious diseases. , July 16-19, 2000, Atlanta, GA.

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(51.) Piedra PA, Poveda GA, Ramsey B, McCoy K, Hiatt P. Incidence and prevalence of neutralizing antibodies to the common adenoviruses in children with cystic fibrosis: implication for gene therapy with adenovirus vectors. Pediatrics 1998; 101:1013-9.

(52.) Videla C, Carballal G, Misirlian A, Aguilar M. Acute lower respiratory infections due to respiratory syncytial virus respiratory syncytial virus (sĭnsĭsh`əl): see cold, common.  and adenovirus among hospitalized children from Argentina. Clin Diagn Virol 1998; 10:17-23.

Dean D. Erdman, * Wanhong Xu, * Susan I. Gerber, ([dagger]) Gregory C. Gray, ([double dagger]) David Schnurr, ([section]) Adriana E. Kajon, ([paragraph]) and Larry J. Anderson *

* Centers for Disease Control and Prevention, Atlanta, Georgia, USA;

([dagger]) Chicago Department of Public Health, Chicago, Illinois, USA;

([double dagger]) Naval Health Research Center, San Diego, California “San Diego” redirects here. For other uses, see San Diego (disambiguation).
San Diego is a coastal Southern California city located in the southwestern corner of the continental United States. As of 2006, the city has a population of 1,256,951.
, USA;

([section]) California Department of Health Services Department of Health Services may refer to:
  • Los Angeles County Department of Health Services
  • California Department of Health Services a California state agency
, Berkeley, California, USA; and

([paragraph]) Lovelace Respiratory Research Institute, Albuquerque, New Mexico “Albuquerque” redirects here. For other uses, see Albuquerque (disambiguation).
Albuquerque (pronounced [ˈæl.bə.kɚ.kiː], Spanish: [al.βu.
, USA

Dr. Erdman is Acting Chief of the Respiratory Virus Section in the Division of Viral and Rickettsial Diseases, Centers for Disease Control and Prevention. His interests include development of diagnostic assays and molecular epidemiology of respiratory viruses.

Address for correspondence: Dean D. Erdman, Respiratory and Enteric Viruses Branch, Division of Viral and Rickettsial Diseases, Centers for Disease Control and Prevention, Mailstop G-09, Atlanta, GA 30333, USA; fax: 404-639-1307; e-mail: ddel@cdc.gov
COPYRIGHT 2002 U.S. National Center for Infectious Diseases
No portion of this article can be reproduced without the express written permission from the copyright holder.
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Author:Anderson, Larry J.
Publication:Emerging Infectious Diseases
Article Type:Statistical Data Included
Geographic Code:1USA
Date:Mar 1, 2002
Words:6743
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