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Estimating foodborne gastroenteritis, Australia.


We estimated for Australia the number of cases, hospitalizations, and deaths due to foodborne gastroenteritis gastroenteritis: see enteritis.
gastroenteritis

Acute infectious syndrome of the stomach lining and intestines. Symptoms include diarrhea, vomiting, and abdominal cramps.
 in a typical year, circa circa
prep. Abbr. ca
In approximately; about.
 2000. The total amount of infectious gastroenteritis was measured by using a national telephone survey. The foodborne proportion was estimated from Australian data on each of 16 pathogens. To account for uncertainty, we used simulation techniques to calculate 95% credibility intervals (Crl). The estimate of incidence of gastroenteritis in Australia is 17.2 million (95% confidence interval confidence interval,
n a statistical device used to determine the range within which an acceptable datum would fall. Confidence intervals are usually expressed in percentages, typically 95% or 99%.
 14.5-19.9 million) cases per year. We estimate that 32% (95% Crl 24%-40%) are foodborne, which equals 0.3 (95% Crl 0.2-0.4) episodes per person, or 5.4 million (95% Crl 4.0-6.9 million) cases annually in Australia. Norovirus, enteropathogenic enteropathogenic

having pathogenicity for the intestine.


enteropathogenic Escherichia coli
strains of E. coli which cause enteritis by close association with enteric cells. Includes attaching and effacing E. coli.
 Escherichia coli Escherichia coli (ĕsh'ərĭk`ēə kō`lī), common bacterium that normally inhabits the intestinal tracts of humans and animals, but can cause infection in other parts of the body, especially the urinary tract. , Campylobacter Campylobacter

Genus of gram-negative spiral-shaped bacteria infecting mammals. Many species, especially C. fetus, cause miscarriage in sheep and cattle. C. jejuni is a common cause of food poisoning. Sources include meats (particularly chicken) and unpasteurized milk.
 spp., and Salmonella salmonella

Any of the rod-shaped, gram-negative, non-oxygen-requiring bacteria that make up the genus Salmonella. Their main habitat is the intestinal tract of humans and other animals.
 spp. cause the most illnesses. In addition, foodborne gastroenteritis causes [approximately equal to] 15,000 (95% Crl 11,000-18,000) hospitalizations and 80 (95% Crl 40-120) deaths annually. This study highlights global public health concerns about foodborne diseases and the need for standardized standardized

pertaining to data that have been submitted to standardization procedures.


standardized morbidity rate
see morbidity rate.

standardized mortality rate
see mortality rate.
 methods, including assessment of uncertainty, for international comparison.

**********

The pattern of foodborne disease has changed substantially in industrialized in·dus·tri·al·ize  
v. in·dus·tri·al·ized, in·dus·tri·al·iz·ing, in·dus·tri·al·iz·es

v.tr.
1. To develop industry in (a country or society, for example).

2.
 countries in recent decades. Outbreaks are more likely to be far reaching, and some are even global in scale because of widespread food distribution and changes in methods of food preparation (1). Further changes in the incidence of foodborne disease and the pattern of food-related illness can be anticipated from global warming global warming, the gradual increase of the temperature of the earth's lower atmosphere as a result of the increase in greenhouse gases since the Industrial Revolution.  (2). As a result of changed conditions in food production and better laboratory detection techniques, new foodborne pathogens foodborne pathogen Public health A pathogen–especially bacteria, for which the 'vector' is itself a food. See Airline food.  continue to be identified (3). In particular, we are now faced with the emergence of antimicrobial antimicrobial /an·ti·mi·cro·bi·al/ (-mi-kro´be-al)
1. killing microorganisms or suppressing their multiplication or growth.

2. an agent with such effects.
 drug-resistant bacteria and a number of viruses not previously recognized (4,5).

Foodborne disease is a public health concern in all parts of the world. In the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. , foodborne disease causes an estimated 76 million illnesses, 325,000 hospitalizations, and 5,000 deaths each year (6). In the United Kingdom, an estimated 2.37 million cases of foodborne gastroenteritis occurred in 1995 (7). Previous estimates of foodborne gastroenteritis in Australia have ranged from 1-2 million (8) to 4 million episodes per year (9). The effect of such large numbers of persons with gastrointestinal illness is considerable. A recent national survey of gastroenteritis in Australia found that one third of working adults miss [greater than or equal to] 1 days of work when they have gastroenteritis, and another third of cases result in a caregiver missing work (10). In Australia in 2003, 99 reported outbreaks of foodborne disease affected 1,686 people and caused 6 deaths (11). Any evidence of food contamination can also have a major effect on food industry and trade. The food industry in Australia generates >$29 billion in food production, with >20% of products exported, and $57 billion in food processing Food processing is the set of methods and techniques used to transform raw ingredients into food for consumption by humans or animals. The food processing industry utilises these processes.  (12).

Transmission of Pathogens Causing Gastroenteritis

Infectious gastroenteritis is caused by many pathogens, each with unique characteristics requiring different laboratory tests for identification. Transmission of pathogens to humans may occur from contaminated contaminated,
v 1. made radioactive by the addition of small quantities of radioactive material.
2. made contaminated by adding infective or radiographic materials.
3. an infective surface or object.
 foods or water, or from infected persons, environments, or animals. Some pathogens that cause gastroenteritis, such as Bacillus cereus Bacillus ce·re·us
n.
A species of Bacillus that causes an emetic type and a diarrheal type of food poisoning in humans.
, are always thought to be the result of contaminated food, whereas others, such as rotavirus rotavirus /ro·ta·vi·rus/ (ro´tah-vi?rus) any member of the genus Rotavirus. ro´taviral
Rotavirus /Ro·ta·vi·rus/ (ro´tah-vi?rus 
, are largely transmitted by nonfoodborne routes. Most enteric enteric /en·ter·ic/ (en-ter´ik) within or pertaining to the small intestine.

en·ter·ic
adj.
1. Of, relating to, or within the intestine.

2.
 pathogens have multiple modes of transmission (13).

Many clinical cases of gastroenteritis are assessed as "presumed infectious" and do not have a pathogen Pathogen

Any agent capable of causing disease. The term pathogen is usually restricted to living agents, which include viruses, rickettsia, bacteria, fungi, yeasts, protozoa, helminths, and certain insect larval stages.
 isolated, even when a stool sample is tested (14). These include cases in which a known pathogen is present but is not identified and cases in which the pathogen is totally unknown (15). Numerous pathogens that were unknown only a few decades ago are now considered commonplace, including Campylobacter spp., Shiga toxin Shiga toxins are a family of related toxins with two major groups, Stx1 and Stx2, whose genes are considered to be part of the genome of lambdoid prophages.[1] The toxins are named for Kiyoshi Shiga, who first described the bacterial origin of dysentery caused by  producing Escherichia coli, and norovirus (16). More unknown pathogens are likely to be major causes of illness, some of which will become apparent with time and investigation.

Estimating the Level of Foodborne Gastroenteritis

As part of the activities of OzFoodNet, the foodborne disease surveillance network operating in Australia since 2000, we undertook a study to estimate the amount of foodborne gastroenteritis in contemporary Australia. In the absence of an internationally agreed-upon methodology, the approach used in the United States provided the best method for obtaining internationally comparable estimates (6). Two components are required to estimate the extent of foodborne gastroenteritis by this method: 1) the total amount of gastroenteritis in the country and 2) the proportion of gastroenteritis that is foodborne. The product of these 2 estimates gives the total number of cases of foodborne gastroenteritis.

Uncertainty is inherent in data used in such calculations. Variability may be quantified by statistical concepts like standard error and confidence intervals, but other components of uncertainty are due to paucity pau·ci·ty  
n.
1. Smallness of number; fewness.

2. Scarcity; dearth: a paucity of natural resources.
 of data. Since some information is always available, however, we can quantify each component of uncertainty by a plausible probability distribution Probability distribution

A function that describes all the values a random variable can take and the probability associated with each. Also called a probability function.


probability distribution 
 using all relevant information available. We can then use simulations of these distributions to generate an interval that contains the credible estimates of the number of foodborne cases of gastroenteritis. These interval estimates are akin to credibility intervals used in Bayesian inferences Bayesian inference is statistical inference in which evidence or observations are used to update or to newly infer the probability that a hypothesis may be true. The name "Bayesian" comes from the frequent use of Bayes' theorem in the inference process. .

Our objective for this study was to use Australian data to calculate the number of cases, hospitalizations, and deaths due to foodborne gastroenteritis in Australia in a typical year, around the year 2000, accounting for uncertainty in the estimate.

Methods

The calculations to estimate incidence, hospitalizations, and deaths are described below and in the Figure. Details of the data sources and the simulation technique used to account for uncertainty are shown in the online Appendix (available from http://www.cdc.gov/ncidod/EID/vol11 no08/04-1367_app.htm).

[FIGURE OMITTED]

We considered the definition of foodborne to include any infectious gastroenteritis caused by eating food, including food contaminated just before eating. The proportion of infectious gastroenteritis cases that are due to foodborne transmission in the community and their proportion among hospitalizations and deaths, were assessed by using data from multiple Australian sources about individual known pathogens.

Gastroenteritis caused by known pathogens was studied to estimate the proportion of all infectious gastroenteritis that is foodborne. Of 25 pathogens with the potential for foodborne transmission, 16 (those listed in Table 1) were considered relevant. Pathogens not considered relevant were either not foodborne (Clostridium difficile Clostridium difficile A common cause of bacterial colitis; it is the causative agent in 99% of pseudomembranous colitis, and 20-30% of antibiotic-associated diarrhea ), did not cause gastroenteritis (Brucella Brucella /Bru·cel·la/ (broo-sel´ah) a genus of schizomycetes (family Brucellaceae). B. abor´tus causes infectious abortion in cattle and is the most common cause of brucellosis in humans. B.  spp., Listeria Listeria /Lis·te·ria/ (lis-ter´e-ah) a genus of gram-negative bacteria (family Corynebacterium); L. monocyto´genes causes listeriosis.

Lis·te·ri·a
n.
 spp., Toxoplasma gondii Tox·o·plas·ma gon·di·i
n.
A sporozoan species that is an intracellular parasite in a variety of vertebrates and is the causative agent of toxoplasmosis.
, hepatitis A virus Noun 1. hepatitis A virus - the virus causing hepatitis A
enterovirus - any of a group of picornaviruses that infect the gastrointestinal tract and can spread to other areas (especially the nervous system)
), or were only acquired overseas (Salmonella Typhi Salmonella ty·phi
n.
Typhoid bacillus.
, Vibrio cholerae Vibrio chol·er·ae
n.
A bacterium that causes Asiatic cholera in humans; Koch's bacillus.


Vibrio cholerae Infectious disease The Vibrio
, Cyclospora cayetanensis Cyclospora cayetanensis Parasitology A Cryptosporidium-like coccidian protozoan, family Eimeriidae, which is implicated in episodic traveler's diarrhea; it infects the GI tract of immunocompetent and immunocompromised hosts–especially with AIDS. , Trichinella spiralis Trichinella spiralis Parasitology A globally distributed nematode that causes trichinosis, which is found in carnivore and omnivore muscle after ingestion of larvae in undercooked meat–especially bear and pig meats Morphology 1. ).

For each of the 16 pathogens, yearly estimates were made of the total number of cases of gastroenteritis in the community; this number was based on data collected in the National Notifiable Diseases The following is a list of notifiable diseases arranged by country. Australia
Source:[1]
  • Acquired Immunodeficiency Syndrome (AIDS)
  • Anthrax
  • Arbovirus infections:
 Surveillance System, published results from the Water Quality Study conducted in Melbourne in 1998 (17,18), laboratory data, or outbreak data. Necessary adjustments were made for underreporting in the Australian surveillance system, incomplete population coverage, and the proportion of infections acquired overseas (online Appendix). We also estimated, for each of the pathogens, the total number of hospitalizations and deaths based on data from the National Hospital Morbidity Database (NHMD) as well as the proportion of cases due to foodborne transmission, which was estimated from outbreak data, the literature, and because Australian data were lacking, a Delphi process involving 10 foodborne disease experts in Australia. The number of foodborne episodes for each pathogen was then obtained by multiplying the estimate of the foodborne proportion by the estimate of the total number of cases, hospitalizations, and deaths. The overall proportion of infectious gastroenteritis in the community due to foodborne transmission was then estimated by dividing the sum of the foodborne cases due to the 16 known pathogens by the sum of all cases due to the 16 known pathogens (Figure). The equivalent calculation was also done for hospital admissions due to known pathogens to give the proportion of hospitalizations for infectious gastroenteritis due to foodborne transmission.

We assumed that the proportion of gastroenteritis that is foodborne is the same among cases caused by known pathogens as among those caused by unknown pathogens. Adjustments were made for the proportion estimated as acquired overseas for certain pathogens (online Appendix).

Incidence of Foodborne Gastroenteritis

The total amount of infectious gastroenteritis in Australia in 1 year was estimated from the National Gastroenteritis Survey 2001-2002. This computer-assisted telephone survey ran during 12 months from September 2001 to August 2002 in all states and territories of Australia The states and territories of Australia make up the Commonwealth of Australia under a federal system of government.

States and territories of Australia
States


State Abbreviation Capital
. Ethics clearance was obtained from the Australian Department of Health and Ageing Health and Ageing is a research programme set up by the Geneva Association, also known as the International Association for the Study of Insurance Economics. The Geneva Association Research Programme on Health and Ageing seeks to bring together facts, figures and analyses  Ethics Committee ethics committee A multidisciplinary hospital body composed of a broad spectrum of personnel–eg, physicians, nurses, social workers, priests, and others, which addresses the moral and ethical issues within the hospital. See DNR, Institutional review board.  and from other state health departments and university committees. Random digit dialing Random digit dialing (RDD) is a method for selecting people for involvement in telephone statistical surveys by generating telephone numbers at random. Random digit dialing has the advantage that it includes unlisted numbers that would be missed if the numbers were selected from a  was used to select households, and then the person with the most recent birthday was selected as the respondent. The response rate was 67%, and the final sample was 6,087 persons. Data were collected on symptoms of gastroenteritis in the previous 4 weeks. The case definition excluded persons who identified a noninfectious cause for their symptoms, and an adjustment was made for persons with gastrointestinal symptoms secondary to a respiratory infection Noun 1. respiratory infection - any infection of the respiratory tract
respiratory tract infection

infection - the pathological state resulting from the invasion of the body by pathogenic microorganisms
 (19). The case definition was [greater than or equal to] 3 loose stools or [greater than or equal to] 2 episodes of vomiting vomiting, ejection of food and other matter from the stomach through the mouth, often preceded by nausea. The process is initiated by stimulation of the vomiting center of the brain by nerve impulses from the gastrointestinal tract or other part of the body.  or, if respiratory symptoms were present, [greater than or equal to] 4 loose stools or [greater than or equal to] 3 episodes of vomiting in a 24-hour period in the previous 4 weeks.

The final estimate of the total number of cases of foodborne gastroenteritis in the community is the product of the proportion foodborne and the total number of cases of infectious gastroenteritis. The incidence per person per year was estimated by using population data from the Australian Bureau of Statistics The Australian Bureau of Statistics (ABS) is the Australian government agency that collects and publishes statistical information about Australia and its people. Population and Housing
The agency undertakes the Australian Census of Population and Housing.
 (20).

Hospitalizations for Foodborne Gastroenteritis

The total number of hospitalizations for gastroenteritis was estimated from the National Hospital Morbidity Database (21), which records all admissions to hospital in Australia. Data from 1993/1994 to 1998/1999 were examined for International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM ICD-9-CM International Classification of Disease, 9th edition, Clinical Modification
A standardized classification of disease, injuries, and causes of death, by etiology and anatomic localization and codified into a 6-digit number, which allows
) codes for gastroenteritis as either a principal diagnosis of as any of a further 9 additional diagnoses. Additional diagnoses refer to cases in which gastroenteritis was a contributing factor to, but not the only reason for, admission. These data were used to estimate the average number of diagnoses per year for each of 14 of the known pathogens. No ICD ICD International Classification of Diseases (of the World Health Organization); intrauterine contraceptive device.

ICD
abbr.
 code for Aeromonas infection was in the hospital separation dataset, and hospitalizations due to E. coli E. coli: see Escherichia coli.
E. coli
 in full Escherichia coli

Species of bacterium that inhabits the stomach and intestines. E. coli can be transmitted by water, milk, food, or flies and other insects.
 infections did not distinguish between enteropathogenic and Shiga toxin producing types, leading to a study of 14 rather than 16 known pathogens in hospital data. Diagnoses coded "gastroenteritis, presumed infectious" were also examined. Adjustments were not made for underreporting of individual pathogens, since any missed diagnoses for specific pathogens should be included in this unknown category.

The final estimate of the total number of hospitalizations due to foodborne gastroenteritis was the product of the proportion of hospitalizations among known pathogens that is foodborne and the total number of hospitalizations for infectious gastroenteritis (including cases of unknown but presumed infectious causes).

Deaths Due to Foodborne Gastroenteritis

Deaths in the hospital were determined for gastroenteritis as either a principal diagnosis of as any of a further 9 additional diagnoses (data from 1993/1994 to 1998/1999). The final estimate of the total number of deaths due to foodborne gastroenteritis was the product of the proportion foodborne and the total number of deaths in the hospital due to infectious gastroenteritis.

Accounting for Uncertainty in Data

Where suitable data were available, 95% confidence intervals (CI) were calculated. Otherwise, uncertainty in the data was accounted for by using simulation techniques. Plausible probability distributions Many probability distributions are so important in theory or applications that they have been given specific names. Discrete distributions
With finite support
  • The Bernoulli distribution, which takes value 1 with probability p
 were generated by using all available information, and the interval between 2.5th and 97.5th percentiles gave the 95% credible interval In Bayesian statistics, a credible interval is a posterior probability interval, used for purposes similar to those of confidence intervals in frequentist statistics.

For example, a statement such as
 (95% CrI). The median was taken as the point estimate. This technique is explained in the online Appendix. Calculations were carried out with the Statistical Package for the Social Sciences (statistics, tool) Statistical Package for the Social Sciences - (SPSS) The flagship program of SPSS, Inc., written in the late 1960s.

["SPSS X User's Guide", SPSS, Inc. 1986].
, version 11.50 (SPSS A statistical package from SPSS, Inc., Chicago (www.spss.com) that runs on PCs, most mainframes and minis and is used extensively in marketing research. It provides over 50 statistical processes, including regression analysis, correlation and analysis of variance.  Inc., Chicago, IL, USA).

Results

Incidence

The case definition applied to 450 (7%) of 6,087 respondents to the National Gastroenteritis Survey. When weighted to the Australian population by age and sex, this number extrapolated to 17.2 million (95% CI 14.5-19.9 million) cases of gastroenteritis in Australia in 1 year, or 0.92 (95% CI 0.77-1.06) cases per person per year (13). This number includes all causes of infectious gastroenteritis.

Among the 16 known pathogens were an estimated 4.6 million (95% CrI 3.8 5.5 million) cases of gastroenteritis due to all modes of transmission. Of these, an estimated 1.6 million (95% CrI 1.2 2.1 million) were due to bacterial infections, 2.3 million (95% CrI 1.7-2.8 million) were due to viral infections viral infection,
n an infection by a pathogenic virus. A virus acts on the cell nucleus, taking over the genetic material within the nucleus and replicating itself.
, and 0.70 million (95% CrI 0.44-0.97 million) were due to parasites (Table 1).

Among known pathogens, 1.5 million (95% CrI 1.0-1.9 million) cases were acquired through food. Enteropathogenic E. coli, noroviruses, Campylobacter spp., and Salmonella spp. accounted for 88% of all foodborne disease in this group of pathogens (Table 1). The proportion of gastroenteritis due to foodborne transmission was estimated at 32% (95% CrI 24-40%). The product of the total number of cases of gastroenteritis (17.2 million; 95% CrI 14.5-19.9 million) multiplied by the proportion that was foodborne (0.32, 95% CrI 0.24-0.40) produced an estimate of 5.4 million cases of foodborne gastroenteritis in 1 year in Australia (circa 2002), with a 95% CrI of 4.0-6.9 million cases.

Hospitalizations

Among hospitalizations for gastroenteritis due to the 14 known pathogens were 10,070 (95% CrI 8,630-11,470) diagnoses of gastroenteritis; an estimated 3,640 (95% CrI 2,600-4,670) of these cases were due to eating contaminated food. The overall proportion of hospitalizations estimated to be from foodborne gastroenteritis was 0.36 (95% CrI 0.30-0.41) (Table 2).

The total number of hospital diagnoses for gastroenteritis was estimated as 41,000 (95% CrI 33,000-49,000). The number due to foodborne transmission was 14,700 (95% CrI 11,400 18,000) (Table 3).

Deaths

The NHMD 1993/1994 to 1998/1999 showed 1,302 deaths (157 311 per year) in patients with a code for a principal or additional diagnosis of infectious gastroenteritis in the 6 years. The average was 217 (standard deviation In statistics, the average amount a number varies from the average number in a series of numbers.

(statistics) standard deviation - (SD) A measure of the range of values in a set of numbers.
 51) per year. Of these 1,302 deaths, 287 occurred in patients with a principal diagnosis of infectious gastroenteritis. Application of the proportion of hospital diagnoses due to foodborne gastroenteritis (36%, 95% CrI 30%-41%) to the number of deaths in which the diagnosis included infectious gastroenteritis (217, 95% CrI 120-320) provided an estimate of 76 (95% CrI 41-120) deaths due to foodborne gastroenteritis each year (Table 3).

Discussion

The estimates from this study demonstrate the considerable prevalence of foodborne disease in contemporary Australia and justify the attention given to foodborne disease surveillance and food safety. The uncertainty estimates indicate that even the lower boundary of the credible interval is still high, with at least 4 million cases of foodborne gastroenteritis, and possibly as many as 7 million per year. This means that on average, every Australian can expect to experience an episode of foodborne illness A foodborne illness (also foodborne disease) is any illness resulting from the consumption of food. Although foodborne illness is commonly called food poisoning, this is often a misnomer.  about every 3 to 4 years. Hospitalizations are uncommon at 8 per 10,000 people each year, and [approximately equal to] 4 deaths per million persons occur per year.

Similar studies have been done in United States (6) and the United Kingdom (7). The Australian estimate of incidence is remarkably similar to that reported for the United States, but higher than in the United Kingdom. In the United States, 36% of all gastroenteritis was estimated to be due to foodborne transmission, and incidence was estimated at 0.28 cases per person per year. In the United Kingdom, 26% of gastroenteritis was estimated to be due to foodborne transmission, and incidence was estimated at 0.04 cases per person per year in 1995. The importance of using a standardized method when comparing results of the amount of foodborne gastroenteritis across countries or times cannot be overemphasized. Evidence suggests that a prospective cohort study A cohort study is a form of longitudinal study used in medicine and social science. It is one type of study design.

In medicine, it is usually undertaken to obtain evidence to try to refute the existence of a suspected association between cause and disease; failure to refute
 design may produce a lower incidence of community gastroenteritis than a cross-sectional design. The UK study included a quality control substudy to compare the incidence based on a retrospective recall method with incidence from a prospective diary method; the estimates of incidence were 0.6 and 0.2 cases per person per year, respectively (14). Prospective studies that require participants to supply a stool sample every time they report gastroenteritis might tend to cause an underestimate because of unwillingness to provide a sample; on the other hand, in a retrospective recall method, respondents might "telescope" events into a shorter time frame. A prospective study done in the Netherlands (22) also found a lower incidence than that seen in the United Kingdom. Other variations in methods also exist across countries, such as differences in surveillance systems and the quality of outbreak data available to estimate the proportion of cases that are foodborne. Not only may the study design influence the final estimate, but also the definition of gastroenteritis. Even a seemingly small difference in the definition of gastroenteritis can lead to a considerable difference in the final estimates (23).

The definition of community gastroenteritis used in this Australian study refers to moderate-to-severe illness, with at [greater than or equal to] 3 loose stools or [greater than or equal to] 2 episodes of vomiting in a single day. To improve the specificity of our definition for enteric illness, we excluded patients with concomitant concomitant /con·com·i·tant/ (kon-kom´i-tant) accompanying; accessory; joined with another.
concomitant adjective Accompanying, accessory, joined with another
 respiratory symptoms unless they had more severe symptoms of diarrhea or vomiting. Previous studies have found similarly high rates of respiratory symptoms amongst cases of gastroenteritis (24). A definition inclusive of inclusive of
prep.
Taking into consideration or account; including.
 milder illness would lead to a higher estimate of foodborne gastroenteritis, and a definition that included only more severe illness would lead to a lower estimate.

We also took account of those with concurrent respiratory symptoms in our definition of community gastroenteritis, although most studies estimating the amount of gastroenteritis have not considered this. The United States study (6) adjusted for those with respiratory illness Noun 1. respiratory illness - a disease affecting the respiratory system
respiratory disease, respiratory disorder

adult respiratory distress syndrome, ARDS, wet lung, white lung - acute lung injury characterized by coughing and rales; inflammation of the
 by excluding a proportion of case-patients who were thought likely to have symptoms secondary to respiratory infections rather than a primary enteric infection. The UK definition of gastroenteritis was different from the Australian definition in several ways. While differing arguments can be raised about the best definition of gastroenteritis, the main concern is to have a consistent, reasonable definition for comparative purposes.

Of the 5.4 million (95% CrI 4.0 6.9 million) cases of foodborne gastroenteritis, 28% were attributed to known pathogens. This finding compares with 18% in the United States (6) and 41% in the United Kingdom (7). The Australian data used to estimate the pathogen-specific numbers of community cases of gastroenteritis were variable in quality. Salmonella notifications have been relatively stable over the last 5 years, and characteristics of this illness are fairly well understood. In comparison, reports of illness due to Campylobacter have increased steadily during the same time (25). This finding could be due to reporting artifacts artifacts

see specimen artifacts.
 or increasing infection rates in the community. The diagnostic laboratory tests have not changed appreciably ap·pre·cia·ble  
adj.
Possible to estimate, measure, or perceive: appreciable changes in temperature. See Synonyms at perceptible.
 during this time.

The pathogen-specific estimates in this study that most influenced the final estimate of the proportion of gastroenteritis that is foodborne were those for norovirus and enteropathogenic E. coli, as these accounted for the largest numbers. The estimates for both were determined from a high-quality longitudinal study longitudinal study

a chronological study in epidemiology which attempts to establish a relationship between an antecedent cause and a subsequent effect. See also cohort study.
 (17). Nevertheless, the sample was limited to a specific subpopulation sub·pop·u·la·tion  
n.
A part or subdivision of a population, especially one originating from some other population: microbial subpopulations.

Noun 1.
 and geographic location. The high proportion of E. coli is similar to findings in the United Kingdom, although we estimated that 50% of cases caused by this pathogen were foodborne compared to 8% of cases in the UK assessment (7) and 30% in the United States (6). In recent years, the Years, The

the seven decades of Eleanor Pargiter’s life. [Br. Lit.: Benét, 1109]

See : Time
 capacity of laboratories to identify noroviruses with polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  tests has improved considerably, and this virus is likely to become increasingly recognized (26).

Factors were used to adjust for underreporting when using data from outbreaks and surveillance. Further studies are needed to give more robust estimates of the level of underreporting compared with the true level in the community. The estimates of the proportion of illness due to foodborne transmission for specific pathogens relied largely on outbreak data and opinions of foodborne diseases experts. Outbreak data can be very sensitive to the outcomes from larger events, which could bias the estimate of the proportion foodborne in either direction (27). Foodborne disease experts' experience was based on pathogen characteristics in the laboratory, results of outbreak investigations, and knowledge from case-control studies case-control study,
n an investigation employing an epidemiologic approach in which previously existing incidents of a medical condition are used in lieu of gathering new information from a randomized population.
 of sporadic infections. For pathogens estimated to have a large number of cases, such as norovirus, the estimate of the proportion thought to be foodborne can influence the final estimate. Both the UK and Australian estimates were based on outbreak data, but only 11% of Norwalk-like virus Norwalk-like virus Virology Any of a group of viruses with biologic, clinical, and immunologic findings similar to those of the Norwalk agent(s). see Gastroenteritis, Hawaii agent, Norwalk agent(s), Otofuke virus, Snow Mountain virus  (caliciviruses) gastroenteritis was ascribed to foodborne transmission in the UK study, compared with 40% in the United States, and 25% in Australia (6,7). These individual estimates had some influence on the final estimates of the proportion of all gastroenteritis that is foodborne.

Hospital data in Australia are fairly complete, and only a few hospitals, mostly private, have not contributed records of all admissions to the national database in the last decade (21). Coding of admissions varies over time and place, but a patient with gastroenteritis is likely to be coded for this condition in the first 10 diagnoses (28). Approximately two thirds of diagnoses were coded as the main reason for admission. Additional diagnoses may represent cases with complications or comorbidity that took precedence in the order of coding or cases acquired in the hospital. Some deaths due to gastroenteritis may have occurred in nursing homes, which were not included. Among the known pathogens, bacterial infections accounted for >90% of hospital admissions in Australia, which is similar to the proportion in the United Kingdom (7) but higher than the 60% estimated in the United States (6). Campylobacteriosis followed by salmonellosis salmonellosis (săl'mənĕlō`sĭs), any of a group of infectious diseases caused by intestinal bacteria of the genus Salmonella,  accounted for most admissions due to bacterial infections in Australia and the United Kingdom; in the United States this order was reversed. These illnesses are important when considering the severe end of the spectrum of foodborne gastroenteritis.

We used the best available Australian data to conduct this study, but as experienced by others conducting research overseas, the quality of the data inevitably varied. Since the quality of the data cannot be easily improved, we chose to provide estimates that reflect the true state of uncertainty of the data by using a simulation technique that can be easily applied. Taking account of uncertainty informs the data users, including policy makers, that a very precise estimate is not possible. An appreciation of the degree of confidence that can be placed in an estimate is an important part of the responsible presentation of results that may have considerable effects at a policy level. With these stipulations, we are confident that the level of foodborne gastroenteritis is high in Australia. In the future, improvements in data completeness and quality would enhance the robustness of the calculations, but estimates of uncertainty are likely to remain an important component of the results.
Table 1. GE due to known pathogens in Australia in a
typical year circa 2000 *

                                      Median no.
Pathogen                          GE cases (95% CrI)

Bacteria
  Aeromonas spp.                39,400 (31,700-47,200)
  Bacillus cereus                  6,900 (0-16,000)
  Campylobacter spp.           277,000 (89,800-463,000)
  Clostridium perfringens         43,000 (440-86,000)
  STEC                              3,000 (0-6,500)
  non-STEC E. coli           1,152,000 (797,000-1,507,000)
  Salmonella spp.               92,000 (26,000-158,000)
  Shigella slop.                    3,200 (0-6,900)
  Staphylococcus aureus            14,100 (0-29,800)
  Vibrio parahaemolyticus           1,080 (0-2,600)
  Yersinia spp.                     2,200 (0-4,500)
  Total bacteria            1,639,000 (1,175,000-2,103,000)
Viruses
  Norovirus                 1,832,000 (1,361,000-2,302,000)
  Rotavirus                    241,000 (98,000-384,000)
  Astrovirus/adenovirus        190,000 (63,000-316,000)
  Total viruses             2,280,000 (1,740,000-2,820,000)
Parasites
  Cryptosporidium parvum       271,000 (255,000-287,000)
  Giardia lamblia              430,000 (232,000-628,000)
  Total parasites              704,000 (442,000-966,000)
Total                       4,640,000 (3,750,000-5,510,000)

                             Median proportion
Pathogen                    foodborne (95% CrI)

Bacteria
  Aeromonas spp.             0.25 (0.12-0.38)
  Bacillus cereus              1 (1.00-1.00)
  Campylobacter spp.         0.75 (0.67-0.83)
  Clostridium perfringens      1 (1.00-1.00)
  STEC                       0.65 (0.48-0.82)
  non-STEC E. coli            0.5 (0.32-0.68)
  Salmonella spp.            0.87 (0.81-0.93)
  Shigella slop.              0.1 (0.04-0.16)
  Staphylococcus aureus        1 (1.00-1.00)
  Vibrio parahaemolyticus    0.71 (0.54-0.88)
  Yersinia spp.               0.75 0.63-0.87)
  Total bacteria             0.58 (0.44-0.72)
Viruses
  Norovirus                  0.25 (0.12-0.38)
  Rotavirus                  0.02 (0.01-0.03)
  Astrovirus/adenovirus       0.1 (0.02-0.18)
  Total viruses              0.21 (0.11-0.31)
Parasites
  Cryptosporidium parvum      0.1 (0.02-0.18)
  Giardia lamblia            0.05 (0.01-0.09)
  Total parasites            0.14 (0.04-0.24)
Total                        0.32 (0.24-0.40)

                                      Median no.
Pathogen                          foodborne (95% CrI)

Bacteria
  Aeromonas spp.                 9,800 (4,100-15,400)
  Bacillus cereus                  6,900 (0-15,800)
  Campylobacter spp.           208,000 (67,000-350,000)
  Clostridium perfringens         43,000 (400-86,000)
  STEC                              1,900 (0-4,200)
  non-STEC E. coli             563,000 (295,000-831,000)
  Salmonella spp.               81,000 (23,000-138,000)
  Shigella slop.                      300(0-700)
  Staphylococcus aureus            14,200 (0-29,800)
  Vibrio parahaemolyticus            740 (0-1,850)
  Yersinia spp.                     1,620 (0-3,400)
  Total bacteria              950,000 (590,000-1,310,000)
Viruses
  Norovirus                    446,000 (193,000-700,000)
  Rotavirus                        4,700 (700-8,600)
  Astrovirus/adenovirus            17,500 (0-36,800)
  Total viruses                470,000 (210,000-730,000)
Parasites
  Cryptosporidium parvum           25,000 (0-54,000)
  Giardia lamblia                  20,400 (0-41,100)
  Total parasites               66,000 (18,000-114,000)
Total                       1,480,000 (1,030,000-1,920,000)

* GE, gastroenteritis; CrI, credibility interval; STEC, Shiga
toxin-producing Escherichia coli.

Table 2. Estimated hospital diagnoses of gastroenteritis due to
foodborne pathogens in Australia, circa 2000 *

                                            No. hospital diagnoses
                              ICD-9-CM        per year (95% Crl)
Agent                           code              ([dagger])

Bacteria                                     4,960 (3,360-6,310)
  Aeromonas spp.                 NA                   NA
  Bacillus cereus              008.59              29(0-66)
  Campylobacter spp.           008.43        3,140 (1,754-4,546)
  Clostridium perfringens       005.2              1 (0-3)
  Escherichia coli            008.00-04          102 (53-154)
  Salmonella spp.                003         1,330 (1,130-1,530)
    (nontyphoidal)
  Shigella spp.                  004            320 (270-370)
  Staphylococcus aureus         005.0             21 (17-25)
  Vibrio parahaemolyticus       005.4              4 (2-6)
  Yersinia enterocolitica      008.44             34 (24-44)
Viruses                                      3,940 (3,740-4,140)
  Astrovirus/adenovirus     008.62/008.66       190 (130-250)
  Norovirus                    008.63             17 (2-32)
  Rotavirus                    008.61        3,740 (3,540-3,920)
Parasites                                     1,160 (950-1,390)
  Cryptosporidium spp.          007.4            200 (0-400)
  Giardia lamblia               007.1         1,000 (900-1,100)
Total known ([section])                     10,070 (8,630-11,470)
Miscellaneous and unknown                   30,800 (22,700-38,400)
    agents
  Miscellaneous agents                       2,800 (2,400-3,200)
    (not listed above)
  Unknown (#)                               28,000 (20,000-35,700)
Total known and unknown                     41,000 (33,000-49,000)

                                              No. hospital diagnoses
                                                  from foodborne
                             % foodborne      transmission per year
Agent                         (95% Crl)     (95% Crl) ([double dagger])

Bacteria                     70 (65-75)         3,480 (2,440-4,500)
  Aeromonas spp.             25 (12-38)                 --
  Bacillus cereus                100                 29 (0-66)
  Campylobacter spp.         75 (67-83)         2,260 (1,250-3,300)
  Clostridium perfringens        100                  1 (0-3)
  Escherichia coli           50 (32-68)             50 (23-86)
  Salmonella spp.            87 (81-93)          1,060 (900-1,240)
    (nontyphoidal)
  Shigella spp.               10 (4-16)              19 (8-31)
  Staphylococcus aureus          100                21 (17-25)
  Vibrio parahaemolyticus    71 (54-88)               3 (1-5)
  Yersinia enterocolitica    75 (63-87)             25 (17-35)
Viruses                        2 (1-3)             100 (60-140)
  Astrovirus/adenovirus       10 (2-18)              19 (4-37)
  Norovirus                  25 (12-38)               4 (0-9)
  Rotavirus                    2 (1-3)              70 (40-110)
Parasites                      6 (2-9)              64 (19-116)
  Cryptosporidium spp.        10 (2-18)              14 (0-49)
  Giardia lamblia              5 (1-9)               49 (7-90)
Total known ([section])                         3,640 (2,600-4,670)
Miscellaneous and unknown    36 (30-41)        11,000 (8,000-14,000)
    agents                  ([paragraph])
  Miscellaneous agents                           1,000 (800-1,200)
    (not listed above)
  Unknown (#)                                 10,000 (6,800-13,200)
Total known and unknown      36 (30-41)       14,700 (11,400-18,000)

* ICD-9-CM, International Classification of Diseases, Ninth Revision,
Clinical Modification; Crl, credibility interval; NA, not applicable.

([dagger]) Includes principal and 9 additional diagnoses. Simulated
distribution based on raw yearly National Hospital Mortality Database
data 1993/1994-1998/1999.

([double dagger]) Adjusted for 1) proportion foodborne and
2) proportion overseas acquired.

([section]) 36% (95% Crl 30%-41 %) known pathogens foodborne
(not overseas acquired).

([paragraph]) Apply % foodborne in known pathogens.

(#) Includes codes 0051-3 and 8-9, 00849, 0085, 0088, 009,
00841-2, 00846-9, and 00869.

Table 3. Infectious and foodborne gastroenteritis in Australia
in a typical year circa 2000 *

                                                         Foodborne
                                   All causes          transmission
Measure                         estimate (95% Crl)   estimate (95% Crl)

No. cases per year               17.2 (14.5-19.9)      5.4 (4.0-6.9)
    (x [10.sup.6])
  Known pathogen                  4.6 (3.7-5.5)        1.5 (1.0-1.9)
Cases per person per year        0.92 (0.77-1.06)     0.29 (0.23-0.35)
No. hospital diagnoses per       40.9 (32.7-48.6)     14.7 (11.4-17.7)
    year (x [10.sup.3])
  Known pathogen                 10.1 (8.6-11.5)       3.6 (2.6-4.7)
Hospital diagnoses per 10,000      22 (17-26)             8 (6-9)
  persons per year
Deaths per year                   217 (120-320)         76 (40-120)
Deaths per 10,000 persons per    0.12 (0.06-0.17)     0.04 (0.02-0.06)
  year

* Crl. credibility interval.


Acknowledgments

We thank Edmond Hsu for assistance with statistics; Scott Cameron, Mark Veitch, Craig Dalton, and Rod Givney for assistance with the Delphi process to assess the pathogen-specific proportion of foodborne illness; Scott Cameron, Mark Veitch, and Tom Ross Tom Ross may refer to:
  • Tom Ross, BBC Television Producer (see Top Gear and Public Account)
  • Tom Ross, a hockey player
  • Thomas Hambly Ross, a Canadian politician
  • Tom Ross, an Irish cricketer
  • Tom Ross, a presenter on BRMB (a radio station in Birmingham, UK)
 for helpful comments on the manuscript; and the OzFoodNet Working Group, including Jane Raupach, Rosie Ashbolt, Jennie Musto, and Mohinder Sarna.

OzFoodNet and this project are funded by the Australian Government Department of Health and Ageing.

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Irish writer whose works, including The Lonely Girl (1962) and Johnny I Hardly Knew You (1977), explore the lives of women in modern-day Ireland.

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Gillian Hall, * Martyn D. Kirk, ([dagger]) Niels Becker, * Joy E. Gregory, ([double dagger double dagger
n.
A reference mark () used in printing and writing. Also called diesis.

Noun 1.
]) Leanne Unicomb, ([section]) Geoffrey Millard, ([paragraph]) Russell Stafford, (#) Karin Lalor, ([double dagger]) and the OzFoodNet Working Group

* Australian National University, Canberra, Australian Capital Territory Australian Capital Territory (1991 pop. 276,468), 939 sq mi (2,432 sq km), SE Australia, an enclave within New South Wales, containing Canberra, capital of Australia. It was called the Federal Capital Territory until 1938.  (ACT), Australia; ([dagger]) OzFoodNet, Canberra, ACT, Australia; ([double dagger]) Department of Human Services, Melbourne, Victoria, Australia; ([section]) Hunter Population Health Unit, Wallsend, New South Wales Wallsend is a western suburb of Newcastle, New South Wales, Australia, located 11 kilometres (7 mi) from Newcastle's central business district. It is part of the City of Newcastle local government area. , Australia; ([paragraph]) ACT Analytical Laboratory, Weston Creek Weston Creek is a district of Canberra, Australian Capital Territory, Australia which lies west of the Woden Valley district. Belconnen and Tuggeranong lie to the north and southeast respectively. , ACT, Australia; and (#) Queensland Health, Archerfield, Queensland Archerfield is an outer suburb of Brisbane, Australia. It is 13 km south of the CBD.

Archerfield is a sparsely populated suburb, with most of the land being occupied by Archerfield Airport.
, Australia

Dr. Hall is a lecturer in the Master of Applied Epidemiology program at Australian National University. She has interests in foodborne disease and nutrition, climate change, and indigenous health.

Address for correspondence: Gillian Hall, National Centre for Epidemiology and Population Health, Australian National University, Australian Capital Territory 0200, Australia; fax: 61-2-6125-0740; email: gillian.hall@anu.edu.au
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