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Maternal genistein alters coat color and protects [A.sup.vy] mouse offspring from obesity by modifying the fetal epigenome.


Genistein, the major phytoestrogen phytoestrogen /phy·to·es·tro·gen/ (-es´tro-jen) any of a group of weakly estrogenic, nonsteroidal compounds widely occurring in plants.

phy·to·es·tro·gen
n.
 in soy, is linked to diminished female reproductive performance and to cancer chemoprevention che·mo·pre·ven·tion
n.
The use of chemical agents, drugs, or food supplements to prevent disease.


chemoprevention 
 and decreased adipose adipose /ad·i·pose/ (ad´i-pos)
1. fatty.

2. the fat present in the cells of adipose tissue.


ad·i·pose
adj.
Of, relating to, or composed of animal fat; fatty.
 deposition. Dietary genistein may also play a role in the decreased incidence of cancer in Asians compared with Westerners, as well as increased cancer incidence in Asians immigrating to the United States. Here, we report that maternal dietary genistein supplementation of mice during gestation, at levels comparable with humans consuming high-soy diets, shifted the coat color of heterozygous het·er·o·zy·gous
adj.
1. Having different alleles at one or more corresponding chromosomal loci.

2. Of or relating to a heterozygote.
 viable yellow agouti agouti (əg`tē), name applied to rabbit-sized rodents of the genus Dasyprocta, found in Central and South America and in the West Indies.  ([A.sup.vy]/a) offspring toward pseudoagouti. This marked phenotypic change was significantly associated with increased methylation methylation,
n a phase-II detoxification pathway in the liver; methyl groups combine with toxins to rid the body of various substances.

methylation
(meth´
 of six cytosine-guanine sites in a retrotransposon retrotransposon, retroposon

a mobile sequence of DNA that transposes via a RNA intermediate.
 upstream of the transcription start site of the Agouti gene. The extent of this DNA methylation was similar in endodermal endodermal

pertaining to or emanating from endoderm.


endodermal sinus tumor
see yolk sac tumor.
, mesodermal mes·o·derm  
n.
The middle embryonic germ layer, lying between the ectoderm and the endoderm, from which connective tissue, muscle, bone, and the urogenital and circulatory systems develop.
, and ectodermal ec·to·derm  
n.
1. The outermost of the three primary germ layers of an embryo, from which the epidermis, nervous tissue, and, in vertebrates, sense organs develop.

2. The outer layer of a diploblastic animal, such as a jellyfish.
 tissues, indicating that genistein acts during early embryonic development. Moreover, this genistein-induced hypermethylation persisted into adulthood, decreasing ectopic ectopic /ec·top·ic/ (ek-top´ik)
1. pertaining to ectopia.

2. located away from normal position.

3. arising from an abnormal site or tissue.


ec·top·ic
adj.
 Agouti expression and protecting offspring from obesity. Thus, we provide the first evidence that in utero dietary genistein affects gene expression and alters susceptibility to obesity in adulthood by permanently altering the epigenome. Key words: developmental origins of adult disease, DNA methylation, epigenetics, viable yellow agouti ([A.sup.vy]) mouse. doi:10.1289/ehp.8700 available via http://dx.doi.org/ [Online 26 January 2006]

**********

Developmental plasticity occurs when environmental influences affect cellular pathways during gestation, enabling a single genotype to produce a broad range of adult phenotypes (Bateson et al. 2004). Specifically, the developmental origins hypothesis postulates that nutrition and other environmental factors during prenatal and early postnatal development influence developmental plasticity and alter susceptibility to adult cardiovascular disease, type 2 diabetes type 2 diabetes
n.
See diabetes mellitus.
, and obesity (Barker 1997, 2004). Moreover, persistent epigenetic epigenetic /epi·ge·net·ic/ (-je-net´ik)
1. pertaining to epigenesis.

2. altering the activity of genes without changing their structure.
 adaptations that occur early in development in response to maternal nutrition and the environment are associated with increased susceptibility to cancer and other adult-onset chronic diseases (Cooney et al. 2002; Li et al. 2003; Waterland and Jirtle 2004).

Methylation of cytosines in cytosine--guanine (CpG) dinucleotides represents a critical epigenetic DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 modification affecting gene expression and cellular function (Bird 2002). Transposable transposable /trans·pos·a·ble/ (trans-poz´ah-b'l) capable of being interchanged or put in a different place or order.  elements, the promoter regions of housekeeping genes, and cis-acting regulatory elements of imprinted genes are three key epigenetic susceptibility targets containing CpG sites that are normally methylated meth·yl·ate  
n.
An organic compound in which the hydrogen of the hydroxyl group of methyl alcohol is replaced by a metal.

tr.v. meth·yl·at·ed, meth·yl·at·ing, meth·yl·ates
1.
, unmethylated, and differentially methylated, respectively. Therefore, environmental factors that affect DNA methylation patterning during development can potentially influence adult phenotype via alterations in CpG methylation at epigenetically labile labile /la·bile/ (la´bil)
1. gliding; moving from point to point over the surface; unstable; fluctuating.

2. chemically unstable.


la·bile
adj.
1.
 regions in the genome.

The epigenome is likely to be most vulnerable to environmental factors during embryogenesis Embryogenesis

The formation of an embryo from a fertilized ovum, or zygote. Development begins when the zygote, originating from the fusion of male and female gametes, enters a period of cellular proliferation, or cleavage.
 because the DNA synthetic rate is high, and the elaborate DNA methylation patterning required for normal tissue development is established during this period. Therefore, when evaluating the effects of environmental influences on the epigenome, not only the dose but also the developmental timing must be considered. For example, dietary methyl donor intake in adulthood is not associated with risk of breast cancer among African-American women (Zhu et al. 2003). Nevertheless, it remains possible that epigenetic modifications caused by the nutritional environment of the embryo, fetus, and neonate neonate /neo·nate/ (ne´o-nat) newborn infant.

ne·o·nate
n.
A neonatal infant.



neonate

a newborn animal.
 are involved in the etiology of this adult disease.

Isoflavones isoflavones (īˑ·sō·flāˈ·vōnz),
n.pl phytoestrogenic compounds found in various plants, including red clover and soy.
 represent a class of phytoestrogens Phytoestrogens
Compounds found in plants that can mimic the effects of estrogen in the body.

Mentioned in: Premenstrual Syndrome

phytoestrogens,
n.pl plant-derived estrogen analogs.
 present in soy and soy products that are active in multiple biologic systems, including estrogen-receptor--and non-estrogen-receptor-mediated signaling pathways (Lamartiniere et al. 2002; Valachovicova et al. 2004). Genistein, the major isoflavone i·so·fla·vone
n.
A flavonoid found in soy.



isoflavone

3-phenyl-4H-1-benzopyran-4-one; many of the naturally occurring estrogenic substances in pasture plants are isoflavones.
 in soy, exhibits mixed estrogen agonist and antagonist properties (Price and Fenwick 1985), inhibits tyrosine kinase (Akiyama et al. 1987), and scavenges free radicals (Wei et al. 1993), depending on timing, dose, and the tissue examined. A diet rich in soy, such as a typical Asian or Western vegetarian diet, contains as much as 1.4 mg genistein/kg body weight per day (Coward et al. 1993), whereas infants fed soy formula consume almost five times as much genistein (Setchell et al. 1997). Genistein is linked to reduced female reproductive health (Nagaos et al. 2001) but also to breast and prostate cancer chemoprevention (Lamartiniere et al. 2002) and decreased adipose deposition (Naaz et al. 2003). Thus, dietary genistein may help explain the difference in cancer incidence between Westerners and Asian populations with high soy intake (Lee et al. 1991; Peeters et al. 2003; Ziegler et al. 1993).

Despite a growing body of toxicologic and mechanistic literature on the effects of genistein and other phytoestrogens, the long-term health consequences of developmental and early exposure remain largely unknown (Badger et al. 2002). Limited evidence suggests that exposure to phytoestrogens postnatally alters the epigenome (Day et al. 2002; Lyn-Cook et al. 1995). Neonatal exposure to high doses of the phytoestrogens equol and coumestrol is correlated with hypermethylation of a protooncogene in the rat pancreas (Lyn-Cook et al. 1995). More recently, a study employing methylation arrays suggests that adult dietary genistein induces gene hypermethylation in the prostate gland (Day et al. 2002). Interestingly, the effect of genistein exposure during gestation on DNA methylation in the offspring has not been investigated even though this is when the epigenome is most susceptible to environmentally induced dysregulation.

To determine if maternal genistein affects offspring by altering the epigenome in utero, we assessed coat color, DNA methylation, and body weight in genetically identical heterozygous viable yellow agouti ([A.sup.vy]/a) offspring. The results show that genistein-induced CpG hypermethylation of six CpG sites in the [A.sup.vy] intracisternal A particle (IAP (Internet Access Provider) See ISP.

IAP - Internet Access Provider
) retrotransposon shifted stochastic coat-color distribution toward pseudoagouti, thereby decreasing the incidence of adult-onset obesity in [A.sup.vy]/ offspring. This is the first evidence that early in utero exposure to genistein results in decreased adult chronic disease susceptibility by producing permanent alterations in the epigenome.

Materials and Methods

Animals and diets. [A.sup.vy] mice were obtained from Oak Ridge National Laboratory Oak Ridge National Laboratory (ORNL) is a multiprogram science and technology national laboratory managed for the United States Department of Energy by UT-Battelle, LLC. ORNL is located in Oak Ridge, Tennessee, near Knoxville.  (Oak Ridge, TN) from a colony that has been maintained with sibling mating and forced heterozygosity heterozygosity /het·ero·zy·gos·i·ty/ (het?er-o-zi-gos´i-te) the state of possessing different alleles at a given locus in regard to a given character.heterozy´gous

het·er·o·zy·gos·i·ty
n.
 for the [A.sup.vy] allele for more than 200 generations, resulting in a genetically invariant background (Waterland and Jirtle 2003). The [A.sup.vy] allele is passed through the paternal lineage to avoid bias associated with maternal transmission where methylation of the maternal allele is not completely reset (Rakyan et al. 2001).

Virgin a/a females, 8-10 weeks of age, were assigned to receive either phytoestrogen-free modified AIN-93G diet (diet 95092 with 7% corn oil substituted for 7% soybean oil; Harlan Teklad, Madison, WI) or modified AIN-93G diet supplemented with 250 mg/kg diet of genistein (diet 00417, Harlan Teklad). This level of genistein in the diet results in the animals being exposed to concentrations comparable with those received by humans consuming high-soy diets (Fritz et al. 2002). Harland Teklad supplied all diet ingredients except genistein (Indofine Chemical Company, Hillsborough, NJ). Diets were provided 2 weeks before mating females with [A.sup.vy]/a males and throughout pregnancy and lactation. At postnatal day 21, all offspring were weaned to stock maintenance diet (diet 5021; LabDiet, Richmond, IN). [A.sup.vy]/a offspring were weighed, digitally photographed, and rated for coat-color phenotype.

For [A.sup.vy]a offspring, total DNA was isolated from day 21 tail clips, day 150 tail, day 150 liver, day 150 brain, and day 150 kidney using buffer ATL (Active Template Library) A set of software routines from Microsoft that provide the basic framework for creating ActiveX and COM objects. Stemming from the standard template library (STL) that comes with C++ compilers, ATL includes an object wizard that sets up , proteinase proteinase /pro·tein·ase/ (pro´ten-as?) endopeptidase.

pro·tein·ase
n.
A protease that begins the hydrolytic breakdown of proteins usually by splitting them into polypeptide chains.
 K, and Rnase A (Qiagen Inc., Valencia, CA) followed by phenol-chloroform extraction and ethanol precipitation. Animals used in this study were maintained in accordance with the Guidelines for the Care and Use of Laboratory Animals (Institute of Laboratory Animal Resources 1996) and were treated humanely and with regard for alleviation of suffering. The study protocol was approved by the Duke University Institutional Animal Care and Use Committee Institutional Animal Care and Use Committees are of central importance to the application of laws to animal research in the United States. Most research involving laboratory animals is funded by the United States National Institutes of Health or other federal agencies. .

Coat-color phenotype classification and body weight measurement. A single, blinded observer visually classified day 21 [A.sup.vy]/a offspring coat-color phenotype into one of five categories based on proportion of brown to yellow in the fur This article may contain original research or unverified claims.

Please help Wikipedia by adding references. See the for details.
This article has been tagged since February 2007.

In the Fur is a Pop/Alternative Indie Rock band from the Philadelphia area.
: yellow (< 5% brown), slightly mottled (between 5% and 50% brown), mottled (~ 50% brown), heavily mottled (between 50% and 95% brown), and pseudoagouti (> 95% brown). [A.sup.vy]/a offspring were weighed on a calibrated digital scale every 5 weeks from week 25 to week 60. Twenty-two animals were sacrificed for tissues or died before week 60 and were not included in the body weight analysis.

Methylation assay. Sodium bisulfite modification of DNA was performed using a protocol adapted from Gruanau et al. (2001) as previously described (Waterland and Jirtle 2003). Regions of interest were amplified from bisulfite-modulated DNA in 50-[micro]L polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  (PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
) using 1.5 U Platinum Taq DNA polymerase (Invitrogen, Carlsbad, CA), 15 pmol primers, 1.5 mM Mg[Cl.sub.2], and 10 mM dinucleotide dinucleotide /di·nu·cleo·tide/ (di-nldbomack´le-o-tid?) one of the cleavage products into which a polynucleotide may be split, itself composed of two mononucleotides.

di·nu·cle·o·tide
n.
 triphosphates (94 [degrees] C, 2 min; 94 [degrees] C x 30 sec, 55 [degrees] C x 30 sec, and 72 [degrees] C x 60 sec for 40 cycles; 72 [degrees] C, 9 min). We used forward primer IAPF IAPF Inter-American Peace Force
IAPF International Association of Peace Foundations
3 (5' ATT ATT

ammonia tolerance test.
 TTT AGG AAA AAA: see American Automobile Association.


(Triple A) A common single-cell battery used in a myriad of electronic devices of all variety. Like its double A (AA) cousin, it provides 1.5 volts of DC power. When used in series, the voltage is multiplied.
 AGA GAG TAA TAA - Track Average Amplitude  GAA GTA AG 3) and reverse primer IAPR IAPR International Association on Pattern Recognition
IAPR International Association of Pallet Recyclers
IAPR International Association of Permanent Representatives (to the UN) 
4 (5' TAA TTC CTA An abbreviation for cum testamento annexo, Latin for "with the will annexed."  AAA ATT TCA TCA

1. trichloroacetic acid.

2. tricarboxylic acid cycle (Krebs cycle).

TCA Tricyclic antidepressant, see there
 ACT AAT Alpha-1-antitrypsin (AAT)
A blood component that breaks down infection-fighting enzymes such as elastase.

Mentioned in: Chronic Obstructive Lung Disease
 AAC TCC 3') from Waterland and Jirtle (2003).

PCR products were resolved by electrophoresis on a 1.5% agarose gel, excised, gel extracted (GenElute; Sigma Chemical Co., St. Louis, MO), and sequenced manually (Thermo Sequenase Radiolabeled Terminator Cycle Sequencing kit; USB USB
 in full Universal Serial Bus

Type of serial bus that allows peripheral devices (disks, modems, printers, digitizers, data gloves, etc.) to be easily connected to a computer.
 Corporation, Cleveland, OH) according to manufacturer's instructions (95 [degrees] C x 30 sec, 55 [degrees] C x 30 sec, and 72 [degrees] C x 60 sec for 35 cycles) using forward sequencing primer IAPF5 (5' ATT ATT TTT TGA TTG TTG TAG TTT ATG ATG antithymocyte globulin.
lymphocyte immune globulin (antithymocyte globulin equine, ATG, ATG equine, LIG)

Atgam

Pharmacologic class: Immunoglobulin

Therapeutic class: Immunosuppressant
 G 3'). Sequencing products were resolved using polyacrylamide gel electrophoresis polyacrylamide gel electrophoresis
n.
A technique for determining the molecular weight of proteins, in which proteins that have been coated in an anionic detergent undergo electrophoresis in a polyacrylamide gel.
. Blank lanes were placed between C and T lanes to prevent signal overlap. Percentage of cells methylated at the nine CpG sites in the [A.sup.vy] IAP region was quantified by phosphor imaging (percentage of cells methylated = [100 x (C intensity)/(C intensity + T intensity)]. The nine CpG sites studied are located at nucleotide positions 206, 214, 220, 244, 265, 306, 319, 322, and 334 of GenBank accession number AF540972 (GenBank 2005).

HPLC HPLC high-performance liquid chromatography.

HPLC

high performance liquid chromatography.

HPLC High-performance liquid chromatography Lab instrumentation A highly sensitive analytic method in which analytes are placed
 determination of SAM and SAH Subarachnoid hemorrhage (SAH)
Loss of blood into the subarachnoid space, the fluid-filled area that surrounds the brain tissue.

Mentioned in: Cerebral Aneurysm
. Hepatic concentrations of S-adenosylmethionine (SAM) and S-adenosylhomocysteine (SAH) were measured using the high-performance liquid chromatography (HPLC) method of Herbig et al. (2002). Approximately 50 mg of liver was weighed and homogenized in 500 [micro]L 0.1 M sodium acetate (pH 5.5), and cellular proteins were precipitated by addition of 312 [micro]L 10% perchloric acid. After centrifugation (2,000 x g, 10 min, 4 [degrees] C), each supernatant was transferred to a clean tube, neutralized by addition of 140 [micro]L 1 M sodium phosphate (pH 11.5), and diluted with 1 mL deionized de·i·on·ize  
tr.v. de·i·on·ized, de·i·on·iz·ing, de·i·on·iz·es
To remove ions from (a solution) using an ion-exchange process.



de·i
 [H.sub.2]O. Each sample was then applied to a C18 Sep-Pak cartridge (Waters Corp., Milford, MA) primed with 5 mM 1-heptane-sulfonic acid (Alfa Aesar, Ward Hill, MA) in methanol. The cartridges were then washed with 5 mL deionized [H.sub.2]O before SAM and SAH were eluted in 2 mL methanol. Fifty microliters of 3 M NaAcO was added to each eluate eluate /el·u·ate/ (el´u-at) the substance separated out by, or the product of, elution or elutriation.

el·u·ate
n.
The solution of solvent and dissolved matter resulting from elution.
 before drying under vacuum at ambient temperature overnight. SAM and SAH were resuspended in 250 [micro]L [H.sub.2]O and converted to their fluorescent derivatives by the addition of 50 [micro]L chloroacetylaldehyde (50% by weight; Sigma-Aldrich, Milwaukee, WI) and incubation at 60 [degrees] C for 1 hr. Purified SAM (New England Biolabs New England Biolabs (NEB) produces and supplies reagents for the life science industry. NEB offers a large selection of recombinant and native enzymes for genomic research. It also offers products in the areas related to proteomics and drug discovery. , Beverly, MA) and SAH (Sigma-Aldrich) were quantitated spectrophotometrically and used to generate standard curves. The standards were prepared using the same complete protocol as described for the tissue extracts. Samples and standards were loaded onto a C8 column (5 [micro]m, 250 x 4.6 mm; Phenomenex, Torrance, CA), and solvent delivery was performed by two Shimadzu (Columbia, MD) LC-10ADVP pumps controlled by a SCL-10AVP AVP

arginine vasopressin.
 system controller. A two-buffer system was used to separate SAM and SAH, as described by Herbig et al. (2002). SAM and SAH were detected with a Shimadzu RF-10AXL spectrofluorometric detector ([[delta].sub.ex] = 270 nm and [[lambda].sub.em] = 410 nm).

Statistical analysis. Diet group comparisons of the proportion of offspring in each of the five coat-color classes were performed by chi-square analysis. Average IAP CpG methylation and site-specific CpG methylation between the unsupplemented and genistein-supplemented groups were analyzed by two-tailed two-sample hypothesis testing of means with STATA software (version 8.0; StataCorp., College Station, TX). Relationships among genistein supplementation, [A.sup.vy] IAP methylation, and coat color were analyzed by mediational regression analysis (Baron and Kenny 1986). Pearson's correlation coefficients and p-values of tissue type and age were calculated with STATA software. Body weight across coat-color phenotype was assessed by Bonferroni-corrected analysis of variance (ANOVA anova

see analysis of variance.

ANOVA Analysis of variance, see there
). Diet group comparisons of the body weight were performed by chi-square analysis.

Results

DNA methylation and the [A.sup.vy] model. The murine Agouti gene encodes a paracrine paracrine /para·crine/ (par´ah-krin)
1. denoting a type of hormone function in which hormone synthesized in and released from endocrine cells binds to its receptor in nearby cells and affects their function.

2.
 signaling molecule that promotes follicular fol·lic·u·lar
adj.
1. Relating to, having, or resembling a follicle or follicles.

2. Affecting or growing out of a follicle or follicles.
 melanocytes Melanocytes
Skin cells derived from the neural crest that produce the protein pigment melanin.

Mentioned in: Malignant Melanoma, Skin Pigmentation Disorders

melanocytes
 to produce yellow phaeomelanin pigment instead of black eumelanin pigment. Transcription is normally initiated from a hair-cycle-specific promoter in exon 2 of the agouti (A) allele (Figure 1A). Transcription of the A allele normally occurs only in the skin where transient A expression in hair follicles Hair follicles
Tiny organs in the skin, each one of which grows a single hair.

Mentioned in: Alopecia
 during a specific stage of hair growth results in a subapical sub·ap·i·cal
adj.
Located below the apex of a part.



sub·api·cal·ly adv.
 yellow band on each black hair, causing the brown (agouti) coat color of wild-type mice (Duhl et al. 1994).

[FIGURE 1 OMITTED]

The [A.sup.vy] allele resulted from the insertion of an IAP murine retrotransposon upstream of the transcription start site of the Agauti gene (Figure 1A) (Duhl et al. 1994; Waterland and Jirtle 2003). A cryptic promoter in the proximal end of the [A.sup.vy] IAP promotes constitutive ectopic Agouti transcription, leading to yellow fur, obesity, and tumorigenesis tumorigenesis /tu·mor·i·gen·e·sis/ (-jen´e-sis) oncogenesis.

tu·mor·i·gen·e·sis
n.
Formation or production of tumors.
 (Miltenberger et al. 1997; Morgan et al. 1999). CpG methylation in the [A.sup.vy] IAP correlates inversely with ectopic Agouti expression. The degree of methylation and corresponding level of ectopic Agouti expression vary stochastically among individual isogenic isogenic /iso·gen·ic/ (-jen´ik) syngeneic.
isogenic (ī´sōjen´ik),
adj originating from a common source; possessing the same genetic composition.
 [A.sup.vy]/a mice, causing a wide variation in coat color ranging from yellow (unmethylated) to pseudoagouti (methylated) (Morgan et al. 1999) (Figure 1B,C). Increased body weight is also positively correlated to ectopic agouti expression, as seen in the week 15 isogenic [A.sup.vy]/a littermates shown in Figure 1C.

Offspring characteristics and coat-color distribution. The total number of offspring studied was from 15 unsupplemented litters (52 [A.sup.vy]/a offspring) and 12 genistein-supplemented litters (44 [A.sup.vy]/a offspring). Maternal genistein did not significantly influence litter size, wean weight, percent survival, or sex ratio (data not shown). Maternal genistein supplementation shifted the coat-color distribution of genetically identical day 21 [A.sup.vy]/a offspring toward the pseudoagouti phenotype (chi-square, p = 0.0005) (Figure 2A). Fifty percent of genistein-supplemented offspring were classified as pseudoagouti or heavily mottled, compared with 23% of unsupplemented offspring. Furthermore, only 7% of genistein-supplemented offspring were categorized at yellow, compared with > 21% of the unsupplemented offspring.

[FIGURE 2 OMITTED]

Genistein supplementation and DNA methylation. Bisulfite sequencing methylation analysis (Grunau et al. 2001) of CpG sites in the cryptic promoter region of the [A.sup.vy] IAP (Figure 1A, 1B, Figure 2B) showed a statistically increased average percentage of cells methylated in genistein-supplemented offspring (n = 44) relative to that in unsupplemented offspring (n = 52) (two-tailed t-test, p = 0.025). Analysis of site-specific methylation at nine individual CpG sites revealed significantly different methylation between the unsupplemented and genistein-supplemented diet groups at sites 4-9 (two-tailed t-test, p = 0.004, 0.02, 0.04, 0.03, 0.05, and 0.02, respectively; Figure 2B,C). Moreover, the statistical significance of site 4 is an order of magnitude A change in quantity or volume as measured by the decimal point. For example, from tens to hundreds is one order of magnitude. Tens to thousands is two orders of magnitude; tens to millions is three orders of magnitude, etc.  greater than that for sites 5-9.

The relationship between genistein diet, IAP methylation, and coat color was further assessed by mediational regression analysis (Baron and Kenny 1986) (Figure 3). Genistein diet significantly influences brown coat color (Figure 3A, top), but this relationship was attenuated Attenuated
Alive but weakened; an attenuated microorganism can no longer produce disease.

Mentioned in: Tuberculin Skin Test


attenuated

having undergone a process of attenuation.
 when regional [A.sup.vy] CpG methylation of sites 4-9 was included in the model (Figure 3A, bottom). Interestingly, the effect of methylation on coat color was most pronounced when individual site 4 methylation status was specified (Figure 3B), suggesting that site 4 methylation principally mediates the effect of genistein supplementation on [A.sup.vy]/a coat color.

[FIGURE 3 OMITTED]

Average methylation in day 21 tail tissues from a subset of genistein-supplemented animals (n = 5) was highly correlated with average methylation in day 150 tissues derived from the ectoderm ectoderm, layer of cells that covers the surface of an animal embryo after the process of gastrulation has occurred. This outer layer, together with the endoderm, or inner layer, is present in all early embryos.  (brain and tail), mesoderm mesoderm, in biology, middle layer of tissue formed in the gastrula stage of the developing embryo. At the end of the blastula stage, cells of the embryo are arranged in the form of a hollow ball.  (kidney), and endoderm endoderm (ĕn`dədûrm'), in biology, inner layer of tissue formed in the gastrula stage of the developing embryo. At the end of the blastula stage, cells of the embryo are arranged in the form of a hollow ball.  (liver) (Figure 4). Similar results were obtained for individual sites 1-9 (data not shown).

[FIGURE 4 OMITTED]

Adult body weight analysis. Because CpG methylation in the [A.sup.vy] IAP is inversely correlated to ectopic Agouti expression and obesity incidence (Morgan et al. 1999), we determined whether the genistein-induced population shift in coat color also affected body weight distribution in adulthood. First, body weight analysis of all offspring across coat-color classes demonstrated significant differences starting at week 25 and continuing through week 60 (Figure 5). Within coat-color classes, mean week-60 body weights were 54.7 [+ or -] 2.8 g for yellow animals (n = 9), 59.5 [+ or -] 1.7 g for slightly mottled animals (n = 24), 56.5 [+ or -] 1.9 g for mottled animals (n = 15), 54.0 [+ or -] 2.0 g for heavily mottled animals (n = 14), and 35.6 [+ or -] 1.2 g for pseudoagouti animals (n = 12). ANOVA with Bonferroni correction demonstrated that week-60 mean pseudoagouti body weight is significantly reduced when compared with each of the four other coat-color classes (p = 0.0001). Significant body weight differences were not observed between the other four coat-color classes.

[FIGURE 5 OMITTED]

Second, a higher proportion of genistein-supplemented offspring are classified as pseudoagouti (Figure 2A). Hence, when compared with unsupplemented offspring, genistein-supplemented [A.sup.vy]/a offspring at 60 weeks of age were more likely to be of normal weight (< 38 g) and less likely to be obese (> 58 g) (chi-square, p = 0.007). Approximately 23% of genistein-supplemented offspring were characterized as normal adult weight, compared with only 10% of unsupplemented offspring. Body weight differences between male and female animals were not observed among all offspring, within diet groups, or within coat-color classes, consistent with sex not being an effect modifier of the relationship between body weight and diet or coat color. When analysis was restricted to animals within the same coat-color class, genistein supplementation was never significantly associated with body weight, indicating that prenatal genistein did not affect body weight via exposure side effects. Thus, the increased methylation resulting from genistein exposure is principally responsible for the population decrease in obesity among genistein offspring.

SAM and SAH levels. We demonstrated previously that periconceptional supplementation of [A.sup.vy]/a mice with nutrients important to one-carbon metabolism, including folic acid, vitamin [B.sub.12], choline choline: see vitamin.
choline

Organic compound related to vitamins in its activity. It is important in metabolism as a component of the lipids that make up cell membranes and of acetylcholine.
, and betaine betaine /be·ta·ine/ (be´tah-en) the carboxylic acid derived by oxidation of choline; it acts as a transmethylating metabolic intermediate and is used in the treatment of homocystinuria. , permanently increases offspring average methylation of seven CpG sites in pseudoexon 1A immediately downstream of the [A.sup.vy] IAP (Waterland and Jirtle 2003). The provision of excess methyl donors and cofactors increases the availability of methyl groups for DNA methylation, as shown in Figure 6. Although genistein is not a methyl donor, the DNA hypermethylation observed in this study could still stem from enhanced efficiency of one or more steps in the one-carbon metabolism pathway. To evaluate this possibility, hepatic concentrations of SAM and SAH were measured in a/a females that were fed either the unsupplemented or genistein-supplemented diet for 3 weeks. No effect of dietary genistein on SAM or SAH was detected (data not shown).

[FIGURE 6 OMITTED]

Discussion

In the present study, we observed a statistically significant shift in coat-color phenotype and adult body weight distribution among genetically identical offspring whose mothers received a diet supplemented with 250 mg/kg diet of genistein. The shifts in coat color and body weight were mediated by increased methylation at CpG sites 4-6 located immediately upstream of the cryptic promoter region of the [A.sup.vy] IAP upstream of the transcription start site of the Agouti gene. Hypermethylation in the genistein-supplemented population results in decreased ectopic Agouti expression, which reduces yellow phaeomelanin production and protects against adult-onset obesity.

In addition to assessing average methylation over the [A.sup.vy] retrotransposon region, we also determined individual methylation levels at each of the nine CpG sites. The enhanced significance of site 4 coupled with the general increase in methylation closer to the cryptic [A.sup.vy] promoter suggests that site 4 represents a boundary to methylation spreading and may be particularly important in determining the epigenetically regulated mosaicism in [A.sup.vy] mouse coat color. Our data indicate that site 4 methylation principally mediates the effect of genistein supplementation on [A.sup.vy]/a coat color. This finding is consistent with methylation status of a single CpG in the glucocorticoid receptor gene promoter principally mediating the effect of maternal caregiving behavior on long-term stress responsiveness in rats (Weaver et al. 2004).

The low variability in CpG methylation among the three germ layer tissues relative to high variability between individual animals indicates that the establishment of epigenotype at the [A.sup.vy] IAP, which genistein is influencing, occurs early in embryonic development. Furthermore, the concordance between [A.sup.vy] methylation in day 21 tail and that in the various tissues of the same animal at day 150 demonstrates that genistein-induced epigenetic changes persist to adulthood. The phenomenon of high interindividual coupled with low intertissue variability in methylation may represent a common characteristic of epigenetically labile genes in the mouse and human genomes whose expression is controlled by DNA methylation established early in development (Waterland and Jirtle 2004). Consequently, future studies using the [A.sup.vy] mouse model should more thoroughly investigate the role of stem cells not only in determining cell differentiation early in life but also in promoting cell differentiation during pubertal development.

Body weight data indicate that enhanced IAP methylation in the genistein-supplemented offspring increased the probability that ectopic Agouti expression is silenced, leading to a decreased incidence of adult-onset obesity. Using the [A.sup.vy] mouse model, we have demonstrated for the first time that maternal dietary supplementation is associated with not only altered fetal methylation patterns but also methylation-dependent susceptibility to disease. This finding supports the hypothesis that environmental and nutritional influences on the establishment of epigenetic gene regulatory mechanisms in early life influence adult metabolism and chronic disease susceptibility.

The lack of an association between genistein supplementation and SAM or SAH levels indicates that genistein affects DNA methylation through a mechanism that is independent of the one-carbon metabolism pathway. Genistein and other isoflavones interact with the estrogen receptor to enhance histone histone (hĭs`tōn), any of a class of protein molecules found in the chromosomes of eukaryotic cells. They complex with the DNA (see nucleic acid) and pack the DNA into tight masses of chromatin, which have the structure of coiled coils, much  acetylation acetylation /acet·y·la·tion/ (ah-set?i-la´shun) introduction of an acetyl radical into an organic molecule.

a·cet·y·la·tion
n.
 (Hung et al. 2004). Therefore, histone acetylation may open up the IAP region for methylation, leading to transcriptional deactivation. Whether genistein's enhancement of DNA methylation is beneficial or deleterious may depend on other environmental factors, such as whether the local food supply is supplemented with folic acid. Because folate folate /fo·late/ (fo´lat)
1. the anionic form of folic acid.

2. more generally, any of a group of substances containing a form of pteroic acid conjugated with l-glutamic acid and having a variety of substitutions.
 is an important cofactor cofactor

An atom, organic molecule, or molecular group that is necessary for the catalytic activity (see catalysis) of many enzymes. A cofactor may be tightly bound to the protein portion of an enzyme and thus be an integral part of its functional structure, or it may
 in one-carbon metabolism, individuals who are exposed to folic acid fortification and consume a diet high in soy may experience an additive or even synergistic effect on DNA methylation. Given the recent demonstration of the ability of environmental influences to induce epigenetic changes in the early postnatal period (Weaver et al. 2004), such an interaction could be particularly worrisome for infants fed soy formula diets in which genistein intake relative to body weight reaches levels higher than those used in the present study (Setchell et al. 1997).

The results of our study have a number of other important implications. First, the biologic importance of establishing genomic methylation patterns during early development suggests that it is essential to determine the effects of environmental factors on the epigenome during prenatal and early postnatal development, rather than just in adults. For example, insulin-like growth factor insulin-like growth factor

one of the twenty or so substances, additional to the classic bone-regulating hormones, which exert an effect on bone cell metabolism. See also somatomedin C.
 2 (IGF (Internet Governance Forum) An international organization of governments and U.N. agencies that was founded to discuss Internet issues such as security and spam. It was created at the United Nations Summit in 2005 after the U.S. 2) loss of imprinting, which places individuals at increased risk of developing colon cancer, is not caused by exposure to adult environmental factors (Cruz-Correa et al. 2004). Rather, it is a trait that is either inherited and/or induced by environmental influences early in embryonic development (Jirtle 2004). Nutritional effects on the fetal epigenome may therefore underlie the long-term cardioprotection of rats born to mothers supplemented with soy during pregnancy (Souzeau et al. 2005). Second, phytoestrogen content in laboratory animal feed is highly variable (Degen et al. 2002). Therefore, genistein's effect on fetal DNA methylation patterns could significantly influence the interpretation of hormone and other rodent assay studies (Brown and Setchell 2001; Naciff et al. 2004; Wang et al. 2005) as well as confound the interpretation of gene expression arrays and DNA methylation studies. Finally, it needs to be determined whether the relatively high genistein intake of infants consuming soy formulas is beneficial or has unintended deleterious effects on the human epigenome, especially in the United States and other countries where the food supply is fortified with folic acid.

This is the first study to demonstrate that exposure to dietary genistein in utero, at levels present in human adult populations consuming high-soy diets, affects coat color and reduces population incidence of obesity by altering the epigenome in mice. Thus, an active ingredient in soy enhances the early establishment of DNA methylation. In addition to single-nucleotide polymorphisms affecting environmentally responsive genes, our findings show that early nutritional and environmentally induced epigenetic modifications can provide an alternative mechanism for varying individual susceptibilities to environmental agents. Our results also suggest a plausible explanation for the lower incidence of certain cancers in Asians compared with Westerners (Chang et al. 2001; Lee et al. 1991) as well as the increased cancer incidence in Asians who immigrate to the United States (Ziegler et al. 1993).

CORRECTION

In "Materials and Methods," the authors have clarified that the "modified AIN-93G diet (diet 95092 with 7% corn oil substituted for 7% soybean oil; Harlan Teklad, Madison, WI)" is phytoestrogen-free.

Received 28 September 2005; accepted 26 January 2006.

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Dana C. Dolinoy, (1,2,3) Jennifer R. Weidman, (1,2) Robert A. Waterland, (4,5) and Randy L. Jirtle (1,2,3)

(1) Department of Radiation Oncology, Duke University Medical Center, Durham, North Carolina Durham is a city in the U.S. state of North Carolina. It is the county seat of Durham CountyGR6 and is the fourth-largest city in the state by population. , USA; (2) University Program in Genetics and Genomics, and (3) Integrated Toxicology Program, Duke University, Durham, North Carolina, USA; (4) Department of Pediatrics, and (5) Department of Molecular and Human Genetics, Baylor College of Medicine Baylor College of Medicine is a private medical school located in Houston, Texas, USA on the grounds of the Texas Medical Center. It has been consistently rated the top medical school in Texas and among the best in the United States. , Houston, Texas, USA

Address correspondence to R.L. Jirtle, Box 3433, Duke University Medical Center, Durham, NC 27710 USA. Telephone: (919) 684-2770. Fax: (919) 684-5584. E-mail: jirtle@radonc.duke.edu

We thank C.A. Smith for technical assistance.

This work was supported by National Institutes of Health grants ES13053, ES08823, CA25951, and T32-ES07031, and U.S. Department of Agriculture CRIS 6250-51000-049.

The authors declare they have no competing financial interests.
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Title Annotation:Research
Author:Jirtle, Randy L.
Publication:Environmental Health Perspectives
Date:Apr 1, 2006
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