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Helicos BioSciences Awarded 'Revolutionary Genome Sequencing Technologies - The $1000 Genome' Grant.


Recognition by National Human Genome The human genome is the genome of Homo sapiens, which is composed of 24 distinct pairs of chromosomes (22 autosomal + X + Y) with a total of approximately 3 billion DNA base pairs containing an estimated 20,000–25,000 genes.  Institute to Accelerate Research of Helicos Single Molecule Sequencing Technology

CAMBRIDGE, Mass. -- Helicos BioSciences, a pioneer in high-speed, high-sensitivity sequencing, today announced that it has received a $2 Million grant from the National Human Genome Research Institute (NHGRI NHGRI National Human Genome Research Institute ) as part of the Institute's "Revolutionary Genome Sequencing Technologies - The $1000 Genome" research program. The grant will fund research of Helicos' proprietary single molecule sequencing technology (tSMS[TM]) for ultra low cost resequencing applications and de novo [Latin, Anew.] A second time; afresh. A trial or a hearing that is ordered by an appellate court that has reviewed the record of a hearing in a lower court and sent the matter back to the original court for a new trial, as if it had not been previously heard nor decided.  sequencing of large genomes. The funds will accelerate Helicos' efforts to revolutionize medicine by enabling the sequencing and characterization of genomes across thousands of samples.

"We are pleased that the NHGRI sees the value of the Helicos approach to deliver the promise of the $1000 genome", said Stan Lapidus, Helicos' President and CEO (1) (Chief Executive Officer) The highest individual in command of an organization. Typically the president of the company, the CEO reports to the Chairman of the Board. . "This grant allows us to accelerate our research efforts, which we believe will produce unprecedented sequencing performance on a platform that is easily scalable to large experiments including the sequencing of whole genomes. Experiments which involve extensive coverage of the genome and require hundreds or thousands of samples to achieve significant results are simply not possible today. These important experiments, such as elucidating the full range of DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 alterations in cancer, define a "No Man's Land" in genomics. We believe our tSMS[TM] technology will enable investigators to navigate this nascent space."

Knowledge of the human genome has grown dramatically since its sequence was determined earlier this decade. Once thought to be composed mainly of 'junk DNA', recent research depicts the human genome to be far more complex. The majority of the genome is now thought be functionally active and a large portion of the genome is thought to have multiple functions. Armed with this knowledge researchers want to design much bigger experiments across large populations of cohorts, patients and compounds to understand the biology of regulation. Today researchers are challenged by the limits of existing technologies.

The award will last three years and will focus on the development of novel methods of the tSMS(TM) assay. Specifically, the research will target producing sequencing data with very high accuracy at unprecedented low cost. These methods have broad applicability to the life sciences, from comparative genomics Comparative genomics is the study of relationships between the genomes of different species or strains. Comparative genomics is an attempt to take advantage of the information provided by the signatures of selection to understand the function and evolutionary processes that act on  across species to the detailed study of human variation to elucidating the sequence of economically useful organisms. A key focus of the Helicos grant will be on the development of methods that enable the full characterization of cancer genomes.

About tSMS(TM)

tSMS(TM) is a technique that enables researchers to rapidly and accurately sequence individual molecules of DNA and RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
. This allows direct interrogation interrogation

In criminal law, process of formally and systematically questioning a suspect in order to elicit incriminating responses. The process is largely outside the governance of law, though in the U.S.
 of the single molecule as opposed to an amplified population of molecules. tSMS(TM) holds enormous potential for elucidating the gamut of genetic aberrations in oncology, through the ability to serve as a universal detection system across a wide variety of applications for both DNA and RNA.

Examples of some of the applications tSMS(TM) will enable are whole tumor resequencing, quantitative transcriptional profiling, genome wide methylation methylation,
n a phase-II detoxification pathway in the liver; methyl groups combine with toxins to rid the body of various substances.

methylation
(meth´
 studies, and candidate region resequencing.

The advantages of tSMS(TM) over amplified molecule sequencing include: no PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
 bias, no errors introduced by amplification, and no dephasing issues commonly present in amplified molecule sequencing. In addition, tSMS(TM) promises the highest possible throughput and enables reagent cost savings on the order of 1,000 times less than Sanger sequencing.

About Helicos BioSciences

Helicos BioSciences Corporation began operations in February 2004, and has raised $67 million from a top-tier investment consortium to date. Helicos is developing instruments and reagents for the high-speed sequencing of DNA and RNA with the highest possible sensitivity. The Helicos technology, based on pioneering research of Dr. Stephen Quake of Stanford University Stanford University, at Stanford, Calif.; coeducational; chartered 1885, opened 1891 as Leland Stanford Junior Univ. (still the legal name). The original campus was designed by Frederick Law Olmsted. David Starr Jordan was its first president. , is covered by a broad portfolio of granted and filed patents. The company commenced early-access collaborations in 2006 to generate ground breaking scientific publications and start creating revenue, while planning to launch its first commercial systems in 2007.
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Date:Oct 4, 2006
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