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Early identification of common-source foodborne virus outbreaks in Europe.


The importance of foodborne viral infections viral infection,
n an infection by a pathogenic virus. A virus acts on the cell nucleus, taking over the genetic material within the nucleus and replicating itself.
 is increasingly recognized. Food handlers can transmit infection during preparation or serving; fruit and vegetables may be contaminated contaminated,
v 1. made radioactive by the addition of small quantities of radioactive material.
2. made contaminated by adding infective or radiographic materials.
3. an infective surface or object.
 by fecally contaminated water used for growing or washing. And the globalization globalization

Process by which the experience of everyday life, marked by the diffusion of commodities and ideas, is becoming standardized around the world. Factors that have contributed to globalization include increasingly sophisticated communications and transportation
 of the food industry mean that a contaminated food item may not be limited to national distribution. International outbreaks do occur, but little data are available about the incidence of such events and the food items associated with the highest risks. We developed a combined research and surveillance program for enteric viruses enteric virus
n.
See enterovirus.
 involving 12 laboratories in 9 European countries. This project aims to gain insight into the epidemiology of enteric viruses in Europe and the role of food in transmission by harmonizing (i.e., assessing the comparability of data through studies of molecular detection techniques) and enhancing epidemiologic surveillance epidemiologic surveillance The ongoing, systematic collection, analysis, and interpretation of health data essential to planning, implementing, and evaluating public health practice, closely integrated with the timely dissemination of these data to those who need to know . We describe the setup and preliminary results of our system, which uses a Web-accessible central database to track viruses and provides the foundation for an early warning system of foodborne and other common-source outbreaks.

**********

Food-related illness is common worldwide, and bacterial pathogens have historically been associated with this mode of transmission. In recent years, however, the cause of most outbreaks of foodborne illness A foodborne illness (also foodborne disease) is any illness resulting from the consumption of food. Although foodborne illness is commonly called food poisoning, this is often a misnomer.  remained unknown, although a significant proportion were presumed to be viral (1). Additional research established the importance of viruses, especially the human caliciviruses belonging to the genus Norovirus (NV) (2). Transmission of these viruses is primarily from person to person, but numerous examples illustrate that NV are efficiently transmitted in food, water, or contaminated environmental surfaces. NV similar to, but not identical with, human strains have been found in cattle and in pigs (3,4). Studies in which viruses were molecularly characterized have shown that numerous variants co-circulate in the community but that occasionally shifts occur in which a single variant dominates over a wide geographic region (5). In 1995 to 1996, a worldwide epidemic was observed (6). The mechanism of emergence of these variants is unclear, but one hypothesis is that they represent widespread common-source events.

While it is clear that enteric enteric /en·ter·ic/ (en-ter´ik) within or pertaining to the small intestine.

en·ter·ic
adj.
1. Of, relating to, or within the intestine.

2.
 viral infections are common, far less established is how common the foodborne mode of transmission is and how important it is in the epidemiology of these viruses. The challenge lies not so much in detecting outbreaks related to foodborne contamination at the end of the chain (the food handler in the nursing home or restaurant), because those are likely to be detected by routine outbreak investigation, with or without molecular typing. Linking NV outbreaks to common-source introductions nationally or internationally may be more difficult because of the high secondary attack rate that results from rapid person-to-person transmission. Thus, an initial seeding event will rapidly be masked by the occurrence of new cases or outbreaks, suggesting that person-to-person transmission is the primary mode of spread. The likelihood of detecting such seeding events relies on effective surveillance, which combines epidemiologic assessment of the outbreak and molecular typing to discover and track potential links between outbreaks. Such molecular tracing, however, requires knowledge on diversity of "resident viruses" in the region under study to be able to recognize unusual increases. Therefore, we established a combined research and surveillance network for foodborne viruses that was granted by the European Commission European Commission, branch of the governing body of the European Union (EU) invested with executive and some legislative powers. Located in Brussels, Belgium, it was founded in 1967 when the three treaty organizations comprising what was then the European Community . This project group combines complementary expertise from the fields of diagnostic virology virology, study of viruses and their role in disease. Many viruses, such as animal RNA viruses and viruses that infect bacteria, or bacteriophages, have become useful laboratory tools in genetic studies and in work on the cellular metabolic control of gene expression , molecular virology Molecular Virology is the study of viruses at the molecular level. In particular, this includes the analysis of individual viral genes and gene products, and their interaction with host (human, plant or animal) cellular proteins. , epidemiology, and food microbiology Food microbiology is the study of the microorganisms which inhabit, create or contaminate food. It is a subdiscipline of food science. Food safety
Food safety is a major focus of food microbiology.
 to study modes of transmission of NV across Europe. Mapping these pathways allows better founded estimates of the proportion of illness that may be attributed to foodborne transmission and identification of high-risk foods, processing methods, or import and transport routes, which subsequently can be a focus of prevention programs. The data are important for assessing the risks associated with consumption of certain food items. Essential to the success of this project is the establishment of a common, central database, which is now used by all partners to compare data across Europe as soon as they are available. We describe this project and results from its first 18 months of operation.

Materials and Methods

The network is a collaboration among 12 laboratories in 9 countries in Europe to allow more rapid and internationally harmonized har·mo·nize  
v. har·mo·nized, har·mo·niz·ing, har·mo·niz·es

v.tr.
1. To bring or come into agreement or harmony. See Synonyms at agree.

2. Music To provide harmony for (a melody).
 assessment of the spread of foodborne viral pathogens. The project is coordinated by the National Institute of Public Health and the Environment in Bilthoven, the Netherlands. Participants are virologists and epidemiologists with active research programs in (foodborne) enteric viruses from Spain (Barcelona, Valencia, Madrid), Italy (Rome), France (Nantes, Dijon), Germany (Berlin), the Netherlands (Bilthoven), the United Kingdom (London), Denmark (Copenhagen), Sweden (Solna), and Finland (Helsinki). In addition, groups from Slovenia and Hungary participate.

The overall objectives for the complete study are as follows: 1) to develop novel, standardized, rapid methods for detection and typing of enteric viruses, particularly NV, to be used in all participating laboratories; 2) to establish the framework for a rapid, prepublication pre·pub·li·ca·tion  
adj.
Of or relating to the time just before a publication date, especially of a book: The marketing department was amazed by the number of prepublication orders. 
 exchange of epidemiologic, virologic, and molecular diagnostic data; 3) to study the importance of enteric viruses as causes of illness across Europe, with a special focus on multinational outbreaks of infection with NV and hepatitis A virus Noun 1. hepatitis A virus - the virus causing hepatitis A
enterovirus - any of a group of picornaviruses that infect the gastrointestinal tract and can spread to other areas (especially the nervous system)
; 4) to provide better estimates for the proportion of NV infections that can be attributed to foodborne infection; 5) to determine high-risk foods and transmission routes of foodborne viral infections in the different countries and between countries; 6) to describe the pattern of diversity of NV within and between countries and identify potential pandemic pandemic /pan·dem·ic/ (pan-dem´ik)
1. a widespread epidemic of a disease.

2. widely epidemic.


pan·dem·ic
adj.
Epidemic over a wide geographic area.

n.
 strains at the onset; and 7) to investigate the mechanisms of emergence of these strains, including the possibility of spillover spill·o·ver  
n.
1. The act or an instance of spilling over.

2. An amount or quantity spilled over.

3. A side effect arising from or as if from an unpredicted source:
 from animal reservoirs

The central research goal is to better understand the mechanisms of emergence of variant NV strains. We hypothesized that the observed epidemic shifts might be caused by displacement of endemic variants attributable to a large seeding event with a variant that subsequently spread through the population by secondary and tertiary waves of transmission, or possibly by a smaller seeding event of a highly transmissible transmissible /trans·mis·si·ble/ (trans-mis´i-b'l) capable of being transmitted.

trans·mis·si·ble
adj.
Capable of being conveyed from one person to another.
 new variant, generated by genetic mutation Noun 1. genetic mutation - (genetics) any event that changes genetic structure; any alteration in the inherited nucleic acid sequence of the genotype of an organism
chromosomal mutation, mutation
 or recombination recombination, process of "shuffling" of genes by which new combinations can be generated. In recombination through sexual reproduction, the offspring's complete set of genes differs from that of either parent, being rather a combination of genes from both parents. . To address these questions, we built a European surveillance structure for outbreaks of viral gastroenteritis viral gastroenteritis Intestinal flu Infectious disease A generic term for GE induced by viruses Clinical presentations 1. Epidemic VGE, most often caused by the Norwalk agent or Norwalk-like viruses Clinical N&V, diarrhea, abdominal pain, anorexia, , including food- or water-borne outbreaks. The first phase of the project, described in this report, was designed to review existing surveillance systems for viral gastroenteritis, to design and agree on a minimum dataset for collection during the second phase of the project; to review and evaluate currently used methods for detection and genotyping Genotyping refers to the process of determining the genotype of an individual with a biological assay. Current methods of doing this include PCR, DNA sequencing, and hybridization to DNA microarrays or beads.  of NV with the aim of harmonizing methods for virus detection in gastroenteritis gastroenteritis: see enteritis.
gastroenteritis

Acute infectious syndrome of the stomach lining and intestines. Symptoms include diarrhea, vomiting, and abdominal cramps.
 outbreaks; and to build a database of combined epidemiologic and virologic data for use by all participants. The over-riding aim was to facilitate the early detection of potentially emerging variant strains. Upon completion of this phase, we will begin "enhanced suveillance", i.e., harmonized surveillance for viral gastroenteritis outbreaks to study objectives 4-7.

Results

Review of Current Methods in Europe

From the outset, it was recognized that the best approach in developing an international surveillance scheme for foodborne viruses would not be the standardization of practice, but rather the harmonization har·mo·nize  
v. har·mo·nized, har·mo·niz·ing, har·mo·niz·es

v.tr.
1. To bring or come into agreement or harmony. See Synonyms at agree.

2. Music To provide harmony for (a melody).
 of existing practices. To achieve this, a number of surveys were undertaken to determine diagnostic capabilities, genotyping techniques, and the status of surveillance of viral gastroenteritis outbreaks among project participants. The results of these surveys are highlighted below.

Virus Detection and Genotyping

The scale of diagnostic capability in laboratories varies widely, and a range of diagnostic tests (electron microscopy electron microscopy

Technique that allows examination of samples too small to be seen with a light microscope. Electron beams have much smaller wavelengths than visible light and hence higher resolving power.
, reverse transcription-polymerase chain reaction [RT-PCR RT-PCR

reverse transcriptase-polymerase chain reaction. See PCR1.
], and enzyme-linked immunosorbent assay enzyme-linked immunosorbent assay
n.
ELISA.


Enzyme-linked immunosorbent assay (ELISA)
A diagnostic blood test used to screen patients for AIDS or other viruses.
) and characterization methods are used (including heteroduplex mobility assay, reverse line blot, microplate hybridization hybridization /hy·brid·iza·tion/ (hi?brid-i-za´shun)
1. crossbreeding; the act or process of producing hybrids.

2. molecular hybridization

3.
, and sequencing (7-9). Laboratories in all countries now use molecular techniques (RT-PCR) for NV detection (10).

A comparative evaluation of RT-PCR assays was done by analysis of a coded panel of stool samples that had tested positive (81 samples) or negative (9 samples) for NV. Samples provided by four laboratories were included, as well as a samples representing the currently known diversity of NV genotypes. Full details of this study have been published (11). This evaluation showed that no single assay is best, although sensitivities range from 55% to 100%. Most differences were seen when comparing assay sensitivities Assay sensitivity is a property of a clinical trial defined as the ability to distinguish an effective treatment from a less effective or ineffective treatment. Without assay sensitivity, a trial cannot be said to make a distinction between the efficacy of two treatments.  by genogroup. Based on pre-set scoring criteria (sensitivity, specificity, assay format, length of sequence), one primer combination was ranked as the assay of first choice for laboratories starting surveillance, and protocols and reagents have been made available to all participants on request.

On the basis of the aggregated data from the sequence database, alignments were made of the regions in the viral RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
 that contain the primer-binding sites for the set of primers with the highest ranking for the diagnostic evaluation diagnostic evaluation Workup Medtalk An evaluation used to diagnose disease Components Medical Hx, CXR or other images, collection of specimens from blood for lab analysis  to generate more optimal designs of primers (12). These primers, protocols, and reference reagents have been made available to several groups in the field.

Outbreak Investigations

While all countries in the network now have the diagnostic capability to recognize outbreaks of NV the structure of their national surveillance differs and therefore, so do the epidemiologic data collected on viral gastroenteritis (10,13). Some countries investigate outbreaks of gastroenteritis irrespective of irrespective of
prep.
Without consideration of; regardless of.

irrespective of
preposition despite 
 the size or possible mode of transmission (United Kingdom, the Netherlands); others primarily investigate outbreaks that appear as foodborne from the onset (Denmark, France) (10). Similarly, coverage of the laboratories involved ranges from regional (Italy) to national, although different levels of underreporting are likely to exist (10) These differences, as well as differences in the laboratory test protocols, will be taken into consideration when interpreting aggregated data in the later stages of the project. For the purposes of comparing data across Europe, however, the key finding was that most countries maintain a national database of NV outbreaks (as opposed to individual cases). Although the proportion of the population that these databases effectively survey and the completeness of clinical information collected vary, we recognized that we could network national outbreak surveillance by agreeing on a minimum dataset. That dataset would include the causative caus·a·tive  
adj.
1. Functioning as an agent or cause.

2. Expressing causation. Used of a verb or verbal affix.



caus
 organism, mode and place of transmission, diagnostic results, case details, food vehicles, and viral typing information.

Also agreed upon Adj. 1. agreed upon - constituted or contracted by stipulation or agreement; "stipulatory obligations"
stipulatory

noncontroversial, uncontroversial - not likely to arouse controversy
 were clinical definitions of a case and an outbreak of viral gastroenteritis based on Kaplan's criteria (14), as follows. A case of gastroenteritis was defined as a person seen with 1) vomiting vomiting, ejection of food and other matter from the stomach through the mouth, often preceded by nausea. The process is initiated by stimulation of the vomiting center of the brain by nerve impulses from the gastrointestinal tract or other part of the body.  (two or more episodes of vomiting in a 12-hour period lasting [greater than or equal to] 12 hours), or 2) diarrhea (two or more loose stools in a 12-hour period lasting [greater than or equal to] 12 hours, or 3) vomiting as defined in 1) and diarrhea as defined in 2). An outbreak was defined as follows: 1) Patients living in more than one private residence or resident or working in an institution at the time of exposure; 2) cases linked by time and place; 3) vomiting in [greater than or equal to] 50% of total cases (14); 4) mean or median duration of illness of total cases from 12 to 60 hours; 5) incubation period incubation period
n.
1. See latent period.

2. See incubative stage.


Incubation period 
 (if available) of total cases between 15 and 77 hours, usually 24-48 hours (14,15); and 6) testing of stool specimens for bacterial pathogens. (This step is not mandatory;, however, if tested, all specimens should be negative for bacterial pathogens.)

Development of Database

A major goal of the first year was to build a database into which historic information present in the participating institutes would be collected. The rationale behind this was that by combining this existing information, new observations (on seasonality of outbreaks or patterns of emergence of new variants, for example) might be possible. Without harmonization of data collection, the comparative analysis would clearly be limited. The historic database, however, also served as a pilot phase because the definitive format of the database is used in the enhanced surveillance program. Participants who had historic collections of sequences were asked to submit these, along with additional epidemiologic information, as described in Table 1. Data were entered by using the Bionumerics (BN) package (Applied Maths, Ghent, Belgium), which allows storage, comparative analysis, and clustering of combined epidemiologic and biological experimental data (e.g., sequences, reverse line blot results, enzyme immunoassay Immunoassay

An assay that quantifies antigen or antibody by immunochemical means. The antigen can be a relatively simple substance such as a drug, or a complex one such as a protein or a virus.
 data). The entries were either uploaded from the public domain or submitted as unpublished sequences from participating laboratories. Publicly available sequences were included to provide a customized report for database searches, e.g., genotype genotype (jēn`ətīp'): see genetics.
genotype

Genetic makeup of an organism. The genotype determines the hereditary potentials and limitations of an individual.
 to which the sequence belongs.

Since September 2001, participants have been able to access the database directly through a password-controlled Internet connection. At present, the database contains >2,500 entries, mostly on NV, but including some hepatitis A virus, astrovirus, and Sapovirus (Tables 2 and 3). Upcoming variants will first be subjected to a search of the historic database to determine if the viruses have been seen before in Europe. An automated search tool is available and has been made accessible through the Internet to participants. Partners interested in analyzing the data can obtain the complete dataset, provided they adhere to adhere to
verb 1. follow, keep, maintain, respect, observe, be true, fulfil, obey, heed, keep to, abide by, be loyal, mind, be constant, be faithful

2.
 the confidentiality agreements signed by every partner. Interested parties outside the project group can access the database under certain conditions through the coordinator or one of the participants. This access is not restricted to groups in the participating countries. The limiting factor A factor or condition that, either temporarily or permanently, impedes mission accomplishment. Illustrative examples are transportation network deficiencies, lack of in-place facilities, malpositioned forces or materiel, extreme climatic conditions, distance, transit or overflight rights,  is the target region used for virus characterization, which has not been standardized globally. A database search will be performed upon request (for groups outside the network). Results are then communicated to them and to the person who submitted any matching sequences. After that initial linking, follow-up discussions and investigations of possible common-source events can be clone by the groups involved.

Prospective Enhanced Surveillance

Comparative Evaluation of Diagnostic/Genotyping Methods

The different PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
 primers used among the European group all target a highly conserved region The term Conserved region may refer to:
  • Conservation (genetics)
  • Highly conserved sequence
 within the viral polymerase gene. Sequences of the amplicons from the various diagnostic PCRs overlap and therefore, can be compared to gain inferences on the molecular epidemiology molecular epidemiology Molecular medicine An evolving field that combines the tools of standard epidemiology–case studies, questionnaires and monitoring of exposure to external factors with the tools of molecular biology–eg, restriction endonucleases,  and the spread of NV variants (11). Rapid characterization techniques, notably the reverse line blot (9) and heteroduplex mobility assay (7), are also used within the network; the typing data generated by these techniques can also be accommodated by the database.

Comparative Evaluation of Data

After agreement on a minimum epidemiologic and virologic dataset, we made a standard Web-based questionnaire available to all participants behind a password-protected site (available from: URL URL
 in full Uniform Resource Locator

Address of a resource on the Internet. The resource can be any type of file stored on a server, such as a Web page, a text file, a graphics file, or an application program.
: www.eufoodborneviruses.net). Using Web-based Active Server Pages (World-Wide Web, programming) Active Server Pages - (ASP) A scripting environment for Microsoft Internet Information Server in which you can combine HTML, scripts and reusable ActiveX server components to create dynamic web pages.

IIS 4.
 (ASP) technology, investigators have full access to the secure outbreak database (Figure). Investigators are asked to enter information that is available as soon as an investigation begins or an event occurs that meets the outbreak definition. A unique reference number is assigned to each outbreak, which is the key used to access records and to update diagnostic or typing data, as an investigation continues.
Figure. Timeline of Web-based reporting of epidemiologic and
virologic data and interrogation of the database for the Foodborne
Viruses in Europe Group.

1. Enter preliminary outbreak data including epidemiologic and
virologic data www.eufoodborneviruses.net/asp

                     [down arrow]

2. Search for Epidemiologic links: www.eufoodborneviruses.net/asp

                       and/or

Search for Virologic links. http//hypocrates.rivm.nl:81/bnwww/
(NB databases are linked)

                     [down arrow]

3. Coss-reference any matches in the other database.

                     [down arrow]

4. Update the outbreak report form when no information becomes
available www.eufoodborneviruses.net/asp

                     [down arrow]

5. Alert the network partners when potential links are found
with other outbreaks.


The database also collects information on the level of evidence (i.e., microbiologic, epidemiologic, circumstantial EVIDENCE, CIRCUMSTANTIAL. The proof of facts which usually attend other facts sought to be, proved; that which is not direct evidence. For example, when a witness testifies that a man was stabbed with a knife, and that a piece of the blade was found in the wound, and it is found to fit ) implicating im·pli·cate  
tr.v. im·pli·cat·ed, im·pli·cat·ing, im·pli·cates
1. To involve or connect intimately or incriminatingly: evidence that implicates others in the plot.

2.
 food or water as a mode of transmission. Pop-up windows are used to define these criteria, since a range of public health scientists use the system. Other features of the ASP technology, including drop-down menus, are used to standardize the data collected. Descriptive information from outbreaks (number of people exposed, number of people ill, number of controls infected, symptoms) is collected when possible, to allow comparisons of the clinical characteristics of different NV genotypes. Preliminary data suggest that such differences exist.

One of our main scientific objectives is to explain the mechanism behind the emergence of new variant strains. Essential for the early detection of such emerging variants is a rapid reporting network. The initial suspicion of "something strange" may be from clinicians who investigate outbreaks (e.g., a sudden increase in the number of reports), or from one of the laboratories (e.g., finding the same variant in several outbreaks). The central database is used to facilitate both types of reports. The real power in this format of data exchange is that immediately after entry or update of information, the data are in the database and can be accessed by other collaborators. The database can be searched for common virologic (sequence) or epidemiologic (e.g., a food vehicle) characteristics that would trigger further investigation of links between outbreaks.

Recognition of International Outbreaks

This model has proved successful in recognizing a number of internationally linked events. Clusters of cases in Denmark, Finland, and the Netherlands were all linked to oysters imported from France. Another foodborne outbreak traced in part through the network followed the concluding dinner of an international conference in Finland. Symptoms began the day after the conference, when many attendees had returned to their home countries. Approximately 40 persons were affected, and the same NV variant was detected from cases in Finland, Sweden, and the Netherlands. A dessert item was implicated im·pli·cate  
tr.v. im·pli·cat·ed, im·pli·cat·ing, im·pli·cates
1. To involve or connect intimately or incriminatingly: evidence that implicates others in the plot.

2.
 by cohort study A cohort study is a form of longitudinal study used in medicine and social science. It is one type of study design.

In medicine, it is usually undertaken to obtain evidence to try to refute the existence of a suspected association between cause and disease; failure to refute
. Importations of hepatitis A Hepatitis A Definition

Hepatitis A is an inflammation of the liver caused by a virus, the hepatitis A virus (HAV). It varies in severity, running an acute course, generally starting within two to six weeks after contact with the virus, and lasting no
 from Peru into Spain and from Ibiza, Spain, to Germany have also been recognized through the network. Full details of these outbreaks will be published elsewhere.

Discussion

Microbial microbial

pertaining to or emanating from a microbe.


microbial digestion
the breakdown of organic material, especially feedstuffs, by microbial organisms.
 food safety is considered an important public heath issue but historically has focused on control of bacterial contamination. Several recent publications, however, show that outbreaks of foodborne infection attributable to viruses are common and may in fact be an important public health concern for several reasons: most clinical laboratories involved in outbreak investigations do not have access to routine diagnostic methods for detecting NV, user-friendly methods for use in these laboratories are only now becoming available and need to be validated, foodborne transmission of NV is quite common, and food microbial quality control largely relies on indicators for the presence of fecal fecal /fe·cal/ (fe´k'l) pertaining to or of the nature of feces.

fe·cal
adj.
Relating to or composed of feces.



fecal

pertaining to or of the nature of feces.
 bacteria, which may not correlate with the presence of enteric viruses (2,16). Although foodborne viruses are increasingly studied, no validated methods yet exist for reliably detecting them in food items. In all, these facts indicate that through foodborne transmission an enteric viral pathogen Pathogen

Any agent capable of causing disease. The term pathogen is usually restricted to living agents, which include viruses, rickettsia, bacteria, fungi, yeasts, protozoa, helminths, and certain insect larval stages.
 (NV) can escape detection, possibly resulting in large epidemics.

In the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. , molecular detection techniques are being implemented in state public health laboratories under the guidance of the Centers for Disease Control and Prevention Centers for Disease Control and Prevention (CDC), agency of the U.S. Public Health Service since 1973, with headquarters in Atlanta; it was established in 1946 as the Communicable Disease Center.  (CDC See Control Data, century date change and Back Orifice.

CDC - Control Data Corporation
), which is building an infrastructure for reporting of outbreaks of food-related illness attributable to enteric viruses (Calicinet). In Europe, no central institute yet exists with the authority to do this, so the best efforts to date are the voluntary disease-specific Surveillance networks, such as Enternet (which monitors trends in foodborne bacterial pathogens), and the European Influenza Surveillance Scheme (designed to monitor influenza virus influenza virus
n.
Any of three viruses of the genus Influenzavirus designated type A, type B, and type C, that cause influenza and influenzalike infections.
 activity across Europe) (17,18). We have built such a surveillance network for enteric viruses, using NV as a target organism. NV was an obvious choice: an increasing number of publications illustrate that it is one of the most important causes of outbreaks of gastroenteritis, including food- and water-related outbreaks (reviewed in 2). CDC estimates that up to 66% of all food-related illness in the United States may be due to NV (19). From a community-based case-control study case-control study,
n an investigation employing an epidemiologic approach in which previously existing incidents of a medical condition are used in lieu of gathering new information from a randomized population.
 in the Netherlands, risk-factor analysis for NV, based on information collected throughout a 1-year cohort study, suggested an association between NV and a complex score that was used as a proxy for food-handling hygiene. On the basis of this approach, an estimated 12% to 15% of community-acquired illness may be due to food- or waterborne modes of transmission (with 85% attributed to contact with a symptomatic person in or outside the household) (de Wit et al., unpub. data). The proportion of foodborne outbreaks reported in the countries participating in our network ranges from 7% to 100%, but that range merely reflects the differences in the selections used in the different surveillance systems and cannot be used to estimate the true impact of foodborne illness caused by NV (10). While definitive data still need to be collected, the consensus is that NV is an important cause of food-related infection and disease.

Foodborne transmission of viral gastroenteritis has not historically been acknowledged as a public health priority, which means that our surveillance system is inevitably restricted to groups that already have an active program in the field. Ideally, we would like to build a network of national institutes represented by both epidemiologists and microbiologists involved in outbreaks of viral gastroenteritis; however, at present this ideal is not possible for all of Europe. By networking the existing information, assessing comparability of data through studies of primers and protocols used, and examining data from current surveillance, we hope to be able to paint a bigger picture from the fragmented information that is available.

The standardized outbreak questionnaire, accessible through the Internet, is designed to collect a minimum dataset about all outbreaks. However, participants who perform more detailed epidemiologic or virologic investigations can also submit additional data. The minimum dataset will suffice to answer the basic questions for the surveillance, i.e., what is the reported incidence of NV outbreaks across Europe, and which proportion is considered to be due to food- or waterborne transmission.

A key feature of any disease surveillance system is its use as an early-warning tool, in this case for international common-source outbreaks. To facilitate this, several features were included in our database setup. Information on outbreaks can be updated with new information as it comes in, to avoid piling up information until the outbreak investigation has been completed (which may be months later). Both the epidemiologic data and laboratory data (mostly sequences) can be searched easily. Thus, participants can be alerted to similarities in disease profiles (e.g., outbreaks with imported fruits) or in sequences. Either signal can lead to contacts between participants to discuss possible indications for a joint investigation. Crucial in this discussion was the issue of confidentiality, both for patient and product information, and for data from investigations. The present modus operandi [Latin, Method of working.] A term used by law enforcement authorities to describe the particular manner in which a crime is committed.

The term modus operandi is most commonly used in criminal cases. It is sometimes referred to by its initials, M.O.
 is that each participant signs a confidentiality agreement, which states that data submitted to the database are owned by the person submitting them (subject to each participant's national regulations on patient and laboratory data); specific patient and product information is not entered into the database. If necessary for outbreak investigations, the groups involved will decide on a case-by-case basis what information may or may not be used by the consortium. Participants can obtain the complete information from the database for their own analysis, or choose to use it as a search tool and rely on the analysis done by a scientist employed on this aspect of the database, who is stationed in Bilthoven, the Netherlands. So far, five international outbreaks have been detected because of the network.

The food distribution chain in Europe is complex, and therefore the transmission of viruses across borders can occur by means of contaminated food. The surveillance network described here allows early detection of international common-source outbreaks of foodborne viruses. Most of the work to date has involved harmonization of methods for investigating outbreaks and detecting the viruses causing these outbreaks, as well as the development of a database system that facilitates the exchange of information between laboratories and institutes involved in viral gastroenteritis research and surveillance. The system's strength is that it combines basic epidemiologic and laboratory data into a searchable repository. This network has demonstrated its potential to recognize transnational outbreaks. However, the network is inherently limited by the quality of data available at the national level, which is a reflection of the priority given to foodborne viruses. At present, we are undertaking a 2-year enhanced surveillance project to study the frequency and modes of transmission of viral gastroenteritis outbreaks across Europe.
Table 1. Requested data fields for entries of viral sequences in
the historic database (a)

Field name                         Field type   Mandatory field

Country                                A              Yes
Institute                              A              Yes
Reference no.                          A              Yes
Type of virus (NV, SV, HAV,            N              Yes
  ASV, HEV
Sequence identifier (e.g.,             A              No
  GenBank accession no.)
Method no.                             N              No
Genotype/subtype                       N              No
Sequence pol region /VP1/2a            A              Yes
Sequence capsid region                 A
Source of isolate (human, calf         N              Yes
  swine, environmental, other)
Specimen                               N              No
Epidemiology                           N              No
Vehicle (food, water, person-to-       N              No
  person, zoonotic, not known)
National region                        A              No
Date of receipt in reference           D              Yes
  laboratory
Age                                    N              No
Sex                                    N              No
Travel associated                      N              No
Travel destination                     A              No

(a) NV, Norovirus; SV, Sapovirus; ASV, astrovirus; HAV, hepatitis
A virus; HEV, hepatitis E virus; A, letters and numbers; B,
numbers; D, data.

Table 2. Number of entries in the database by year of detection for
selected viruses, as determined by reverse line blot typing RLB (a)

                                                 NLV
                   N    HAV   SLV   ASV   NLV   capsid

Not dated         364   69     4     7    284    152
1989 and before   102   68     2    --    32      15
1990              43    31     1    --    11      7
1991               5    --    --    --     5      2
1992              11    --     2    --     9      3
1993              21    --     2    --    19      14
1994              45    --     1    --    44      20
1995              49    --    --     2    47      15
1996              122   --     1     4    117     18
1997              122   --     -     1    121     8
1998              158   --     2     6    152     19
1999              531   44     2    26    485     39
2000              446   40     2    --    404     61
2001              419    5     2     2    410     52
2002              155   --    --    --    745     22

                            NLV cap
                  NLV pol   and pol   RLB   Animal

Not dated           119        9       1      2
1989 and before     23         7
1990                10         6
1991                 5         2
1992                 7         3
1993                26        11
1994                38        14
1995                41         9
1996                100        2
1997                117        5       3      6
1998                130       11       6      13
1999                366       32      129     7
2000                380       41      26      6
2001                396       52      --      --
2002                742       15      --

(a) HAV, hepatitis A virus; SLV, Sapporo-like virus; ASV, astrovirus;
NLV, Norwalk-like viruses.

Table 3. Number of entries in the database by country
of submission (a)

                 No. of
Country          entries   HAV   ASV   NLV   SLV

Argentina           9                  10
Australia          17                  17
Canada             20                  20
Switzerland        23                  23
Czech Republic      1        1
Germany            167       1         432
Hungary            93                  93
Denmark            67                  67
Spain              33       18         102
Finland            90                  130
France             216           24    203    7
Great Britain      509       1         566    3
Ghana               2                   2
Hong Kong           7                   7
Japan              363                 388    3
Korea               1                   1
Mexico              1                   1
Netherlands        743      87   24    707
Norway             13                  13
New Zealand         5                   5
Russia              8                   8
South Africa        9                   5     4
Sweden             101                 100    1
Turkey              1        1
United States      67        6         59     2

(a) HAV, hepatitis A virus; ASV, astrovirus; NLV, Norwalk-like
viruses; SLV, Sapporo-like virus.


Core funding for this project was obtained from the European Union European Union (EU), name given since the ratification (Nov., 1993) of the Treaty of European Union, or Maastricht Treaty, to the

European Community
 under the 5th framework program, contract no QLK1-1999-C-00594.

References

(1.) Hall JA, Goulding J, Bean N, Tauxe R, Hedberg C. Epidemiologic profiling: evaluating foodborne outbreaks for which no pathogen was isolated by routine laboratory testing: United States, 1982-9. Epidemiol Infect 2001;127:381-7.

(2.) Koopmans M, von Bonsdorff C, Vinje J, de Medici Medici, Italian family
Medici (mĕ`dĭchē, Ital. mā`dēchē), Italian family that directed the destinies of Florence from the 15th cent. until 1737.
 D, Monroe S. Foodborne viruses. FEMS FEMS Federation of European Microbiological Societies
FEMS Federation of European Materials Societies
FEMS Fabrication Engineering Management System
FEMS Facility Equipment Maintenance System (PMEL/TMDE) 
 Microbiol Rev 2002;26:187-205.

(3.) Sugieda M, Nagaoka H, Kakishima Y, Ohshita T, Nakamura S, Nakajima S. Detection of Norwalk-like virus Norwalk-like virus Virology Any of a group of viruses with biologic, clinical, and immunologic findings similar to those of the Norwalk agent(s). see Gastroenteritis, Hawaii agent, Norwalk agent(s), Otofuke virus, Snow Mountain virus  genes in the caecum cae·cum
n.
Variant of cecum.



caecum

see cecum.
 contents of pigs. Arch Virol 1998;143:1215-21.

(4.) van Der Poel W, Vinje J, van Der Heide R, Herrera M, Vivo A, Koopmans M. Norwalk-like calicivirus genes in farm animals. Emerg Infect Dis 2000;6:36-41.

(5.) Koopmans M, Vinje J, de Wit M, Leenen I, van der Poel W, van Duynhoven Y. Molecular epidemiology of human enteric caliciviruses in The Netherlands. J Infect Dis 2000;181(Suppl 2):S262-9.

(6.) Noel JS, Fankhauser R, Ando T, Monroe S, Glass R. Identification of a distinct common strain of "Norwalk-like viruses" having a global distribution. J Infect Dis 1999;179:1334-44.

(7.) Mattick KL, Green J, Punia P, Belda F, Gallimore C, Brown D. The heteroduplex mobility assay (HMA (High Memory Area) In PCs, the first 64K of extended memory from 1024K to 1088K, which can be accessed by DOS. It is managed by the HIMEM.SYS driver. It was discovered by accident that this area could be used by DOS, even though it was beyond the traditional ) as a pre-sequencing screen for Norwalk-like viruses. J Virol Methods 2000;87:161-9.

(8.) Maunula L, Piiparinen H, von Bonsdorff C. Confirmation of Norwalk-like virus amplicons after RT-PCR by microplate hybridization and direct sequencing. J Virol Methods 1999;83:125-34.

(9.) Vinje J, Koopmans M. Simultaneous detection and genotyping of "Norwalk-like viruses" by oligonucleotide Oligonucleotide

A deoxyribonucleic acid (DNA) or ribonucleic acid (RNA) sequence composed of two or more covalently linked nucleotides. Oligonucleotides are classified as deoxyribooligonucleotides or ribooligonucleotides.
 array in a reverse line blot hybridization format. J Clin Microbiol 2000;38:2595-601.

(10.) Lopman B, van Duijnhoven Y, Hanon F, Reacher M, Koopmans M, Brown D. Foodborne viruses in Europe: laboratory capability survey, a comparison of national systems. Euro Surveill 2002;7:61-5.

(11.) Vinje J, Vennema H, Maunula L, von Bonsdorff CH, Hoehne M, Schreier E, et al. International collaborative study to compare reverse transcriptase PCR RT-PCR is a one or two-step process for converting RNA to DNA and the subsequent amplification of the reversely-transcribed DNA.

In the first step of RT-PCR, called the “first strand reaction,” complementary DNA (cDNA) is made from an mRNA template using
 assays for detection and genotyping of noroviruses. J Clin Microbial 2003;41:1423-33.

(12.) Vennema H, de Bruin E, Koopmans M. Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase Reverse transcriptase

Any of the deoxyribonucleic acid (DNA) polymerases present in particles of retroviruses which are able to carry out DNA synthesis using an RNA template.
 polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is . J Clin Virol 2002;25:233.

(13.) Lopman B, Reacher M, van Duijnhoven Y, Hanon F, Brown D, Koopmans M. Viral gastroenteritis outbreaks in Europe: 1995-2000. Emerg Infect Dis 2003;9:90-6.

(14.) Kaplan JE, Feldman R, Douglas DS, Campbell S, Lookabaugh C, Gary GW. The frequency of a Norwalk- likes pattem of illness in outbreaks of acute gastroenteritis. Am J Public Health 1982;72:1329-32.

(15.) Powell SC, Attwell R. Appendix B guidelines for confirmation of foodborne-disease outbreaks. MMWR MMWR Morbidity & Mortality Weekly Report Epidemiology A news bulletin published by the CDC, which provides epidemiologic data–eg, statistics on the incidence of AIDS, rabies, rubella, STDs and other communicable diseases, causes of mortality–eg,  Morb Mortal Wkly Rep 2000;49(SS01):54-62.

(16.) Atmar RL, Estes M. Diagnosis of noncultivatable gastroenteritis viruses, the human caliciviruses. Clin Microbiol Rev 2001;14:15-37.

(17.) Hastings L, Burnens A, de Jong De Jong is the most common Dutch surname. Many people bear this name, including many important historical figures. Some of these people are mentioned below.

De Jong may mean:
  • Petrus de Jong, prime minister of the Netherlands from 1967 until 1971
 B, Ward L, Fisher I, Stuart J, et al. Salm-Net facilitates collaborative investigation of an outbreak of Salmonella tosamanga infection in Europe. Commun Dis Rep CDR (1) See CD-R and extension.

(2) (Call Detail Reporting) See call accounting.

(3) (Common Data Rate) A standard sampling rate for digital video for 480i and 576i systems. The rate is 13.5 MHz. See ITU-R BT.
 Rev 1996;6:R100-2.

(18.) Manuguerra JC, Mosnier A, Paget WJ. Monitoring of influenza in the EISS EISS Europäisches Institut für Systemsicherheit
EISS European Informatics Skills Structure
EISS Economic Impact Study System
EISS EUCOM Intelligence Support System
EISS Electronic Integrated Sensor Suite
EISS Extended Incident Stress Syndrome
 Luropean network member countries from October 2000 to April 2001. Euro Surveill 2001;6:127-35.

(19.) Mead PS, Slutsker L, Dietz V, McCaig LF, Bresee JS, Shapiro C, et al. Food-related illness and death in the United States. Emerg Infect Dis 1999;5:607-25.

Dr. Koopmans is a veterinarian veterinarian /vet·er·i·nar·i·an/ (vet?er-i-nar´e-an) a person trained and authorized to practice veterinary medicine and surgery; a doctor of veterinary medicine.

vet·er·i·nar·i·an
n.
 with a Ph.D. in virology. Since 2001, she has chaired the Virology of the Diagnostic Laboratory for Infectious Diseases infectious diseases: see communicable diseases.  of the National Institute of Public Health in the Netherlands, which focuses on reference diagnostics, molecular epidemiology, and outbreak management of a range of emerging diseases. She also is coordinator of the European Union-funded Foodborne Viruses in Europe Network.

Address for correspondence: Marion Koopmans, Research Laboratory for Infectious Diseases, National Institute of Public Health and the Environment, Antonie van Leeuwenhoeklaan 9, 3720BA Bilthoven, the Netherlands; fax: 31.30.2744449; email: marion.koopmans@rivm.nl

Marion Koopmans, * Harry Vennema, * Herre Heersma, * Elisabeth van Strien, * Yvonne van Duynhoven, * David Brown David Brown may refer to any of the following people:
  • David Darnell Brown, an American rapper who goes by the name Young Buck, signed to G-Unit Records.
  • David McDowell Brown (1956–2003), American astronaut
, ([dagger]) Marc Reacher, ([dagger]) and Ben Lopman, ([dagger]) for the European Consortium on Foodborne Viruses (1)

* National Institute of Public Health and the Environment, Bilthoven, the Netherlands; and ([dagger]) Public Health Laboratory Service, London, United Kingdom

(1) The Netherlands: M. Koopmans, H. Vennena, Y. van Duynhoven, D. E. van Strien, W. van de Poel, National Institute of Public Health and the Environment; Bilthoven; Finland: C.-H. von Bonsdorff, L. Maunula, Helsinki University: Denmark: B. Bottiger, K. Molbak, F.X. Hanon, Statens Serum Institute, Copenhagen, Sweden; L. Svensson, K.-O. Hedlund, Maria Thorvag, Juan Carrique-Mas, Swedish Institute The Swedish Institute (Svenska Institutet, SI) is a Swedish government agency with the responsibility to spread information about Sweden abroad, to promote Swedish interests, and to organise exchanges with other countries in different areas of public life, in particular in  for Infectious Disease Infectious disease

A pathological condition spread among biological species. Infectious diseases, although varied in their effects, are always associated with viruses, bacteria, fungi, protozoa, multicellular parasites and aberrant proteins known as prions.
 Control, Solna; UK: D. Brown, M. Reacher, J. Green, B. Lopman, Public Health Laboratory Service, London; Germany: E. Schreier, H. Gelderblom, Andrea Ammon, Robert Koch Institute, Berlin; Spain: A. Sanchez-Faquier, G. Hernandez-Pezzi, Instituto de Salud Carlos III Carlos III may refer to:
  • Charles III of Spain, King of Spain from 1716 to 1788.
  • Universidad Carlos III de Madrid, a Spanish university bearing his name.
, Madrid; A. Bosch, Universitat de Barcelona, Barcelona, J. Buesa, Universitat de Valencia, France: F. LeGuyader, IFREMER IFREMER l'Institut Francais de Recherché Pour l'Exploitation de La Mer (French: French Research Institute for Exploitation of the Sea) , Nantes; P. Pothier E. Kohli, Laboratoire de Virologie, Dijon, Italy: F. Ruggeri, D. DeMedici, Instituo di Superiore di Sanita, Rome. In addition, outside the formal project group, M. Poljsak (Slovenia), and G. Szucs (Hungary) actively participate in the project.
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Title Annotation:Research
Author:Lopman, Ben
Publication:Emerging Infectious Diseases
Geographic Code:4E
Date:Sep 1, 2003
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