DNA fingerprinting of mycobacterium tuberculosis isolates from epidemiologically linked case pairs. (Tuberculosis Genotyping Network).DNA fingerprinting DNA fingerprinting or DNA profiling, any of several similar techniques for analyzing and comparing DNA from separate sources, used especially in law enforcement to identify suspects from hair, blood, semen, or other biological materials found at was used to evaluate epidemiologically linked case pairs found during routine tuberculosis tuberculosis (TB), contagious, wasting disease caused by any of several mycobacteria. The most common form of the disease is tuberculosis of the lungs (pulmonary consumption, or phthisis), but the intestines, bones and joints, the skin, and the genitourinary, (TB) contact investigations in seven sentinel sentinel /sen·ti·nel/ (sen´ti-n'l) one who gives a warning or indicates danger. sentinel a recording mechanism, such as an animal, a farm or a veterinarian, posted explicitly to record a possible occurrence or series of sites from 1996 to 2000. Transmission was confirmed when the DNA fingerprints DNA fingerprint n. An individual's unique sequence of DNA base pairs. Also called genetic fingerprint. of source and secondary cases matched. Of 538 case pairs identified, 156 (29%) did not have matching fingerprints Impressions or reproductions of the distinctive pattern of lines and grooves on the skin of human fingertips. Fingerprints are reproduced by pressing a person's fingertips into ink and then onto a piece of paper. . Case pairs from the same household were no more likely to have confirmed transmission than those linked elsewhere. Case pairs with unconfirmed transmission were more likely to include a smear-negative source case (odds ratio [OR] 2.0) or a foreign-born secondary case (OR 3.4) and less likely to include a secondary case <15 years old (OR 0.3). Our study suggests that contact investigations should focus not only on the household but also on all settings frequented by an index case. Foreign-born persons with TB may have been infected in·fect tr.v. in·fect·ed, in·fect·ing, in·fects 1. To contaminate with a pathogenic microorganism or agent. 2. To communicate a pathogen or disease to. 3. To invade and produce infection in. previously in high-prevalence countries; screening and preventive preventive /pre·ven·tive/ (pre-vent´iv) prophylactic. pre·ven·tive or pre·ven·ta·tive adj. Preventing or slowing the course of an illness or disease; prophylactic. n. measures recommended by the Institute of Medicine could prevent TB reactivation reactivation to become active after a period of quiescence or, as in bacterial and viral infections, latency. cross reactivation in these cases. ********** Investigating persons who have had close contact with tuberculosis (TB) cases is an essential element of public health programs to control and eliminate TB (1,2). These contact investigations are done primarily to discover persons who may require treatment for latent Hidden; concealed; that which does not appear upon the face of an item. For example, a latent defect in the title to a parcel of real property is one that is not discoverable by an inspection of the title made with ordinary care. TB infection and also to find and treat additional persons with TB. While not usually highly contagious contagious /con·ta·gious/ (-jus) capable of being transmitted from one individual to another, as a contagious disease; communicable. con·ta·gious adj. 1. Of or relating to contagion. , TB is generally transmitted to persons who have shared indoor air space frequently or for a long period of time with a person who is infectious (3). Factors that may influence transmission include prolonged pro·long tr.v. pro·longed, pro·long·ing, pro·longs 1. To lengthen in duration; protract. 2. To lengthen in extent. hours of contact during the infectious period infectious period The period during which an infected person can transmit a pathogen to a susceptible host , close proximity to the person with TB, and lack of ventilation ventilation, process of supplying fresh air to an enclosed space and removing from it air contaminated by odors, gases, or smoke. Proper ventilation requires also that there be a movement or circulation of the air within the space and that the temperature and and ultraviolet light Ultraviolet light A portion of the light spectrum not visible to the eye. Two bands of the UV spectrum, UVA and UVB, are used to treat psoriasis and other skin diseases. in a shared environment. Generally, close contacts who live with a person identified with active TB or who habitually HABITUALLY. Customarily, by habit. or frequent use or practice, or so frequently, as to show a design of repeating the same act. 2 N. S. 622: 1 Mart. Lo. R. 149. 2. spend time indoors in close proximity to this person are investigated first. If no evidence of TB transmission is found in these close contacts, the investigation ceases. If transmission has occurred, the investigation may be extended. The "stone-in-the-pond" principle, a technique in which concentric Coming from the center, or circles within circles. For example, tracks on a hard disk are concentric. Tracks on optical media are concentric or spiral shaped (in a coil) depending on the type. circles of contact persons around the case are sequentially investigated, is practiced in many countries (4). If one or more additional persons with TB are identified among the contacts of a person with TB, the person is labeled as the index case for the purpose of the investigation; those subsequently identified are classified as source cases, secondary cases, or unlinked cases. An active TB case found in a contact investigation may be classified as the source of infection to the index case, a secondary case infected by the index case, or a case who neither infected nor was infected by the index case (with a strain of TB unrelated to the strain of the index case). Information about the start and duration of symptoms for the index and the contact cases, and the start and duration of contact between them, facilitates categorization. Categorizing a contact with active TB as a source case, a secondary case, or an unlinked case, based on epidemiologic ep·i·de·mi·ol·o·gy n. The branch of medicine that deals with the study of the causes, distribution, and control of disease in populations. [Medieval Latin epid evidence, helps to direct further investigation. If the source case is known to have drug-resistant TB, establishing epidemiologic links may also aid in choosing an appropriate drug regimen regimen /reg·i·men/ (rej´i-men) a strictly regulated scheme of diet, exercise, or other activity designed to achieve certain ends. reg·i·men n. 1. for the contact before cultures and sensitivity test results are available (5). The chief priority of TB-control programs is to identify and treat active cases of TB before transmission can occur (1,3). If an index case is identified and treated soon after symptoms begin, the time during which TB could be transmitted can be minimized, and active secondary cases are unlikely to be found in contact investigations. If contact investigations are carried out soon after the index case is identified, the time is minimized during which infected persons could progress to disease before receiving treatment for latent TB infection to prevent progression. In a low-prevalence country, a well-resourced and active TB-control program would not expect to find a high proportion of active TB cases among contacts in investigations. Systematic evaluations of contact investigations are infrequent in·fre·quent adj. 1. Not occurring regularly; occasional or rare: an infrequent guest. 2. . In an Australian Australian pertaining to or originating in Australia. Australian bat lyssavirus disease see Australian bat lyssavirus disease. Australian cattle dog a medium-sized, compact working dog used for control of cattle. study, of 1,142 close contacts of 231 cases diagnosed in 1991, a mean of 4.9 contacts per case were identified, but only 3 (0.3%) of the contacts had active TB (6). However, the authors stated that the screening of these contacts was inadequate so TB may have been underdiagnosed. A 1996-1997 U.S. study of contact investigations of 1,080 pulmonary pulmonary /pul·mo·nary/ (pool´mo-nar?e) 1. pertaining to the lungs. 2. pertaining to the pulmonary artery. pul·mo·nar·y adj. Of, relating to, or affecting the lungs. , smear-positive TB patients found a median of four close contacts per patient (7). Thirty-six percent of contacts were tuberculin tuberculin /tu·ber·cu·lin/ (-lin) a sterile solution containing the growth products of, or specific substances extracted from, the tubercle bacillus; used in various forms in the diagnosis of tuberculosis; see also under test. skin-test positive, and 2% had active TB. A systematic review of health department records for all contacts of 349 patients with culture-positive TB in five study areas in 1996 revealed that 13% had not identified contacts (8). Although 3,824 contacts were identified, only 2,095 (55%) completed screening; of these, 1% had active TB. DNA fingerprinting has been used to support contact investigations of large clusters of cases in institutional settings and to suggest possible connections among cases without obvious epidemiologic links. This technique is also used, though rarely, to evaluate epidemiologic links found in contact investigations. In San Francisco San Francisco (săn frănsĭs`kō), city (1990 pop. 723,959), coextensive with San Francisco co., W Calif., on the tip of a peninsula between the Pacific Ocean and San Francisco Bay, which are connected by the strait known as the Golden , culture-positive TB cases previously identified as contacts to active TB cases were evaluated along with their index cases (9); a median of four contacts was investigated for each of the 1,308 culture-positive index cases reported from 1991 to 1996. Of 11,211 contacts evaluated, 108 (1%) had active TB. Of 94 pairs of index and contact cases with active TB, 66 had positive cultures; of these, 54 had restriction fragment length polymorphism restriction fragment length polymorphism n. Abbr. RFLP Intraspecies variations in the length of DNA fragments generated by the action of restriction enzymes and caused by mutations that alter the sites at which these enzymes act, changing results for both strains. Transmission was confirmed (that is, the same strain was identified in both cases) in 38 (70%) of the 54 pairs. Between 1996 and 2000 in the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. , the National Tuberculosis Genotyping Genotyping refers to the process of determining the genotype of an individual with a biological assay. Current methods of doing this include PCR, DNA sequencing, and hybridization to DNA microarrays or beads. and Surveillance Network collected information on contacts with culture-confirmed TB identified during the course of contact investigations and medical record reviews in seven sentinel areas (the states of Arkansas Arkansas, river, United States Arkansas (ärkăn`zəs, är`kənsô'), river, c.1,450 mi (2,330 km) long, rising in the Rocky Mts., central Colo. , Massachusetts, Maryland, Michigan, and New Jersey and selected sites in California and Texas). These data, combined with the results of DNA fingerprinting, were analyzed an·a·lyze tr.v. an·a·lyzed, an·a·lyz·ing, an·a·lyz·es 1. To examine methodically by separating into parts and studying their interrelations. 2. Chemistry To make a chemical analysis of. 3. to evaluate the proportion of epidemiologically linked cases in which transmission was confirmed by matching fingerprints and to investigate the characteristics of case pairs with unconfirmed transmission (unmatched fingerprints). Methods Epidemiologic Information from Contact Investigations Details regarding the study population are presented elsewhere (10,11). Information captured from routine contact investigations and medical record reviews (done before fingerprinting fingerprinting Act of taking an impression of a person's fingerprint. Because each person's fingerprints are unique, fingerprinting is used as a method of identification, especially in police investigations. data were available) were entered into an Epi Info Epi Info is a public domain statistical software for epidemiology developed by Centers for Disease Control and Prevention. Developed by the Centers for Disease Control and Prevention (CDC) in Atlanta, Georgia (USA), Epi Info has been in existence for over 20 years and is version 6.03 database (Centers for Disease Control and Prevention Centers for Disease Control and Prevention (CDC), agency of the U.S. Public Health Service since 1973, with headquarters in Atlanta; it was established in 1946 as the Communicable Disease Center. [CDC See Control Data, century date change and Back Orifice. CDC - Control Data Corporation ], Atlanta, GA) and sent quarterly to CDC. Participating sites entered information on any index cases reported as a definite TB case to the state TB surveillance system from January 1996 to December 2000 and on any contact to an index case reported as a definite TB case between January 1990 and December 2000. Because the study was directed at an evaluation of information acquired during routine public health procedures, information acquired in cluster investigations done because of DNA fingerprint clustering was not included. Information from epidemiologic cluster investigations conducted because more than one case of TB was noted in a congregate con·gre·gate tr. & intr.v. con·gre·gat·ed, con·gre·gat·ing, con·gre·gates To bring or come together in a group, crowd, or assembly. See Synonyms at gather. adj. 1. Gathered; assembled. 2. setting, before fingerprinting had been performed, was included. Participating sites recorded the nature of the relationship between the index case and each contact, the setting in which the two persons interacted, and the direction of transmission (i.e., whether the contact was identified as the source case in relation to the index case, a secondary case in relation to the index case, or whether the direction of transmission remained unidentified). In our analysis, we included only case pairs in which the direction of transmission was specified. Demographic and Clinical Information Demographic and clinical information on source and secondary cases were noted by matching state case numbers to the national TB surveillance system database at CDC. Data reported included gender, race/ethnicity, age at diagnosis, country of origin, previous episodes of TB, sputum smear Noun 1. sputum smear - any of several cytologic smears obtained from different parts of the lower respiratory tract; used for cytologic study of cancer and other diseases of the lungs bronchoscopic smear, lower respiratory tract smear status at diagnosis, chest x-ray chest x-ray, n an examination of the chest using x-rays. Routinely performed in patients complaining of chest pain to rule out respiratory or heart disease. chest X-ray Chest film, see there results, drug susceptibility susceptibility the state of being susceptible. Refers usually to infectious disease but may be to physical factors such as wetting or to psychological factors such as harassment. results, HIV HIV (Human Immunodeficiency Virus), either of two closely related retroviruses that invade T-helper lymphocytes and are responsible for AIDS. There are two types of HIV: HIV-1 and HIV-2. HIV-1 is responsible for the vast majority of AIDS in the United States. status, and occupation. Laboratory Methods In this study, a source case was defined as a person with active TB identified in a routine contact investigation as the probable source of transmission to another person with active TB. A secondary case was a person with active TB identified in a routine contact investigation as having acquired TB from one source case. An epidemiologically linked case pair consisted of two persons identified respectively as linked source and secondary case in the course of a contact investigation. A secondary case could not be linked to more than one source case. However, one or more secondary cases could be linked to a single source case. Transmission was considered confirmed if matching DNA fingerprint patterns were found in both isolates from a case pair. We attempted DNA fingerprinting for all available isolates from participating sites during the period of the study. The methods we used, including a definition for matching fingerprint fingerprint, an impression of the underside of the end of a finger or thumb, used for identification because the arrangement of ridges in any fingerprint is thought to be unique and permanent with each person (no two persons having the same prints have ever been patterns, are described in a related article (10). Statistical Methods Univariate associations between demographic, setting, and clinical variables, and the dependent variable (TB transmission unconfirmed by DNA fingerprinting) were examined by using the Cochran-Mantel-Haenszel test for unequal odds using SAS (1) (SAS Institute Inc., Cary, NC, www.sas.com) A software company that specializes in data warehousing and decision support software based on the SAS System. Founded in 1976, SAS is one of the world's largest privately held software companies. See SAS System. version 8.0 (SAS Institute SAS Institute Inc., headquartered in Cary, North Carolina, USA, has been a major producer of software since it was founded in 1976 by Anthony Barr, James Goodnight, John Sall and Jane Helwig. , Inc., Cary, NC). Associations were also examined by multiple logistic regression In statistics, logistic regression is a regression model for binomially distributed response/dependent variables. It is useful for modeling the probability of an event occurring as a function of other factors. analysis in SPSS A statistical package from SPSS, Inc., Chicago (www.spss.com) that runs on PCs, most mainframes and minis and is used extensively in marketing research. It provides over 50 statistical processes, including regression analysis, correlation and analysis of variance. version 6.0 (SPSS, Inc., Chicago, IL). The correlation matrix Noun 1. correlation matrix - a matrix giving the correlations between all pairs of data sets statistics - a branch of applied mathematics concerned with the collection and interpretation of quantitative data and the use of probability theory to estimate population produced was examined for potential colinearity between variables. Goodness-of-fit analysis was performed by using the SPSS Hosmer-Lemeshow goodness-of-fit test (12). To choose the best-fitting model, we used the likelihood ratio test to compare models. A p value [less than or equal to] 0.05 was considered statistically significant. Results Source and Secondary Cases in Epidemiologically Linked Case Pairs Contact investigations in the sentinel sites identified 538 epidemiologically linked case pairs in which a direction of transmission was specified, both cases were culture positive, and fingerprints were available for both isolates (Table 1). These pairs included 397 source cases, of which 324 (82%) were linked to only 1 secondary case. Of the remaining 73 source cases, 48 were linked to 2 secondary cases; the rest were linked to between 3 and 11 secondary cases. Factors Associated with Transmission Unconfirmed by DNA Fingerprinting Transmission was not confirmed (source and secondary cases had different fingerprints) in 156 (29%) of the 538 epidemiologically linked case pairs. This proportion was unchanged for the 260 case pairs in which both persons lived in the same household; transmission was unconfirmed in 80 (31%) of these pairs. The results of univariate analysis comparing case pairs with unconfirmed transmission to case pairs with confirmed transmission are shown in Table 2. Case pairs with unconfirmed transmission were as likely to be from the same household as those with confirmed transmission, but were more likely to be identified through a shared workplace (odds ratio [OR] 2.3). In univariate analysis, case pairs with unconfirmed transmission were more likely to include a smear-negative source case (OR 2.4), a foreign-born secondary case (OR 4.7), and a case pair in which both persons were Asian or Pacific Islanders Asian or Pacific Islander Multiculture A person with origins in any of the peoples of the Far East, Southeast Asia, Indian subcontinent, Pacific Islands–eg China, India, Japan, Korea, the Philippine Islands and Samoa (OR 3.5) than case pairs with confirmed transmission. Case pairs with unconfirmed transmission were less likely to include a secondary case <15 yrs of age (OR 0.4) and a case pair in which both persons were black or African-American (OR 0.5) than pairs with confirmed transmission. All levels of any factor substantially associated (positively or negatively) with the unconfirmed transmission in the univariate analysis were entered into a multiple logistic regression model. The HIV status of secondary cases and cavitary cavitary /cav·i·ta·ry/ (kav´i-tar-e) characterized by a cavity or cavities. cav·i·tar·y adj. 1. Relating to or having a cavity or cavities. 2. disease in source cases was also included because of potential biologic importance. No interactions were seen, and interaction terms were removed. In the full model without interaction terms, case pairs with unconfirmed transmission were significantly more likely to include a smear-negative source case (OR 2.0) or a foreign-born secondary case (OR 3.4), and significantly less likely to include a secondary case <15 yrs of age (OR 0.3) than case pairs with confirmed transmission. The association for workplace setting seen on univariate analysis was not significant in this model (OR 2.7, p=0.08). We did not find a high level of colinearity between pairs of variables. Confidence intervals confidence interval, n a statistical device used to determine the range within which an acceptable datum would fall. Confidence intervals are usually expressed in percentages, typically 95% or 99%. and p values for factors significantly associated with unconfirmed transmission in this model are shown in Table 3. The DNA fingerprints of 34 nonmatching case pairs differed by fewer than three bands. When we removed these case pairs from the analysis, we found the same variables were still substantially associated with unconfirmed transmission,. although the ORs differed slightly (results not shown), so these pairs were retained. Discussion Our study found that 29% of TB case pairs identified in contact investigations in seven sites during the course of 5 years were not confirmed as linked by using DNA fingerprinting. We used a restricted definition for considering a case pair to be epidemiologically linked: direction of transmission had to be identified as a result of the epidemiologic investigation. Despite the differences in methodology between our research and a California study (9), which used a less restrictive definition (an epidemiologic case pair was an index case and contact case), both studies found a similar percentage of unconfirmed case pairs. The fact that case pairs in which transmission was unconfirmed were no less likely to be found in the same household than case pairs in which transmission was confirmed suggests that apparent household transmission should not be taken at face value. Marks et al., in a review of U.S. contact investigations (7), report that 33% of contact investigations focused only on the household of the index case. Veen, however, suggests that a modern day stone-in-the-pond approach should focus first on the places and groups frequented by the person classified as the index case, which may not only be the household (4). Onorato notes that as TB in the United States becomes less prevalent, forms and settings of transmission previously considered unusual will appear relatively more common (13). Many public health departments have designed contact investigation formats to focus on places frequented by persons newly diagnosed with TB and the persons with whom they have had contact during the infectious period, rather than focusing only on the household (S. Shamprapai, pers. comm.). Our findings suggest that this strategy may be useful, even when an apparent source case has been located in the same household. Unconfirmed transmission between an epidemiologically linked case pair has two interpretations: either the secondary case actually has a reactivation of a latent, remotely acquired TB infection or the transmission was recent, but the source case has not been identified. The progression of a latent, remotely acquired infection to active TB implies that an opportunity to identify infection and apply appropriate preventive measures may have been missed. Failure to correctly identify the source of a recent transmission suggests that contact-tracing procedures may have been inadequate or that an unusual setting or mode of transmission may have been associated with the infection. The significant associations found in our study suggest that either explanation could apply to many of the unconfirmed transmissions we identified. Few secondary cases in the study reported previous active TB, and prevalence of previous TB was equal among the confirmed and unconfirmed transmission groups. However, previous TB infection could still be an important factor among some foreign-born persons classified as secondary cases in case pairs in which transmission was unconfirmed. Foreign-born persons from countries with high TB prevalence are likely to have had multiple opportunities for exposure to TB before arrival in the United States (3), diminishing di·min·ish v. di·min·ished, di·min·ish·ing, di·min·ish·es v.tr. 1. a. To make smaller or less or to cause to appear so. b. the likelihood that any one identified exposure, such as the source case identified in the contact investigation, is the source of transmission. Screening new arrivals from countries with a high prevalence of TB and scheduling additional screening of persons from such countries were both given a high priority in the Institute of Medicine's recent recommendations for eliminating TB in the United States (3). The Institute noted that such screening is currently inadequate and warrants expansion, as well as follow-up to ensure that foreign-born persons with positive tuberculin skin tests Tuberculin Skin Test Definition Tuberculosis (TB) is an airborne infectious disease caused by the bacteria Mycobacterium tuberculosis. Besides culturing in the laboratory, the two most common types of tests to screen for exposure to this disease receive treatment. Much of the active TB among the 133 foreign-born persons classified as secondary cases in this study, as well as some of the TB among the 139 foreign-born persons classified as source cases, might have been prevented if such screening and follow-up were more widely implemented. Another major finding in this survey is the significant positive association between a smear-negative source case and unconfirmed transmission. This finding suggests that identifying a smear-negative source case for an index case should not preclude pre·clude tr.v. pre·clud·ed, pre·clud·ing, pre·cludes 1. To make impossible, as by action taken in advance; prevent. See Synonyms at prevent. 2. ongoing investigation of other possible sources. On the other hand, the study does not suggest that transmission from smear-negative cases does not occur. Contact investigations of smear-negative cases generally have a low priority in most public health departments. Given that contact investigations were not likely to have been conducted for many smear-negative cases in the network, the fact that 19% of confirmed case pairs had a smear-negative source case suggests that transmission from smear-negative source cases is not negligible Please [ improve this article] by rewriting this article or section in an . . This proportion is similar to that found in a DNA fingerprinting study of two types of epidemiologic clusters, those with smear-negative source cases and those with smear-positive index cases (14). Twenty percent of case pairs with confirmed transmission had a smear-negative index case. Eighty-nine percent of case pairs with a secondary case <15 years of age were confirmed by genotyping. The shorter incubation incubation /in·cu·ba·tion/ (in?ku-ba´shun) 1. the provision of proper conditions for growth and development, as for bacterial or tissue cultures. 2. of TB in children than in adults and the more limited social circles of children increase the likelihood that children with TB were infected within the circle of present contacts located in a contact investigation. These same factors make TB in children preventable. If TB in the 55 adult source cases who transmitted the infection to these children had been diagnosed and treated promptly and contact tracing In epidemiology, contact tracing is the identification and diagnosis of persons who may have come into contact with an infected person. For sexually transmitted diseases, this is generally limited to sexual partners but for highly virulent diseases such as Ebola and tuberculosis, a had resulted in timely and complete treatment for latent TB infection, latent TB infection in most of these children would have been prevented or would not have progressed to TB. We hypothesized that secondary cases [greater than or equal to] 65 years of age might have had a greater risk for unconfirmed transmission, given longer lives which included the era of relatively high TB rates before the availability of TB drugs. However, case pairs with unconfirmed transmission were no more likely to include an elderly person as a secondary case than pairs with confirmed transmission. TB in an elderly person should not be assumed to be a reactivation, and contact investigations should attempt to identify a possible source case. Nearly half the workplace case pairs did not have transmission confirmed by DNA fingerprinting, although the number of case pairs was small. When active TB is diagnosed in a person in a workplace, screening is often not confined con·fine v. con·fined, con·fin·ing, con·fines v.tr. 1. To keep within bounds; restrict: Please confine your remarks to the issues at hand. See Synonyms at limit. to close contacts. Casual contacts may be screened because of anxiety on the part of management and staff. Including nonclose contacts in the screening increases the likelihood that if an additional case is found, transmission did not occur from the index case. Our hypothesis that secondary cases with HIV are more likely to be part of a confirmed case pair than other secondary cases, since their compromised immune status predisposes them to a quicker progression to active TB once infected, was not borne out in this study. Persons with HIV are also more likely to reactivate re·ac·ti·vate v. 1. To make active again. 2. To restore the ability to function or the effectiveness of. re·ac previous TB infections than persons not dually infected, which may explain the relatively equal proportions of confirmed and unconfirmed transmissions from the identified source among HIV-positive persons. HIV may also be underreported in the TB surveillance system, and the numbers reported may not represent the real numbers of persons with HIV. Although DNA fingerprinting provided helpful research information in our study, we think the tool should not be considered a routine contact investigation tool. Contact investigations should ideally be undertaken, and often will be completed, before the isolates from the index case are available. Since early identification of TB cases and prevention of further cases is the highest priority, DNA fingerprinting methods will not be relevant to most contact investigations in a TB control program. If TB cases are identified early and appropriate preventive measures taken for latent TB infection seen in contacts, transmission of TB and progression of latent TB infection to TB in infected contacts should be rare. As noted earlier, other studies report a secondary case rate of between <1% and 4% in contact investigations; as programs progress towards TB elimination, this rate may be further reduced. DNA fingerprinting is most likely to be relevant when a case is suspected of being part of a larger outbreak, for which fingerprints could confirm extensive transmission. This survey suggests that DNA fingerprinting could also be used when an apparent source for an index case is sputum sputum /spu·tum/ (spu´tum) [L.] expectoration; matter ejected from the trachea, bronchi, and lungs through the mouth. sputum cruen´tum bloody sputum. smear-negative, to evaluate whether the smear-negative case could be the true source case, or whether further investigation is needed.
Table 1. Characteristics of source and secondary cases in epidemio-
logically defined tuberculosis case pairs from seven states, 1996-2000
Tuberculosis case pairs (%) (n=538)
Source cases (%) Secondary cases
Characteristic (n=397) (%) (n=538)
Gender
Men 62 60
Women 38 40
Race/ethnicity
White 16 16
Black or African-American 51 56
Hispanic 17 15
Asian or Pacific Islander 16 13
Age
<15 yrs 1 14
15-44 yrs 61 54
44-65 yrs 28 26
>65 yrs 9 7
History of previous tuberculosis 7 3
Foreign-born 35 25
Pulmonary disease 95 91
Negative sputum smear 25 47
Cavitary disease 47 22
Homeless 9 7
Alcoholic 27 22
Injection drug user 6 5
HIV seropositive 11 9
Table 2. Univariate analysis of factors associated with transmission
unconfirmed by DNA fingerprinting in tuberculosis case pairs identified
in contact investigations in seven sites, 1996-2000
Transmission
Variable unconfirmed (%) (n=156)
Relationship between persons in case pairs
Shared household 80 (51)
Friends/social 55 (35)
Shared workplace 11 (7)
Other 10 (6)
Characteristics of source cases
Sputum smear-negative 56 (36)
Cavitary disease 64 (41)
Characteristics of secondary cases
Foreign-born 73 (47)
Previous tuberculosis 5 (3.0)
<15 yrs 8 (5)
[greater than or equal to] 65 yrs 16 (11)
HIV positive 13 (8)
Characteristics of case pairs
Both white 14 (9)
Both black 62 (40)
Both Hispanic 21 (14)
Both Asian or Pacific Islander 35 (22)
Racial discrepancy 24 (15)
Age difference >10 yrs 88 (56)
Transmission
Variable confirmed (%) (n=382)
Relationship between persons in case pairs
Shared household 180 (47)
Friends/social 156 (41)
Shared workplace 12 (3)
Other 34 (9)
Characteristics of source cases
Sputum smear-negative 73 (19)
Cavitary disease 197 (52)
Characteristics of secondary cases
Foreign-born 60 (16)
Previous tuberculosis 12 (3.0)
<15 yrs 65 (17)
[greater than or equal to] 65 yrs 21 (6)
HIV positive 33 (9)
Characteristics of case pairs
Both white 42 (11)
Both black 221 (58)
Both Hispanic 46 (12)
Both Asian or Pacific Islander 29 (8)
Racial discrepancy 40 (11)
Age difference >10 yrs 198 (52)
Odds ratio
(95% confidence
Variable intervals)
Relationship between persons in case pairs
Shared household 1.2 (0.8 to 1.7)
Friends/social 0.8 (0.5 to 1.2)
Shared workplace 2.3 (1.1 to 5.4)
Other 1.0 (0.6 to 1.5)
Characteristics of source cases
Sputum smear-negative 2.4 (1.6 to 3.6)
Cavitary disease 0.7 (0.5 to 1.0)
Characteristics of secondary cases
Foreign-born 4.7 (3.1 to 7.2)
Previous tuberculosis 1.1 (0.4 to 3.7)
<15 yrs 0.4 (0.2 to 0.8)
[greater than or equal to] 65 yrs 1.8 (0.9 to 3.6)
HIV positive 1.0 (0.5 to 1.9)
Characteristics of case pairs
Both white 0.5 (0.4 to 1.5)
Both black 0.5 (0.3 to 0.7)
Both Hispanic 1.l (0.7 to 2.0)
Both Asian or Pacific Islander 3.5 (2.1 to 6.0)
Racial discrepancy 1.2 (0.9 to 1.4)
Age difference >10 yrs 1.2 (0.8 to 1.7)
Variable p value (a)
Relationship between persons in case pairs
Shared household NS
Friends/social NS
Shared workplace 0.04
Other NS
Characteristics of source cases
Sputum smear-negative <0.0001
Cavitary disease NS
Characteristics of secondary cases
Foreign-born <0.0001
Previous tuberculosis NS
<15 yrs 0.07
[greater than or equal to] 65 yrs NS
HIV positive NS
Characteristics of case pairs
Both white NS
Both black 0.005
Both Hispanic NS
Both Asian or Pacific Islander <0.0001
Racial discrepancy NS
Age difference >10 yrs NS
(a) NS, not significant.
Table 3. Logistic regression model (a) showing factors associated with
transmission unconfirmed by DNA fingerprinting in tuberculosis case
pairs identified in contact investigations in seven sites, 1996-2000
Adjusted odds
ratio (95% confi-
Factor dence intervals)
Smear-negative source case 2.0 (1.2 to 3.1)
Foreign-born secondary case 3.4 (2.0 to 6.0)
Secondary case <15 yrs 0.3 (0.2 to 0.8)
Secondary case [greater than or equal to] 65 yrs 1.7 (0.8 to 3.6)
Workplace setting 2.7 (0.9 to 5.7)
Factor p value
Smear-negative source case 0.001
Foreign-born secondary case <0.0001
Secondary case <15 yrs 0.01
Secondary case [greater than or equal to] 65 yrs 0.2
Workplace setting 0.08
(a) The model also included in the multiple logistic regression
analysis all levels of the following factors that were not
significantly associated with unconfirmed transmission: cavitary
disease in source case, race/ethnicity of case pair, and HIV status of
secondary case. In the goodness-of-fit test, full model's p value was
0.885; and the p value for a reduced model containing only the
variables with significant associations was 0.725. Thus, both models
fit adequately. For the full model, -2 x log likelihood was 564.044;
for the reduced model, -2 x log likelihood was 571.469. The difference
was distributed as a chi-square variable with 1 degree of freedom. The
full model gave a better fit than the reduced model and was retained
(p=0.0064, chi square >7.425).
Acknowledgments We thank the participants in the National Tuberculosis Genotyping and Surveillance Network for their concerted efforts in making this study possible. References (1.) Advisory Council for the Elimination of Tuberculosis. Essential components of a tuberculosis prevention and control program. MMWR MMWR Morbidity & Mortality Weekly Report Epidemiology A news bulletin published by the CDC, which provides epidemiologic data–eg, statistics on the incidence of AIDS, rabies, rubella, STDs and other communicable diseases, causes of mortality–eg, Morb Mortal mortal /mor·tal/ (mor´t'l) 1. subject to death, or destined to die. 2. fatal. mor·tal adj. 1. Liable or subject to death. 2. Wkly Rep (programming) REP - A directive used in IBM object code card decks (and later PTF Tapes) to REPlace fragments of already assembled or compiled object code prior to link edit. 1995;44(RR-11):1-18. (2.) Advisory Council for the Elimination of TB. Tuberculosis elimination revisited: obstacles, opportunities, and a renewed commitment. MMWR Recomm Rep 2002;48(RR-9): 1-13. (3.) Institute of Medicine. Ending neglect: the elimination of tuberculosis in the United States. 1st ed. Washington: National Academy Press; 2000. (4.) Veen J. Microepidemics of tuberculosis: the stone-in-the-pond theory. Tuber tuber, enlarged tip of a rhizome (underground stem) that stores food. Although much modified in structure, the tuber contains all the usual stem parts—bark, wood, pith, nodes, and internodes. Lung Dis 1992;73:73-6. (5.) Villarino M, Dooley S Dooley is an Irish surname, and may refer to
(6.) MacIntyre CR, Plant AJ. Impact of policy and practice on the effectiveness of contact screening for tuberculosis. Prev Med 1998;27:830-7. (7.) Marks S, Taylor Z, Quails N, Shrestha-Kuwahara R, Wilce M, Nguyen C. Outcomes of contact investigations of infectious tuberculosis patients. Am J Respir Crit Care Med 2000;162:2033-8. (8.) Reichler M, Reeves R, Bur S, Thompson V, Mangura B, Onorato I. Evaluation of investigations conducted to detect and prevent transmission of tuberculosis. JAMA JAMA abbr. Journal of the American Medical Association 2002;287:991-5. (9.) Behr M, Hopewell P, Paz A, Kawamura M, Schecter G, Small P. Predictive value pre·dic·tive value n. The likelihood that a positive test result indicates disease or that a negative test result excludes disease. predictive value a measure used by clinicians to interpret diagnostic test results. of contact investigation for identifying recent transmission of Mycobacterium tuberculosis Mycobacterium tuberculosis n. Tubercic bacillus. Mycobacterium tuberculosis . Am J Respir Crit Care Med 1998;158:465-9. (10.) Crawford JT, Braden CR, Schable BA, Onorato IM. National Tuberculosis Genotyping and Surveillance network: design and methods. Emerg Infect infect /in·fect/ (in-fekt´) 1. to invade and produce infection in. 2. to transmit a pathogen or disease to. in·fect v. 1. Dis 2002;8;1192-6. (11.) Ellis BA, Crawford JT, Braden CR, McNabb SJN SJN Scottsdale Job Network (Scottsdale, AZ) SJN St. John Neumann , Moore M, Kammerer S, et al. Molecular epidemiology molecular epidemiology Molecular medicine An evolving field that combines the tools of standard epidemiology–case studies, questionnaires and monitoring of exposure to external factors with the tools of molecular biology–eg, restriction endonucleases, of tuberculosis in a sentinel surveilance population. Emerg Infect Dis 2002;8;1197-1209. (12.) Hosmer DW, Lemeshow S. Applied logistic regression. New York New York, state, United States New York, Middle Atlantic state of the United States. It is bordered by Vermont, Massachusetts, Connecticut, and the Atlantic Ocean (E), New Jersey and Pennsylvania (S), Lakes Erie and Ontario and the Canadian province of : John Wiley John Wiley may refer to:
(13.) Onorato I. TB outbreaks in the United States. Int J Tuberc Lung Dis 2000;4:5121-6. (14.) Behr MA, Warren SA, Salamon H, Hopewell PC, Ponce de Leone A, Daley CL, et al. Transmission of Mycobacterium tuberculosis from acid-fast bacilli bacilli /ba·cil·li/ (bah-sil´i) plural of bacillus. bacilli see bacillus. smear-negative patients. Lancet lancet /lan·cet/ (lan´set) a small, pointed, two-edged surgical knife. lan·cet n. 1999;353:444-9. Diane E. Bennett, * Ida M. Onorato, * Barbara A. Ellis, * Jack T. Crawford, * Barbara Schable, * Robert Byers, * J. Steve Kammerer, * and Christopher R. Braden * * Centers for Disease Control and Prevention, Atlanta, Georgia, USA Dr. Bennett is the coordinator of Antiretroviral Drug “HAART” redirects here. For UK estate agency Haart, see Spicerhaart. Antiretroviral drugs are medications for the treatment of infection by retroviruses, primarily HIV. Different classes of antiretroviral drugs act at different stages of the HIV life cycle. Resistance Monitoring, Division of HIV/AIDS HIV/AIDS Human Immunodeficiency Virus/Acquired Immune Deficiency Syndrome Prevention, Centers for Disease Control and Prevention. Her research interests include the application of molecular methods to the epidemiology epidemiology, field of medicine concerned with the study of epidemics, outbreaks of disease that affect large numbers of people. Epidemiologists, using sophisticated statistical analyses, field investigations, and complex laboratory techniques, investigate the cause of HIV and tuberculosis. Address for correspondence: Diane Bennett, Division of HIV/AIDS Prevention-SE, Centers for Disease Control and Prevention, Mailstop E46, 1600 Clifton Road Clifton Road is main street in Clifton neighborhood of Saddar Town in Karachi, Sindh, Pakistan. Its name dates from the British Colonial rule, and its market is posh areas of Karachi. , Atlanta, GA 30333, USA; fax: 404-639-8959; e-mail: dbennett@cdc.gov |
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