Detecting hepatitis B surface antigen mutants.Hepatitis B Hepatitis B Definition Hepatitis B is a potentially serious form of liver inflammation due to infection by the hepatitis B virus (HBV). It occurs in both rapidly developing (acute) and long-lasting (chronic) forms, and is one of the most common chronic viral mutants can emerge in patients as a result of selection pressure from either immune response immune response n. An integrated bodily response to an antigen, especially one mediated by lymphocytes and involving recognition of antigens by specific antibodies or previously sensitized lymphocytes. or treatment options. Mutations that occur within the immunodominant epitopes of hepatitis B surface antigen hepatitis B surface antigen n. Abbr. HBsAg An antigen derived from the surface of the hepatitis B virus that is present in the blood in active hepatitis B infection. Also called Australia antigen. (HBsAg) allow mutant virus to propagate in the presence of a neutralizing immune response, while wild-type virus is reduced to undetectable levels. HBsAg mutants present as false-negative results in some immunoassays. An understanding of immunoassay Immunoassay An assay that quantifies antigen or antibody by immunochemical means. The antigen can be a relatively simple substance such as a drug, or a complex one such as a protein or a virus. reactivity with HBsAg mutants is key to establishing an appropriate testing algorithm for hepatitis B virus detection programs. ********** Over the past decade, the importance of hepatitis B virus (HBV HBV hepatitis B virus. HBV abbr. hepatitis B virus ) mutants has made a transition from an academic phenomenon of unknown prevalence to a factor for consideration during disease diagnosis. HBV infection has a major effect on world health care: more than one third of the world's population has been infected at some point; [approximately equal to] 350 million people are currently infected (1). This immense worldwide reservoir of infection serves as the basis for the generation of HBV mutants because of the unique molecular biology molecular biology, scientific study of the molecular basis of life processes, including cellular respiration, excretion, and reproduction. The term molecular biology was coined in 1938 by Warren Weaver, then director of the natural sciences program at the Rockefeller of this virus. Since the late 1980s, we have seen the emergence of mutants across the entire HBV genome as the virus responds to selective pressures, such as vaccination and antiviral therapy This article is about the biomedical journal. For therapy with antiviral agents, see antiviral drug. Antiviral Therapy is an academic journal published by International Medical Press, London, UK (a subsidiary of MediTech Media). . Viral adaptation through mutation will continue as new treatment options are employed and current treatment options are expanded into areas of endemic infection. HBV mutant surveillance and understanding of HBV mutant impact on disease diagnosis will pose a challenge to global health care for the foreseeable future. Thus, diagnosticians and the healthcare industry need to increase their awareness of HBV mutants and how these mutants may alter current diagnostic and treatment algorithms. This article addresses recent information concerning the emergence of hepatitis B surface antigen (HBsAg) mutants, their impact on viral antigen viral antigen n. Abbr. VA An antigen with multiple antigenicities that is protein in nature, strain-specific, and closely associated with the virus particle. presentation, latest prevalence data, and discussion of the issues associated with detection of mutants in healthcare settings. Mechanism of HBV Mutant Generation HBV belongs te the genus Orthohepadnavirus, family Hepadnaviridae. This virus has a small circular DNA Circular DNA is a form of DNA that is found in bacteria and archaea. While the individual strands of a linear double helix represent two distinct and separable molecules, this need not be true for circular DNA. genome, [approximately equal to]3.2 kb in length, that contains 4 genes with partially overlapping open reading frames (ORFs). These ORFs encode the polymerase protein (Pol gene pol gene a gene which encodes reverse transcriptase, found in the retroviral genome. ); core antigen and e antigen (C gene); large, medium, and small surface-antigen proteins (S gene); and the X protein (X gene). From a relatively small genome, these overlapping ORFs generate 7 proteins. While this gene overlap may constrain some viral variability, mutant or variant forms have been identified for all 4 genes (2). HBV analysis has transitioned from the serologic se·rol·o·gy n. pl. se·rol·o·gies 1. The science that deals with the properties and reactions of serums, especially blood serum. 2. subtype (programming) subtype - If S is a subtype of T then an expression of type S may be used anywhere that one of type T can and an implicit type conversion will be applied to convert it to type T. classification of the early 1970s to the more precise genotype genetic classification. HBV has been classified into 8 genotypes (A-H) on the basis of intergenotypic difference of >8% in the entire nucleotide sequence (3). HBV genotypes demonstrate geographic diversity. However, distinct genotypes have evolved in more remote areas, as evidenced by genotype E, localized in Madagascar, and genotype F, localized in South America South America, fourth largest continent (1991 est. pop. 299,150,000), c.6,880,000 sq mi (17,819,000 sq km), the southern of the two continents of the Western Hemisphere. . This diversity of the HBV genome is generated by the same mechanism that drives the emergence of mutants, replication. The replication of HBV DNA DNA: see nucleic acid. DNA or deoxyribonucleic acid One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes. proceeds through a RNA RNA: see nucleic acid. RNA in full ribonucleic acid One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic reverse transcriptase Reverse transcriptase Any of the deoxyribonucleic acid (DNA) polymerases present in particles of retroviruses which are able to carry out DNA synthesis using an RNA template. intermediary step. HBV variants are generated during this process. Since the reverse transcriptase activity of the HBV polymerase protein lacks a proofreading Proofreading traditionally means reading a proof copy of a text in order to detect and correct any errors. Modern proofreading often requires reading copy at earlier stages as well. function, random mis-incorporation of bases into the replicating DNA strand occurs. This mismatch leads to the generation of multiple variant transcripts from a single template and the formation of a quasispecies pool (4). This quasispecies pool provides the source material for the emergence of a mutant when selection pressure is applied (5). A mutation selected for in 1 gene can potentially lead to an amino acid amino acid (əmē`nō), any one of a class of simple organic compounds containing carbon, hydrogen, oxygen, nitrogen, and in certain cases sulfur. These compounds are the building blocks of proteins. change in the overlapping reading frame. Replication of the hepatitis B virion virion Entire virus particle, consisting of an outer protein shell (called a capsid) and an inner core of nucleic acid (either RNA or DNA). The core gives the virus infectivity, and the capsid provides specificity (i.e., determines which organisms the virus can infect). is, therefore, the sole requirement for generating these nucleotide mismatch sequences. The number of viral particles generated in some infected persons can be as high as [10.sup.11] viral particles per day. Because of the polymerase reverse transcription reverse transcription n. The process by which DNA is synthesized from an RNA template. error rate (1 error per [10.sup.7] bases), in active infection, [10.sup.7] base-pairing errors can be generated per day over the 3,200-bp genome (6). While most of these new sequences are nonviable nonviable /non·vi·a·ble/ (-vi´ah-b'l) not capable of living. non·vi·a·ble adj. Not capable of living or developing independently. Used especially of an embryo or fetus. or fail to effectively compete with wild-type virus, they provide a starting point Noun 1. starting point - earliest limiting point terminus a quo commencement, get-go, offset, outset, showtime, starting time, beginning, start, kickoff, first - the time at which something is supposed to begin; "they got an early start"; "she knew from the for the emergence of mutants when selection pressure is applied. HBV mutants can be expected to emerge in any geographic area where populations of infected persons are exposed to a selective pressure. New treatment regimens developed over the past 2 decades have successfully reduced overall HBV infection rates, but they have also exerted powerful selection pressures for the emergence of HBV mutants. Treatments that have selected for mutants include immunotherapy (vaccination, administration of HBV immune globulin Immune globulin Serum containing antibodies against a specific infection. Mentioned in: Maternal to Fetal Infections ) and nucleoside nucleoside Any of a class of organic compounds, including structural subunits of nucleic acids. Each consists of a molecule of a five-carbon sugar (ribose in RNA, deoxyribose in DNA) and a nitrogen-containing base, either a purine or a pyrimidine. analogs (e.g., lamivudine, lobucavir, famciclovir, adefovir) to inhibit polymerase activity. These treatment options can suppress wild-type HBV to undetectable levels, allowing a mutant HBV strain to emerge as the predominant form. Emergence of a mutant species can be monitored by using such techniques as real-time polymerase chain reaction In Molecular Biology, real-time polymerase chain reaction, also called quantitative real time polymerase chain reaction (QRT-PCR) or kinetic polymerase chain reaction (PCR PCR polymerase chain reaction. PCR abbr. polymerase chain reaction Polymerase chain reaction (PCR) ) assays, restriction length polymorphism polymorphism, of minerals, property of crystallizing in two or more distinct forms. Calcium carbonate is dimorphous (two forms), crystallizing as calcite or aragonite. Titanium dioxide is trimorphous; its three forms are brookite, anatase (or octahedrite), and rutile. assays, quantitative fragment analysis, and primer extension Primer extension is a technique whereby the 5' ends of RNA or DNA can be sequenced. In this technique, we need an oligonucleotide from a transcribed DNA sequence. This oligonucleotide is annealed to the mRNA. assays. These powerful techniques can detect trace mutant sequences in clinical samples with a preponderance of wild-type virus, while conventional DNA sequencing DNA sequencing The determination of the sequence of nucleotides in a sample of DNA. cannot (7). Mixed infection samples (i.e., low-level HBV chronic infections) that contain a preponderance of wild-type HBsAg present a challenge to immunoassay sensitivity, not epitope epitope: see immunity. recognition. We only address the detection of HBsAg mutants in clinical samples that appear to be homogenous homogenous - homogeneous and therefore specifically challenge immunoassay epitope recognition. Replication-defective mutants, intracellular accumulation of normally secreted antigens, and tissue localization Customizing software and documentation for a particular country. It includes the translation of menus and messages into the native spoken language as well as changes in the user interface to accommodate different alphabets and culture. See internationalization and l10n. can also affect mutant detection in clinical samples. Surface Antigen Structure The translational products of the surface antigen gene consist of 3 proteins that have different initiation sites with the same termination site. The most important of these proteins, from a diagnostic standpoint, is the small HBsAg (sHBsAg) protein, which is composed of 226 amino acids (aa). sHBsAg is the major structural protein of the hepatitis B viral envelope viral envelope n. The outer structure that encloses the nucleocapsids of some viruses. . Most HBsAg in the plasma of HBV-infected persons consists of 22-nm spherical particles composed of [approximately equal to] 100 HBsAg monomers each (8). Initial studies noted that HBsAg has a complex structure with discontinuous discontinuous /dis·con·tin·u·ous/ (dis?kon-tin´u-us) 1. interrupted; intermittent; marked by breaks. 2. discrete; separate. 3. lacking logical order or coherence. epitopes. The possibility of multiple antigenic conformations or intermolecular Adj. 1. intermolecular - existing or acting between molecules; "intermolecular forces"; "intermolecular condensation" epitopes cannot be ruled out when considering surface antigen structure. This antigenic complexity has impeded elucidation of HBsAg structure. The HBsAg amino acid sequence contains a highly conformational, hydrophilic hydrophilic /hy·dro·phil·ic/ (-fil´ik) readily absorbing moisture; hygroscopic; having strongly polar groups that readily interact with water. hy·dro·phil·ic adj. domain from positions 100 to 160 referred to as the "a" determinant. The "a" determinant represents the immunodominant region of HBsAg. The reagents used in many HBsAg diagnostic assays are directed against epitopes in the "a" determinant. The "a" determinant conformational epitopes are stabilized by a backbone of conserved disulfide-bonded cysteine cysteine (sĭs`tēn), organic compound, one of the 20 amino acids commonly found in animal proteins. Only the l-stereoisomer participates in the biosynthesis of mammalian protein. residues. Alteration of residues in the "a" determinant can result in reduced antigenicity and reduced levels of protein expression (9). Using a combination of conformational peptides (10) and phage display phage display n. A technique using recombinant DNA technology to create bacteriophages with a desired peptide embedded in the surface of their protein shells. experiments (11), we constructed a working model of the "a" determinant (Figure). The key features of this model include a large laminar laminar /lam·i·nar/ (lam´i-nar) 1. pertaining to a lamina or laminae. 2. laminated. 3. of, pertaining to, or being a streamlined, smooth fluid flow. loop stabilized by bonding between cysteine residues 108-138 with a fingerlike projection stabilized by disulfide-bonded 121-124 cysteine residues. While other cysteine residues affect antigenicity when mutated, a double mutation of these 121-124 cysteine residues has physical properties similar to those of wild-type virus (12). These data indicate that the fingerlike projection at aa 121-124 forms an epitope that is relatively isolated from other substitutions in the "a" determinant. The model also includes a second loop, which projects from the viral membrane and is stabilized by bonding between cysteine pairs 136-149 and 139-147. The human immune response to HBsAg is primarily directed against disulfide-bonded conformational epitopes of the "a" determinant and can be classified into a limited number of epitopes (13-15). Alteration of these conformational epitopes not only can result in failure to neutralize viral infection viral infection, n an infection by a pathogenic virus. A virus acts on the cell nucleus, taking over the genetic material within the nucleus and replicating itself. but also can affect diagnostic assay detection, depending on the epitopes recognized by the assay reagent configuration. Surface Antigen Mutants The initial description of an HBsAg mutant was made in the breakthrough infection of a child born to a HBV-positive mother (16). The virus was vertically transmitted despite the child's being vaccinated and passively immunized against HBV. The breakthrough viral strain was DNA sequenced and shown to contain a substitution mutation of glycine glycine (glī`sēn), organic compound, one of the 20 amino acids commonly found in animal proteins. Glycine is the only one of these amino acids that is not optically active, i.e. to arginine arginine (är`jənĭn), organic compound, one of the 20 amino acids commonly found in animal proteins. Only the l-stereoisomer participates in the biosynthesis of proteins. at HBsAg aa position 145 (Gly/Arg 145) (17). The child subsequently remained both DNA- and HBsAg-positive for this Gly/Arg 145 mutant for >12 years, despite having protective antibody to surface antigen (anti-HBs) titer titer /ti·ter/ (ti´ter) the quantity of a substance required to react with or to correspond to a given amount of another substance. against the wild-type virus. The Gly/Arg 145 substitution alters the projecting loop (aa 139-147) of the "a" determinant such that neutralizing antibody neu·tral·iz·ing antibody n. An antibody that reacts with an infectious agent, usually a virus, and destroys or inhibits its infectiveness and virulence. induced by vaccination no longer recognizes the mutated epitope, hence the term vaccine-escape mutant. Wild-type HBsAg is reduced to undetectable levels in these patient samples. For the vaccine-escape mutant to emerge, the patient's anti-HBs response must be localized to the aa 139-147 region; the Gly/Arg 145 substitution thus confers a selective advantage in viral replication Viral replication is the term used by virologists to describe the propagation of biological viruses during the infection process in the target host cells. When used in the strictest sense, the term refers specifically to the amplification of the viral genome , and the mutant becomes the dominant form of the virus (18). The replication of Gly/Arg 145 mutants has been investigated with chimpanzee chimpanzee, an ape, genus Pan, of the equatorial forests of central and W Africa. The common chimpanzee, Pan troglodytes, lives N of the Congo River. Full-grown animals of this species are up to 5 ft (1. infection models. In the first study, a wild-type HBV infection developed in chimpanzees inoculated with a human sample of Gly/Arg 145 HBV; only samples diluted [greater than or equal to] [10.sup.-6] established mutant infection (19). Since the pol gene ORF partially overlaps the S gene, the Gly/Arg 145 mutation in the S gene sequence corresponds to a Trp/Gln 153 mutation in the pol gene sequence, which results in the expression of an altered polymerase gene product. This altered polymerase is replication competent but has reduced replication efficiency (6). When anti-HBs selection pressure is removed, wild-type HBV returns as the predominant infectious form because of the impeded replication of the Gly/Arg 145 mutant. These facts may explain why transmission studies have failed to show mutant transmission to vaccinated animals (20). If the recipient animal had an anti-HBs response directed against an epitope outside the aa 139-147 region, the mutant inoculum inoculum /in·oc·u·lum/ (-ok´u-lum) pl. inoc´ula material used in inoculation. in·oc·u·lum n. pl. would be neutralized by anti-HBs binding to epitopes unaffected by the Gly/Arg 145 escape mutation. In this case, no HBV infection would be established. Since the emergence of the Gly/Arg 145 mutant is constrained by requiring the host antibody response to be directed solely against the aa 139-147 region, whether the Gly/Arg 145 mutant will become the predominant infectious form of HBV in the future, as some models have predicted (21), is questionable. The Gly/Arg 145 substitution remains by far the predominant HBsAg mutant described in the literature (22). However, a wide range of mutants have been described in the past 10 years, including many amino acid substitution mutants across the "a" determinant (23), amino acid insertions into the "a" determinant (24,25), and deletion mutants (7,26). Some of these substitution mutants appear to be of academic interest as they occur at very low levels in long-term HBV carriers and have only been identified by highly directed DNA amplification DNA amplification Molecular diagnostics Any method used to ↑ the copy number of a sequence of DNA. See Cycling probe technology, Gap LCR–gap ligase chain reaction, Gene amplification, NASBA–nucleic acid sequence-based amplification, PCR, techniques that used primers specific for mutant sequence detection. The conditions for performing highly amplified PCRs must include controls to ensure that any sequence changes found are not an artifact of PCR fidelity itself (27). Some HBV isolates found in screening studies may be infrequently occurring natural variants (28). Given the diversity of HBV genotypes, the categorization of a novel HBsAg amino acid change as a mutant should hinge on Verb 1. hinge on - be contingent on; "The outcomes rides on the results of the election"; "Your grade will depends on your homework" depend on, depend upon, devolve on, hinge upon, turn on, ride a tangible alteration in viral function, such as antigenicity, infectivity, replication, and morphology, which is attributable to the specific change. One method for establishing a mutant is to introduce the suspected amino acid change into a wild-type backbone sequence and demonstrate altered function. Important to the healthcare management of HBV infection is detection of HBsAg mutants by diagnostic assays. HBsAg is a sentinel marker in blood bank donor screening to prevent transmission of HBV infection in patients receiving transfusions. A diagnostic assay used for HBV screening may show false-negative results if the assay configuration cannot detect mutants in the "a" determinant. Initial reactivity data on 9 HBsAg assay configurations determined for 28 defined and quantitated HBsAg recombinant mutant antigens (29) have been confirmed by several groups. In these studies, recombinant HBsAg antigens containing a single amino acid substitution in an otherwise wild-type sequence were tested for immunoassay reactivity. Since the level of protein expression varies greatly for each recombinant HBsAg mutation, diluting each recombinant mutant protein to a known concentration before immunoassay testing was important. By setting the concentration of each recombinant mutant sample well above the antigen endpoint detection of the assays tested, the possibility of false-negative results caused by assay sensitivity Assay sensitivity is a property of a clinical trial defined as the ability to distinguish an effective treatment from a less effective or ineffective treatment. Without assay sensitivity, a trial cannot be said to make a distinction between the efficacy of two treatments. was eliminated. Therefore, false-negative results were due to failure to detect the mutated epitopes of the recombinant antigen. Recombinant HBsAg that represents common mutants found in neonatal breakthrough infections was tested with different immunoassay formats (Table 1). Substitution mutants in the projecting loop of the aa 139-147 region were not detected by some commercial assays. Later generation HBsAg assays have enhanced reagent configurations that allow them to detect not only the common HBsAg mutants but also the rare mutations that occur in the aa 121-124 region such as the Arg + Ala 123 insertion mutant (29). This mutant produces a 228-aa surface antigen (instead of the wild-type 226 aa antigen) with gross alteration of "a" determinant epitopes. This mutant is one of the most challenging to detect by an immunoassay format. In addition to the recombinant antigens, 3 corresponding patient samples containing the native HBsAg mutants were also available for testing. The data indicated that the immunoreactivity of both the recombinant antigen and the original patient sample were the same. No wild-type antigen was detectable in the original patient samples. Not quantitating recombinant HBsAg mutant antigens before immunoassay evaluation can account for some conflicting immunoassay detection results published in subsequent studies (30). Moerman et al. (31) have recently published an expanded selection of immunoassays and their detection of the more common HBsAg mutants (Table 2). Four commercially available assays were tested with both recombinant antigens containing defined mutations within the "a" determinant (samples 1 10) and with actual serum samples containing HBsAg mutants (samples 11-14). Several assays detected all of the mutant panel members, while others failed to detect [greater than or equal to] 1 panel member. The detection of recombinant antigens paralleled the detection of patient serum samples. Furthermore, only mutant HBsAg appears in the false-negative clinical samples, as wild-type antigen would have been detected by the corresponding assays if present at sufficient levels. Other investigators have also confirmed the findings that some immunoassays are susceptible to the common "a" determinant mutants and produce false-negative results (32). Case reports of false-negative diagnostic results due to HBsAg mutants have been described in blood bank (33) and hospital settings (34). The blood bank sample is of special importance since this patient sample (containing a Thr/Leu 143 mutant) was reported as HBsAg positive by 1 screening immunoassay, while a second screening immunoassay reported the same sample as false-negative. The Thr/Leu 143 mutant may be more prevalent than originally thought, as another occurrence has been recently reported in Europe (35). Screening efforts should be undertaken to establish the prevalence of this apparently emerging mutant and to establish its mechanism of selection. In most cases, investigators reporting false-negative results due to HBsAg mutants recommend that laboratory users of HBsAg assays be aware of a given assay's ability to detect mutants. An expert advisory meeting has recently issued a consensus report on emerging HBsAg mutants (36). The meeting participants concluded that the prevalence of HBsAg mutants is probably higher than previously believed. The participants called for enhanced surveillance efforts and data collection for mutants and recommended using assays that detect the most frequently observed mutants at aa positions 139-145. In addition, users should develop an appropriate testing and confirmatory algorithm to ensure mutant detection. The prevalence of HBsAg mutants can be established in laboratories that perform sequential testing of a sample using 2 assays, each with differing susceptibility to mutant false-negative results. Discordant positive samples would be PCR amplified and sequenced to determine if a mutant sequence is present. In a study in Singapore, the Gly/Arg 145 mutation was present alone or in combination with other mutations in 70% of the isolated HBsAg mutants from neonatal breakthrough infections, for an overall mutant prevalence of 4.6% in this population (37). A screening program for school-age children in Taiwan found 27/3,849 patient samples with "a" determinant mutants for a prevalence of 0.7% (38). In India, testing of an HBV chronic carrier's household contacts found what might be the first documented case of Gly/Arg 145 horizontal transmission horizontal transmission n. Transmission of infection by contact. horizontal transmission Epidemiology The transmission of an infection from one to another person of the same generation in the same population. (39). Therefore, the Gly/Arg 145 mutant occurs at a significant rate in some populations and appears to be horizontally transmissible transmissible /trans·mis·si·ble/ (trans-mis´i-b'l) capable of being transmitted. trans·mis·si·ble adj. Capable of being conveyed from one person to another. , which suggests that HBV surveillance programs should use diagnostic methods capable of detecting this mutant. In contrast, substitutions at positions outside of the "a" determinant appear to be readily detected by current commercially available HBsAg immunoassays. For example, mutations near the carboxy terminus of the small HBsAg protein occur when polymerase mutations are selected for in the YMDD reverse transcriptase domain (again well outside the "a" determinant). Of greater interest are the secondary compensatory changes emerging in polymerase mutants (6). These "polymerase stabilizing" mutations are expressed in HBsAg close to or in the "a" determinant and reduce HBsAg immunoreactivity (40). The risk of a "stabilized" polymerase mutant with altered HBsAg epitopes (presumably pre·sum·a·ble adj. That can be presumed or taken for granted; reasonable as a supposition: presumable causes of the disaster. from a patient on long-term nucleoside analog treatment) being transmitted to a compatible recipient is a key issue for diagnosticians to monitor in the future. These mutants would potentially produce false-negative test results in susceptible HBsAg immunoassays and yet have the capacity to replicate in a manner similar to that of wild-type virus. Reporting mutant occurrence at the national level by using data-tracking to monitor regional exposure would mitigate such a risk. These studies of recombinant surface antigen mutants underscore the usefulness of mapping the epitope susceptibility of various commercially available HBsAg assays. While testing of mutant panels is voluntary in some countries, certain regulatory agencies are becoming increasingly aware of HBsAg mutants. In the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. , manufacturers of new HBsAg assays must address mutant detection in their package inserts. With a firm understanding of immunoassay mutant detection, the diagnostician can select the appropriate HBsAg screening algorithm to minimize the impact of mutants in sentinel screening programs. Acknowledgment I thank George Dawson George Dawson may refer to:
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A novel deletion mutant of hepatitis B virus surface antigen. J Med Virol. 1999;58:105-10. (27.) Gunther S, Sommer Sommer is a surname, from the German and Danish word for the season "summer". It may refer to:
vi·re·mi·a n. The presence of viruses in the bloodstream. : frequency and functional consequences of PCR-introduced mutations. J Clin Microbiol. 1998;36:531 8. (28.) Carman W, van Deursen F, Mimms L, Hardie D, Coppola R, Decker R, et al. The prevalence of surface antigen variants of hepatitis B virus in Papua New Guinea Papua New Guinea (păp` ə, –y , South Africa, and Sardinia. Hepatology.
1997;26:1658-16.(29.) Coleman P, Chen Y-C, Mushahwar IK. Immunoassay detection of hepatitis B surface antigen mutants. J Med Virol. 1999;59:19-24. (30.) Ireland J, O'Donnell B, Basuni A, Kean J, Wallace L, Lan G, et al. Reactivity of 13 in vitro in vitro /in vi·tro/ (in ve´tro) [L.] within a glass; observable in a test tube; in an artificial environment. in vi·tro adj. In an artificial environment outside a living organism. expressed hepatitis B surface antigen variants in 7 commercial diagnostic assays. Hepatology. 2000;31:1176-82. (31.) Moerman B, Moons V, Sommer H, Schmitt Y, Stetter M. Evaluation of sensitivity for wild-type and mutant forms of hepatitis B surface antigen by four commercial HBsAg assays. Clin Lab. 2004;50:159-62. (32.) Zaaijer HL, Vrielink H, Koot M. Early detection of hepatitis B surface antigen and detection of HBsAg mutants: a comparison of five assays. Vox Sang. 2001;81:219-21. (33.) Levicnik-Stezinar S. Hepatitis B surface antigen escape mutant in a first time blood donor potentially missed by a routine screening assay. Clin Lab. 2004;50:49-51. (34.) Koyanagi T, Nakamuta M, Sakai H, Sugimoto R, Enjoji M, Koto koto (kō`tō), a Japanese string instrument related in structure to the zither. It consists of an elongated rectangular wooden body, strung lengthwise with 7 to 13 silk strings. K, et al. Analysis of HBs antigen negative variant of hepatitis B virus: unique substitutions, Glu129 to Asp and Gly145 to Ala in the surface antigen gene. Med Sci Monit. 2000;6:1165-9. (35.) Tallo T, Norder H, Tefanova V, Krispin T, Priimagi L, Mukomolov S, et al. Hepatitis B virus genotype D strains from Estonia share sequence similarity with strains from Siberia and may specify ayw4. J Med Virol. 2004;74:221-7. (36.) Gerlich W. Diagnostic problems caused by HBsAg mutants--a consensus report of an expert meeting. Intervirology. 2004;47:310-3. (37.) Oon C, Lim G, Ye Z, Goh K, Tan K, Yo S, et al. Molecular epidemiology molecular epidemiology Molecular medicine An evolving field that combines the tools of standard epidemiology–case studies, questionnaires and monitoring of exposure to external factors with the tools of molecular biology–eg, restriction endonucleases, of hepatitis B virus vaccine variants in Singapore. Vaccine. 1995;13:699-702. (38.) Hsu HY, Chang MH, Liaw SH, Ni YH, Chen HL. Changes of hepatitis B surface antigen variants in carrier children before and after universal vaccination in Taiwan. Hepatology. 1999;30:1312-7. (39.) Thakur V,1 Kazim S, Guptau R,1 Hasnain S, Bartholomeusz A, Malhotra V, et al. Transmission of G145R mutant of HBV to an unrelated contact. J Med Virol. 2005;76:40-6. (40.) Torresi J, Earnest-Silveira L, Civitico G, Waiters TE, Lewin SR, Fyfe J, et al. Restoration of replication phenotype of lamivudine-resistant hepatitis B virus mutants by compensatory changes in the "fingers" subdomain of the viral polymerase selected as a consequence of mutations in the overlapping S gene. Virology virology, study of viruses and their role in disease. Many viruses, such as animal RNA viruses and viruses that infect bacteria, or bacteriophages, have become useful laboratory tools in genetic studies and in work on the cellular metabolic control of gene expression . 2002;299:88-99. Paul F. Coleman, Abbott Laboratories, Abbott Park, Illinois, USA Address for correspondence: Paul F. Coleman, Abbott Laboratories, 100 Abbott Park Rd, Dept 09NB, Bldg AP8A-2, Abbott Park, IL, USA, 60064-6015; fax: 847-937-4828; email: paul.coleman@abbott.com Dr Coleman is an associate research fellow in the Diagnostics Division of Abbott Laboratories. He has been involved in infectious disease Infectious disease A pathological condition spread among biological species. Infectious diseases, although varied in their effects, are always associated with viruses, bacteria, fungi, protozoa, multicellular parasites and aberrant proteins known as prions. diagnostic research for 23 years.
Table 1. Detection of most common hepatitis B surface antigen (HBsAg)
mutants by 9 commercial assays (29) * ([dagger])
Imx
Assay Ausria Auszyme HBsAg
configuration poly/poly mono/mono mono/poly
HBsAg mutants
Wildtype ++ ++ ++
Thr126-Ser ++ + +
Gln129-His ++ + +
Met133-Leu ++ ++ ++
Asp144-Ala ++ ++ ++
Gly145-Arg ++ ++ ++
Thr126-Ser+ ++ ++ +
Gly145- Arg
Pro142-Leu ++ ++ ++
+ Gly145- Arg
Pro142-Ser+ ++ ++ ++
Gly145-Arg
Asp144-Ala+ ++ ++ ++
Gly145-Arg
AxSYM PRISM ARCHITECT
Assay HBsAg HBsAg HBsAg
configuration mono/poly mono/poly mono/poly
HBsAg mutants
Wildtype ++ ++ ++
Thr126-Ser ++ ++ ++
Gln129-His ++ ++ ++
Met133-Leu ++ ++ ++
Asp144-Ala ++ ++ ++
Gly145-Arg ++ ++ ++
Thr126-Ser+ ++ ++ ++
Gly145- Arg
Pro142-Leu ++ ++ ++
+ Gly145- Arg
Pro142-Ser+ ++ ++ ++
Gly145-Arg
Asp144-Ala+ ++ ++ +
Gly145-Arg
Commercial Commercial Commercial
Assay assay A assay B assay C
configuration mono/mono mono/mono poly/mono
HBsAg mutants
Wildtype ++ ++ ++
Thr126-Ser + ++ ++
Gln129-His + ++ ++
Met133-Leu ++ ++ ++
Asp144-Ala - ++ ++
Gly145-Arg - - -
Thr126-Ser+ - - -
Gly145- Arg
Pro142-Leu - - -
+ Gly145- Arg
Pro142-Ser+ - - -
Gly145-Arg
Asp144-Ala+ - - -
Gly145-Arg
* All positive samples confirmed in their respective assays.
([dagger]) ++, equivalent detection to wild-type antigen;
+, detection less than wild-type antigen; -, not detected.
Table 2. Detection of hepatitis B surface antigen (HBsAg)
mutants by 4 commercial assays (30)
Abbott AxSYM Bayer Centaur
HBsAg HBsAg
Capture/detection mono/poly mono/mono
Recombinant samples (s/co) (s/co)
Wildtype 5.45 15.17
Thr126- Ser 4.74 20.17
Gln129- His 4.48 20.12
Met133- Leu 4.84 12.72
Asp144- Ala 3.65 6.47
Gly145- Arg 3.85 <0.10
Thr126- Ser + Gly145- Arg 3.36 <0.10
Pro142- Leu + Gly145- Arg 3.77 <0.10
Pro142- Ser + Gly145- Arg 4.08 <0.10
Asp144- Ala + Gly145- Arg 3.62 <0.10
Clinical samples
Gly145 - Arg 5.85 <0.10
Pro120-Gln/Thr-131 Lys/Gly145-Arg 2.48 <0.10
Thr118-Val/Metl33-I1e/Phe134-Asn/ 17.60 <0.10
Pro142-Ser/Thrl43-Leu/Gly145-Arg
Thr115-Asn/Prol20-Leu/Met133-Ile/ 2.73 <0.10
Phe134-His/Asp144-Val/Ser154-Pro
Ortho Vitros Eci Roche Elecsys
HBsAg HBsAg
Capture/detection mono/mono mono/mono
Recombinant samples (s/co) (s/co)
Wildtype 15.95 9.77
Thr126- Ser 12.50 8.64
Gln129- His 13.85 8.61
Met133- Leu 12.15 8.58
Asp144- Ala 0.12 6.55
Gly145- Arg 0.06 0.56
Thr126- Ser + Gly145- Arg 0.05 0.51
Pro142- Leu + Gly145- Arg 0.05 0.55
Pro142- Ser + Gly145- Arg 0.06 0.54
Asp144- Ala + Gly145- Arg 0.06 0.52
Clinical samples
Gly145 - Arg 0.40 0.70
Pro120-Gln/Thr-131 Lys/Gly145-Arg 0.14 0.62
Thr118-Val/Met133-Ile/Phe134-Asn/ 0.11 0.67
Pro142-Ser/Thr143-Leu/Gly145-Arg
Thr115-Asn/Pro120-Leu/Met133-Ile/ 0.10 0.58
Phe134-His/Asp144-Val/Ser154-Pro
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