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Distribution and characteristics of Escherichia coli clonal group A(1).


Among 1,102 recent Escherichia coil clinical isolates, clonal group A was identified in 17 of 20 (U.S. and non-U.S.) geographic locales, mainly among U.S. isolates (9% vs. 3%; p < 0.001) and those resistant to trimethoprim-sulfamethoxazole (10% vs. 1.7%; p < 0.001). The extensive antimicrobial resistance and virulence profiles of clonal underlie its recent widespread emergence.

The Study

The recently recognized Escherichia coli Escherichia coli (ĕsh'ərĭk`ēə kō`lī), common bacterium that normally inhabits the intestinal tracts of humans and animals, but can cause infection in other parts of the body, especially the urinary tract.  clonal group A (CGA (Color/Graphics Adapter) The first video display standard for the IBM PC. This low-resolution system was superseded by EGA and then VGA. CGA required a digital RGB Color Display monitor. See PC display modes.

CGA - Color Graphics Adapter
) accounts for up to 50% of trimethoprim-sulfamethoxazole (TMP-SMZ--resistant E. coli E. coli: see Escherichia coli.
E. coli
 in full Escherichia coli

Species of bacterium that inhabits the stomach and intestines. E. coli can be transmitted by water, milk, food, or flies and other insects.
 from U.S. women with acute uncomplicated cystitis cystitis (sĭstī`tĭs), common acute or chronic inflammation of the urinary bladder. The disease occurs primarily in young women and frequently results from bacterial invasion of the urethra from the adjacent rectum, most commonly with  and pyelonephritis pyelonephritis: see nephritis.
pyelonephritis

Infection (usually bacterial) and inflammation of kidney tissue and the renal pelvis. Acute pyelonephritis is usually localized and may have no apparent cause.
 (1-3). Available data show CGA to exhibit a stereotypical virulence factor Virulence factors are molecules produced by a pathogen that specifically influence their host's function to allow the pathogen to thrive. Factors that are used in general life processes, such as metabolism or bacterial cell structural components, may be vital to the pathogen's  (VF) profile and a conserved multidrug antimicrobial resistance phenotype, i.e., to ampicillin ampicillin (ăm'pĭsĭl`ĭn), a penicillin-type antibiotic that is effective against both gram-negative microorganisms and gram-positive microorganisms such as Escherichia coli. , chloramphenicol chloramphenicol (klōr'ămfĕn`əkŏl'), antibiotic effective against a wide range of gram-negative and gram-positive bacteria (see Gram's stain). It was originally isolated from a species of Streptomyces bacteria. , streptomycin streptomycin (strĕp'tōmī`sĭn), antibiotic produced by soil bacteria of the genus Streptomyces and active against both gram-positive and gram-negative bacteria (see Gram's stain), including species resistant to other , sulfonamides Sulfonamides Definition

Sulfonamides are medicines that prevent the growth of bacteria in the body.
Purpose

Sulfonamides are used to treat many kinds of infections caused by bacteria and certain other microorganisms.
, tetracycline tetracycline (tĕ'trəsī`klēn), any of a group of antibiotics produced by bacteria of the genus Streptomyces. They are effective against a wide range of Gram positive and Gram negative bacteria, interfering with protein , and trimethoprim trimethoprim /tri·meth·o·prim/ (-meth´o-prim) an antibacterial closely related to pyrimethamine; almost always used in combination with a sulfonamide, primarily for the treatment of urinary tract infections.  (ACSSuTTp), which is conjugally con·ju·gal  
adj.
Of or relating to marriage or the relationship of spouses.



[Latin coniug
 transferable on a large plasmid (1,2). Together with CGA's unusual O antigens (O11, O17, 073, and O77), these findings suggested that CGA represents a newly emerged virulent clonal group (1,2). CGA's homogeneity across geographic locales, and the indistinguishable pulsed-field gel electrophoresis gel electrophoresis
n.
Electrophoresis performed in a gel composed of agarose, polyacrylamide, or starch.
 (PFGE PFGE Pulsed-Field Gel Electrophoresis ) profiles of clustered CGA isolates within 1 community (1), suggested recent and possibly ongoing dissemination, a novel paradigm for extraintestinal pathogenic E. coli (ExPEC) (4).

To date, CGA has been studied only within the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. , predominantly among women with uncomplicated urinary tract infections urinary tract infection (UTI),
n infection in one or more of the structures that make up the urinary system. Occurs more often in women and is most commonly caused by bacteria.
 (UTI UTI urinary tract infection.

UTI
abbr.
urinary tract infection



UTI

urinary tract infection.

UTI Urinary tract infection, see there
). Its occurrence in some locales has been questioned (5), and its antimicrobial susceptibility profile has been assessed for only 12 drugs (1,2,6). Accordingly, we sought to more fully define the global distribution, host range, virulence characteristics, and resistance phenotypes of CGA.

Twenty clinical microbiology Clinical microbiology

The adaptation of microbiological techniques to the study of the etiological agents of infectious disease. Clinical microbiologists determine the nature of infectious disease and test the ability of various antibiotics to inhibit or kill
 laboratories (10 U.S., 10 non-U.S.) each provided approximately 25 consecutive TMP-SMZ-resistant and TMP-SMZ TMP-SMZ Trimethoprim-Sulfamethoxazole (antibiotic)  susceptible E. coli isolates, except for 2 laboratories that provided resistant isolates only (Table 1). Isolates were distributed by specimen type (urine/other) and source (inpatient/outpatient). Antimicrobial drug-resistant and -susceptible isolates were collected approximately concurrently during 2001 from each site, except London (1999) (7) and Columbus (1999 and 2002). When available, data regarding specimen type and host gender, age, and inpatient/outpatient status were provided.

Phylogenetic phy·lo·ge·net·ic
adj.
1. Of or relating to phylogeny or phylogenetics.

2. Relating to or based on evolutionary development or history.
 group (A, B1, B2, or D) was defined by triplex triplex /tri·plex/ (tri´pleks) triple or threefold.

triplex

triple or threefold.
 polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  (PCR PCR polymerase chain reaction.

PCR
abbr.
polymerase chain reaction


Polymerase chain reaction (PCR) 
) (8). Group D isolates were defined as CGA if by random amplified polymorphic polymorphic - polymorphism  DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 (RAPD RAPD Randomly Amplified Polymorphic DNA
RAPD relative afferent pupillary defect (ophthalmology; aka Marcus-Gunn Pupil) 
) analysis they resembled CGA controls with primers 1254 and 1290, or with one of these plus [greater than or equal to] 2 of primers 1247, 1281, or 1283 (2). PFGE analysis used XbaI (1).

CGA isolates and (2:1) geographically matched controls selected randomly based on the local TMP-SMZ resistance prevalence were tested for 35 ExPEC-associated virulence markers and 13 papA alleles by PCR (2). Such typing predicts experimental in vivo in vivo /in vi·vo/ (ve´vo) [L.] within the living body.

in vi·vo
adj.
Within a living organism.



in vivo adv.
 virulence (9). Isolates were defined as ExPEC if positive for [greater than or equal to] 2 of papA and/or papC, sfa/foc, afa/dra, iutA, and kpsM (10). The aggregate virulence score was the number of different virulence markers detected in an isolate, adjusted for multiple detection of certain operons.

O typing was carried out by the E. coli Reference Center (University Park, PA). O antigens O1, 02, 04, 06, 07, 016, 018, 025, and 075 were considered UTI-associated (O-UTI) (10).

Susceptibility testing of the isolates to 30 drugs was carried out by broth microdilution (11) or disk diffusion (nitrofurantoin nitrofurantoin /ni·tro·fu·ran·to·in/ (-fu-ran´to-in) an antibacterial effective against many gram-negative and gram-positive organisms; used in urinary tract infections.

ni·tro·fur·an·to·in
n.
) (11), by using E. coli ATCC ATCC American Type Culture Collection, see there  25299 for reference and National Committee for Clinical Laboratory Standards (NCCLS NCCLS National Committee for Clinical Laboratory Standards )--specified interpretative criteria (12), except for kanamycin kanamycin /kan·a·my·cin/ (kan?ah-mi´sin) an aminoglycoside antibiotic derived from Streptomyces kanamyceticus, effective against aerobic gram-negative bacilli and some gram-positive bacteria, including mycobacteria; used as the , spectinomycin spectinomycin /spec·ti·no·my·cin/ (spek?ti-no-mi´sin) an antibiotic derived from Streptomyces spectabilis, used as the hydrochloride salt in the treatment of gonorrhea. , and streptomycin (resistant at MICs of [greater than or equal to] 25 mg/L, [greater than or equal to] 128 mg/L, and [greater than or equal to] 8 mg/L, respectively). The aggregate resistance score was the number of different agents to which an isolate exhibited resistance.

Statistical analysis used a Fisher exact or a chi-square test chi-square test: see statistics.  for comparisons of proportions and the Mann-Whitney U test Mann-Whitney U test,
n.pr See test, Mann-Whitney U.
 for comparisons of scores. Multiple variables were assessed as predictors of selected outcomes by multivariate logistic regression In statistics, logistic regression is a regression model for binomially distributed response/dependent variables. It is useful for modeling the probability of an event occurring as a function of other factors.  or multiple linear regression Linear regression

A statistical technique for fitting a straight line to a set of data points.
.

The 1,102 clinical E. coli isolates were divided evenly by U.S. and non-U.S. origin and TMP-SMZ resistance stares (Table 2). Overall, phylogenetic group B2 predominated (44%), followed by group D (27%). Group D was significantly more prevalent among U.S. than non-U.S. isolates (34% vs. 21%: p < 0.001). TMP-SMZ-resistant isolates exhibited significant shifts from group B2 toward groups A, D, or both. The nearly 2-fold greater prevalence of group D among TMP-SMZ-resistant isolates reversed, for U.S. isolates, the "B2 > D" pattern of susceptible isolates.

By RAPD analysis, 23% of group D isolates (6% overall) represented CGA (Table 2). CGA was strongly associated with TMP-SMZ resistance (10% of resistant isolates, 1.7% of susceptible: p < 0.001) and a U.S. origin (9% vs. 3%: p < 0.001). CGA accounted for 15% of U.S. TMP-SMZ--resistant isolates and 5% of those from abroad (p < 0.001), but for a similarly low proportion of U.S. (2%) and non-U.S. (1.5%) susceptible isolates. According to multivariate logistic regression analysis, after accounting for TMP-SMZ resistance and U.S. origin, none of the other source variables (specimen type and host gender, age, and inpatient/outpatient status) was significantly associated with CGA status or appreciably altered the association of TMP-SMZ resistance or U.S. origin with CGA status (not shown).

CGA occurred in all but 3 locales (1-10 isolates per locale), accounting for up to 29% of local resistant isolates (median, 9.5%) (Table l). CGA was highly prevalent (20%-25%) among resistant isolates from the 3 pediatric pediatric /pe·di·at·ric/ (pe?de-at´rik) pertaining to the health of children.

pe·di·at·ric
adj.
Of or relating to pediatrics.
 centers (Columbus, Houston, and Toulouse) and the veterans' hospital (Tucson). Toulouse exhibited the highest non-U.S. CGA prevalence, whereas nearby Brest lacked CGA (Table 1). CGA accounted for 29% of the ostensibly os·ten·si·ble  
adj.
Represented or appearing as such; ostensive: His ostensible purpose was charity, but his real goal was popularity.
 nonclonal (5) TMP-SMZ-resistant isolates from Chicago. Consistent with this, XbaI PFGE profiles of 6 Chicago and 2 reference CGA isolates were highly similar (Figure 1).

[FIGURE 1 OMITTED]

CGA isolates differed significantly from controls, according to almost all characteristics analyzed; they were significantly enriched with the O11, O17, and 077 antigens, certain VFs (F16 papA allele allele (əlēl`): see genetics.
allele

Any one of two or more alternative forms of a gene that may occur alternatively at a given site on a chromosome.
, papAHCEFG, papG allele II, iha, iutA, kpsM II, traT, and ompT), and ExPEC status, but lacked other traits (Figure 2). Aggregate virulence scores were similar for CGA and controls (medians, 8.0) but were less diverse for CGA (range 5-9, vs. 1-13).

[FIGURE 2 OMITTED]

By multivariate logistic regression, both CGA status and phylogenetic group B2 were significant independent predictors of ExPEC status, with CGA exhibiting an odds ratio (OR) of 21.9 (95% confidence interval confidence interval,
n a statistical device used to determine the range within which an acceptable datum would fall. Confidence intervals are usually expressed in percentages, typically 95% or 99%.
 [CI], 6.1-78.2; p < 0.001), and group B2 an OR of 2.4 (CI, 1.7-3.4; p < 0.001). Additionally, by multiple linear regression, CGA status (standardized regression coefficient Regression coefficient

Term yielded by regression analysis that indicates the sensitivity of the dependent variable to a particular independent variable. See: Parameter.


regression coefficient 
 [beta] = 0.57; p < 0.001) and group B2 status ([beta] = 0.596; p < 0.001) predicted VF score better than did O-UTI ([beta] = 0.32; p = 0.002).

Antimicrobial resistance phenotypes were compared between CGA isolates and a subset of the controls, which had been selected to provide an unbiased distribution of TMP-SMZ resistance (Figure 2). CGA exhibited a higher prevalence of resistance to 10 individual drugs, any drug, and ACSSuTTp, whereas controls exhibited a low but measurable prevalence of resistance to 7 drugs to which all CGA isolates were susceptible. Accordingly, resistance scores were significantly higher for CGA than controls (median 8.0 [range 1-11] vs. 5.5 [range 0-15]; p = 0.001). Among TMP-SMZ-resistant isolates, TMP-SMZ MICs ranged from 32/608 mg/L to >520/9,880 rag/L; 61% of resistant isolates had MICs [greater than or equal to] 520/9,880 mg/L. CGA accounted for 67% of this highly resistant population (p = 0.01 vs. controls).

The U.S. and non-U.S. CGA isolates exhibited only 2 statistically significant differences for VF profiles, O antigens, and resistance phenotypes, with iroN (p = 0.03) and absence of ompT (p = 0.008) associated with non-U.S. isolates.

Conclusions

We found that the recently described E. coli CGA is globally but heterogeneously distributed and more prevalent within the United States than abroad. Clonal group A affects diverse host populations (including inpatients, outpatients, adults, children, men, and women), infects urinary tract and nonurinary tract sites, is strongly associated with TMP-SMZ resistance (particularly high-level resistance), and exhibits a robust virulence profile suggesting enhanced extraintestinal virulence. This combination of resistance and virulence may account for CGA's recent emergence as a broadly disseminated "epidemic clone" (1-3,6,13,14).

The greater overall prevalence of CGA within the United States suggests a U.S. origin for CGA. However, it also could reflect more rapid clonal expansion within the United States due to enhanced dissemination or more favorable conditions for outgrowth, including possibly less competition from other potential occupants of the same niche(s). The variable prevalence of CGA among even closely situated locales, both within the United States and abroad, might reflect true geographic heterogeneity, versus locale-specific differences in patient populations, selection criteria, and collection intervals. Studies that compare well-defined, homogeneous, concurrent populations from different locales are needed.

The new evidence of CGA as a prominent TMP-SMZ-resistant pathogen among children and veterans extends the0 known host range of CGA, consistent with a recent report of CGA as a community-wide TMP-SMZ-resistant pathogen in Denver, Colorado (6). This finding illustrates CGA's pathogenic versatility.

That 29% of the TMP-SMZ-resistant isolates from Chicago, Illinois, proved to be CGA and resembled reference CGA isolates by PFGE, despite a previous PFGEbased assessment of nonclonality (5), illustrates the limitations of conventional PFGE analysis as a screen for CGA. We have developed a CGA-specific PCR assay, based on a single nucleotide polymorphism Noun 1. single nucleotide polymorphism - (genetics) genetic variation in a DNA sequence that occurs when a single nucleotide in a genome is altered; SNPs are usually considered to be point mutations that have been evolutionarily successful enough to recur in a  within fumC, to provide improved screening for CGA (15).

CGA's robust, highly homogeneous consensus VF profile (F16 papA allele, papG allele II, iutA, kpsM II, traT, and ompT) suggests considerable extraintestinal virulence potential, an inference supported by experimental data indicating that CGA is able to compete successfully with classic group B2-derived pathogens in a mouse UTI model (J.R. Johnson, unpub, data). Determination of which VFs of CGA contribute most to pathogenicity may identify future targets for preventive interventions.

In our study, antimicrobial resistance was more extensive and, with TMP-SMZ, more potent for CGA than controls. These factors may be contributing to CGA's global emergence. Conceivably, high-level TMP-SMZ resistance could allow CGA to out-compete even other TMP-SMZ resistant strains. CGA's resistance involved primarily older agents, whereas fluoroquinolone fluoroquinolone /flu·o·ro·quin·o·lone/ (-kwin´o-lon) any of a subgroup of fluorine-substituted quinolones, having a broader spectrum of activity than nalidixic acid.

fluor·o·quin·o·lone
n.
 and cephalosporin cephalosporin (sĕf'əlōspôr`ĭn), any of a group of more than 20 antibiotics derived from species of fungi of the genus Cephalosporium and closely related chemically to penicillin. Cephalosporins, e.g.  resistance was confined to controls. However, the emergence of fluoroquinolone resistance within the closely related O15:K52:H1 clonal group (2,13) suggests that this potential exists also for CGA.

The study's strengths include large population, broad geographic sampling, matching of CGA and control isolates, and extensive range of traits analyzed. Limitations include the heterogeneous inclusion criteria, gaps in global surveillance, possible type I errors from multiple comparisons, and limited sampling per locale.

In summary, we found CGA to be a globally disseminated, multidrug-resistant clonal group of pathogenic E. coli with a broad range of human hosts. Although more prevalent within the United States than abroad, CGA exhibits characteristic O antigens, resistance markers, and virulence traits wherever encountered. Further study is needed of the origins, virulence mechanisms, geographic distribution, clinical associations, and modes of dissemination of CQA CQA Certified Quality Auditor
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.
Table 1. Sources of Escherichia coliclinical isolates and local
prevalence of E. coliclonal group A (CGA) by
trimethoprim-sulfamethoxazole (TMP-SMZ) phenotype *

                                                            I/P or
Location and                    Patient       Specimen       O/P
  type of institution         population      type(s)     ([dagger])

Curitiba, Brazil             Mostly adults     Urine         Unk
  University medical center
Montreal, Canada             Mostly adults  Urine, other   I/P, O/P
  University medical center
London, England              Mostly adults     Urine         Unk
  Teaching hospital
Brest, France                Mostly adults  Urine, blood   I/P, O/P
  University medical center
Toulouse, France               Children     Urine, other   I/P, O/P
  Children's hospital
Milnich, Germany             Mostly adults    Unknown        Unk
  University medical center
Afula, Israel                    Women         Urine         O/P
  Outpatient clinic
Barcelona, Spain             Mostly adults  Urine, other   I/P, O/P
  Private medical center
Goteborg, Sweden             Mostly adults    Unknown        Unk
  University medical center
Bangkok, Thailand               Adults      Urine, other   VP, O/P
  Government hospital

Baltimore, MD, USA           Mostly women      Urine         O/P
  Student health center
Billings, MT, USA            Mostly adults  Urine, other   I/P, O/P
  Private medical center
Birmingham, AL, USA          Mostly adults  Urine, other   I/P, O/P
  University medical center
Chicago, IL, USA             Mostly adults     Urine         O/P
  County medical center
Columbus, OH, USA              Children        Urine       I/P, O/P
  University medical center
Iowa City, IA, USA              Unknown     Urine, other     Unk
  (Multiple)
Houston, TX, USA               Children     Urine, other   I/P, O/P
  Children's medical center
Rochester, MN, USA           Mostly adults  Urine, other   I/P, O/P
  Private medical center
Seattle, WA, USA                Adults        Unknown        Unk
  Teaching hospital
Tucson, AZ, USA                   Men         Unknown        Unk
  Veterans' medical center

                                 Local
                                TMP-SMZ
Location and                  resistance     Total no.
  type of institution          rate (%)       isolates

Curitiba, Brazil                  33             60
  University medical center
Montreal, Canada                  33             50
  University medical center
London, England                   29             46
  Teaching hospital
Brest, France                     30             59
  University medical center
Toulouse, France                  24             50
  Children's hospital
Milnich, Germany                  24             55
  University medical center
Afula, Israel                     30            100
  Outpatient clinic
Barcelona, Spain                  37             74
  Private medical center
Goteborg, Sweden                  10             48
  University medical center
Bangkok, Thailand                 67             48
  Government hospital

Baltimore, MD, USA                29             62
  Student health center
Billings, MT, USA                 11             50
  Private medical center
Birmingham, AL, USA               18             48
  University medical center
Chicago, IL, USA                  24             24
  County medical center
Columbus, OH, USA                 13             59
  University medical center
Iowa City, IA, USA                18             58
  (Multiple)
Houston, TX, USA                  36             60
  Children's medical center
Rochester, MN, USA                16             54
  Private medical center
Seattle, WA, USA                  15             50
  Teaching hospital
Tucson, AZ, USA                   25             47
  Veterans' medical center

                                   Prevalence of CGA,
                                     proportion (%)
                                   ([double dagger])

Location and                   TMP-SMZ-       TMP-SMZ-
  type of institution         susceptible   resistant     p value

Curitiba, Brazil               1/30 (3)     2/30 (7)
  University medical center
Montreal, Canada               0/25 (0)     0/25 (0)
  University medical center
London, England                  n.a.       0/46 (0)
  Teaching hospital
Brest, France                  0/29 (0)     0/30 (0)
  University medical center
Toulouse, France               0/25 (0)     5/25 (20)     0.05
  Children's hospital
Milnich, Germany               0/27 (0)     2/28 (14)
  University medical center
Afula, Israel                  1/51 (2)     3/49 (6)
  Outpatient clinic
Barcelona, Spain               2/30 (7)     0/44 (0)
  Private medical center
Goteborg, Sweden               0/25 (0)     1/23 (4)
  University medical center
Bangkok, Thailand              0/24 (0)     1/24 (4)
  Government hospital

Baltimore, MD, USA             2/24 (8)     7/38 (18)
  Student health center
Billings, MT, USA              0/25 (0)     3/25 (12)
  Private medical center
Birmingham, AL, USA            1/23 (4)     1/25 (4)
  University medical center
Chicago, IL, USA                  NA        7/24 (29)
  County medical center
Columbus, OH, USA              0/33 (0)     6/26 (23)     0.005
  University medical center
Iowa City, IA, USA             0/27 (0)     4/31 (13)
  (Multiple)
Houston, TX, USA               1/32 (3)     7/28 (25)     0.02
  Children's medical center
Rochester, MN, USA             1/28 (4)     0/26 (0)
  Private medical center
Seattle, WA, USA               0/24 (0)     6/26 (23)     0.02
  Teaching hospital
Tucson, AZ, USA                0/34 (0)     2/13 (15)
  Veterans' medical center

* Isolates were collected in 2001 for all sites except London, England
(1999), and Columbus, OH, USA (1999 for susceptible isolates and part
of resistant isolates; 2002 for remaining resistant isolates).

([dagger]) I/P, inpatient; O/P, outpatient; Unk, unknown.

([double dagger]) Eighteen centers contributed both susceptible and
resistant isolates (total, 47 to 100 isolates each; median, 55). Two
centers contributed only resistant isolates (Chicago, IL, USA: 24
isolates; London, England: 46 isolates). Specimen type was known for 55
of the CGA isolates and was urine for 42, nonurine for 13 (10 blood, 1
tracheal aspirate, 1 fecal, 1 unspecified nonurine).

Table 2. Prevalence of phylogenetic groups and Escherichia coli clonal
group A (CGA) according to locale and resistance phenotype

Prevalence of indicated E. coli group by locale and TMP-SMZ *
phenotype, no. (column %)

                           Total (N = 1,102)
E. coli                                                p value
group                     Susceptible    Resistant     ([double
([dagger])    Overall      (n = 516)     (n = 586)     dagger])

ECOR A       168 (15)       65 (13)       103 (18)       0.02
ECOR B1      143 (13)       70 (14        73 (12)         NS
ECOR B2      483 (44)      277 (54)       210 (35)      <0.001
            ([section])   ([section])
ECOR D       298 (27)      98 (19)        200 (34)      <0.001
            ([section])   ([section])

CGA           68 (6)        9 (1.7)       59 (10)       <0.001

                         United States (N = 512)
E. coli
group                     Susceptible    Resistant     p value
([dagger])    Overall      (n = 250)     (n = 262)    ([dagger])

ECOR A        63 (12)       28 (11)       35 (13)         NS
ECOR B1       59 (12)       27 (11)       32 (12)         NS
ECOR B2      213 (42)      134 (54)       79 (30)       <0.001
                          ([section])   ([section])
ECOR D       176 (34)      60 (24)       116 (44)       <0.001
                          ([section])   ([section])
                         ([paragraph])      (#)
CGA           48 (9)         5 (2)        43 (16)       <0.001

                         Non-United States (N = 590)
E. coli
group                     Susceptible    Resistant     p value
([dagger])    Overall      (n = 266)     (n = 324)    ([dagger])

ECOR A       105 (18)       37 (14)       68 (21)        0.03
ECOR B1       84 (14)       43 (16)       41 (13)         NS
ECOR B2      270 (46)      143 (54)      127 (39)       <0.001
                          ([section])   ([section])
ECOR D       122 (21)      38 (14)        84 (26)       0.001
                         ([section])    ([section])
                         ([paragraph])       (#)
CGA          20 (3.4)       4 (1.5)        16 (5)        0.02

* ECOR, E. coli reference

([dagger]) TMP-SMZ, trimethoprim-sulfamethoxazole.

([double dagger]) p values (by Fisher exact test) for comparison of
susceptible and resistant isolates are shown when <0.05. NS, not
significant.

([section]) For prevalence of group B2 (versus group D) within same
column; p [less than or equal to] 0.01, McNemar's test.

([paragraph]) For prevalence of group D among U.S. (vs. non-U.S.)
susceptible isolates; p = 0.005 (Fisher exact test).

(#) For prevalence of group D among U.S. (vs. non-U.S.) resistant
isolates; p < 0.001 (Fisher exact test).


Acknowledgments

We thank Dave Prentiss for preparing the figures; Sheldon Finver, Abby Gajewski, and Timothy T. O'Bryan for invaluable laboratory assistance; the clinical microbiology laboratory of the Minneapolis VA Medical Center for assisting with antimicrobial susceptibility testing; and Amee Manges and Lee Riley for providing strain SEQ SEQ Sequence
SEQ Sequential
SEQ South East Queensland (Australia)
SEQ Smart Equities Conference
SEQ Sequens/Sequentes
SEQ Senior Enlisted Quarters
SEQ Short Essay Question
SEQ Stigmatisation and Eczema Questionnaire
SEQ Scientific Equipment
102.

This material is based upon work supported by Office of Research and Development, Medical Research Service, Department of Veterans Affairs, and by Bayer Inc., Merck, and Procter & Gamble (J.R.J.). J.R.J. has received grants, honoraria, or both, from Bayer, Merck, Ortho-McNeill, Procter and Gamble, and Wyeth-Ayerst.

References

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(2.) Johnson JR, Manges AR, O'Bryan TT, Riley LR. A disseminated multi-drug resistant clonal group of extraintestinal pathogenic Escherichia coli as a cause of pyelonephritis. Lancet. 2002;359:2249-51.

(3.) Manges AR, Dietrich PS, Riley LW. Multidrug-resistant Escherichia coli clonal groups causing community-acquired pyelonephritis. Clin Infect Dis. 2004;38:329-34.

(4.) Stature WE. An epidemic of urinary tract infections? N Engl J Med. 2001;345:1055-7.

(5.) Petrof EO, Schwartz DN, Quinnn JP. Urinary tract infections and a nmltidrug-resistant Escherichia coli clonal group [letter]. N Engl J Med. 2002;346:535.

(6.) Burman WJ, Breese PE, Murray BE, Singh KV, Batal HA, MacKenzie TA, et al. Conventional and molecular epidemiology molecular epidemiology Molecular medicine An evolving field that combines the tools of standard epidemiology–case studies, questionnaires and monitoring of exposure to external factors with the tools of molecular biology–eg, restriction endonucleases,  of trimethoprim-sulfamethoxazole resistance among urinary Escherichia coli isolates. Am J Med.2003;115:358-64.

(7.) Enne VI, Livermore DM, Stephens P, Hall LCM (Liquid Crystal Monitor) A flat panel display that uses the liquid crystal (LCD) technology. See flat panel display. . Persistence of sulphonamide sulphonamide or US sulfonamide
Noun

Pharmacol any of a class of organic compounds that prevent the growth of bacteria
 resistance in Escherichia coli in the UK despite national prescribing restriction. Lancet. 2001;357:1325-8.

(8.) Clermont O, Bonacorsi S, Bingen E. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl Environ Microbiol. 2000;66:4555-8.

(9.) Johnson JR, Kuskowski M, Denamur E, Elion J, Picard B. Clonal origin, virulence factors, and virulence [letter and reply]. Infect Immun. 2000;68:424-5.

(10.) Johnson JR, Murray AC, Gajewski A, Sullivan M, Shippes P, Kuskowski MA, et al. Isolation and molecular characterization of nalidixic acid-resistant cxtraintestinal pathogenic Escherichia coli from retail chicken products. Antimicrob Agents Chemother. 2003;47:2161-8.

(11.) National Committee for Clinical Laboratory Standards. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically, 6th ed. Vol. 23, no. 2. M7-A6. Wayne (PA): The Committee; 2003.

(12.) National Committee for Clinical Laboratory Standards. Performance standards for antimicrobial susceptibility testing; fourteenth informational supplement. Vol. 24, no. 1. M100-S14. Wayne (PA): The Committee; 2004.

(13.) Johnson JR, Kuskowski MA, Owens K, Gajewski A, Winokur PL. Phylogenetic origin and virulence genotype in relation to resistance to fluoroquinolones and/or extended spectrum cephalosporins Cephalosporins Definition

Cephalosporins are medicines that kill bacteria or prevent their growth.
Purpose

Cephalosporins are used to treat infections in different parts of the body—the ears, nose, throat, lungs, sinuses, and
 and cephamycins among Escherichia coli isolates from animals and humans. J Infect Dis. 2003;188:759-68.

(14.) Johnson JR, Russo TA. "Uropathogenic" Escherichia coil as agents of diverse non-urinary-tract extraintestinal infections. J Infect Dis. 2002;186:859-64.

(15.) Johnson JR, Owens, Manges A, Riley L. Rapid and specific detection of Escherichia coli clonal group A by gene-specific PCR. J Clin Microbiol. 2004;42:2618-22.

James R. Johnson, * ([dagger]) Andrew C. Murray, * ([dagger]) Michael A. Kuskowski, * ([dagger]) Soren Schubert, ([double dagger]) Marie-Francoise Prere, ([sections]) Bertrand Picard, ([paragraph]) Raul Colodner, (#) Raul Raz, (#) ** and the Trans-Global Initiative for Antimicrobial Resistance Analysis (TIARA) Investigators (2)

* VA Medical Center, Minneapolis, Minnesota, USA; ([dagger]) University of Minnesota (body, education) University of Minnesota - The home of Gopher.

http://umn.edu/.

Address: Minneapolis, Minnesota, USA.
, Minneapolis, Minnesota, USA; ([double dagger]) Max von Pettenkofer-Institut fur Hygiene und Medizinische Mikrobiologie, Munchen, Germany; ([sections]) Centre Hospitalier Universitaire Purpan, Toulouse, France; ([paragraph]) Hopital Morvan, Brest, France; (#) HaEmek Medical Center, Afula, Israel; and ** Technion School of Medicine, Afula, Israel

(1) Presented in part at the American Society for Microbiology The American Society for Microbiology (ASM) is a scientific organization, based in the United States although with over 43,000 members throughout the world. It is the largest single life science professional organization and its members include those whose interests encompass basic  103rd General Meeting, May 18-22, 2003, Washington, D.C.

(2) The TIARA investigators include the following: Sacared Bodison (University of Maryland, College Park The University of Maryland, College Park (also known as UM, UMD, or UMCP) is a public university located in the city of College Park, in Prince George's County, Maryland, just outside Washington, D.C., in the United States. , MD), Franklin R. Cockerill, III (Mayo Clinic and Mayo Medical School Mayo Medical School is a part of the Mayo Clinic in Rochester, Minnesota. It grants degrees in medicine, and is accredited by the North Central Association of Colleges and Schools. , Rochester, MN), Clovis Arns da Cunha (Curitiba-PR, Brazil), Peter Echeverria and Sriluck Simasathien (Armed Forces Research Institute of Medical Sciences and Phramonkutkho Army Hospital, Bangkok, Thailand), Wim Gaastra (University of Utrecht, Utrecht, The Netherlands), Lucinda M.C. Hall (St Bartholomew's and the Royal London School of Medicine and Dentistry, London, UK), Marina Klein (McGill University Health Centre The McGill University Health Centre (MUHC) (in French, Centre universitaire de santé McGill) is a network of five teaching hospitals in Montreal, Quebec, Canada, all of which are affiliated with McGill University. , Montreal, Quebec, Canada), Hank A. Lockman (Battelle Memorial Institute The Battelle Memorial Institute is a private not-for-profit applied science and technology development company headquartered in Columbus, Ohio. The institute opened in 1929 but traces its origins to the 1923 will of Ohio industrialist Gordon Battelle which provided for its , Columbus, OH), Imad Omer and Jane R. Schwebke (University of Alabama The University of Alabama (also known as Alabama, UA or colloquially as 'Bama) is a public coeducational university located in Tuscaloosa, Alabama, USA. Founded in 1831, UA is the flagship campus of the University of Alabama System. , Birmingham, AL), Guillem Prats (Hospital Vail d'Hebron, Barcelona, Spain), Robed M. Rakita (Virginia Mason Medical Center Virginia Mason Medical Center (VMMC), founded in 1920, is a private, non-profit organization located on Seattle, Washington's First Hill offering a system of integrated health services. Gary S. Kaplan, MD, serves as chairman and CEO, and J. , Seattle, WA), Susan Rossman (Texas Childrens Hospital, Houston, TX), Ronald Schifman (Southern Arizona VA Medical Center, Tucson, AZ), Ronald Smith (Billings Clinic and Providence Medical Center, Billings, MT), and Patricia L. Winokur (VA Medical Center and University of Iowa Not to be confused with Iowa State University.
The first faculty offered instruction at the University in March 1855 to students in the Old Mechanics Building, situated where Seashore Hall is now. In September 1855, the student body numbered 124, of which, 41 were women.
, Iowa City, IA).

Address for correspondence: James R. Johnson, Infectious Diseases (111F), Minneapolis VA Medical Center, 1 Veterans Drive, Minneapolis, MN 55417, USA; fax: 612-727-5995, email: johns007@umn.edu

Dr. Johnson is professor of medicine and director of the Infectious Diseases Fellowship Program at the University of Minnesota, and head of the molecular epidemiology laboratory at the Minneapolis VA Medical Center. His research focuses on the molecular epidemiology, ecology, evolution, and virulence of extraintestinal pathogenic and antimicrobial-resistant E. coli.
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Title Annotation:Dispatches
Author:Raz, Raul
Publication:Emerging Infectious Diseases
Geographic Code:1USA
Date:Jan 1, 2005
Words:3809
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