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Modeling control strategies of respiratory pathogens.


Effectively controlling infectious diseases infectious diseases: see communicable diseases.  requires quantitative comparisons of quarantine quarantine (kwŏr`əntēn), isolation of persons, animals, places, and effects that carry or are suspected of harboring communicable disease. , infection control precautions, case identification and isolation, and immunization immunization: see immunity; vaccination.  interventions. We used contact network epidemiology to predict the effect of various control policies for a mildly contagious disease contagious disease
n.
See communicable disease.
, such as severe acute respiratory syndrome Severe Acute Respiratory Syndrome (SARS) Definition

Severe acute respiratory syndrome (SARS) is the first emergent and highly transmissible viral disease to appear during the twenty-first century.
, and a moderately contagious disease, such as smallpox smallpox, acute, highly contagious disease causing a high fever and successive stages of severe skin eruptions. The disease dates from the time of ancient Egypt or before. . The success of an intervention depends on the transmissibility trans·mis·si·ble  
adj.
That can be transmitted: transmissible signals.



trans·mis
 of the disease and the contact pattern between persons within a community. The model predicts that use of face masks Face mask
The simplest way of delivering a high level of oxygen to patients with ARDS or other low-oxygen conditions.

Mentioned in: Adult Respiratory Distress Syndrome
 and general vaccination will only moderately affect the spread of mildly contagious diseases contagious diseases: see communicable diseases. . In contrast, quarantine and ring vaccination Noun 1. ring vaccination - administering vaccine only to people in close contact with an isolated infected patient; prevents the spread of a highly infectious disease by surrounding the patient with a ring of immunization  can prevent the spread of a wide spectrum of diseases. Contact network epidemiology can provide valuable quantitative input to public health decisionmaking, even before a pathogen Pathogen

Any agent capable of causing disease. The term pathogen is usually restricted to living agents, which include viruses, rickettsia, bacteria, fungi, yeasts, protozoa, helminths, and certain insect larval stages.
 is well characterized.

**********

Public concern regarding emerging infectious diseases An emerging infectious disease (EID) is an infectious disease whose incidence has increased in the past 20 years and threatens to increase in the near future. EIDs include diseases caused by a newly identified microorganism or newly identified strain of a known microorganism (e.g.  is on the rise. The 21st century began with the emergence or reemergence of zoonotic diseases Zoonotic diseases
Diseases caused by infectious agents that can be transmitted between (or are shared by) animals and humans. This can include transmission through the bite of an insect, such as a mosquito.

Mentioned in: West Nile Virus
 like severe acute respiratory syndrome (SARS) (1), avian influenza avian influenza: see influenza.  (2), monkeypox infection (3), West Nile virus West Nile virus, microorganism and the infection resulting from it, which typically produces no symptoms or a flulike condition. The virus is a flavivirus and is related to a number of viruses that cause encephalitis.  disease (4), mad cow disease mad cow disease: see prion.
mad cow disease
 or bovine spongiform encephalopathy (BSE)

Fatal neurodegenerative disease of cattle. Symptoms include behavioral changes (e.g.
 (5), anthrax anthrax (ăn`thrăks), acute infectious disease of animals that can be secondarily transmitted to humans. It is caused by a bacterium (Bacillus anthracis  due to bioterrorist attacks (6), and unusual influenza epidemics influenza epidemic

caused 500,000 deaths in U.S. alone (1918–1919). [Am. Hist.: Van Doren, 403]

See : Disease
 (7). In addition to these new threats, public health officials lace a large number of disease outbreaks every year in hospitals, schools, and other small communities. While development of vaccines and diagnostic tools proceeds at an unprecedented pace, development of tools for determining optimal intervention strategies lags behind.

In response to this problem, we have found that mathematical models of disease transmission can be used to evaluate and optimize control strategies. Such quantitative predictions can be empirically tested through randomized ran·dom·ize  
tr.v. ran·dom·ized, ran·dom·iz·ing, ran·dom·iz·es
To make random in arrangement, especially in order to control the variables in an experiment.
 comparative trials, and mathematical models increasingly contribute to public health decisions regarding policy and intervention (8-13).

We use contact network epidemiology to compare intervention strategies for airborne (2) infectious diseases, including emerging diseases such as SARS, for which epidemiologic data are limited. These methods are based on explicit mathematical models of the heterogeneous patterns of interpersonal contacts that underlie disease transmission in a community, be it a hospital, school, or city (12-21). This approach differs from fully mixed compartmental models that assume that each person can infect every other person with equal probability (8). Some compartmental models have been modified to include population heterogeneity het·er·o·ge·ne·i·ty
n.
The quality or state of being heterogeneous.



heterogeneity

the state of being heterogeneous.
 and have provided insights into the long-term effects of intervention strategies (8-11). For communities with extensive heterogeneity in contact patterns, however, network models more explicitly capture patterns of disease transmission and thus enable more accurate and detailed predictions of the effect of control measures on the magnitude and distributions of outbreaks.

Methods

Contact network models capture and estimate interpersonal contacts that lead to disease transmission within a community (22). Contacts can take place within households, schools, workplaces, hospitals, and other public venues. Each person in a community is represented as a vertex A corner point of a triangle or other geometric image. Vertices is the plural form of this term. See vertex shader.  in the network, and each contact between 2 people is represented as an edge connecting the vertexes. The number of edges emanating from a vertex is the degree of that vertex. This quantity indicates the number of contacts who potentially transmit disease to or acquire disease from a person. The variation of degree across the entire network, i.e., the degree distribution, is fundamental to determining the probability for spread of disease through a network of contacts. Given the degree distribution of the contact network, one can analytically predict the fate of an outbreak.

Contact network epidemiology allows us to assess the vulnerability of a population to an infectious disease Infectious disease

A pathological condition spread among biological species. Infectious diseases, although varied in their effects, are always associated with viruses, bacteria, fungi, protozoa, multicellular parasites and aberrant proteins known as prions.
 on the basis of the structure of the network (its degree distribution) and on the average transmissibility (T) of the disease (12,13). T is the average probability that transmission will occur from an infected person (vertex) to an uninfected person. This parameter summarizes multiple aspects of transmissibility, including the contact intensity between persons, duration of infectiousness, and the host's susceptibility to the infectious pathogen (12,13).

Contact Network Parameter Estimation

We built an urban contact network model with 2,000 households with an average household size of 2.6 (5,154 persons) based on demographic information for the Greater Vancouver Regional District, British Columbia British Columbia, province (2001 pop. 3,907,738), 366,255 sq mi (948,600 sq km), including 6,976 sq mi (18,068 sq km) of water surface, W Canada. Geography
, Canada. We used publicly available data from sources such as Statistics Canada to estimate the distribution of ages, household sizes, school and classroom sizes, hospital occupancy Noun 1. hospital occupancy - occupancy rate for hospitals
occupancy rate - the percentage of all rental units (as in hotels) are occupied or rented at a given time
, workplaces, and public spaces (23-27).

Most of the edges in the network are undirected, meaning that transmission may occur in either direction (black edges in Figure 1). For example, 2 persons living in the same household will have equal opportunities to infect each other. The remaining edges are directed, meaning that a person may infect another person but the converse is not true (gray edges in Figure 1). For example, suppose person A is healthy and has no reason to go to the hospital until he or she is infected with SARS. At that point, person A will likely come into contact with and potentially spread SARS to caregivers at the hospital. In contrast, if a caregiver at the hospital acquired SARS while person A remained healthy in the community, then no opportunity would exist for transmission in the opposite direction. To model the directional flow of infected patients into a hospital, we include directed edges from persons in the population at large to caregivers in the hospital.

[FIGURE 1 OMITTED]

In an urban setting, not all encounters are equally likely to lead to disease transmission. We capture this heterogeneity in 2 ways. First, in the simulated urban network, the probability of a contact between 2 persons depends on the location and nature of their overlapping daily activities. For example, persons in the same household are connected to each other with probability 1, while persons who encounter each other in a public space are connected to each other with a probability from 0.003 to 0.300. Second, after these connections are determined, we assign a distinct transmissibility, [T.sub.ij], for each pair of connected persons i and j, that depends on the nature of their contact. For a given disease, the distribution of transmissibilities is based on empiric estimates for the diversity in infectious periods infectious period The period during which an infected person can transmit a pathogen to a susceptible host  and the per day probability of transmission between persons who come into contact with each other. For more details, please refer to the online Appendix, available from http://www.cdc.gov/ncidod/EID/vol11no08/04-0449_ app.htm.

Modeling Control Strategies

In any given network exists a critical transmissibility value, [T.sub.c], which indicates whether a large-scale epidemic is probable. Any disease with average transmissibility <[T.sub.c] cannot cause sustained transmission within a population and will thus be limited to small outbreaks. Such diseases die out because of the probabilistic (probability) probabilistic - Relating to, or governed by, probability. The behaviour of a probabilistic system cannot be predicted exactly but the probability of certain behaviours is known. Such systems may be simulated using pseudorandom numbers.  nature of transmission before the disease has a chance to spread to the population at large. In this case, we can mathematically predict the expected size of small outbreaks, s. Diseases with average transmissibility >[T.sub.c] will spark large-scale epidemics with probability S, which can also be estimated. The value of [T.sub.c] depends on the contact patterns within a community. Roughly speaking, when abundant opportunities exist for transmission, disease will spread easily, and the epidemic threshold will be low. The equations for s, S, and [T.sub.c], which are entirely in terms of the degree distribution and average transmissibility T, are presented in the online Appendix.

The epidemic potential of disease is commonly estimated by using the basic reproductive number [R.sub.0], the number of secondary infections arising from a single infection in a relatively naive population (8,28). This quantity is linearly related to the transmissibility of the disease, i.e., [R.sub.0] = [gamma]T, where [gamma] depends on the structure of the network (equations 1 and 8 in online Appendix). When T is at the epidemic threshold (T = [T.sub.c]), then [R.sub.0] = 1. Public health interventions health intervention Health care An activity undertaken to prevent, improve, or stabilize a medical condition  aim to reduce the number of new infected cases, ideally decreasing the effective reproductive number of the disease below the epidemic threshold, [R.sub.eff]< 1.

The difference between average transmissibility T and the basic reproductive ratio [R.sub.0] is important. While both have threshold values that distinguish epidemic from nonepidemic scenarios ([R.sub.0] = 1 and T = [T.sub.c]), T is determined by the transmission characteristics of the pathogen and the nature of human interactions, but not the numbers of contacts in a community, whereas [R.sub.0] depends on all of these factors, particularly on the numbers of interactions within the community. For example, consider a single airborne pathogen spreading through a hospital, where abundant close contacts exist, and through a rural community, where close contacts are rare. The per contact probabilities of transmission ([T.sub.ij]) may be similar in these settings because they are determined by the pathogenesis of the strain in the host, while the numbers of contacts are different. Therefore, the average transmissibility T will be similar in the 2 locations, while [R.sub.0] will be substantially higher in the hospital than in the rural setting.

The heterogeneous spread of SARS worldwide suggested context-dependent patterns of transmission with relatively rapid spread through hospitals and relatively slow spread through communities (29). A notable exception to this pattern, the large cluster of SARS cases outside a healthcare setting in the Amoy Gardens Amoy Gardens (Chinese: 淘大花園; Jyutping: tou4 daai6 faa1 jyun4; Pinyin: táo dà huā yuán) is a high-density middle-class housing estate in Hong Kong completed from 1980 - 1987.  apartment complex in Hong Kong Hong Kong (hŏng kŏng), Mandarin Xianggang, special administrative region of China, formerly a British crown colony (2005 est. pop. 6,899,000), land area 422 sq mi (1,092 sq km), adjacent to Guangdong prov. , seems to have spread through aerosolization of virus-laden sewage rather than direct person-to-person contact (30). When contact patterns within a community are extremely heterogeneous, explicitly modeling community structure and T makes more sense than assuming a universal [R.sub.0]. We take this approach to evaluating disease control strategies in an urban setting (31).

A primary public health goal is to bring disease from a value above an epidemic threshold to a value below the threshold, thereby eliminating the threat of a large-scale epidemic. This goal can be achieved through interventions that directly affect the transmissibility of the pathogen (T) or through interventions that modify patterns of interaction so that the epidemic threshold ([T.sub.c]) is increased. We call these 2 forms of intervention transmission-reduction and contact-reduction, respectively, and depict them graphically in Figure 2. The solid curves represent the predicted size of an outbreak and the probability of an epidemic for an entire spectrum of T from 0 to 1 in an urban setting. All airborne pathogens have a transmissibility value within this range; 0 = no transmission, and 1 = every contact leads to transmission. Thus, any disease can be mapped to a unique value on the curve.

[FIGURE 2 OMITTED]

In our simulated urban contact network, the critical transmissibility threshold is [T.sub.c] = 0.048. An outbreak of disease with T = 0.245 will almost certainly spark an epidemic in the absence of intervention (top circle in Figure 2). This value of T is equivalent to an [R.sub.0] = 5 for this contact network and thus corresponds to a moderately infectious disease like smallpox (32,33). A successful intervention either reduces T so that it lies below [T.sub.c] (Figure 2A) or modifies the structure of the network so that [T.sub.c] rises above T (Figure 2B). The first strategy can be achieved by interventions that reduce the probability of transmission per contact, such as face masks, gloves, gowns, handwashing, and other infection control precautions that prevent the exchange of respiratory droplets without eliminating contact.

The second strategy involves modifying the contact network itself. Interventions such as quarantine and closing schools and other public places effectively eliminate potential contacts (edges) between persons. Interventions such as immunization and the prophylactic prophylactic /pro·phy·lac·tic/ (pro?-fi-lak´tik)
1. tending to ward off disease; pertaining to prophylaxis.

2. an agent that tends to ward off disease.


pro·phy·lac·tic
n.
 use of antibacterial antibacterial /an·ti·bac·te·ri·al/ (-bak-ter´e-al) destroying or suppressing growth or reproduction of bacteria; also, an agent that does this.

an·ti·bac·te·ri·al
adj.
 or antiviral drugs Antiviral Drugs Definition

Antiviral drugs are medicines that cure or control virus infections.
Purpose

Antivirals are used to treat infections caused by viruses.
 are tantamount tan·ta·mount  
adj.
Equivalent in effect or value: a request tantamount to a demand.



[From obsolete tantamount, an equivalent, from Anglo-Norman
 to removing persons (vertexes) from the contact network and therefore also alter the network structure. We mathematically assess the effect of such strategies by deleting edges and vertexes from the contact network and predicting the new probability of an epidemic and expected distribution of cases within the community.

Results

We evaluated a variety of commonly implemented public health interventions by changing the contact patterns within the network, transmissibility of the disease, or both. For each strategy, we calculated several epidemiologic quantities: 1) the epidemic threshold, [T.sub.c], which may be raised by contact-reduction interventions, 2) the transmissibility of the disease, T, which may be reduced by transmission-reduction interventions, 3) if T<[T.sub.c], the expected size of a small outbreak, s, 4) if T>[T.sub.c], the probability of a large-scale epidemic, [S.sub.prob], and 5) if T>[T.sub.c], the expected size of an epidemic, S, should one occur. Based on calculations of these quantities, Figures 3-5 report the effect of various interventions applied to a moderately contagious disease just above the epidemic threshold (left panel), where we believe SARS to lie (34) and a moderately infectious disease such as smallpox (right panel). Gray entries correspond to unsuccessful interventions; white entries indicate strategies that are predicted to successfully move the pathogen below the epidemic threshold and thereby prevent a large-scale epidemic.

Transmission Reduction

Although general use of face masks may have a moderate effect, its success hinges on correct use and level of compliance. For instance, face masks that are 75% effective will only prevent a large-scale epidemic of a SARS-like disease if [greater than or equal to] 60% of the general population complies perfectly (Figure 3). If persons use face masks incorrectly or only partially, this intervention will be less likely to protect persons and the population as a whole. For moderately contagious diseases like smallpox, face masks alone will not protect large urban areas from an epidemic. Figure 3 also suggests that use of face masks by healthcare workers, while important for personal protection, offers limited protection to the population and does not predictably preclude an epidemic.

One of the factors that influences the transmissibility T is the duration of infectiousness. The duration of effective infectiousness may be shortened, but not eliminated, by isolating persons immediately after diagnosis. Although isolating an infected person will physically remove him from the network, the person may already have had a chance to infect others before being identified and isolated. For example, an infectious person who is isolated after the second day of a 6-day infectious period will have had 2 days in which disease could be transmitted to close contacts. Thus, isolation can be effective for diseases with low transmissibility but only if case identification occurs early in the infectious period. For such diseases, an isolation strategy that on average reduces the infectious period by 50% will prevent a large-scale epidemic (Figure 4). Isolation will not preclude an epidemic for a highly transmissible transmissible /trans·mis·si·ble/ (trans-mis´i-b'l) capable of being transmitted.

trans·mis·si·ble
adj.
Capable of being conveyed from one person to another.
 disease unless clinical and diagnostic tools can be applied early and confidently, which may not be the case for an emerging infectious disease.

Contact Reduction

Contacts between infected and susceptible persons can be eliminated during an outbreak through measures such as quarantine, closing public venues, and ring vaccination, or they can be eliminated preventatively through general vaccination strategies. Figure 4 predicts that simultaneous case-patient isolation and quarantine of close contacts substantially improves containment. For a mildly contagious disease, an outbreak can be controlled with a combination of isolation that reduces the infectious period by 25% and quarantine that successfully sequesters 30% of all case-patient contacts. Much more rigorous isolation and quarantine are required for a highly contagious disease. Such interventions require a strong surveillance infrastructure, reliable rapid diagnostic tests, and social acceptance.

In Figure 6, we show that such predictions can readily be translated into values of [R.sub.eff]. Interventions that bring a population under the epidemic threshold are those that decrease [R.sub.eff] below 1. We emphasize that the predictions in Figures 4 and 6 are specific to the underlying model of contact patterns in an urban setting and that, contrary to common interpretations, [R.sub.eff] (or [R.sub.0]) is not a universal constant but instead critically depends on structure of the host community.

Vaccination

A general vaccination strategy is one in which a substantial proportion of the population is vaccinated at random. The success of this measure depends on proportion (coverage), vaccine efficacy Vaccine efficacy is defined as the reduction in the incidence of a disease among people who have received a vaccine compared to the incidence in unvaccinated people. The efficacy of a new vaccine is measured in phase III clinical trials by giving one group of people a vaccine and , and disease transmissibility. The availability of a vaccine, therefore, does not guarantee prevention unless both delivery and vaccine-induced immunity are sufficient. For example, Figure 5 shows that a mildly contagious disease like SARS may be thwarted by partial coverage ([approximately equal to] 75%) with a moderately efficacious ef·fi·ca·cious  
adj.
Producing or capable of producing a desired effect. See Synonyms at effective.



[From Latin effic
 vaccine ([approximately equal to] 60% vaccine efficacy). Under this strategy, a moderately contagious disease can become epidemic unless a population receives 95% coverage with a 100% efficacious vaccine.

Ring vaccination of close contacts, on the other hand, is a very effective approach overall. This intervention, like quarantine, involves both transmission and contact reduction. Identifying the index patient results in a reduced infectious period. Subsequent identification and protection of his or her contacts through vaccination further limits the potential spread of the pathogen. Figure 5 considers the effect of ring vaccination on the population as a function of the effectiveness of patient isolation and the fraction of contacts that are successfully immunized. Partial protection of contacts may stein from inadequate contact tracing In epidemiology, contact tracing is the identification and diagnosis of persons who may have come into contact with an infected person. For sexually transmitted diseases, this is generally limited to sexual partners but for highly virulent diseases such as Ebola and tuberculosis, a  or an ineffective vaccine. For example, vaccinating 80% of close contacts with a 50% efficacious vaccine is equivalent to vaccinating 40% of close contacts with a 100% efficacious vaccine. Ring vaccination can be a successful strategy for a mildly contagious disease with even a moderate surveillance infrastructure or a partially efficacious vaccine. However, ring vaccination requires more successful case identification, contact tracing, and vaccination when implemented against a highly contagious disease. Ring vaccination is only applicable to diseases with relatively long incubation periods incubation period
n.
1. See latent period.

2. See incubative stage.


Incubation period 
 that allow contacts to be identified, vaccinated, and develop a protective immune response immune response
n.
An integrated bodily response to an antigen, especially one mediated by lymphocytes and involving recognition of antigens by specific antibodies or previously sensitized lymphocytes.
. Thus, this strategy is more appropriate for diseases like smallpox (incubation period 12 days) than SARS (incubation period 2-7 days).

Variation in Outbreak Size

The white entries in Figures 3-5 report the expected (average) size of small outbreaks for diseases below the epidemic threshold. Any particular outbreak, however, may not be exactly equal to this average size. In the left panel of Figure 7, we show the average and standard deviation In statistics, the average amount a number varies from the average number in a series of numbers.

(statistics) standard deviation - (SD) A measure of the range of values in a set of numbers.
 of outbreak sizes over the range of transmissibility values below the epidemic threshold. For each value of T, we estimate the standard deviation by using 1,000 simulated epidemics on the original urban network (without intervention). For low T, outbreaks tend to be small and close to the average outbreak size s. As T increases toward the epidemic threshold, the distribution of outbreak sizes widens substantially, and s becomes less informative. Given this variability, public health strategies should be based on bringing populations substantially under the epidemic threshold.

[FIGURE 7 OMITTED]

Sensitivity Analysis

Our mathematical predictions are based on a single simulated urban network with 2,000 households with an average of 2.6 people per household. To address the sensitivity of the predictions to the particular pattern of contacts in the network, we stochastically sto·chas·tic  
adj.
1. Of, relating to, or characterized by conjecture; conjectural.

2. Statistics
a. Involving or containing a random variable or variables: stochastic calculus.
 generated 100 urban networks of equal size and predicted the probability of an epidemic for the range of T above the epidemic threshold. Since each of these 100 networks has a unique degree distribution, the value of the epidemic threshold varies. In particular we find that the average epidemic threshold is 0.04822 with a 95% confidence interval confidence interval,
n a statistical device used to determine the range within which an acceptable datum would fall. Confidence intervals are usually expressed in percentages, typically 95% or 99%.
 of 0.04656 0.04988. Recall that the network used in the analysis above has an epidemic threshold [T.sub.c]=0.048. The right panel of Figure 7 shows the mean probability of an epidemic across these 100 networks with 95% confidence intervals. The probabilities for the particular network that we studied lie very close to the mean probabilities. The narrow confidence intervals suggest that our predictions are fairly robust to the particular architecture of the urban network. We further consider the effect of network size on these predictions in the online Appendix.

Discussion

Using contact network epidemiology, we evaluated various airborne infection control policies for a simulated urban setting like Vancouver. This approach explicitly captures the heterogeneous patterns of interpersonal contacts that lead to disease transmission and allows rapid mathematical prediction of the probability and distribution of an epidemic. This analysis does not depend on computationally intensive simulations. Furthermore, the approach allows one to quantitatively compare strategies that directly reduce the transmissibility of a pathogen or limit opportunities for a pathogen to spread. Although each strategy has been considered on its own, these methods can easily predict the effect of combined interventions for an entire spectrum of airborne infectious diseases, including SARS, smallpox, influenza, and meningococcal meningitis meningococcal meningitis
n.
An acute infectious disease affecting children and young adults characterized by inflammation of the meninges of the brain and spinal cord, headache, vomiting, convulsions, stiff neck, light sensitivity, and purpuric
, among others.

Although the qualitative results of this analysis are applied to urban settings, the work is meant to be a proof of concept rather than to provide specific quantitative recommendations for urban control of communicable diseases communicable diseases, illnesses caused by microorganisms and transmitted from an infected person or animal to another person or animal. Some diseases are passed on by direct or indirect contact with infected persons or with their excretions.  such as SARS and smallpox. Until we have developed contact network models for a wide range of communities and assessed their generality, contact network epidemiology will need to be applied on a case-by-case basis. For example, hospitals can use these methods to improve control of nosocomial nosocomial /noso·co·mi·al/ (nos?o-ko´me-il) pertaining to or originating in a hospital.

nos·o·co·mi·al
adj.
1. Of or relating to a hospital.

2.
 airborne infections. To start, each facility should model its particular network of patient-healthcare worker interactions, then calculate the effect of measures such as respiratory droplet droplet

very small drop of fluid.


droplet nuclei
the finite particles of matter which are transmitted from animal to animal.
 precautions, grouping patients in cohorts, modifications to healthcare worker assignments, and vaccination (12).

The success of contact network epidemiology depends not only on realistic models of contact patterns but also on reliable estimates of the average transmissibility of the pathogen, T. As a respiratory pathogen begins to spread through a population, epidemiologists can rapidly identify the mode and rate of disease transmission. These data can provide critical input for intervention strategies. Historically, the rate of disease transmission has been measured and reported in terms of the basic reproductive number [R.sub.0], based on the doubling time doubling time Oncology A parameter used to determine tumor aggressiveness, which serves to prognosticate, measure therapeutic success, and quantify tumor kinetics and growth rate. Cf Gompertzian growth curve.  of case counts in the early phase of an outbreak or epidemic. The value of [R.sub.0], however, may vary substantially, depending on the population in which it is measured. For example, recent estimates of [R.sub.0] for SARS ranged from 1.2 to 3.6 (34-36). In contrast, T is not subject to the particular patterns of interaction within a community and can be reliably estimated in diverse settings. Measuring T is only slightly more involved than measuring [R.sub.0]. For each case, one must measure not just the number of secondary cases, but also the total number of contacts of the case-patient during the infectious period and then divide the first value by the second.

Just as enormous molecular and technological resources are often mobilized to develop vaccines and diagnostic tools for emerging infectious diseases of public health importance, we should also harness the powerful quantitative mathematical tools that help assess disease interventions. When an airborne pathogen strikes, public health officials should be able to make scientifically grounded decisions about the competing medical, economic, and social implications following deployment of control measures. We illustrate that contact network epidemiology can provide detailed and valuable insight into the fate and control of an outbreak. Integrating these tools into public health decision making should facilitate more rational strategies to manage emerging diseases, bioterrorist events, and pandemic pandemic /pan·dem·ic/ (pan-dem´ik)
1. a widespread epidemic of a disease.

2. widely epidemic.


pan·dem·ic
adj.
Epidemic over a wide geographic area.

n.
 influenza in situations in which empiric data are not yet available to guide decision making.
Figure 3. Comparing the effect of face masks for the general public
and healthcare workers (HCWs). Mask efficiency is the percent
reduction in transmissibility to or from a person correctly using a
mask. Compliance is the fraction of the population adopting the
intervention. Results are for a mildly contagious disease with a
transmissibility T = 0.075 and a moderately contagious disease with a
transmissibility T = 0.245. The equivalent basic reproductive number
for these diseases are [R.sub.0] = 1.545 and [R.sub.0] = 5.047,
respectively. Without intervention, both of these diseases have T
above the epidemic threshold for the community ([T.sub.c] = 0.048) and
thus may ignite a large-scale epidemic. The probabilities that such
epidemics will occur (without intervention) are [S.sub.prob] = 0.50
and [S.sub.prob] = 0.97, respectively. Some interventions may not
bring T below the epidemic threshold and thus only reduce the
probability of an epidemic (gray boxes), while others succeed in
containing transmission to a small outbreak (white boxes). Gray boxes
give the probability of an epidemic, and white boxes give the expected
size of an outbreak. Outbreak size may not be an integer since s is an
average taken from all possible outbreaks in the community.

Mildly contagious disease

              Face masks, general public

                        Mask efficiency (%)

Compliance
   (%)          25         50         75         95

    30       0.38 (b)   0.35 (b)   0.25 (b)   0.14 (b)
    60       0.29 (b)   0.12 (b)   7.57 (a)   2.95 (a)
    90       0.18 (b)   7.16 (a)   2.06 (a)   1.28 (a)

             Face masks, HCWs

           Mask efficiency (%)

   25         50         75         95

0.31 (b)   0.27 (b)   0.22 (b)   0.18 (b)

Moderately contagious disease

              Face masks, general public

                        Mask efficiency (%)

Compliance
   (%)          25         50         75        95

    30       0.96 (b)   0.95 (b)   0.93 (b)   0.91 (b)
    60       0.95 (b)   0.91 (b)   0.85 (b)   0.73 (b)
    90       0.93 (b)   0.85 (b)   0.60 (b)   3.82 (a)

            Face masks, HCWs

          Masks efficiency (%)

   25         50         75         95

0.92 (b)   0.90 (b)   0.89 (b)   0.88 (b)

(a) Expected size of small outbreak (successful intervention)

(b) Probability of an epidemic (partial intervention)

Figure 4. Comparing the effect of isolation and quarantine.
Isolation alone reduces the infectious period by a specified
percentage. Quarantine involves both isolation and sequestering
a fraction of all case contacts. See the Figure 3 caption for
further details.

Mildly contagious disease

               Isolation

      Infectiousness reduction (%)

   25         50         75         95

0.22 (b)   4.73 (a)   1.66 (a)   1.09 (a)

                      Quarantine

                       Infectiousness
                        reduction (%)

Protected
contracts
      (%)      25         50         75         95

   30       5.24 (a)   2.19 (a)   1.37 (a)   1.06 (a)
   60       1.8 (a)    1.42 (a)   1.18 (a)   1.03 (a)
   90       1.09 (a)   1.06 (a)   1.03 (a)   1.01 (a)

Moderately contagious disease

                Isolation

       Infectiousness reduction (%)

   25         50         75         95

0.93 (b)   0.83 (b)   0.41 (b)   1.09 (a)

                      Quarantine

                         Infectiousness
                          reduction (%)

Protected
contracts
      (%)      25         50          75         95

   30       0.87 (b)   0.73 (b)   32.27 (a)   1.24 (a)
   60       0.69 (b)   0.48 (b)    2.13 (a)   1.12 (a)
   90       1.4 (a)    1.24 (a)    1.11 (a)   1.02 (a)

(a) Expected size of a small outbreak (successful intervention)

(b) Probability of an epidemic (partial intervention)

Figure 5. Comparing general vaccination and ring vaccination
strategies. General vaccination protects a percentage of persons
chosen randomly from the population with an efficacy determined
by the vaccine itself. Ring vaccination involves isolating the
patient (and the associated reduction in the infectious period)
followed by targeted vaccination of contacts. The degree to which
contacts are successfully protected depends on the success of
contact tracing and the efficacy of the vaccine. See the Figure
3 caption for further details.

Mildly contagious disease

                     General vaccination

                             Coverage (%)

Vaccine
efficacy (%)      25         50         75         95

     30        0.43 (b)   0.38 (b)   0.32 (b)   0.27 (b)
     60        0.38 (b)   0.26 (b)   7.69 (a)   2.87 (a)
    100        0.30 (b)   4.31 (a)   1.57 (a)   1.15 (a)

                    Ring vaccination

                   Infectiousness reduction
                            (%)

Protected
 contacts
   (%)         25         50         75         95

     40     3.19 (a)   1.85 (a)   1.3 (a)    1.05 (a)
     60     1.79 (a)   1.42 (a)   1.17 (a)   1.03 (a)
     80     1.26 (a)   1.15 (a)   1.07 (a)   1.01 (a)

Moderately contagious disease

                 General vaccination

                        Coverage (%)

Vaccine
efficacy (%)      25         50         75         95

     30        0.89 (b)   0.81 (b)   0.72 (b)   0.65 (b)
     60        0.81 (b)   0.64 (b)   0.49 (b)   0.35 (b)
    100        0.69 (b)   0.43 (b)   0.16 (b)   1.6 (a)

                      Ring vaccination

               Infectiousness reduction
               (%)

Protected
 contacts
   (%)         25         50         75         95

     40     0.79 (b)   0.55 (b)   5.62 (a)   1.2 (a)
     60     0.66 (b)   0.42 (b)   2.12 (a)   1.12 (a)
     80     3.34 (a)   1.92 (a)   1.32 (a)   1.05 (a)

(a) Expected size of a small outbreak (successful intervention)

(b) Probability of an epidemic (partial intervention)

Figure 6. Intervention projections in terms of [R.sub.eff]. This
figure presents the results in the lower panel of Figure 4
expressed in terms of effective reproductive number rather than
the projected size of an outbreak. If [R.sub.eff] < 1 outbreaks
will die out, while if [R.sub.eff] > 1, epidemics may ensue.
Note that the shading indicates epidemic potential and coincides
perfectly with the shading in Figure 4.

Mildly contagious disease

                        Quarantine

                        Infectiousness
                         reduction (%)

Protected      25         50         75         95
contacts
(%)

   30       0.81 (a)   0.54 (a)   0.27 (a)   0.05 (a)
   60       0.44 (a)   0.3 (a)    0.15 (a)   0.03 (a)
   90       0.08 (a)   0.06 (a)   0.03 (a)   0.01 (a)

Moderately contagious disease

                        Quarantine

                        Infectiousness
                         reduction (%)

Protected      25         50         75         95
contacts
(%)

   30       2.7 (b)    1.86 (b)   0.96 (a)   0.2 (a)
   60       1.49 (b)   1.03 (b)   0.53 (a)   0.11 (a)
   90       0.29 (a)   0.2 (a)    0.1 (a)    0.02 (a)

(a) [R.sub.eff] < 1

(b) [R.sub.eff] > 1


Acknowledgments

We thank Mark Newman for technical guidance.

This work was supported in part by grants from the Canadian Institutes of Health Research Canadian Institutes of Health Research (CIHR) is the major federal agency responsible for funding health research in Canada. It is the successor to the Medical Research Council of Canada.  (CIHR CIHR Canadian Institutes of Health Research
CIHR Cambodian Institute of Human Rights
) (FRN FRN

See: Floating-rate note
: 67803) to the British Columbia SARS Investigators Collaborative that includes B.P., L.A.M., D.M.S., M.K., D.M.P. and R.C.B. and from the National Science Foundation (DEB-0303636) to L.A.M. The Santa Fe Institute The Santa Fe Institute (SFI) is a non-profit research institute dedicated to the study of complex systems in Santa Fe, New Mexico. Overview
The Santa Fe Institute was founded in 1984 by George Cowan, David Pines, Stirling Colgate, Murray Gell-Mann, Nick Metropolis, Herb
 and CIHR supported the working visits of B.P. and L.A.M.

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Babak Pourbohloul, * (1) Lauren Ancel Meyers, ([dagger]) ([double dagger double dagger
n.
A reference mark () used in printing and writing. Also called diesis.

Noun 1.
]) (1) Danuta M. Skowronski, * Mel Krajden Mel Krajden is a physician, research microbiologist and public health administrator in Vancouver, Canada. He is most well-known for appearances in the media regarding health-related news. , * David M. Patrick, * and Robert C. Brunham *

* University of British Columbia Centre for Disease Control, Vancouver, British Columbia, Canada; ([dagger]) University of Texas at Austin “University of Texas” redirects here. For other system schools, see University of Texas System.
The University of Texas at Austin (often referred to as The University of Texas, UT Austin, UT, or Texas
, Austin, Texas, USA; and ([double dagger]) Santa Fe Institute, Santa Fe, New Mexico Santa Fe, more properly Santa Fé, (pronounced [ˈsænə feɪ] by natives, [ˌsænə ˈfeɪ] , USA

(1) These authors contributed equally to this work.

(2) For the purposes of this manuscript, "airborne" refers to respiratory pathogens that are spread through respiratory secretions and can be either airborne, such as tuberculosis, or dropletborne, such as SARS.

Dr. Pourbohloul is the director of the Division of Mathematical Modeling at the University of British Columbia Centre for Disease Control. He is leading a research group, funded by the CIHR, in the application of network theory to the prediction and control of SARS and other respiratory infections.

Address for correspondence: Babak Pourbohloul, Division of Mathematical Modeling, University of British Columbia Centre for Disease Control, 655 West 12th Ave, Vancouver, British Columbia, V5Z 4R4 Canada; fax: 604-660-6066; email: babak.pourbohloul@bccdc.ca
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