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Hepatitis E virus epidemiology in industrialized countries. (Research).


To determine the prevalence of Hepatitis E Hepatitis E Definition

The hepatitis E virus (HEV) is a common cause of hepatitis that is transmitted via the intestinal tract, and is not caused by the hepatitis A virus.
 virus (HEV HEV
abbr.
hepatitis E virus



HEV

hemagglutinating encephalomyelitis virus of pigs.
) in industrialized in·dus·tri·al·ize  
v. in·dus·tri·al·ized, in·dus·tri·al·iz·ing, in·dus·tri·al·iz·es

v.tr.
1. To develop industry in (a country or society, for example).

2.
 nations, we analyzed the excretion of HEV strains by the populations of Spain, France, Greece, Sweden, and the United States. Twenty of 46 (43.5%) urban sewage samples collected in Barcelona from 1994 to 2002 tested positive for HEV. We identified 15 HEV strains, which were similar to two HEV isolates previously described in Barcelona in clinical samples and to strains from diverse geographic HEV-nonendemic areas. We also identified two HEV strains in sewage samples from Washington, D.C., and Nancy, France; these samples were also positive for Hepatitis A virus Noun 1. hepatitis A virus - the virus causing hepatitis A
enterovirus - any of a group of picornaviruses that infect the gastrointestinal tract and can spread to other areas (especially the nervous system)
. In addition, we studied the role of pigs as a reservoir for HEV and identified one new swine HEV strain. Our results suggest that HEV may be more prevalent than previously considered in industrialized countries and that variants of the virus circulate simultaneously in one region.

**********

Hepatitis E virus (HEV) infection is a major cause of epidemic and acute sporadic hepatitis in many areas of Asia, Africa, and Mexico (1,2), where HEV is considered endemic. HEV is an RNA virus RNA virus
n.
Any of a group of viruses whose nucleic acid core is composed of RNA, including the picornaviruses, retroviruses, and paramyxoviruses.
 enterically transmitted with a single serotype serotype /se·ro·type/ (ser´o-tip) the type of a microorganism determined by its constituent antigens; a taxonomic subdivision based thereon.

se·ro·type
n.
See serovar.

v.
, which affects mainly young adults. In countries where the virus is endemic, HEV is associated with >50% of sporadic acute hepatitis acute hepatitis Clinical medicine Liver inflammation of abrupt onset, which may be due to a viral infection–eg HAV or toxins Clinical Low-grade fever, anorexia, N&V, fatigue, malaise, headache, photophobia, pharyngitis, cough; later, dark urine, light  cases. The disease is self-limited but sometimes has severe complications and a high case-fatality rate, particularly in pregnant women (approximately 20%) (3). North America and Europe have traditionally been considered nonendemic for HEV; most HEV infections in those regions are considered to be imported, although seroprevalence seroprevalence Immunology The proportion of a population that is seropositive–ie, has been exposed to a particular pathogen or immunogen; the seropositivity of a population is calculated as the number of individuals who produce a particular antibody divided  ranges from 1% to 5% (4). In the last few years, some HEV strains associated with sporadic acute hepatitis have been isolated from human serum samples in North America (5) and Europe (i.e., Italy, Greece, Spain, and the United Kingdom) (6,7). Molecular analyses have shown that these strains form a group of HEV isolates that are genetically divergent compared with strains from HEV-endemic countries (8).

Evidence also exists that some animals can be reservoirs of HEV; for example, HEV infection has been demonstrated in swine (9). Swine and human HEV strains from a particular geographic region often appear to be closely related genetically (6,9-11). Transmission of HEV infection during outbreaks primarily occurs through contaminated water (12). Unlike other enterically transmitted infections, person-to-person transmission of HEV occurs infrequently (13).

We investigated the level of infection in regions where HEV is considered nonendemic by analyzing the excreted virus in the urban sewage of diverse geographic areas. The excretion and epidemiology of HEV was compared to the excretion and epidemiology of Hepatitis A virus (HAV HAV hepatitis A virus.

HAV
abbr.
hepatitis A virus


HAV Hepatitis A virus, see there
) (14). We also analyzed swine fecal samples to identify evidence of HEV infection in pigs.

Material and Methods

Sewage Samples

Urban sewage samples were collected at the entry of a water treatment plant receiving 670,000 [m.sup.3]/day of waste products from Barcelona, Spain (population: approximately 1.8 million inhabitants
:This article is about the video game. For Inhabitants of housing, see Residency
Inhabitants is an independently developed commercial puzzle game created by S+F Software. Details
The game is based loosely on the concepts from SameGame.
). From the sewage network of this city, we collected 26 samples (taken every 2 weeks) from June 2000 to May 2001 and 8 samples (taken monthly) from June 2001 to January 2002. We also tested 12 sewage samples previously collected from the same area and stored at -80[degrees]C: 2 from 1994, 2 from 1995, 2 from 1996, 3 from 1997, 1 from 1998, and 2 from 1999. Each sample was collected in a sterile 500-mL polyethylene container, kept at 4[degrees]C for <8 h until viral particles were concentrated in phosphate-buffered saline (PBS PBS
 in full Public Broadcasting Service

Private, nonprofit U.S. corporation of public television stations. PBS provides its member stations, which are supported by public funds and private contributions rather than by commercials, with educational, cultural,
, pH 7.3), and stored at -80[degrees]C.

We obtained urban sewage samples from other countries, as follows: five samples from Patras, Greece, in June-July 1999; five samples from Washington, D.C., United States, in December 1999; four samples from Nancy, France, in March 1998; and four samples from Umea, Sweden, in September-October 1997. These samples were collected and shipped, frozen, to Spain where the viral particles were concentrated in PBS and stored at -80[degrees]C.

Human Serum Samples

We contacted 13 patients seen in the emergency room of the Hospital General Valle Hebron, Barcelona, Spain, for acute hepatitis over the last 12 years who had tested positive for immunoglobulin (Ig) G anti-HEV. A follow-up serum sample was collected in order to evaluate the durability of antibody response. These samples were stored at -80[degrees]C.

Animal Samples

Seventy-three serum samples were obtained from healthy pigs in three commercial herds in Catalonia, Spain: 43 weaned pigs (3-9 weeks old), 10 fattening fat·ten  
v. fat·tened, fat·ten·ing, fat·tens

v.tr.
1. To make plump or fat.

2. To fertilize (land).

3.
 pigs (10-22 weeks old), 8 gilts (young sows), and 12 sows. Blood samples were taken aseptically from the vena cava vena cava

Either of two major veins that deliver oxygen-depleted blood to the right side of the heart. The superior vena cava drains the upper body, and the inferior vena cava drains the lower body. See also cardiovascular system, circulation.
 or jugular vein jugular vein
n.
Any of the three jugular veins: anterior, external, and internal.
, and the serum obtained by centrifugation Centrifugation

A mechanical method of separating immiscible liquids or solids from liquids by the application of centrifugal force. This force can be very great, and separations which proceed slowly by gravity can be speeded up enormously in centrifugal
 was stored at -80[degrees]C until tested.

Thirty fecal samples from pigs of various ages were collected from the same three herds. Individual samples were taken and later pooled with samples from 3-5 animals in the same age group. Samples from the "fattening" pigs were collected from different places in their pens, each one containing 10-15 animals.

Serologic Tests of Human Serum Samples

Commercially available enzyme immunoassays (Abbott Laboratories, Abbott Park, IL) were used for the detection of hepatitis B surface antigen hepatitis B surface antigen
n. Abbr. HBsAg
An antigen derived from the surface of the hepatitis B virus that is present in the blood in active hepatitis B infection. Also called Australia antigen.
, IgM anti-hepatitis B core, IgM anti-hepatitis C virus (HCV HCV
abbr.
hepatitis C virus


HCV 1 Hepatitis C virus, see there 2. Human coronavirus. See Coronavirus.
), anti-HAV, and IgG anti-HEV. HCV-RNA was analyzed by polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  (PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
) (Amplicor HCV, monitor test version 2.0; Hoffman-La Roche Inc., Nutley, NJ).

Serologic Tests of Swine Serum Samples

A commercially available enzyme immunoassay Immunoassay

An assay that quantifies antigen or antibody by immunochemical means. The antigen can be a relatively simple substance such as a drug, or a complex one such as a protein or a virus.
 (Abbott Laboratories) was used, with some modifications to detect IgG anti-HEV in pigs. Hyperimmune hyperimmune /hy·per·im·mune/ (hi?per-i-mun´) possessing very large quantities of specific antibodies in the serum.

hyperimmune

possessing very large quantities of specific antibodies in the serum.
 serum from a pig experimentally inoculated with the porcine-HEV strain and preimmune serum from a noninoculated pig and a Rhesus Monkey rhesus monkey: see macaque.
rhesus monkey

Sand-coloured macaque (Macaca mulatta), widespread in South and Southeast Asian forests. Rhesus monkeys are 17–25 in. (43–64 cm) long, excluding the furry 8–12-in.
 (Macaca Macaca

genus of Old World monkeys very popular in zoos and for some aspects of human laboratory medicine. See macaque.
 mulatta) (serum donated by S.U. Emerson and R.H. Purcell) were used as positive and negative controls, respectively.

Control Viruses

Fecal suspensions obtained from Rhesus Monkeys infected with HEV Barcelona (BCN BCN Beacon
BCN Blue Care Network
BCN Biblioteca del Congreso Nacional (Chile)
BCN Backbone Concentrator Node (routers, Nortel)
BCN Banco Central de Nicaragua
BCN Broadband Convergence Network
) strain (10% in PBS, pH 7.3) were used as positive control for the PCR analysis. The strain that infected the monkeys was isolated from sewage in Barcelona and is genetically similar to Indian strains (15). Viral suspensions were stored at -80[degrees]C.

Concentration of Viral Particles from Sewage Samples

Recovery of viral particles was carried out as described previously (16,17). Briefly, a 40-mL sewage sample was ultracentrifuged (110,000 x g for 1 h at 4[degrees]C) to pellet all viral particles together with any suspended material. The sediment was eluted by using 4 mL 0.25 N glycine glycine (glī`sēn), organic compound, one of the 20 amino acids commonly found in animal proteins. Glycine is the only one of these amino acids that is not optically active, i.e.  buffer, pH 9.5, and the suspended solids were separated by centrifugation at 12,000 x g for 15 min. Viruses were finally pelleted by using ultracentrifugation ultracentrifugation /ul·tra·cen·trif·u·ga·tion/ (ul?trah-sen-trif?u-ga´shun) subjection of material to an exceedingly high centrifugal force, which will separate and sediment the molecules of a substance.  (110,000 x g for 1 h at 4[degrees]C), resuspended in 0.1 mL PBS, and stored at -80[degrees]C.

Concentration of Viral Particles from Swine Feces Samples

A protocol similar to the one used for sewage samples was carried out to concentrate viral particles from swine feces samples; 1 g of a pool of feces was eluted in 4 mL 0.25 N glycine buffer, pH 9.5, and centrifuged (10,000 x g for 15 min) to separate suspended solids. The supernatant supernatant /su·per·na·tant/ (-na´tant) the liquid lying above a layer of precipitated insoluble material.

supernatant

the liquid lying above a layer of precipitated insoluble material.
 was finally ultracentrifuged (110,000 x g for 1 h at 4[degrees]C), and viruses were resuspended in 0.1 mL PBS and stored at -80[degrees]C.

Nucleic Acid nucleic acid, any of a group of organic substances found in the chromosomes of living cells and viruses that play a central role in the storage and replication of hereditary information and in the expression of this information through protein synthesis.  Extraction

Viral nucleic acids Nucleic acids
The cellular molecules DNA and RNA that act as coded instructions for the production of proteins and are copied for transmission of inherited traits.
 from viral particles were extracted as described previously (18) after we selected the procedure that is more likely to eliminate potential inhibitors of reverse transcription reverse transcription
n.
The process by which DNA is synthesized from an RNA template.
 (RT)-PCR. The method is based on the use of guanidinium isothiocyanate isothiocyanate

see allyl isothiocyanate.
 and adsorption adsorption, adhesion of the molecules of liquids, gases, and dissolved substances to the surfaces of solids, as opposed to absorption, in which the molecules actually enter the absorbing medium (see adhesion and cohesion).  of the nucleic acids to silica particles. Briefly, 50 [micro]L of viral concentrate was added to a mixture of 50 [micro]L of silica particle suspension and 900 [micro]L of lysis buffer. The mixture was incubated at room temperature for 10 min and washed twice in 1 mL of washing buffer (12 g of guanidine guanidine /gua·ni·dine/ (gwah´ni-den) the compound NHdbondC(NH2)2, a strong base found in the urine as a result of protein metabolism and used in the laboratory as a protein denaturant.  thiocyanate thiocyanate /thio·cy·a·nate/ (-si´ah-nat) a salt analogous in composition to a cyanate, but containing sulfur instead of oxygen.  in 10 mL of Tris-EDTA), twice more in 70% ethanol, and once in acetone acetone (ăs`ĭtōn), dimethyl ketone (dīmĕth`əl kē`tōn), or 2-propanone (prō`pənōn), CH3COCH3 . The pellet obtained after the complete evaporation of acetone was resuspended with 50 [micro]L of elution elution /elu·tion/ (e-loo´shun) in chemistry, separation of material by washing; the process of pulverizing substances and mixing them with water in order to separate the heavier constituents, which settle out in solution, from the  buffer (49.4 [micro]L of dithiothreitol [DTT DTT Deloitte Touche Tohmatsu (Deloitte & Touch Global Operations)
DTT Dithiothreitol (cytology reagent)
DTT Digital Terrestrial Television
DTT Discrete Trial Training
] and 0.6 [micro]L of RNase inhibitor [Applied Biosystems, Foster City, CA]). The extracted nucleic acids were then used for cDNA synthesis and amplification of the HEV and HAV genomes.

Enzymatic Amplification

To detect viral RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
, we used a seminested RT-PCR RT-PCR

reverse transcriptase-polymerase chain reaction. See PCR1.
 with degenerated primers as described (19). Five [micro]L of the extracted nucleic acids and a 10-fold dilution (corresponding to 5 [micro]L and 0.5 [micro]L of serum, 50 mg and 5 mg of feces, and 2 mL and 0.2 mL of sewage) were analyzed by RT-PCR, plus 1.5 mM of Mg[Cl.sub.2], PCR Gold Buffer (10 mM Tris-HC1, pH 8.3, 50 mM KCl) (Applied Biosystems), 0.01 M DTT, 10 nmol of each dNTP, and 25 pmol of the reverse primer (HEVORF2con-al; nt 6454-6479 in HEV United States [US 1] strain) in a total volume of 10 [micro]L. The mixture was incubated at 95[degrees]C for 5 min before the addition of 10 U of ribonuclease inhibitor (Applied Biosystems) and 50 U of RT mouse mammary mammary /mam·ma·ry/ (mam´ah-re) pertaining to the mammary gland, or breast.

mam·ma·ry
adj.
Of or relating to a breast or mamma.



mammary

pertaining to the mammary gland.
 leukemia virus (Applied Biosystems). After 30 min at 42[degrees]C, the mixture was heated again at 95[degrees]C for 5 min.

For a typical one-step reaction, we used 10 [micro]L of the cDNA solution. Amplification was carried out in a 50-[micro]L reaction mixture containing PCR Gold Buffer (Applied Biosystems), 1.2 mM Mg[Cl.sub.2], 2 U of Ampli Taq Gold (Applied Biosystems) 25 pmol of the forward primer (HEVORF2con-s1; nt 6283-6306 in the HEV US1 strain). The first cycle of denaturation denaturation, term used to describe the loss of native, higher-order structure of protein molecules in solution. Most globular proteins exhibit complicated three-dimensional folding described as secondary, tertiary, and quarternary structures.  was carried out for 5 min at 95[degrees]C, followed by 35 cycles at 94[degrees]C for 60 s, annealing annealing (ənēl`ĭng), process in which glass, metals, and other materials are treated to render them less brittle and more workable.  at 55[degrees]C for 30 s, and extension at 72[degrees]C for 1 min. All amplifications were completed with a 10min, 72[degrees]C extension period. For a second PCR amplification cycle, we added 1 [micro]L of the first-round product to a new batch of 50-[micro]L reaction mixture containing 25 pmol of each primer (HEVORF2con-a1 and HEVORF2con-s2; nt 6332-6353 in US1 strain). This second PCR was performed under the same conditions. The products were analyzed by agarose gel electrophoresis Agarose gel electrophoresis is a method used in biochemistry and molecular biology to separate DNA, RNA, or protein molecules by size. This is achieved by moving negatively charged nucleic acid molecules through an agarose matrix with an electric field (electrophoresis).  with ethidium bromide stain. A region of 148 nucleotides within open reading frame (ORF) 2 of the HEV genome was amplified. Also, assays for the amplification of a region of 287 nucleotides within ORF1 were carried out. Primers used were HEVORF1con-s1 (nt 2-25), HEVORF1con-s2 (nt 50-70), HEVORF1con-a1 (nt 397-419), and HEVORF1con-a2 (nt 313-336). The primer positions are relative to HEV US1 strain. Nested RT-PCR was carried out for detecting HAV genome in sewage samples as described (14), amplifying fragments within the 5' nontranslated region (NTR NTR Normal Trade Relations (international economic term; Most Favored Nation, MFN)
NTR Nitro (Nintendo DS codename)
NTR National Trauma Registry (Canada)
NTR Non-Traditional Revenue
) region and the VP1/A2 junction region.

Quality Control of the Amplification Method

Standard precautions were used for all procedures to reduce the possibility of sample contamination by amplified DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 molecules. A negative control was added every two samples. Virus-positive amplification results were confirmed by sequencing.

Sequencing and Analysis of the Viral Genome

The amplicons obtained after the nested PCR were purified by using the QIAquick PCR purification Kit (QIAGEN GmbH, Inc., Hilden, Germany), following the manufacturer's instructions. Both strands of the purified DNA amplicons were sequenced with the ABI Abi (ā`bī) [short for Abijah], in the Bible, King Hezekiah's mother.


(Application Binary Interface) A specification for a specific hardware platform combined with the operating system.
 PRISM BigDye Terminator Cycle Sequencing Ready Reaction kit with Ampli Taq DNA polymerase DNA polymerase /DNA po·lym·er·ase/ (pah-lim´er-as) any of various enzymes catalyzing the template-directed incorporation of deoxyribonucleotides into a DNA chain, particularly one using a DNA template.  FS (Applied Biosystems), following the manufacturer's instructions. We checked results using the ABI PRISM 3700 DNA analyzer (Applied Biosystems). We compared the sequences with those present in GenBank and the European Molecular Biology Library by using the basic BLAST program of the National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health. The NCBI is located in Bethesda, Maryland and was founded in 1988.  (available from: URL URL
 in full Uniform Resource Locator

Address of a resource on the Internet. The resource can be any type of file stored on a server, such as a Web page, a text file, a graphics file, or an application program.
: http://www.ncbi.nlm.nih.gov/BLAST/). GenBank accession numbers of the HEV strains sequences characterized previously and used for phylogenetic phy·lo·ge·net·ic
adj.
1. Of or relating to phylogeny or phylogenetics.

2. Relating to or based on evolutionary development or history.
 studies are listed in Table 1.

Alignments of the sequences were carried out by using the Clusta1X 1.8 program (available from: ftp://ftp-igbmc.u-strasbg.fr/pub/Clusta1X/). Phylograms were generated by the UPGMA UPGMA Unweighted Pair Group Method, Arithmetic Mean  algorithm using the NEIGHBOR program. The robustness of the grouping was determined by bootstrap See boot.

(operating system, compiler) bootstrap - To load and initialise the operating system on a computer. Normally abbreviated to "boot". From the curious expression "to pull oneself up by one's bootstraps", one of the legendary feats of Baron von Munchhausen.
 resampling of the multiple sequence alignments (1,000 sets) with the programs SEQBOOT, DNADIST, NEIGHBOR, and CONSENSE. The output graphics of the trees were created with the TREEVIEW package, version 1.5 (20).

Results

Sewage Samples

Forty-six sewage samples from Barcelona were collected from 1994 to 2002. Of the samples collected before 2001, a total of 4 (14.8%) of 27 tested positive for HEV RNA; this proportion increased to 84.2% (16/19) among the samples collected from 2001 to 2002 (Table 2). After performing sequence analysis of the amplified region within ORF2, we identified 15 new HEV isolates (BCN2-BCN16) (GenBank accession nos. in Table 1).

HAV RNA was detected in 21 (77.8%) of 27 sewage samples that were collected in Barcelona from 1994 to 2000 and tested for the presence of HAV. Previous studies in the same area showed 31 (57.4%) of 54 sewage samples positive for HAV from 1994 to 2000 (14).

We also tested for the presence of HEV RNA in sewage samples from other countries where HEV was previously considered nonendemic. One of five samples from Washington, D.C., and one of four samples tested from Nancy, France, were positive, showing two new HEV strains (W1 and N1). HEV RNA was not detected in any of the four samples from Umea, Sweden, or the five samples from Patras, Greece. HAV RNA was detected in all four countries: All U.S. sewage samples, three of four samples from France, one of five samples from Greece, and one of four from Sweden tested positive for HAV.

Human Serum Samples

Follow-up serum samples from 13 seropositive seropositive /se·ro·pos·i·tive/ (-poz´i-tiv) showing positive results on serological examination; showing a high level of antibody.

se·ro·pos·i·tive
adj.
 acute hepatitis patients from Barcelona were analyzed to evaluate the durability of antibody response. None of these samples showed the RNA of the virus. IgG anti-HEV was undetectable in 7 (53.8%) of 13 of these follow-up samples. Seven of eight seropositive patients were found to be seronegative seronegative /se·ro·neg·a·tive/ (-neg´ah-tiv) showing negative results on serological examination; showing a lack of antibody.

se·ro·neg·a·tive
adj.
 2 to 12 years after the initial test.

Animal Samples

Swine serum and fecal samples from pigs in three different herds in Catalonia, Spain, were tested. A total of 10 (13.7%) of 73 serum samples were positive for anti-HEV IgG antibodies (all were obtained from fattening pigs or the oldest pigs from the same herd). A total of 55 serum samples from pigs of different ages were taken at this farm. The distribution of seropositive animals was as follows: 4 (40.0%) of 10 samples from fattening pigs, 2 (40.0%) of 5 from gilts, 1 (33.3%) of 3 from primiparous pri·mip·a·ra  
n. pl. pri·mip·a·ras or pri·mip·a·rae
1. A woman who is pregnant for the first time.

2. A woman who has given birth to only one child.
 sows, and 3 (42.8%) of 7 from multiparous mul·tip·a·rous
adj.
1. Relating to a multipara.

2. Giving birth to more than one offspring at a time.
 sows. Pigs from the other two farms were seronegative for HEV. None of the serum samples were positive for HEV by RT-PCR.

The HEV genome was amplified by RT-PCR in 6 of 12 fecal samples collected in the herd with seropositive animals. We detected HEV in one of the two pools from pigs 3 weeks old, in one of two pools from pigs 5 weeks old, in two of two pools from pigs 8 weeks old, in one of two pools from fattening pigs, and in the pool of feces from primiparous sows. After sequence analysis, we identified one new swine HEV strain (Por1).

Sequence Analysis of the HEV RNA Genomes

Phylogenetic analysis showed that all the sequences detected were grouped with strains isolated in countries where HEV Was considered nonendemic (Figure 1). The nucleotide sequence alignment of the detected strains with other HEV strains is shown in Figure 2. BCN2-9, BCN11-BCN14, and BCN16 shared a 91.0% to 99.2% similarity. They were closely related to VH1 (94.3% to 98.4% identity) and VH2 (91.0% to 95.1%), two strains isolated from clinical samples in the same area (Barcelona), previously described (15), and G1 (92.7% to 96.7%), an isolate from Greece. Two isolates (BCN10 and BCN15) showed substantially different sequences, sharing 86.5% to 89.2% and 87.2% to 91.9% similarity with the rest of strains detected in Barcelona. A previous study (15) in the same area with specific primers for HEV strains from areas where the virus is endemic identified one isolate (BCN), which was closely related to Indian strains. Nucleotide sequence identities among this isolate and the new ones from Barcelona ranged from 79.7% to 83.7%.

[FIGURE 1 OMITTED]

The HEV strain identified in sewage from Washington (W1) was closely related to other isolates from the United States, sharing 91.0% to 91.9% identity with US1 and US2 strains obtained from human serum samples, and 98.4% with a swine strain (Sw) also isolated in the United States. BCN15, from Barcelona, was also similar to those isolates from the United States, showing 89.4% to 91.9% nucleotide sequence identity. The sample from Nancy (N1) was highly similar (92.7%) to VH1. All HAV strains were genotype IA, except the Swedish isolate (IB).

The nucleotide sequences of the isolates from swine were identical and, when compared with other isolates, the Por1 strain exhibited a similarity of 92.7% with G2 and 87.0% to 91.0% with isolates from sewage in Barcelona. The results of translating nucleotide sequences into amino acid sequences showed that the substitutions in strains detected in Barcelona (including the one from pigs) were mainly located in the third codon codon: see nucleic acid.  position and were conservative (Figure 3). Two strains (BCN9 arid BCN 14) showed two nonconservative substitutions in the same position.

[FIGURE 3 OMITTED]

Discussion

In previous studies, investigating the viruses present in a population's sewage has produced reliable information about the strains infecting that population; this type of analysis detects the viruses that cause clinical and subclinical infections in the population (14). In our study, we showed the presence of HEV strains during a period of several years in raw urban sewage from an area previously considered nonendemic for the virus. We also demonstrated the presence of HEV in other industrialized countries by testing urban sewage samples from diverse geographic areas. We identified 17 new HEV strains from sewage samples in Barcelona, Spain (15 isolates); Washington, D.C., United States (1 isolate); and Nancy, France (1 isolate); these locations also produced a high percentage of HAV-positive sewage samples.

The amplified region of the viral genomes detected in this study was sequenced; the diversity we observed indicates the absence of a unique HEV outbreak in the population and shows that a diverse number of strains are simultaneously circulating. Only the viral genomes from the samples showing the higher viral concentration (Por1 and W1) could be sequenced in ORF1 by using the described primers. Y. Wang et al. (21) noted that negative results were observed in serum samples positive in the ORF2 when using these ORF1 primers, suggesting a lower level of efficiency in the amplification reactions compared with the ORF2 primers applied in the study. The phylogenetic analysis of short sequences has previously produced trees similar in structure to those observed with longer sequences (21,22). The strains we describe may be most closely related to genotype III, one of the four genotypes described by G.G. Schlauder and I.K. Mushahwar (8). Larger fragments should be sequenced in order to confirm these results.

The prevalence of HAV infection in Catalonia, where most of the sewage samples were collected, is 67.8% (23); in this area, HAV is considered to be of intermediate endemicity. In the same area of Barcelona, 57.4% of the sewage samples collected from 1994 to 2000 showed HAV; these HAV strains were found to be closely related to the HAV strains identified in the clinical samples for the same period (14).

HEV can be detected in the stool of most patients infected with HEV, with duration of fecal shedding generally limited to 9-12 days (24). If we compare the transmission of HEV and HAV in this region, since the time after infection that HEV is excreted does not appear to be longer than the time after infection that HAV is excreted, we find that HEV infections may be more frequent than previously considered. That 84.2% of sewage samples collected during 2001 and 2002 were HEV positive suggests that the prevalence of HEV infections may be underestimated.

In our study we also analyzed samples from three commercial pig farms; only one of these farms had pigs positive for HEV. However, from that one farm, antibodies and virus were detected in animals of different ages, suggesting that HEV is widespread among animals in infected herds. Our serologic se·rol·o·gy  
n. pl. se·rol·o·gies
1. The science that deals with the properties and reactions of serums, especially blood serum.

2.
 results showed that although only 13.7% of samples were positive, all of them were from animals > 10 weeks (fattening pigs and sows). Since that farm worked with a farrow-to-finish system, these results may indicate a slow diffusion of infection within the farm. The fact that adult sows had positive serologic and virologic test results suggests their possible role as reservoirs on the farm. The swine HEV strain identified in these animals has been found to be related to the human strains detected (87.0% to 91.0%). Previous studies also reported that swine HEV isolates identified in the United States (9), Taiwan (11), and Japan (10) were closely related to human HEV isolates obtained from the same geographic areas. In fact, swine HEV isolates seem to be more similar to human HEV isolates from the same area than they are to swine HEV isolates from different geographic areas (25). Swine HEV isolates identified in Canada and the Netherlands have been clustered with previously described European and American human or swine isolates (26,27). Finally, veterinarians and persons working with pigs have been shown to at a greater risk for HEV infection. Meng et al. (28) reported that swine veterinarians were one and a half times more likely to seroconvert to HEV infection, although clearly multiple sources of exposure can exist.

Most existing assays for antibody to HEV are enzyme immunoassays that use recombinant-expressed proteins or synthetic peptides representing antigenic domains from ORF 2 and ORF 3, commonly from strains of at least two geographically distinct HEV strains. The HEV strains used in these tests are representative of those from countries with endemic HEV and show some differences from recently identified strains in the sequence of amino acids of several major epitopes as the region near the carboxyl carboxyl /car·box·yl/ (kahr-bok´sil) the monovalent radical —COOH, occurring in those organic acids termed carboxylic acids.

car·box·yl
n.
 ends of ORF 2 and ORF 3. Some differences are shown in amino acid sequences of strains from areas with nonendemic and endemic virus in the amplified region, which is located within a strongly reactive epitope epitope: see immunity.  (29). This diversity could be producing a lower level of sensitivity in the serologic assays for these infections. A recent study from the Hepatitis E Virus Antibody Serum Panel Evaluation Group concluded that discrepant dis·crep·ant  
adj.
Marked by discrepancy; disagreeing.



[Middle English discrepaunt, from Latin discrep
 results among blood donor serum samples show that anti-HEV seroprevalence data in countries with nonendemic HEV may be unreliable and should be interpreted with caution (30). Our results also support this conclusion. As some authors have suggested (31), we show that IgG antibodies a few years after the initial test are reduced to undetectable levels in 53.8% of cases. In some cases, antibody levels are reduced very early, after only 3-4 months, which makes the diagnosis of HEV infection extremely difficult. Several authors have suggested that some persons may not produce a detectable antibody response at all (24). Balayan (3) also considered the prevalence of anti-HEV in areas endemic for HEV to be much lower than expected, with a rate of 2.8% to 20.2% in areas having a high proportion of HAV-seropositive persons. In highly industrialized countries, anti-HEV has been regularly found at a rate not exceeding 5%; in Spain, anti-HEV was found in 1% to 3% of blood donors (32).

Specific information on the pathogenicity of the HEV strains detected in Europe and the United States is not available; these data are required for evaluating the potential risk associated with the infection. Using adequate specific tests must be considered for the routine diagnosis of HEV infections in patients with acute viral hepatitis not related to HAV in industrialized countries, especially in asymptomatic patients with unexplained elevated aminotransferase aminotransferase /ami·no·trans·fer·ase/ (-trans´fer-as) transaminase.

a·mi·no·trans·fer·ase
n.
 levels and in pregnant women. Our data suggest that HEV strains are more widespread in the human population than previously thought and endemic HEV infections are likely present in Europe and the United States. More studies are warranted to characterize the HEV infections detected and evaluate the sanitary risk that the excreted HEV represents for humans.
Table 1. Nucleotide sequence accession numbers for Hepatitis E virus
strains

Origin                            Abbreviation   GenBank accession no.

Described in previous studies
Barcelona                             BCN              AF058684
Greece                                G1               AF110391
                                      G2               AF110392
Italy                                 It               AF110390
Austria                               Au               AF279123
United States                         US1              AF060668
                                      US2              AF060669
                                      Sw (a)           AF082843
Mexico                                M                M74506
Pakistan                              P                M80581
Burma                                 B                M73218
China                                 C1               D11092
                                      C2               AJ272108
                                      C3               AF082094
India                                 I                X98292
Reported in this study
Barcelona                             BCN2             AF491004
                                      BCN3             AF490985
                                      BCN4             AF491003
                                   BCN5-BCN16     AF490986-AF490997
Washington, D.C., United States       W1               AF490998
Nancy, France                         N1               AF490999
Barcelona, Spain (b)                  VH1              AF491000
                                      VH2              AF491001
Catalonia, Spain (a)                  Porl             AF491002

(a) Originated from swine.

(b) Strains reported previously (15), but their sequences within open
reading frame 2 used for phylogenetic analysis in this study are new.

Table 2. Summary of results of HEV and HAV found in urban sewage
samples

                                                    Positive HEV
                                                    samples/total
Site                    Period of sampling            analyzed

Barcelona, Spain        October-November 1994              0/2
                        May-June 1995                      0/2
                        February-April 1996                1/2
                        September-October 1997             0/3
                        January 1998                       0/1
                        March-April 1999                   1/2
                        June-December 2000                 2/15
                        January 2001-January 2002         16/19
Total (for Barcelona)                               20/46 (43.5%) (b)
Nancy, France           March 1998                         1/4
Umea, Sweden            September-October 1997             0/4
Patras, Greece          June-July 1999                     0/5
Washington, D.C.,
  United States         December 1999                      1/5

                             Positive HAM
Site                    samples/total analyzed

Barcelona, Spain                 1/2
                                 1/2
                                 1/2
                                 2/3
                                 1/1
                                 2/2
                                13/15
                                 NT
Total (for Barcelona)     21/27 (77.8%) (b)
Nancy, France                    3/4
Umea, Sweden                     1/4
Patras, Greece                   1/4
Washington, D.C.,
  United States                  5/5

(a) HEV, Hepatitis E virus; HAV, Hepatitis A virus; NT, not tested.

(b) % of positive samples.


Acknowledgments

We thank Serveis Cientifico-Tecnics for their help in the sequencing of the polymerase chain reaction products; Rosa Bufias for providing excellent technical assistance; and S.U. Emerson and R.H. Purcell for their useful advice and for providing the control sera used in the enzyme-linked immunosorbent assay enzyme-linked immunosorbent assay
n.
ELISA.


Enzyme-linked immunosorbent assay (ELISA)
A diagnostic blood test used to screen patients for AIDS or other viruses.
.

This work was supported by the Ministerio de Sanidad y Consumo of the Spanish Government, project FIS FIS n abbr (BRIT) (= Family Income Supplement) → ayuda estatal familiar  00/1123. Pilar Pilar

strong-minded female leader of a group of guerrillas in the Spanish Civil War. [Am. Lit.: Hemingway For Whom the Bell Tolls]

See : Female Power


Pilar
 Clemente-Casares and Silvia Bofill-Mas are fellows of the Generalitat de Catalunya The Generalitat de Catalunya ("Government of Catalonia" [1]) is the institution under which the Spanish autonomous community of Catalonia is politically organised. .

All material published in Emerging Infectious Diseases is in the public domain and may be used and reprinted without special permission; proper citation, however, is appreciated.

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WHM White Mage (Final Fantasy, gaming)
WHM White Marlin (FAO fish species code)
WHM Wireless Host Module
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Address for correspondence: Rosina Girones, Department of Microbiology, Faculty of Biology, University of Barcelona The University of Barcelona (Catalan: Universitat de Barcelona, UB) is a public university located in the city of Barcelona, Catalonia, Spain. It is a member of the Coimbra Group and Joan Lluís Vives Institute. , Avd. Diagonal 645, 08028 Barcelona, Spain; fax: 34-93-4110592; email: rgirones@ub.edu

Pilar Clemente-Casares, * Sonia Pina, * Maria Buti, ([dagger]) Rosend Jardi, ([dagger]) Margarita Martin, ([double dagger]) Silvia Bofill-Mas, * and Rosina Girones *

* University of Barcelona, Barcelona, Spain; ([dagger]) Hospital General Universitario Valle Hebron, Barcelona, Spain; and ([double dagger]) Universitat Autonoma de Barcelona, Barcelona, Spain

Ms. Clemente-Casares is a doctoral student at the University of Barcelona. She is working on the detection of human virus by molecular methods in clinical and environmental samples focused on the study of the epidemiology of Hepatitis E and Hepatitis A viruses.
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Author:Girones, Rosina
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