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Epidemic and nonepidemic multidrug-resistant Enterococcus faecium.


The epidemiology of vancomycin-resistant Enterococcus vancomycin-resistant enterococcus Infectious disease An enterococcus, primarily Enterococcus faecium, resistant to most antibiotics, including aminoglycosides and vancomycin, once a 'last-resort' agent; VRE is primarily nosocomial, in long  faecium (VREF VREF Voltage Reference
VREF Reference Voltage
VREF Vancomycin-Resistant Enterococcus Faecium (antibiotic-resistant bacteria)
VREF Reference Landing Speed (aviation)
VREF Vertical Refresh
) in Europe is characterized by a large community reservoir. In contrast, nosocomial nosocomial /noso·co·mi·al/ (nos?o-ko´me-il) pertaining to or originating in a hospital.

nos·o·co·mi·al
adj.
1. Of or relating to a hospital.

2.
 outbreaks and infections (without a community reservoir) characterize VREF in the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. . Previous studies demonstrated host-specific genogroups and a distinct genetic lineage of VREF associated with hospital outbreaks, characterized by the variant esp-gene and a specific allele-type of the purK housekeeping gene (purK1). We investigated the genetic relatedness of vanA VREF (n=108) and vancomycin-susceptible E. faecium (VSEF VSEF Vancouver Social Enterprise Forum (Canada) ) (n=92) from different epidemiologic sources by genotyping Genotyping refers to the process of determining the genotype of an individual with a biological assay. Current methods of doing this include PCR, DNA sequencing, and hybridization to DNA microarrays or beads. , susceptibility testing for ampicillin ampicillin (ăm'pĭsĭl`ĭn), a penicillin-type antibiotic that is effective against both gram-negative microorganisms and gram-positive microorganisms such as Escherichia coli. , sequencing of purK1, and testing for presence of esp. Clusters of VSEF fit well into previously described VREF genogroups, and strong associations were found between VSEF and VREF isolates with resistance to ampicillin, presence of esp, and purK1. Genotypes characterized by presence of esp, purK1, and ampicillin resistance were most frequent among outbreak-associated isolates and almost absent among community surveillance isolates. Vancomycin-resistance was not specifically linked to genogroups. VREF and VSEF from different epidemiologic sources are genetically related; evidence exists for nosocomial selection of a subtype (programming) subtype - If S is a subtype of T then an expression of type S may be used anywhere that one of type T can and an implicit type conversion will be applied to convert it to type T.  of E. faecium, which has acquired vancomycin-resistance through horizontal transfer.

Enterococcus faecium Enterococcus faecium A nosocomial pathogen resistant to most antibiotics–eg, penicillin, teicoplanin, aminoglycosides, glycopeptides; ID of E faecium in a clinical specimen requires Pt isolation with barrier precautions.  has become an important nosocomial pathogen Pathogen

Any agent capable of causing disease. The term pathogen is usually restricted to living agents, which include viruses, rickettsia, bacteria, fungi, yeasts, protozoa, helminths, and certain insect larval stages.
, especially in immunocompromised immunocompromised /im·mu·no·com·pro·mised/ (-kom´pro-mizd) having the immune response attenuated by administration of immunosuppressive drugs, by irradiation, by malnutrition, or by certain disease processes (e.g., cancer).  patients, creating serious limitations in treatment options because of cumulative resistance to antimicrobial agents Antimicrobial agents

Chemical compounds biosynthetically or synthetically produced which either destroy or usefully suppress the growth or metabolism of a variety of microscopic or submicroscopic forms of life.
 (1). In the United States, the emergence of nosocomial E. faecium infections was characterized by increasing resistance to ampicillin in the 1980s and a rapid increase of vancomycin vancomycin (văn'kōmī`sĭn), antibiotic resembling penicillin in the way it acts. It is derived from the bacterium Streptomyces orientalis, which was isolated from soil of India and Indonesia.  resistance in the next decade (1,2). The emergence of vancomycin-resistant E. faecium (VREF) in the United States illustrates the transmission capacities of bacteria and the possibility of a postantibiotic era for nosocomial infections Nosocomial infections
Infections that were not present before the patient came to a hospital, but were acquired by a patient while in the hospital.

Mentioned in: Enterobacterial Infections, Staphylococcal Infections
 in critically ill patients.

The global epidemiology of VREF is not well understood. In the United States, prevalences of colonization and infection are high among hospitalized patients, but a community reservoir of VREF in healthy persons or animals seems to be absent (3,4). In contrast, in Europe, colonization and infection rates within hospitals remain low, although colonization among healthy persons and animals is prevalent (5-10).

Previous studies suggested host-specificity of VREF genogroups (11), and isolates associated with nosocomial outbreaks seemed to be genetically distinct from nonepidemic VREF isolated from humans and animals (12). The differences between epidemic and nonepidemic isolates were based on genetic relatedness, as determined by amplified fragment length polymorphism Amplified fragment length polymorphism PCR, or "AFLP-PCR" (often AFLP), is a tool used in the study of genetics and in the practice of genetic engineering.

Amplified Fragment Length Polymorphism (AFLP
 analysis (AFLP), and the presence of an identical sequence of the purK housekeeping gene in epidemic strains (12). A recently developed multilocus sequence typing Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci. The procedure characterizes isolates of bacterial species using the DNA sequences of internal fragments of multiple (usually seven) housekeeping genes.  scheme for E. faecium confirmed that epidemic isolates belonged to a specific genetic lineage (13). Moreover, a variant of the esp gene, which has been found to be more prevalent among isolates of E. faecalis associated with infections (14), was found in all but one epidemic hospital-derived VREF isolate and not among community-derived VREF (12). Subsequently, other investigators described the variant esp gene in vancomycin-susceptible E. faecium (VSEF), and this gene appeared to be predominantly present among clinical isolates (15-18).These findings suggest the existence of a specific subpopulation sub·pop·u·la·tion  
n.
A part or subdivision of a population, especially one originating from some other population: microbial subpopulations.

Noun 1.
 of E. faecium, comprising both VREF as well as VSEF, associated with hospital outbreaks and infections.

In this study, we further investigated the genetic relationship between VREF and VSEF isolates, derived from different epidemiologic sources, such as hospital outbreaks, infections, and colonization among hospitalized patients and healthy persons. The genetic relatedness was linked to the presence of the variant esp gene and antibiotic resistance antibiotic resistance,
n the ability of certain strains of microorganisms to develop resistance to antibiotics.

antibiotic resistance 
 to ampicillin and vancomycin. On the basis of our findings, we constructed an evolutionary scheme describing the sequential steps in the development and selection of ampicillin- and vancomycin-resistant E. faecium strains.

Materials and Methods

Bacterial Strains and Growth Conditions

Isolates of VREF (n=108) were collected from nosocomial epidemics (n=16), clinical infections (n=20), clinical surveys (n=36), and community surveys (n=36) (Table 1). The genotypes of these isolates have been described previously (11,12). Strains were considered epidemic if they were isolated from patients treated in the same hospital, in the same ward and with an overlapping time-relationship, and if AFLP patterns showed at least 90% similarity (12). Epidemic isolates were recovered from clinical sites, blood and urine, as well as from feces. Only one representative isolate from each outbreak was used for analysis. The number of patients involved in each outbreak varied from 4 to >50 (12,19-23). Isolates were considered to be derived From a clinical infection if obtained from a clinical specimen, such as the blood, urine, and wounds. All surveillance isolates, from patients and healthy persons, were isolated from fecal fecal /fe·cal/ (fe´k'l) pertaining to or of the nature of feces.

fe·cal
adj.
Relating to or composed of feces.



fecal

pertaining to or of the nature of feces.
 samples. Surveillance isolates were either from the community or from clinical surveillance when obtained from hospitalized patients. The hospital-stay duration of these patients, when cultures were obtained, was not available.

Isolates of VSEF (n=92) were derived from clinical infections (n=73), clinical surveys (n=5), and community surveys (n=14). The isolates from clinical infectious sites were obtained from the SENTRY Antimicrobial antimicrobial /an·ti·mi·cro·bi·al/ (-mi-kro´be-al)
1. killing microorganisms or suppressing their multiplication or growth.

2. an agent with such effects.
 Surveillance Program, and originated from different hospitals in several European countries (Portugal, Germany, United Kingdom, France, Spain, Italy, Austria, Turkey, Switzerland, Greece, and Poland). Fifty-seven strains were blood isolates, 5 were isolated from urine, 8 from wounds, and 2 from respiratory tract respiratory tract
n.
The air passages from the nose to the pulmonary alveoli, including the pharynx, larynx, trachea, and bronchi.


Respiratory tract 
 specimens. Patient information was not available. All VSEF isolates derived from clinical surveys of fecal samples were from the University Hospital Maastricht. All VSEF isolates from community surveys of fecal samples were collected in the Netherlands. All bacterial isolates were collected during the 1990s.

Identification and Susceptibility Testing

Enterococci enterococci

bacteria in the genus Enterococcus.
 were identified to the species level and were tested for the presence of the vanA gene by using a multiplex See multiplexing.  PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
 described by Dutka-Malen et al. (24). Vancomycin and ampicillin/amoxicillin susceptibilities were determined by standard agar dilution methods, according to according to
prep.
1. As stated or indicated by; on the authority of: according to historians.

2. In keeping with: according to instructions.

3.
 the National Committee for Clinical Laboratory Standards (NCCLS NCCLS National Committee for Clinical Laboratory Standards ) guidelines (25). We considered MICs [greater than or equal to] 16 [micro]g/mL for ampicillin or amoxicillin amoxicillin /amox·i·cil·lin/ (ah-mok?si-sil´in) a semisynthetic derivative of ampicillin effective against a broad spectrum of gram-positive and gram-negative bacteria.

a·mox·i·cil·lin
n.
 and [greater than or equal to] 8 for vancomycin to be resistant.

Esp PCR

All strains were screened for esp by PCR, with two different primer sets (esp 11 [5'-TTGCTAATGCTAGTCCACGACC-3'] to esp 12 [5'-GCGTCAACACTTGCATTGCCGAA-3'] and 14F [5'-AGATTTCATCTTT GATTCTTGG-3'] to 12R [5'-AATTGATTCTTTAGC ATCTGG-3']). PCR conditions included an initial denaturation denaturation, term used to describe the loss of native, higher-order structure of protein molecules in solution. Most globular proteins exhibit complicated three-dimensional folding described as secondary, tertiary, and quarternary structures.  at 95[degrees]C for 15 min for activation of the HotStarTaq DNA polymerase DNA polymerase /DNA po·lym·er·ase/ (pah-lim´er-as) any of various enzymes catalyzing the template-directed incorporation of deoxyribonucleotides into a DNA chain, particularly one using a DNA template.  (QIAGEN GmbH, Hilden, Germany), followed by 30 cycles of 94[degrees]C for 30 sec, 52[degrees]C for 30 sec, and 72[degrees]C for 1 min, followed by an extension at 72[degrees]C for 7 min. Reactions were performed in 25 [micro]L by using the HotStarTaq Master Mix (QIAGEN GmbH). Strains negative in PCR were checked for the presence of the esp gene by Southern hybridization hybridization /hy·brid·iza·tion/ (hi?brid-i-za´shun)
1. crossbreeding; the act or process of producing hybrids.

2. molecular hybridization

3.
, as described previously (12). For this check, we generated an esp-specific probe (956 bp) using primers esp 11 and esp 12 (see previous explanation).

Sequencing PurK

The purK gene encodes a phosphoribosylaminoimidazole carboxylase Phosphoribosylaminoimidazole carboxylase is an enzyme involved in nucleotide synthesis. External links
  • MeSH phosphoribosylaminoimidazole+carboxylase


   
 ATPase subunit sub·u·nit  
n.
A subdivision of a larger unit.

Noun 1. subunit - a monetary unit that is valued at a fraction (usually one hundredth) of the basic monetary unit
fractional monetary unit
 involved in purine biosynthesis Biosynthesis

The synthesis of more complex molecules from simpler ones in cells by a series of reactions mediated by enzymes. The overall economy and survival of the cell is governed by the interplay between the energy gained from the breakdown of compounds
 and is one of the seven housekeeping genes selected for multilocus sequence typing of E. faecium (13). A 492-bp fragment of the purK gene of a selection of strains, divided over all genogroups, was sequenced by using primers 5'-GCAGATTGGCACATTGAAAGT-3' and 5'-TACATAAATCCCGCCTGTTTC/T-3'. PCR conditions included an initial denaturation at 95[degrees]C for 3 min, followed by 35 cycles of 94[degrees]C for 30 see, 50[degrees]C for 30 sec, and 72[degrees]C for 30 sec, followed by an extension at 72[degrees]C for 5 min. Reactions were performed in 50 [micro]L by using buffers and Taq polymerase Taq polymerase ("Taq Pol," or simply "Taq") is a thermostable polymerase used in polymerase chain reaction to check for the presence or absence of a gene by amplifying a DNA fragment. It replaced E.coli DNA polymerase in PCR because of the temperature conditions of PCR.  (SphaeroQ, Leiden, Netherlands). The PCR products were purifed with a PCR purification kit (QIAGEN GmbH) according to the manufacturer's instructions. Subsequently, purified PCR products were sequenced directly with the ABI Abi (ā`bī) [short for Abijah], in the Bible, King Hezekiah's mother.


(Application Binary Interface) A specification for a specific hardware platform combined with the operating system.
 PRISM Big Dye Terminators cycle sequencing kit on an ABI PRISM DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 analyzer (Applied Biosystems Applied Biosystems, Inc. (formerly NASDAQ: ABIO) is the original name of a pioneer biotechnology company founded in 1981 in Foster City, California, among the Silicon Valley cities of the southern San Francisco Bay Area. , Foster City, CA). Sequences were aligned with BioNumerics (v. 2.5, Applied Maths, Kortrijk, Belgium) software.

AFLP

AFLP typing and computer analysis of AFLP-generated patterns of VSEF was done as described previously (11) with minor modifications. Briefly, chromosomal DNA was digested with CfoI and EcoRI and ligated to a single adapter with Cfol and EcoRI protruding pro·trude  
v. pro·trud·ed, pro·trud·ing, pro·trudes

v.tr.
To push or thrust outward.

v.intr.
To jut out; project. See Synonyms at bulge.
 ends in a simultaneous reaction, followed by PCR using adapter-specific primers. The amplification products were separated and detected by using POP6-polymer on an ABI PRISM 3700 DNA Analyzer (Applied Biosystems). For each sample, 1 [micro]L of the PCR reaction mixture (8 x diluted) was added to 9 [micro]L of Hi-Di Formamid containing 12.5 [micro]L/mL of the internal size marker (GeneScan-500-labeled with the red fluorescent dye Noun 1. fluorescent dye - a yellow dye that is visible even when highly diluted; used as an absorption indicator when silver nitrate solution is added to sodium chloride in order to precipitate silver chloride (turns pink when no chloride ions are left in solution and  6-carboxy-x-rhodamine) in a MicroAmp Optical 96-well reaction plate (Applied Biosystems). The analyses were run in 3 hours. Genescan software (Applied Biosystems) was used for collection of data during the analysis and the data were subsequently exported into BioNumerics (Applied Maths) for further analysis. The Pearson product moment correlation coefficient Correlation Coefficient

A measure that determines the degree to which two variable's movements are associated.

The correlation coefficient is calculated as:
 was calculated, and the unweighted pair group method with arithmetic averages was used for cluster analysis Cluster analysis

A statistical technique that identifies clusters of stocks whose returns are highly correlated within each cluster and relatively uncorrelated across clusters. Cluster analysis has identified groupings such as growth, cyclical, stable, and energy stocks.
. Using this methodology, we described four genogroups of VREF (11). We analyzed all isolates of VSEF and defined a cluster of isolates as a set of individual strains with AFLP patterns that shared at least 65% of the banding patterns (criterion defined for four genogroups [11]). Subsequently, to determine the matching genogroup, we compared AFLP banding patterns of each individual VSEF isolate with AFLP banding patterns of a library of 404 VREF, representing the four different AFLP genogroups. The library included VREF recovered from pigs (n=108) and nonhospitalized persons (n=28) as representatives of genogroup A, and strains from poultry (n=32), hospitalized patients (n=196), and calves (n=40), representing genogroups B, C, and D, respectively (11,12).

VSEF isolates were identified by using the identification module in BioNumerics. The genetic distance used for further analysis is 100 minus the calculated Pearson product moment correlation similarity coefficient. The degree of matching was expressed by an identification factor, which is the quotient quotient - The number obtained by dividing one number (the "numerator") by another (the "denominator"). If both numbers are rational then the result will also be rational.  of the average genetic distance between the tested strain and each of the isolates in the genogroup divided by the average genetic distance within a genogroup. If the average distance of the tested strain to each of the genogroup members is almost equal to the average distance among all strains in a genogroup, the identification factor will approach the value of one. So the lower the value of the identification factor, the more likely the test strain belongs to a particular genogroup.

Results

Using our predefined cutoff points for cluster analysis, we identified four clusters of VSEF (Figure 1). VSEF clustering seemed to be source-related. Clusters 1 (n=4) and 2 (n=12) contained surveillance isolates from community sources predominantly. All but one of the clinical infections isolates belonged to clusters 3 (n=66) and 4 (n=10), respectively.

[FIGURE 1 OMITTED]

On the basis of our calculations of the identification factors of VSEF and representative isolates of different VREF genogroups, we found that isolates of cluster l (n=4) resembled those of genogroup A, previously allocated to nonhospitalized patients and pig-derived VREF (Table 2). Similarly, isolates of cluster 2 (n=12) fitted best in genogroup B. Isolates from cluster 3 (n=66) showed almost equal resemblance to isolates from genogroups B and C, and isolates from cluster 4 (n=10) were also most identical to isolates from genogroup C (Table 2). The relationship between AFLP clusters of VSEF and sources was congruent con·gru·ent  
adj.
1. Corresponding; congruous.

2. Mathematics
a. Coinciding exactly when superimposed: congruent triangles.

b.
 with the previously described clustering of VREF. Almost all VSEF isolates (99%) derived from clinical infections clustered in clusters 3 and 4, clearly distinct from most VSEF isolates from community surveys (93%), which were found in clusters 1 and 2. A similar distribution was found previously among VREF with most (60%) isolates from clinical infections in genogroup C and most (89%) isolates from community surveys in genogroup A (11).

The presence of the variant esp gene in VREF and VSEF was strongly associated with a specific epidemiologic source because the presence of esp is higher in clinical infections and epidemic-associated isolates than in surveillance isolates (Figure 2). VREF isolates associated with nosocomial outbreaks were esp-positive, except for one. Prevalences of the variant esp gene in clinical infectious isolates were 57% and 40% for VSEF and VREF, respectively (p=ns). Prevalence of the variant esp gene in clinical and community survey isolates was low among VREF (6% and 3%, respectively) and completely absent among the 19 VSEF isolates tested.

Associations similar to the variant esp gene were found between ampicillin resistance and epidemiologic source for enterococcal isolates (Figure 2). All isolated associated with nosocomial VREF-outbreaks but one were resistant to ampicillin, as were 81% and 65% of infectious isolates of VSEF and VREF, respectively. Thirty-one percent of 36 nosocomial surveillance isolates of VREF were ampicillin resistant, as compared to none of five VSEF isolates obtained by clinical surveillance (p=ns). Finally, all but one isolate of VREF (n=36) and all VSEF isolates (n=14) obtained by surveillance of healthy persons were susceptible to ampicillin. When we combined these data, we found strong associations between the presence of the variant esp-gene and ampicillin resistance, both in VREF and VSEF: 98% of esp-positive VSEF and 92% of esp-positive VREF were resistant to ampicillin, as compared to 37% esp-negative VSEF and 20% esp-negative VREF isolates (p<0.0001).

The purK housekeeping gene was sequenced in 103 isolates: 64 VREF and 39 VSEF. The previously described type 1 allele allele (əlēl`): see genetics.
allele

Any one of two or more alternative forms of a gene that may occur alternatively at a given site on a chromosome.
 was found in 39 isolates: 23 VREF and 16 VSEF. This specific allele type was associated with the presence of the variant esp-gene and ampicillin resistance but not with vancomycin resistance. The variant esp-gene was found in 25 (64%) of 39 isolates containing the purK type 1 allele and in only 1 (2%) of 64 isolates carrying other purK alleles (p<0.0001). Similarly, ampicillin resistance was detected in 36 (92%) of 39 isolates with purK type 1 allele and in only 5 (8%) of 64 isolates with other allele types (p<0.0001). In contrast, the vanA transposon transposon /trans·po·son/ (trans-po´zon) a small mobile genetic (DNA) element that moves around the genome or to other genomes within the same cell, usually by copying itself to a second site but sometimes by splicing itself out of its  was present in 23 (59%) of 39 isolates with purK type 1 allele and in 41 (64%) of 64 isolates with other allele types (p=ns).

Discussion

Our study demonstrates the genetic relatedness of clusters of isolates of vancomycin-resistant and -susceptible E. faecium strains from different epidemiologic sources and provides evidence for selection of an E. faecium subtype associated with hospital outbreaks. This subtype is characterized by the presence of both ampicillin resistance and the variant esp gene. Furthermore, our findings suggest random horizontal spread Horizontal Spread

An options strategy involving the simultaneous purchase and sale of two options of the same type, having the same strike price, but different expiration dates.
 of the vanA transposon to multiple genogroups of E. faecium. We hypothesize hy·poth·e·size  
v. hy·poth·e·sized, hy·poth·e·siz·ing, hy·poth·e·siz·es

v.tr.
To assert as a hypothesis.

v.intr.
To form a hypothesis.
 that the rise in infections caused by VREF resulted from nosocomial selection of a specific ampicillin-resistant E. faecium genotype genotype (jēn`ətīp'): see genetics.
genotype

Genetic makeup of an organism. The genotype determines the hereditary potentials and limitations of an individual.
 harboring the variant esp gene and subsequent horizontal transfer of the vanA transposon.

Our study confirms that the previously demonstrated dichotomy between VREF isolated from healthy persons and patients (11) also exists for vancomcyin-susceptible E. faecium isolates. In VREF isolates, we could identify four genogroups, which were associated with particular hosts and environments and in which most isolates from healthy persons clustered distinctly from patient isolates. We showed that vancomycin-susceptible isolates clustered into three of these groups and that VSEF isolates from healthy persons also clustered distinctly from patient isolates. The genetic relationship between isolates and the genetic distinction between the four genogroups were based on AFLP analysis. We recently confirmed these findings with multilocus sequence typing (MLST MLST Multi Locus Sequence Typing
MLST Medical Logistics Support Team
MLST Mini Losi Super Truck (1/18th scale radio control vehicle) 
) (13). Other researchers have also demonstrated host specificity of E. faecium. Quednau et al. suggested host specificity of isolates from chicken, pork, and humans by comparing restriction endonuclease restriction endonuclease

one of over 200 enzymes isolated from bacteria that cleave any DNA molecule at specific sites which are usually palindromes of 4 to 10 or so nucleotides to yield a collection of restriction DNA fragments that can be separated, usually by electrophoresis in
 profiles (26). In contrast, a recent study by Vancanneyt et al. also used AFLP; they did not confirm host-specific clustering of E. faecium (27). They described two main genomic groups in a population of 78 E. faecium strains isolated from seven European countries, and both groups comprised strains from (healthy) humans, animals, and food. All human clinical strains clustered in the largest genogroup, as did all strains (n=16) containing the vanA gene. Our findings that the vanA transposon was present in isolates of all genogroups proves that acquisition of this transposon was not influenced by and did not affect the preexisting pre·ex·ist or pre-ex·ist  
v. pre·ex·ist·ed, pre·ex·ist·ing, pre·ex·ists

v.tr.
To exist before (something); precede: Dinosaurs preexisted humans.

v.intr.
 relationship between the bacterium and host, which is a result of a long-term coevolution co·ev·o·lu·tion  
n.
The evolution of two or more interdependent species, each adapting to changes in the other. It occurs, for example, between predators and prey and between insects and the flowers that they pollinate.
 and mutual adaptation.

The presence of four genogroups in E. faecium seems to parallel the phylogenetic phy·lo·ge·net·ic
adj.
1. Of or relating to phylogeny or phylogenetics.

2. Relating to or based on evolutionary development or history.
 structure in E. coli E. coli: see Escherichia coli.
E. coli
 in full Escherichia coli

Species of bacterium that inhabits the stomach and intestines. E. coli can be transmitted by water, milk, food, or flies and other insects.
, in which four ancestral groups (A, B1 B2, and D) have been described with some level of host specificity (28). However, in contrast to our finding of a single genetic lineage in E. faecium related to clinical symptoms and carrying the esp virulence gene, clinical isolates of E. coli are more widely distributed Adj. 1. widely distributed - growing or occurring in many parts of the world; "a cosmopolitan herb"; "cosmopolitan in distribution"
cosmopolitan

bionomics, environmental science, ecology - the branch of biology concerned with the relations between organisms
 among the different ancestral groups (29). Furthermore, MLST of pathogenic E. coli strains showed that different ancestral lineages have acquired the same virulence factors (30), indicating that pathogenic potential in E. coli is not confined to a single ancestral lineage, which is suggested by our findings for E. faecium. Human and animal pathogenic E. coli strains share closely related genotypes and carry similar virulence factor profiles, suggesting that certain E. coli strains are pathogenic for both animals and humans (31). Whether this holds true for pathogenic E. faecium strains is unknown.

We recently found that the presence of the variant espgene is associated with nosocomial outbreaks of VREF in three continents, although this gene was not found in VREF strains isolated from healthy persons or animals (12). The outbreak strains were also characterized by a specific allele type of the purK gene, one of the housekeeping genes sequenced in the MLST method (13). Recently, other investigators reported the presence of the variant esp gene in clinical isolates of VSEF, demonstrating that this gene is not linked specifically to the vanA transposon (15-18). The findings of our study confine the strong association between the presence of the esp gene and the relation with hospital outbreaks and clinical infections among patients with VREF as well as VSEF. Although the esp gene is virtually absent among community isolates, the presence of esp among VSEF and VREF from clinical infectious sites apparently unrelated to hospital outbreaks implies that this gene is not exclusively related to epidemic strains. Excluding the outbreak potential of the esp-positive VSEF strains in this and other studies is difficult. Only few outbreaks with VSEF have been documented (32-34). We have investigated and could not demonstrate the presence of the variant esp gene in isolates from one hospital outbreak of ampicillin-resistant E. faecium in Norway (data not shown).

Little is known about the function of the variant espgene, although epidemiologic findings support its role as a virulence factor. In E. faecalis, the homologue homologue /ho·mo·logue/ (hom´ah-log)
1. any homologous organ or part.

2. in chemistry, one of a series of compounds distinguished by addition of a CH2 group in successive members.
 of this gene encodes for the enterococcal surface protein, and the presence of this gene has been associated with enhanced adherence capacities to uroepithelial surfaces, but not with increased virulence, in a mice model (35). Moreover, in E. faecalis, the esp-gene was highly associated with biofilm-formation capacity (36). Increased adherence capacities and biofilm Biofilm

An adhesive substance, the glycocalyx, and the bacterial community which it envelops at the interface of a liquid and a surface. When a liquid is in contact with an inert surface, any bacteria within the liquid are attracted to the surface and adhere
 formation of esp-positive E. faecium strains might explain its association with hospital outbreaks.

Like the variant esp gene, ampicillin resistance was found more frequently in isolates associated with infections and nosocomial outbreaks, both in VSEF and VREF. This source-relationship is probably caused by selective pressure of [beta]-lactam antibiotics that are used extensively in hospitals. Emergence of ampicillin resistance in E. faecium was already demonstrated in the early 1980s and seemed to precede the emergence of vancomycin resistance by 10 years (2). A correlation between high prevalences of the esp gene and antibiotic resistance among E. faecium isolates from hospitalized patients was also reported recently by Coque et al. (17).

Considering the sources of isolates, presence of ampicillin and vancomycin resistance, the presence of the variant esp gene, and the type 1 allele of the purK gene, we propose an evolutionary scheme for the specific genogroup of E. faecium associated with nosocomial outbreaks (Figure 3). However, our findings might have been biased by the composition of our collection of isolates and the fact that the purK was sequenced in a subset of all isolates. The esp gene and ampicillin resistance can obviously co-occur in a distinct genetic lineage of E. faecium characterized by the type 1 allele of the purK gene. We propose that E. faecium strains containing the type 1 allele of the purK gene have acquired the esp virulence gene and that this E. faecium genotype (purK-1, esp-positive) is prominently present among clinical relevant strains and virtually absent among survey isolates. Yet another substantial part of the clinical relevant strains with genotype purK-l do not carry the esp gene, which emphasizes that other virulence genes of E. faecium apart from esp are involved in the development of infections. Ampicillin resistance was predominantly found among the purK-1 genotype and is almost absent among other E. faecium genotypes. This occurrence of resistance is, presumably pre·sum·a·ble  
adj.
That can be presumed or taken for granted; reasonable as a supposition: presumable causes of the disaster.
, the result of selective antibiotic pressure. Chromosomal linkage of the purK-1 allele, the variant esp gene, and ampicillin resistance could have promoted this selection. Finally, glycopeptide usage in and outside hospitals, both in humans and animals, resulted in the selection of vancomycin-resistant strains in both the purK-1 genotype and the other genotypes. The presence of similar proportions of vancomycin resistance in all genotypes probably reflects horizontal transfer of the vancomycin-resistance transposon. This hypothesis implies the development of a hospital-adapted genogroup of E. faecium, characterized by the type-1 allele of purK, the variant esp-gene, and ampicillin resistance, which has spread unnoticed, thereby creating a pool of strains with epidemic potential. Only after becoming vancomycin-resistant has this genogroup become recognized as clinically relevant.

[FIGURE 3 OMITTED]
Table 1. Description of studied Enterococcus faecium isolates

Origin                              Country        n

Vancomycin-resistant E. faecium

Epidemic                          United Kingdom   1
                                   Netherlands     4
                                  United States    11

Clinical infections                  Austria       1
                                  United Kingdom   7
                                      Israel       2
                                      Italy        1
                                   Netherlands     8
                                  United States    1

Clinical surveillance                Germany       1
                                      France       4
                                  United Kingdom   1
                                      Israel       1
                                      Italy        1
                                   Netherlands     27
                                     Slovenia      1

Community                         United Kingdom   1
surveillance                       Netherlands     35

Vancomycin-susceptible
E. faecium

Clinical infections                  Austria       6
                                     Belgium       1
                                   Switzerland     3
                                     Germany       14
                                      Spain        8
                                      France       8
                                  United Kingdom   1
                                      Greece       1
                                      Italy        16
                                      Poland       5
                                     Portugal      5
                                      Turkey       5

Clinical surveillance              Netherlands     5

Community                          Netherlands     14
surveillance

Table 2. Mean identification factor calculated for 92
vancomycin-susceptible Enterococcus faecium (VSEF) in
clusters 1, 2, 3, and 4 to the vancomycin-resistant
E. faecium (VREF) genogroups A-D

                   Genogroup A           Genogroup B

Cluster   n          IF (a)                  IF

1         4    1.48 [+ or -] 0.06#   1.76 [+ or -] 0.16
2         12   2.25 [+ or -] 0.20    1.53 [+ or -] 0.10#
3         66   2.98 [+ or -] 0.10    1.58 [+ or -] 0.07#
4         10   3.91 [+ or -] 0.45    2.36 [+ or -] 0.29

              Genogroup C          Genogroup D

Cluster           IF                    IF

1          2.5 [+ or -] 0.16    3.93 [+ or -] 0.31
2         2.12 [+ or -] 0.15    3.33 [+ or -] 0.16
3         1.72 [+ or -] 0.09#   3.97 [+ or -] 0.06
4         1.39 [+ or -] 0.05#   4.74 [+ or -] 0.32

(a) The mean identification factor (IF) represents
a measure of how well the entries of the four different
VSEF clusters belong to one of the previously described
VREF genogroups, taking into consideration the internal
spread of the VREF genogroups. Mean identification factor
was determined by calculating the arithmetic averages
of identification factors of isolates of a given cluster.
The lowest identification factor (indicated in boldface type)
represents the highest probability that isolates in a given
VSEF cluster belong to a certain VREF genogroup.
The 95% confidence limits are shown for each identification factor.

Note: The lowest identification factor indicated by #.

Figure 2. Frequencies of the esp gene and ampicilin
resistance among vancomycin-susceptible enterococci (VSE)
and vancomycin-resistant enterococci (VRE) of different origin.
Percentages of esp-positive (solid bars) and ampicilin-resistant
(dotted bars) VRE and VSE isolates originating from four
different sources have been indicated. Cli-Inf, clinical
infectious; Clin-Surv, clinical survey; Comm-Surv, community
survey.

            AmpR   Esp+

Epidemic
  VREF       94     94
  (n=16)
Clin-Inf
  VREF       65     40
  (n=20)
  VSEF       81     57
  (n=73)
Clin-Surv
  VREF       31     6
  (n=36)
  VSEF       0      0
  (n=5)
Comm-Surv
  VREF       3      3
  (n=36)
  VSEF       0      0
  (n=14)

Note: Table made from bar graph.


Acknowledgments

We thank N. Bruinsma for vancomycin-susceptible Enterococcus faecium samples.

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Use of trade names is for identification only and does not imply endorsement by the Public Health Service or by the U.S. Department of Health and Human Services Noun 1. Department of Health and Human Services - the United States federal department that administers all federal programs dealing with health and welfare; created in 1979
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Ms. Leavis worked on this study while a medical intent at the Division of Acute Internal Medicine and Infectious Diseases infectious diseases: see communicable diseases.  at University Medical Center, Utrecht, Netherlands, and at the National Institute of Public Health and the Environment (RIVM RIVM Rijksinstituut voor Volksgezondheid en Milieu ), Bilthoven, Netherlands. Her research interests include the epidemiology of vancomycin-resistant enterococci and enterococcal pathogenicity mechanisms.

Address for correspondence: M.J.M. Bonten, Department of Internal Medicine, Division of Acute Internal Medicine and Infectious Diseases, University Medical Center Utrecht The Universitary Medical Center Utrecht (Dutch: Universitair Medisch Centrum Utrecht) or UMCU is the main hospital of the city of Utrecht. It is affiliated with the Universiteit Utrecht. , Heidelbcrglaan 100, 3584 CX Utrecht, the Netherlands; Fax: +31 30 2523741; email: m.j.m.bonten@digd.azu.nl

Helen L. Leavis, * ([dagger]) Rob J.L. Willems, ([dagger]) Janetta Top, ([dagger]) Emile Spalburg, ([dagger]) Ellen M. Mascini, * Ad C. Fluit, * Andy Hoepelman Ilja Mohandas ("Andy") Hoepelman (born March 26, 1955 in Hilversum, Noord-Holland) is head of the Department of Internal Medicine and Infectious Diseases at the University Medical Center, Utrecht in the Netherlands. , * Albert J. de Neeling, ([dagger]) and Marc J.M. Bonten *

* University Medical Center Utrecht, the Netherlands; and ([dagger]) National Institute of Public Health and the Environment (RIVM), Bilthoven, the Netherlands
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Title Annotation:Research
Author:Bonten, Mark J.M.
Publication:Emerging Infectious Diseases
Geographic Code:4E
Date:Sep 1, 2003
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