Laboratory diagnosis of SARS.The virologic test results of 415 patients with severe acute respiratory syndrome Severe Acute Respiratory Syndrome (SARS) Definition Severe acute respiratory syndrome (SARS) is the first emergent and highly transmissible viral disease to appear during the twenty-first century. (SARS) were examined. The peak detection rate for SARS-associated coronavirus coronavirus /co·ro·na·vi·rus/ (ko-ro´nah-vi?rus) any virus belonging to the family Coronaviridae. Coronavirus /Co·ro·na·vi·rus/ (ko-ro´nah-vi?rus occurred at week 2 after illness onset for respiratory specimens, at weeks 2 to 3 for stool or rectal swab specimens, and at week 4 for urine specimens. The latest stool sample that was positive by reverse transcription-polymerase chain reaction (RT-PCR RT-PCR reverse transcriptase-polymerase chain reaction. See PCR1. ) was collected on day 75 while the patient was receiving intensive care. Tracheal tracheal pertaining to or emanating from trachea. tracheal aspiration see transtracheal aspiration. tracheal band sign on contrast radiography of a dilated esophagus, the impression made ventrally by the trachea. aspirate as·pi·rate v. To take in or remove by aspiration. n. A substance removed by aspiration. Aspirate The removal by suction of a fluid from a body cavity using a needle. and stool samples had a higher diagnostic yield (RT-PCR average positive rate for first 2 weeks: 66.7% and 56.5%, respectively). Pooled throat and nasal swabs, rectal swab, nasal swab, throat swab, and nasopharyngeal nasopharyngeal pertaining to the nasal and pharyngeal cavities. nasopharyngeal meatus see nasopharyngeal meatus. nasopharyngeal spasm see reverse sneeze. aspirate specimens provided a moderate yield (29.7%-40.0%), whereas throat washing and urine specimens showed a lower yield (17.3% and 4.5%). The collection procedures for stool and pooled nasal and throat swab specimens were the least likely to transmit infection, and the combination gave the highest yield for coronavirus detection by RT-PCR. Positive virologic test results in patient groups were associated with mechanical ventilation mechanical ventilation n. A mode of assisted or controlled ventilation using mechanical devices that cycle automatically to generate airway pressure. or death (p < 0.001), suggesting a correlation between viral load viral load n. The concentration of a virus, such as HIV, in the blood. viral load, n a measure of the number of virus particles present in the bloodstream, expressed as copies per milliliter. and disease severity. ********** Severe acute respiratory syndrome (SARS) is a new human disease caused by a novel coronavirus, SARS-associated coronavirus (SARS-CoV) (1-5). In Hong Kong, the first recognized outbreak of SARS occurred in early March 2003 in the Prince of Wales Hospital
n.pl the imaging and laboratory capabilities available for determining the cause of an illness. for patients with suspected cases of SARS. The diagnostic approach was based on a combination of serologic testing, reverse transcription-polymerase chain reaction (RT-PCR), and virus isolation. Here, we report our experience with the laboratory diagnosis for SARS-CoV infection during this outbreak in Hong Kong, with emphases on the viral shedding viral shedding, n process that occurs when a virus is present in bodily fluids or open wounds and can thereby be transmitted to another person, as with herpetic lesions. pattern, the diagnostic yield of various specimen types, and detection methods. Materials and Methods Patients This retrospective study retrospective study, a study in which a search is made for a relationship between one phenomenon or condition and another that occurred in the past (e.g. analyzed laboratory records of patients admitted to six public hospitals in Hong Kong This is a list of hospitals and other medical facilities in Hong Kong. Hospitals and institutions managed by the Hospital Authority Hong Kong West Cluster
n. pl. se·rol·o·gies 1. The science that deals with the properties and reactions of serums, especially blood serum. 2. evidence of SARS-CoV infection. Altogether, 433 patients who exhibited either seroconversion seroconversion /se·ro·con·ver·sion/ (-con-ver´zhun) the change of a seronegative test from negative to positive, indicating the development of antibodies in response to immunization or infection. or a fourfold rise in anti--SARS-CoV immunoglobulin (Ig) G antibody titer antibody titer The amount of a specific antibody present in the serum, usually as a result of an acquired infection; titers for IgM usually rise abruptly at the time of infection–acute phase and fall slowly; during the 'convalescent' phase, IgG ↑ and is were identified. Detection of anti-SARS-CoV IgG antibody was based on an in-house immunofluorescence Immunofluorescence A technique that uses a fluorochrome to indicate the occurrence of a specific antigen-antibody reaction. The fluorochrome labels either an antigen or an antibody. assay that used virus-infected cells. Of the 433 patients with positive serologic test results, 18 were excluded because no samples had been collected for virus detection. As a result, 415 patients were included in this study. Twelve were pediatric patients 3-16 years of age (mean 11.3, standard deviation In statistics, the average amount a number varies from the average number in a series of numbers. (statistics) standard deviation - (SD) A measure of the range of values in a set of numbers. [SD] 4.1), divided equally between girls and boys. Three hundred thirty-five were adult patients 17-64 years of age (mean 37.1, SD 11.2), with 60.9% females. The remaining 68 were elderly patients 65-97 years of age (mean 76.7, SD 8.2), with 37 (54.4%) women. Altogether, 48/335 (14.3%) of the adult group and 2/68 (2.9%), respectively, of the elderly group required ventilation and received intensive care but recovered; 4/335 (1.2%) of adults and 21/68 (30.9%) of elderly patients died of the infection. All children recovered without requiring mechanical ventilation or intensive care. Specimen Collection Respiratory, stool, and rectal swab specimens were collected in viral transport medium, and urine samples were transported in sterile containers. For some patients, throat and nasal swab samples were pooled into a single specimen container and processed as a single specimen. These samples were referred as "pooled throat and nasal swabs" for the purpose of analysis in this study. Specimens collected were refrigerated (approximately 10[degrees]C) until delivery, which were done on the same day in most circumstances. Specimens were kept in iceboxes during delivery to the designated centralized laboratory. SARS-CoV investigations were performed on fresh specimens without prior freezing and thawing. Viral RNA RNA: see nucleic acid. RNA in full ribonucleic acid One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic Detection SARS-CoV detection by RT-PCR was conducted in two laboratories based on the same primer set COR-1 (sense) 5' CAC See Consumer Advisory Council. CGT CGT Capital Gains Tax CGT Confédération Générale du Travail (French Labor Union) CGT Confederación General del Trabajo (Spanish: Federation of Trade Unions) TTC TTC Trying To Conceive TTC Toronto Transit Commission TTC Trans Texas Corridor TTC Toutes Taxes Comprises (French) TTC Trident Technical College (North Charleston, SC) TTC Temporary Traffic Control TAC 1. TAC - Translator Assembler-Compiler. For Philco 2000. 2. TAC - Terminal Access Controller. AGG AGG Aggregate AGG Allgemeines Gleichbehandlungsgesetz AGG African Gold Group, Inc. AGG Arnall Golden Gregory LLP (Atlanta, GA) AGG Aggravated AGG Asociación de Gerentes de Guatemala TTA TTA Telecommunications Technology Association (Korea) TTA Teacher Training Agency (UK) TTA Triangle Transit Authority (Raleigh/Chapel Hill/Durham, North Carolina, USA) GCT (programming, tool) GCT - A test-coverage tool by Brian Marick <marick@testing.com>, based on GNU C. Version 1.4 was ported to Sun-3, Sun-4, RS/6000, 68000, 88000, HP-PA, IBM 3090, Ultrix, Convex, SCO but not Linux, Solaris, or Microsoft Windows. AAC (Advanced Audio Coding) An audio compression technology that is part of the MPEG-2 and MPEG-4 standards. AAC, especially MPEG-4 AAC, provides greater compression and better sound quality than MP3, which also came out of the MPEG standard. GA 3', and COR-2 (antisense antisense, DNA or RNA manipulated in a laboratory so that its components (nucleotides) form a complementary copy of normal, or "sense," messenger RNA (mRNA; see nucleic acid). ) 5' AAA AAA: see American Automobile Association. (Triple A) A common single-cell battery used in a myriad of electronic devices of all variety. Like its double A (AA) cousin, it provides 1.5 volts of DC power. When used in series, the voltage is multiplied. TGT TGT Target TGT Ticket Granting Ticket (Windows 2000 Kerberos security) TGT Target Corp (stock symbol) TGT Turbine Gas Temperature TGT TDRSS Ground Terminal TGT Tank Gunnery Trainer TGT Target Tracker TTA CGC CGC Canine Good Citizen (AKC Dog Title) CGC Commission Géologique du Canada (Geological Survey of Canada) CGC Confédération Générale des Cadres (French labor union) AGG TAA TAA - Track Average Amplitude GCG GCG Genetics Computer Group GCG Glucagon GCG Good Corporate Governance GCG Global Consumer Group GCG Global Church of God GCG Generalized Conjugate Gradient GCG Global Change Game GCG Geological Curators' Group GCG Giant-Cell Granuloma TAA AA 3' (11). The specimens were centrifuged at 10,000 x g for 1 min, and 140 [micro]L of the supernatant supernatant /su·per·na·tant/ (-na´tant) the liquid lying above a layer of precipitated insoluble material. supernatant the liquid lying above a layer of precipitated insoluble material. were used for RNA extraction using the QIAamp viral RNA Mini Kit (QIAGEN, Hilden, Germany) according to the manufacturer's protocol. Reverse transcription reverse transcription n. The process by which DNA is synthesized from an RNA template. of RNA was conducted in a 20-[micro]L reaction mix containing 4.2 [micro]L of extracted RNA preparation, 2.5 [micro]mol/L of random hexamer and 50 U of reverse transcriptase Reverse transcriptase Any of the deoxyribonucleic acid (DNA) polymerases present in particles of retroviruses which are able to carry out DNA synthesis using an RNA template. (Applied Biosystems, Foster City, CA). After incubation at room temperature for 10 min and at 42[degrees]C for 30 min, the reaction was stopped by heating at 95[degrees]C for 5 min and chilled on ice. The subsequent PCR PCR polymerase chain reaction. PCR abbr. polymerase chain reaction Polymerase chain reaction (PCR) was conducted in a 50-[micro]L reaction mix containing 5 [micro]L of cDNA template, 1 [micro]mol/L of each primer COR-1 and COR-2, 1.5 U Taq polymerase (Amersham Biosciences, Uppsala, Sweden), 0.2 mmol/L of each deoxynucleoside triphosphate triphosphate /tri·phos·phate/ (tri-fos´fat) a salt containing three phosphate radicals. tri·phos·phate n. A salt or ester containing three phosphate groups. and 2.0 mmol/L magnesium chloride magnesium chloride Warning - High-alert drug! Chloromag, Mag 64, Mag Delay, Slo-Mag Pharmacologic class: Mineral Therapeutic class: . The cycling conditions were 94[degrees]C for 3 min; 45 cycles of 94[degrees]C for 30 sec, 60[degrees]C for 30 sec, and 72[degrees]C for 1 min, and a final extension at 72[degrees]C for 7 min. The PCR amplicons were visualized by ethidium bromide staining after agarose gel electrophoresis Agarose gel electrophoresis is a method used in biochemistry and molecular biology to separate DNA, RNA, or protein molecules by size. This is achieved by moving negatively charged nucleic acid molecules through an agarose matrix with an electric field (electrophoresis). . The same RNA extraction method was used in laboratory B. The RT-PCR was carried out in a single-tube system (Superscript Any letter, digit or symbol that appears above the line. For example, 10 to the 9th power is written with the 9 in superscript (109). Contrast with subscript. One-Step RT-PCR with Platinum Taq, Invitrogen, Carlsbad, CA), in a 25-[micro]L reaction mix containing 0.6 [micro]mol/L of each COR-1 and COR-2 primer, 0.2 mmol/L of each deoxynucleoside triphosphate and 1.2 mmol/L magnesium sulphate. The reverse transcription was conducted at 54[degrees]C for 30 min. After the mixture was held at 94[degrees]C for 3 min, it underwent 45 cycles of amplification at 94[degrees]C for 45 sec, 60[degrees]C for 45 sec, 72[degrees]C for 45 sec, and final extension at 72[degrees]C for 7 min. The PCR amplicon was also detected by agarose gel electrophoresis as in laboratory A. All reagent preparation, sample extraction, amplification, and amplicon detection procedures were conducted in separate areas and under strengthened precautions to avoid cross-contamination. The lower detection limit of the RT-PCR assays was determined by testing preparations with known copies of SARS-CoV as determined by real-time RT-PCR. Both laboratories showed a lower detection limit of 50 viral copies per reaction. In all test runs, positive controls containing approximately 100 copies of viral RNA in viral transport medium were included, and double distilled water Double distilled water (abbreviated "ddH2O" or "Bidest. water") is prepared by double distillation of water. It is used, among other things, when single distillation does not lead to sufficiently pure water for some applications in biochemistry. was used as a negative control. Positive samples were confirmed by repeating the RNA extraction and RT-PCR from the original samples. Virus Isolation Virus isolation for SARS-CoV was performed in laboratory B. Specimens were injected into African green monkey (Vero E6) cell monolayers. For stool or rectal swab samples, the suspension was passed through a 0.45-[micro]m filter before injection. The cell culture tubes were examined daily for diffuse, refractile, rounding cytopathic effects characteristic of SARS-CoV. When cytopathic effects were observed, the cells were stained by the indirect immunofluorescence technique with a convalescent-phase serum sample collected from a SARS patient. The identity of the isolate was further confirmed by RT-PCR. Statistical Analysis Statistical tests were performed by using the Statistical Package for the Social Sciences (statistics, tool) Statistical Package for the Social Sciences - (SPSS) The flagship program of SPSS, Inc., written in the late 1960s. ["SPSS X User's Guide", SPSS, Inc. 1986]. software (SPSS A statistical package from SPSS, Inc., Chicago (www.spss.com) that runs on PCs, most mainframes and minis and is used extensively in marketing research. It provides over 50 statistical processes, including regression analysis, correlation and analysis of variance. 10.1.0, Inc., Chicago, IL). The chi-square test chi-square test: see statistics. was used to analyze categorical variables. All statistical tests were two-tailed and p values [less than or equal to] 0.05 were regarded as significant. Results Specimen Profile Altogether, 624 respiratory specimens, 671 stool or rectal swab specimens, and 314 urine specimens were collected from the 415 study patients for RT-PCR; 738 respiratory, 810 stool or rectal swab, and 531 urine specimens were submitted for virus isolation; and 558 respiratory, 318 stool or rectal swab, and 296 urine specimens were tested by both RT-PCR and virus isolation. The mean number of specimens collected from each patient was 5.3 (range 1-32, SD 5.1). The mean time of collection of the first specimen was 13.5 days (range 1-88, SD 16.5) after the onset of symptoms (Figure 1). Patients whose first specimens were collected at a later stage of illness had become ill early in the outbreak when no diagnostic test was available. [FIGURE 1 OMITTED] Shedding Profile To analyze the profile of viral shedding, specimens were grouped into categories: respiratory, stool or rectal swab, and urine. Respiratory specimens included tracheal aspirate, nasopharyngeal aspirate, throat swab, throat washing, nasal swab, and pooled throat and nasal swabs. The viral shedding profile is shown in Figure 2; the number of specimens tested is shown in Table 1. Stool/rectal swab specimens provided the highest positive rate by RT-PCR, followed by respiratory and urine specimens. The RT-PCR positive rate for respiratory specimens increased slightly from week 1 to week 2 after the onset of illness and then dropped to lower levels at week 3 and week 4. The positive rate for stool/rectal swab peaked at week 2 and week 3 and then dropped sharply. The positive rate for urine specimens increased gradually and peaked at week 4. Viral shedding beyond week 6 was rare, with only three stool samples (collected on day 54, day 67, and day 75, respectively) and one respiratory sample collected on day 50 positive by RT-PCR. As for virus isolation, the latest positive specimen was collected on day 31 for a respiratory specimen, day 23 for a urine specimen, and day 6 for a stool sample. [FIGURE 2 OMITTED] The RT-PCR results of specimens collected within the first 3 weeks after the onset of illness were analyzed to further clarify the viral shedding pattern. The positive rate for respiratory specimens began to increase on day 5 and remained high during the second week. The positive rate for stool/rectal swab specimens peaked at days 9 and 10 and remained high during the second and third week, whereas the detection rate for urine specimens started to increase at the end of the second week (Figure 3). [FIGURE 3 OMITTED] Diagnostic Yield The RT-PCR and virus isolation results of different specimen types collected within the first 4 weeks after the onset of symptoms are shown in Table 2. When RT-PCR was used for virus detection, tracheal aspirate and stool provided a high diagnostic yield, with an average positive rate of 66.7% and 56.5%, respectively, for the first 2 weeks. Pooled throat and nasal swabs, rectal swab, nasal swab, throat swab and nasopharyngeal aspirate provided a moderate yield with average positive rates ranging from 29.7% to 40.0% for the first 2 weeks, whereas throat washing and urine specimens provided a lower yield with an average positive rate of 17.3% and 4.5%, respectively. The yield from virus isolation was much lower than from RT-PCR, and no specimen was positive by culture but negative by RT-PCR. RT-PCR Versus Isolation To compare the sensitivity of RT-PCR and virus isolation for detecting SARS-CoV, a subgroup analysis was performed on 1,172 specimens that had been submitted for both RT-PCR and virus isolation. The isolation/RT-PCR index, defined as the number of isolation-positive specimens per RT-PCR-positive specimens, was highest for respiratory samples, particularly for pooled throat and nasal swabs, tracheal aspirate, and nasopharyngeal aspirate. The isolation/RT-PCR index for stool or rectal swab samples was approximately 5- to 10-fold lower when compared with that for respiratory specimens (Table 3). Positive Rate by Patient Altogether, 132 (31.8%) of the 415 study patients had SARS-CoV detected by RT-PCR or virus isolation. To analyze factors associated with positive virologic testing results, a subgroup analysis was performed on 342 patients whose first specimens were collected within 4 weeks of illness onset. Within this subgroup, 128 (37.4%) patients had one or more positive results by RT-PCR or virus isolation. The mean number of positive specimens among these patients was 1.8 (range 1-10, SD 1.7). The characteristics of patients with and without positive specimens are shown in Table 4. A higher positive detection rate for SARS-CoV was observed for patients with more severe disease (p < 0.001 by chi-square test). Discussion Identifying the causal agent of the novel emerging infection, SARS, shortly after recognizing its spread in humans, was a remarkable medical accomplishment. This achievement led to the hope for an accurate laboratory diagnosis to guide patient management and to control the spread of infection. During the course of the outbreak, a few centralized laboratories were set up in Hong Kong. All possible resources were deployed to provide a rapid diagnostic service for SARS patients, and a turnaround time (1) In batch processing, the time it takes to receive finished reports after submission of documents or files for processing. In an online environment, turnaround time is the same as response time. of 24 to 48 hours was achieved for RT-PCR. From our experience, more than half of the patients did not have any positive virologic findings. For these patients, the diagnosis could not be confirmed until a convalescent-phase serum specimen was available at a later stage. Thoroughly understanding the viral shedding pattern, the diagnostic yield of various specimen types, and various detection methods is crucial to improve the diagnostic performance. For most acute respiratory viral infections, the maximal viral shedding occurs in the first few days after illness onset and seldom lasts for more than 10 days (12-14). However, our data indicated that respiratory shedding of SARS-CoV increased over the first week and remained high during the second week. In addition, respiratory shedding >2 weeks after the onset of symptoms was common. This pattern of respiratory shedding is consistent with a previous report of a community outbreak in Hong Kong (15). We found that the peak of viral shedding in stool occurred a few days after that of respiratory shedding. The ability to detect virus in stool specimens peaked at the beginning of the second week and remained high over week 3 and week 4. Occasionally, the shedding of virus in stool could last for more than 6 weeks after the onset of symptoms. The viral shedding peak in urine occurred even later, at weeks 3-4. In summary, viral shedding of SARS-CoV peaks at a time later than expected and occurs when patients are being hospitalized. This, together with the prolonged viral shedding, could partly explain the propensity for this infection to be transmitted in healthcare settings. We observed that all those who shed virus for a prolonged period (arbitrarily defined as the shedding viruses >6 weeks after onset of symptoms) had their positive samples collected while still critically ill and had received intensive care. The infectiousness of these patients is difficult to discuss because the virus was detected by RT-PCR but not by virus isolation. Nevertheless, further investigations on whether the adverse outcome could be related to inadequate viral clearance are worth pursuing. Available data that compare the diagnostic yield of various specimen types are still limited. Wu et al. found that virus was detected in 73% (49/67) of liquid nasopharyngeal gargling Gargling is a common method of cleansing the throat, especially if one has a sore throat or upper-respiratory virus or infection. The physical act of gargling usually requires that one tilts the head back, allowing a mouthful of liquid to sit in the upper throat. samples by a fluorescent PCR (16). However, our data showed that throat washing samples were the most inferior respiratory specimens. In addition to the difference in the sensitivity of detection assays used, the procedures of gargle gargle /gar·gle/ (gahr´g'l) 1. a solution for rinsing mouth and throat. 2. to rinse the mouth and throat by holding a solution in the open mouth and agitating it by expulsion of air from the lungs. sample collection could have affected the diagnostic yield. Yam et al. reported that nasopharyngeal aspirate specimens collected between days 1 and 5 after admission provided a similar diagnostic yield when compared to stool samples collected between days 5 and 10 (17). However, data comparing respiratory and stool specimens collected at the same period were not available in their study. In an investigation on a community outbreak in Hong Kong, Peiris et al. reported that respiratory viral shedding peaked during the second week (15). A high positive rate was also obtained from stool samples collected during the second week, but the yield for first week stool samples was not available for comparison. Nasopharyngeal aspirate is generally regarded as the specimen of choice for detecting respiratory viruses. However, for SARS, the great risk of generating infectious aerosols during the aspiration procedure needs to be considered. We found that pooled throat and nasal swab specimens provided a higher diagnostic yield compared with nasopharyngeal aspirates. Our data indicate that a combination of stool sample and pooled throat and nasal swab specimens should be the specimens of choice for a safe and high-yield SARS-CoV detection. In situations where specimen load is high, pooling of stool sample with throat and nasal swabs for RT-PCR can be considered to minimize the reagent and personnel costs. SARS-CoV was first isolated from a monkey kidney cell line and is known to produce characteristic cytopathic effects after a few days of incubation in Vero or Vero E6 cell monolayers. At present, the ideal in vitro in vitro /in vi·tro/ (in ve´tro) [L.] within a glass; observable in a test tube; in an artificial environment. in vi·tro adj. In an artificial environment outside a living organism. growth conditions have not yet been elucidated. Our data on isolation/RT-PCR index showed that about 10%-50% of the RT-PCR-positive respiratory and urine specimens had virus grown from Veto E6 cell culture. However, stool and rectal swab specimens had a much lower isolation/RT-PCR index. The presence of toxic substances in stool or rectal swab samples may have interfered with virus isolation. However, toxicity was only occasionally observed on Vero E6 monolayers after adding stool or rectal swab samples. SARS-CoV can survive for at least 2-4 days at room temperature when mixed with diarrheal or normal stool specimens (18). Thus, the poor isolation rate could not be a result of viral inactivation inactivation /in·ac·ti·va·tion/ (in-ak?ti-va´shun) the destruction of biological activity, as of a virus, by the action of heat or other agent. by fecal contents during specimen storage and transport. The big difference in isolation rate from stool compared to respiratory and urine samples deserve further investigation, and the possibility of viral growth interference due the presence of IgA antibodies needs to be considered. We found that positive virologic results were associated with more adverse outcomes in patients. This observation could be confounded by the fact that only high-yield specimens, e.g., tracheal aspirate, could be obtained from intubated patients. We verified this point by examining the results of testing other samples from patients with viruses detected from tracheal aspirate samples. We found that all except one of these patients also had viruses detected from other specimen types. Thus, our observations are in line with the fact that more severely affected patients shed a higher load of virus, which facilitated the detection of the virus. Several options could be considered to improve the ability to accurately diagnose SARS-CoV infection. First, detection of viremia viremia /vi·re·mia/ (vi-re´me-ah) the presence of viruses in the blood. vi·re·mi·a n. The presence of viruses in the bloodstream. should be included in the diagnostic algorithm because we have found SARS-CoV RNA from blood samples taken within the first few days of onset of symptoms. If this approach is successful, it will close the gap caused by lower virus shedding virus shedding n. Excretion of virus from the infected host by any route. from the gastrointestinal or respiratory tract respiratory tract n. The air passages from the nose to the pulmonary alveoli, including the pharynx, larynx, trachea, and bronchi. Respiratory tract that occurs in the first few days after the onset of symptoms. Second, a SARS-CoV-specific monoclonal antibody monoclonal antibody, an antibody that is mass produced in the laboratory from a single clone and that recognizes only one antigen. Monoclonal antibodies are typically made by fusing a normally short-lived, antibody-producing B cell (see immunity) to a fast-growing would be valuable in developing an immunofluorescence assay to detect virus-infected cells from respiratory samples. Such an approach has been shown to provide high sensitivity for influenza and respiratory syncytial viruses. Third, an assay should be developed to detect viral antigens from stool samples as is available for rotavirus rotavirus /ro·ta·vi·rus/ (ro´tah-vi?rus) any member of the genus Rotavirus. ro´taviral Rotavirus /Ro·ta·vi·rus/ (ro´tah-vi?rus detection. Further work to improve the sensitivity and specificity of diagnostic assays for SARS-CoV is needed. The unusual shedding pattern of SARS-CoV should be considered when formulating infection control strategies.
Table 1. Specimens tested after onset of illness
Specimen type
Stool/rectal swab Respiratory
Collection Virus
time (wk) RT-PCR (a) isolation RT-PCR
1 32 38 243
2 35 40 134
3 44 84 57
4 43 92 37
5 96 113 41
6 110 123 30
7 80 84 18
8 54 55 14
9 49 52 16
10 34 35 16
11 44 44 10
12 21 21 4
13 16 16 2
14 7 7 2
15 5 5 0
16 1 1 0
Specimen type
Respiratory Urine
Collection Virus Virus
time (wk) isolation RT-PCR isolation
1 280 75 110
2 153 82 86
3 62 33 41
4 36 21 35
5 57 29 64
6 50 26 72
7 30 9 38
8 22 10 33
9 27 6 26
10 12 9 10
11 5 9 11
12 2 2 3
13 1 2 1
14 1 1 1
15 0 0 0
16 0 0 0
(a) RT-PCR, reverse transcription-polymerase
chain reaction.
Table 2. Diagnostic yield of specimen types to detect SARS-CoV
according to time of collection
No. positive specimens/no. tested for
SARS-CoV (%)
RT-PCR
Specimen type 1 week 2 weeks 3-4 weeks
Respiratory
Tracheal aspirate 1/2 (50.0) 1/1 (100) 4/4 (100)
Pooled throat and 6/17 (35.3) 2/3 (66.7) 2/5 (40.0)
nasal swabs
Nasal swab 9/27 (33.3) 5/14 (35.7) 1/17 (5.9)
Nasopharyngeal 39/138 (28.3) 15/44 (34.1) 6/10 (60.0)
aspirate
Throat swab 5/19 (26.3) 5/14 (35.7) 3/10 (30.0)
Throat washing 4/40 (10.0) 13/58 (22.4) 1/48 (2.1)
Nonrespiratory
Rectal swab 5/11 (45.5) 2/10 (20.0) 3/7 (42.9)
Stool 9/21 (42.9) 17/25 (68.0) 34/80 (42.5)
Urine 2/75 (2.7) 5/82 (6.1) 6/54 (11.1)
No. positive specimens/no. tested for
SARS-CoV (%)
Virus isolation
Specimen type 1 week 2 weeks 3-4 weeks
Respiratory
Tracheal aspirate 2/3 (66.7) 1/1 (100) 0/3
Pooled throat and 4/18 (22.2) 0/3 0/1
nasal swabs
Nasal swab 3/29 (10.3) 2/18 (11.1) 0/19
Nasopharyngeal 23/171 (13.5) 6/54 (11.1) 0/9
aspirate
Throat swab 2/23 (8.7) 0/15 1/15 (6.7)
Throat washing 0/36 1/62 (1.6) 0/51
Nonrespiratory
Rectal swab 0/14 0/12 0/35
Stool 2/24 (8.3) 0/28 0/141
Urine 0/110 0/86 2/76 (2.6)
(a) SARS-CoV, severe acute respiratory syndrome--associated
coronavirus; RT-PCR, reverse transcription--polymerase chain
reaction.
Table 3. Comparison on positive rates of RT-PCR and virus
isolation (a)
No. (%) of specimens tested positive (b)
Virus Isolation/
Specimen type (no.) RT-PCR isolation RT-PCR index (c)
Pooled throat and 8 (26.7) 4 (13.3) 0.50
nasal swab (30)
Tracheal aspirate (13) 6 (46.2) 2 (15.4) 0.33
Nasopharyngeal 52 (28.4) 14 (7.7) 0.27
aspirate (183)
Throat swab (58) 11 (19.0) 2 (3.4) 0.18
Nasal swab (56) 14 (25.0) 2 (3.6) 0.14
Urine (296) 14 (4.7) 2 (0.7) 0.14
Throat washing (218) 17 (7.8) 1 (0.5) 0.06
Stool (262) 70 (26.7) 2 (0.8) 0.03
Rectal swab (56) 12 (21.4) 0 (0) 0
(a) RT-PCR, reverse transcription--polymerase chain reaction.
(b) Only specimens tested by both RT-PCR and virus isolation are
included.
(c) No. of isolation-positive specimens per RT-PCR-positive
specimen.
Table 4. Positive rates for SARS-CoV for various patient groups
SARS-CoV result by
RT-PCR/ virus isolation
Patient characteristics (n) (b) No. (%) of positive
patients (c) (n = 128)
Sex
Female (210) 83 (39.5)
Male (132) 45 (34.1)
Age group (years)
[less than or equal to] 16 (8) 4 (50.0)
17-64 (271) 96 (35.4)
[greater than or equal to] 65 (63) 28 (44.4)
No. of specimens tested
1-2 (116) 39 (33.6)
3-5 (111) 36 (32.4)
[greater than or equal to] 6 (115) 53 (46.1)
Time of first specimen collected
(weeks after illness onset)
1 (251) 97 (38.6)
2 (57) 21 (36.8)
3 (11) 4 (36.4)
4 (23) 6 (26.1)
Disease outcome
Recovered, not requiring ventilation 91 (32.6)
or intensive care (279)
Recovered after ventilation or 22 (55.0)
intensive care (40)
Died (23) 15 (65.2)
SARS-CoV result by
RT-PCR/virus isolation
Patient characteristics (n) (b) No. (%) of negative
patients (n = 214)
Sex
Female (210) 127 (60.5)
Male (132) 87 (65.9)
Age group (years)
[less than or equal to] 16 (8) 4 (50.0)
17-64 (271) 175 (64.6)
[greater than or equal to] 65 (63) 35 (55.6)
No. of specimens tested
1-2 (116) 77 (66.4)
3-5 (111) 75 (67.6)
[greater than or equal to] 6 (115) 62 (53.9)
Time of first specimen collected
(weeks after illness onset)
1 (251) 154 (61.6)
2 (57) 36 (63.2)
3 (11) 7 (63.6)
4 (23) 17 (73.9)
Disease outcome
Recovered, not requiring ventilation 188 (67.4)
or intensive care (279)
Recovered after ventilation or 18 (45.0)
intensive care (40)
Died (23) 9 (34.8)
(a) SARS-CoV, severe acute respiratory syndrome--associated
coronavirus.
(b) Only patients with their first specimens collected within
4 weeks of onset of illness are included.
(c) Patients with one or more specimen(s) positive for SARS-CoV
by RT-PCR and/or virus isolation.
Acknowledgements We express our appreciation to all healthcare workers in Hong Kong Special Administrative Region A special administrative region may be:
References (1.) Drosten C, Gunther S, Preiser W, van der Werf S, Brodt HR, Becker S, et al. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N Engl J Med 2003;348:1967-76. (2.) Fouchier RA, Kuiken T, Schutten M, van Amerongen G, van Doornum GJ, van Den Hoogen BG, et al. Aetiology aetiology see etiology. : Koch's postulates Koch's postulates pl.n. The series of conditions that must be met in order to establish a microorganism as the causative agent of a disease, namely: it must be present in all cases of the disease; inoculations of its pure cultures must produce the fulfilled for SARS virus. Nature 2003;423:240. (3.) Ksiazek TG, Erdman D, Goldsmith US, Zaki SR, Peret T, Emery S, et al. A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med 2003;348:1947-58. (4.) Kuiken T, Fouchier RAM, Schutten M, Rimmelzwaan GF, van Amerongen G, van Riel ri·el n. See Table at currency. [Origin unknown.] Noun 1. riel - the basic unit of money in Cambodia; equal to 100 sen D, et al. Newly discovered coronavirus as the primary cause of severe acute respiratory syndrome. Lancet 2003;362:263-70. (5.) Peiris JS, Lai ST, Poon poon n. Any of several trees of the genus Calophyllum, of southern Asia, having light hard wood used for masts and spars. [Sinhalese p LL, Guan guan: see curassow. Y, Yam LY, Lim W, et al. Coronavirus as a possible cause of severe acute respiratory syndrome. Lancet 2003;361:1319-25. (6.) Lee N, Hui D, Wu A, Chan P, Cameron P, Joynt GM, et al. A major outbreak of severe acute respiratory syndrome in Hong Kong. N Engl J Med 2003;348:1986-94. (7.) Tomlinson B, Cockram C. SARS: experience at Prince of Wales Hospital, Hong Kong. Lancet 2003;361:1486-7. (8.) Riley S, Fraser C, Donnelly CA, Ghani AC, Abu-Raddad LJ, Hedley AJ, et al. Transmission dynamics of the etiological etiological pertaining to etiology. etiological diagnosis the name of a disease which includes the identification of the causative agent, e.g. Streptococcus agalactiae mastitis. agent of SARS in Hong Kong: impact of public health interventions. Science 2003;300:1961-6. (9.) World Health Organization. Cumulative number of reported probable cases of SARS [accessed 2004 Mar 3]. Available from: http://www.who.im/csr/sars/country/table2003_09_23/en/ (10.) World health Organization. Update 86--Hong Kong removed from list of areas with local transmission [accessed 2003 Jul 24]. Available from: http://www.who.int/csr/don/2003_06_23/en/print.html (11.) World Health Organization. PCR primers for SARS developed by WHO Network Laboratories [accessed 2003 Apt 27]. Available from: http://www.who.int/csr/sars/primers/en/ (12.) Larranaga C, Kajon A, Villagra E, Avendano LF. Adenovirus adenovirus Any of a group of spheroidal viruses, made up of DNA wrapped in a protein coat, that cause sore throat and fever in humans, hepatitis in dogs, and several diseases in fowl, mice, cattle, pigs, and monkeys. surveillance on children hospitalized for acute lower respiratory infections in Chile (1988-1996). J Meal Virol 2000;60:342-6. (13.) Frank AL, Taber LH, Wells CR, Wells JM, Glezen WP, Paredes A. Patterns of shedding of myxoviruses and paramyxoviruses in children. J Infect Dis 1981;144:433-41. (14.) McIntosh K, McQuillin J, Gardner PS. Cell-free and cell-bound antibody in nasal secretions from infants with respiratory syncytial virus infection Respiratory Syncytial Virus Infection Definition Respiratory syncytial virus (RSV) is a virus that can cause severe lower respiratory infections in children under the age of two, and milder upper respiratory infections in older children and adults. . Infect Immun 1979;23:276-81. (15.) Peiris JS, Chu CM, Cheng VC, Chan KS, Hung IF, Poon LL, et al. Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study. Lancet 2003;361:1767-72. (16.) Wu X, Cheng G, Di B, Yin A, He Y, Wang M, et al. Establishment of a fluorescent polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is method for the detection of the SARS-associated coronavirus and its clinical application. Chin Med J 2003;116:988-90. (17.) Yam WC, Chan KH, Poon LLM LLM abbr. Latin Legum Magister (Master of Laws) LLM Master of Laws [Latin Legum Magister] Noun 1. , Guan Y, Yuen KY, Seto WH, et al. Evaluation of reverse transcription-PCR assays for rapid diagnosis of severe acute respiratory syndrome associated with a novel coronavirus. J Clin Microbiol 2003;41:4521-4. (18.) World health Organization. First data on stability and resistance of SARS coronavirus compiled by members of WHO laboratory network [accessed 2003 Jul 24]. Available from: http://www.who.int/csr/ sars/survival_2003_0504/en/print.html Dr. Paul Chan is a clinical virologist virologist microbiologist specializing in virology. and associate professor at the Department of Microbiology, Faculty of Medicine, the Chinese University of Hong Kong The motto of the university is "博文約禮" in Chinese, meaning "to broaden one's intellectual horizon and keep within the bounds of propriety". . His research interests include emerging viral infection, viral epidemiology, diagnostic virology virology, study of viruses and their role in disease. Many viruses, such as animal RNA viruses and viruses that infect bacteria, or bacteriophages, have become useful laboratory tools in genetic studies and in work on the cellular metabolic control of gene expression , and viral oncology. Address for correspondence: Paul K.S. Chan, Department of Microbiology, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, New Territories, Hong Kong SAR (Segmentation And Reassembly) The protocol that converts data to cells for transmission over an ATM network. It is the lower part of the ATM Adaption Layer (AAL), which is responsible for the entire operation. See AAL. SAR - segmentation and reassembly , China; fax: 852-2647-3227; email: paulkschan@cuhk.edu.hk Paul K.S. Chan, * Wing-Kin To, ([dagger]) King-Cheung Ng, * Rebecca K. Y. Lam, * Tak-Keung Ng, ([dagger]) Rickjason C. W. Chan, * Alan Wu, * Wai-Cho Yu, ([dagger]) Nelson Lee, * David S. C. Hui, * Sik-To Lai, ([dagger]) Ellis K. L. Hon, * Chi-Kong Li, * Joseph J. Y. Sung, * and John S. Tam * * The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, New Territories, Hong Kong Special Administrative Region (SAR), China; and ([dagger]) Princess Margaret Hospital There are several Princess Margaret Hospitals :
|
|
||||||||||||||||||||

Printer friendly
Cite/link
Email
Feedback
Reader Opinion