Computer algorithms to detect bloodstream infections.We compared manual and computer-assisted bloodstream blood·stream n. The flow of blood through the circulatory system of an organism. bloodstream the blood flowing through the circulatory system in the living body. infection surveillance for adult inpatients at two hospitals. We identified hospital-acquired, primary, central-venous catheter catheter /cath·e·ter/ (kath´e-ter) 1. a tubular, flexible surgical instrument that is inserted into a cavity of the body to withdraw or introduce fluid. 2. urethral c. (CVC See CSC. )-associated bloodstream infections by using five methods: retrospective, manual record review by investigators; prospective, manual review by infection control professionals; positive blood culture plus manual CVC determination; computer algorithms; and computer algorithms and manual CVC determination. We calculated sensitivity, specificity, predictive values pre·dic·tive value n. The likelihood that a positive test result indicates disease or that a negative test result excludes disease. predictive value a measure used by clinicians to interpret diagnostic test results. , plus the kappa Kappa Used in regression analysis, Kappa represents the ratio of the dollar price change in the price of an option to a 1% change in the expected price volatility. Notes: Remember, the price of the option increases simultaneously with the volatility. statistic statistic, n a value or number that describes a series of quantitative observations or measures; a value calculated from a sample. statistic a numerical value calculated from a number of observations in order to summarize them. ([kappa]) between investigator review and other methods, and we correlated cor·re·late v. cor·re·lat·ed, cor·re·lat·ing, cor·re·lates v.tr. 1. To put or bring into causal, complementary, parallel, or reciprocal relation. 2. infection rates for seven units. The value was 0.37 for infection control review, 0.48 for positive blood culture plus manual CVC determination, 0.49 for computer algorithm, and 0.73 for computer algorithm plus manual CVC determination. Unit-specific infection rates, per 1,000 patient days, were 1.0-12.5 by investigator review and 1.4-10.2 by computer algorithm (correlation r = 0.91, p = 0.004). Automated bloodstream infection surveillance with electronic data is an accurate alternative to surveillance with manually collected data. ********** Central-venous catheter (CVC)-associated bloodstream infections are common adverse events in healthcare facilities, affecting approximately 80,000 intensive-care unit patients in the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. each year (1,2). These infections are a leading cause of death in the United States (3) and are also associated with substantially increased disease and economic cost (4). As part of an overall prevention and control strategy, the Centers for Disease Control and Prevention's (CDC See Control Data, century date change and Back Orifice. CDC - Control Data Corporation ) Healthcare Infection Control Practices Advisory Committee recommends ongoing surveillance for blood stream infection (2). However, traditional surveillance methods are dependent on manual collection of clinical data from the medical record, clinical laboratory, and pharmacy by trained infection control professionals. This approach is time-consuming and costly and focuses infection control resources on counting rather than preventing infections. In addition, applying CDC case definitions requires considerable clinical judgment (5), and these definitions may be inconsistently applied. Further, human case finding can lack sensitivity (6), and interinstitutional variability in surveillance techniques complicates interhospital comparisons (7). With the increasing availability of electronic data originating from clinical care (e.g., microbiology microbiology: see biology. microbiology Scientific study of microorganisms, a diverse group of simple life-forms including protozoans, algae, molds, bacteria, and viruses. results and medication orders), alternative approaches to adverse event detection have been proposed (8) and hold promise for improving detection of bloodstream infections. We present the results of an evaluation study comparing traditional, manual surveillance methods to alternative methods with available clinical electronic data and computer algorithms to identify bloodstream infections. Methods The study was conducted at two institutions, both of which participate in the Chicago Antimicrobial antimicrobial /an·ti·mi·cro·bi·al/ (-mi-kro´be-al) 1. killing microorganisms or suppressing their multiplication or growth. 2. an agent with such effects. Resistance Project: Cook County Hospital, a 600-bed public teaching hospital and Provident prov·i·dent adj. 1. Providing for future needs or events. 2. Frugal; economical. [Middle English, from Latin pr Hospital, a 120-bed community hospital. As part of the project, we created a data warehouse by using data from the admission and discharge, pharmacy, microbiology, clinical laboratory, and radiology radiology, branch of medicine specializing in the use of X rays, gamma rays, radioactive isotopes, and other forms of radiation in the diagnosis and treatment of disease. department databases (9). The data warehouse is a relational database relational database Database in which all data are represented in tabular form. The description of a particular entity is provided by the set of its attribute values, stored as one row or record of the table, called a tuple. that allows us to link data for individual patients from these separate departments. Data are downloaded from the various departmental databases to our warehouse once every 24 hours; therefore, the algorithms can be applied to clinical data from the previous day. Facility-specific procedures exist for acquiring and processing blood specimens. At both hospitals, the decision to obtain blood cultures was determined solely by medical providers, without input from infection control professionals or study investigators. After CVC removal, the decision to send a distal distal /dis·tal/ (-t'l) remote; farther from any point of reference. dis·tal adj. 1. Anatomically located far from a point of reference, such as an origin or a point of attachment. segment of the CVC for culture was at the discretion of the medical care provider; both microbiology laboratories accepted these specimens for culture. Since considerable interfacility variability likely exists in CVC culture practices beyond Cook County and Provident Hospitals, we decided not to incorporate these culture results into our computer algorithms. Blood cultures were obtained and processed at Cook County and Provident Hospitals by using similar methods. At Cook County Hospital, blood cultures were obtained by resident physicians or medical students. At Provident Hospital, blood cultures were obtained by phlebotomists outside of the intensive-care units and by a nurse or physician in the intensive-care unit. At each hospital, blood cultures were injected in·ject·ed adj. 1. Of or relating to a substance introduced into the body. 2. Of or relating to a blood vessel that is visibly distended with blood. injected 1. introduced by injection. 2. congested. into Bactec (Becton Dickinson BD (NYSE: BDX), is a medical technology company that manufactures and sells medical devices, instrument systems and reagents. Founded in 1897 and headquartered in Franklin Lakes, New Jersey, BD employs 27,000 people in nearly 50 countries. , Inc., Sparks, MD) bottles and incubated for up to 5 days in an automated blood culture detection system. When microbial microbial pertaining to or emanating from a microbe. microbial digestion the breakdown of organic material, especially feedstuffs, by microbial organisms. growth was detected, samples were spread onto solid media and incubated overnight. Using data from several sources, we compiled a list of all patients who had a positive blood culture hospitalized on inpatient inpatient /in·pa·tient/ (in´pa-shent) a patient who comes to a hospital or other health care facility for diagnosis or treatment that requires an overnight stay. in·pa·tient n. units other than the pediatric pediatric /pe·di·at·ric/ (pe?de-at´rik) pertaining to the health of children. pe·di·at·ric adj. Of or relating to pediatrics. or neonatal neonatal /neo·na·tal/ (ne?o-nat´'l) pertaining to the first four weeks after birth. ne·o·na·tal adj. Of or relating to the first 28 days of an infant's life. units from September 1,2001, through February 28, 2002 (study period). Positive blood cultures obtained <2 days after hospital admission and not evaluated by an infection control professional were excluded. Positive blood cultures obtained within 5 days of the initial positive blood culture were considered as part of the same episode; i.e., these blood cultures were considered polymicrobial infections. At Cook County Hospital, we studied a random sample of positive blood cultures. At Provident Hospital, since a relatively small number of cultures were obtained during the study period, we evaluated all positive blood cultures. Approval was obtained by the local and CDC human participant review boards. Investigator Review We used the CDC definition for primary, CVC-associated, laboratory-confirmed bloodstream infection (10). Four study investigators, all of whom had previous experience applying these definitions, performed retrospective medical record reviews. Two investigators independently reviewed each medical record. If there was a judgment disagreement between the two investigators, a third reviewer re·view·er n. One who reviews, especially one who writes critical reviews, as for a newspaper or magazine. reviewer Noun a person who writes reviews of books, films, etc. Noun 1. categorized cat·e·go·rize tr.v. cat·e·go·rized, cat·e·go·riz·ing, cat·e·go·riz·es To put into a category or categories; classify. cat the blood culture. Investigators were blinded to other investigators' reviews and to determinations made by review and by computer algorithms. To minimize the likelihood of investigator interpretation approximating the computer algorithm, i.e., systematic bias in definition interpretation, the details of the computer algorithms were not disclosed to three of the four reviewers. The reviewer who participated in the construction of the computer algorithms functioned in the same capacity as the other three reviewers (i.e., all four reviewers could participate in the initial or final reviews). Infection Control Professional Review During the study period, infection control professionals at Cook County and Provident Hospitals performed prospective hospitalwide bloodstream infection surveillance using the CDC definitions (10). Six infection control professionals submitted data, four at Cook County Hospital and two at Provident Hospital; all were registered nurses and had 10-30 years of infection control experience. All six had attended a 1-day surveillance seminar conducted by CDC personnel and had access to an infection control professional who had attended a CDC-sponsored infection surveillance training course; tour were certified See certification. in infection control. At Cook County Hospital, a list of all positive blood culture results was generated by a single person in the microbiology laboratory. Duplicates (i.e., the same species identified within the previous 30 days) were excluded, and the list was distributed to the infection control professionals. For those patients who had not been discharged, the infection control professionals reviewed the medical chart, and if their assessment differed from the medical record documentation, they could discuss the case with the medical team. For patients who had been discharged, only the medical record was reviewed. For polymicrobial cultures (i.e., >1 organism isolated from a blood culture), infection control professionals categorized each isolate. The infection control professionals did not participate in the medical team's ward rounds. At Provident Hospital, the procedures were similar except that the laboratory printed out all positive culture results, and the infection control professional manually excluded duplicate results. Determinations were recorded on a standardized standardized pertaining to data that have been submitted to standardization procedures. standardized morbidity rate see morbidity rate. standardized mortality rate see mortality rate. , scannable form, and the forms were sent to a central location, where they were evaluated for completeness and then scanned into a database. In cases where the infection control professional did not record whether the infection was hospital- or community-acquired, we categorized the infection as hospital-acquired if it was detected >2 days after hospital admission. Computer Algorithms We evaluated several methods to categorize cat·e·go·rize tr.v. cat·e·go·rized, cat·e·go·riz·ing, cat·e·go·riz·es To put into a category or categories; classify. cat blood cultures. First, we evaluated a simple method that required only a computer report of a positive blood culture recovered >2 days after admission plus manual determination of whether a CVC was present. Second, alter consultation with infectious disease Infectious disease A pathological condition spread among biological species. Infectious diseases, although varied in their effects, are always associated with viruses, bacteria, fungi, protozoa, multicellular parasites and aberrant proteins known as prions. clinicians, we developed rules that were combined into more sophisticated computer algorithms (Table 1, Figure 1). Two rules were developed for two of the determinations that were required. For determining infection versus contamination, rule B1 used only microbiology data, while rule B2 used microbiologic and pharmacy data. For determining primary versus secondary (i.e., the organism cultured from the blood is related to an infection at another site) bloodstream infection, rule C1 was limited to a 10-day window, while rule C2 extended throughout the hospitalization hospitalization /hos·pi·tal·iza·tion/ (hos?pi-t'l-i-za´shun) 1. the placing of a patient in a hospital for treatment. 2. the term of confinement in a hospital. . Since two options existed for two separate rules, these rules were combined into four separate algorithms. We report the results of the algorithms that had the best (roles A, B2, C2, and D) and worst (rules A, B1, C1, and D) performance. Consistent with the manual methods, polymicrobial cultures were considered a single event. Polymicrobial blood cultures were considered an infection if any isolate recovered from the same culture met infection criteria, and, in contrast to the manual methods, were considered a secondary bloodstream infection if any isolate that met infection criteria also met criteria to be classified as secondary. Third, since we could not automate CVC detection, we also evaluated augmentation AUGMENTATION, old English law. The name of a court erected by Henry VIII., which was invested with the power of determining suits and controversies relating to monasteries and abbey lands. of automated bloodstream infection detection with manual determination of a CVC. [FIGURE 1 OMITTED] For Provident Hospital, since the number of positive blood cultures evaluated by each rule was relatively small, we do not report the performance characteristics. We do report the results for the best and worst computer algorithms at each hospital and at both hospitals combined. Statistics For polymicrobial cultures, we analyzed an·a·lyze tr.v. an·a·lyzed, an·a·lyz·ing, an·a·lyz·es 1. To examine methodically by separating into parts and studying their interrelations. 2. Chemistry To make a chemical analysis of. 3. the results at the level of the blood culture. We were primarily interested in evaluating the detection of hospital-acquired, primary, CVC-associated bloodstream infections; therefore, by investigator or infection control professional review, if any isolate from a polymicrobial culture met the necessary criteria, the blood culture was classified as a hospital-acquired, primary, CVC-associated bloodstream infection. We present the results of comparisons for the blood cultures that were evaluated by all methods. For calculation of sensitivity, specificity, and predictive values, we considered the investigator review to be the reference standard. Next, we calculated the agreement between investigator review and the other methods using the kappa statistic ([kappa]) (11). Since all organisms that were not common skin commensals were considered an infection, we included only common skin commensals to evaluate the rule distinguishing infection versus contaminant contaminant /con·tam·i·nant/ (kon-tam´in-int) something that causes contamination. contaminant something that causes contamination. . We report bloodstream infection rates per 1,000 patient-days for certain units in the hospital. Hospital units were aggregated according to according to prep. 1. As stated or indicated by; on the authority of: according to historians. 2. In keeping with: according to instructions. 3. the type of patient-care delivered, as identified by hospital personnel. For example, data from all nonintensive care medical wards were aggregated. Also, because of the relatively low number of patient-days in the burn, trauma, and neurosurgical intensive-care units (ICU ICU intensive care unit. ICU abbr. intensive care unit ICU see intensive care unit. ICU ), we aggregated the bloodstream infection rates for these units and report them as specialty ICUs. We calculated the Pearson correlation coefficient Correlation Coefficient A measure that determines the degree to which two variable's movements are associated. The correlation coefficient is calculated as: for bloodstream infection rates determined by investigator review versus other methods, stratified stratified /strat·i·fied/ (strat´i-fid) formed or arranged in layers. strat·i·fied adj. Arranged in the form of layers or strata. by hospital unit. Since only a sample of blood cultures was evaluated at Cook County Hospital, the rates were adjusted to account for the unit-specific sampling fraction. We also calculated the Pearson correlation coefficient, comparing the number of bloodstream infections per month identified by investigator review versus the other methods. All analyses were performed by using SAS (1) (SAS Institute Inc., Cary, NC, www.sas.com) A software company that specializes in data warehousing and decision support software based on the SAS System. Founded in 1976, SAS is one of the world's largest privately held software companies. See SAS System. statistical package version 8.02 (SAS Institute SAS Institute Inc., headquartered in Cary, North Carolina, USA, has been a major producer of software since it was founded in 1976 by Anthony Barr, James Goodnight, John Sall and Jane Helwig. Inc., Cary, NC). Results At Cook County Hospital, 104 positive blood cultures from 99 patients were evaluated by all methods (Figure 2A). Of the 99 patients, most were male (58%) and were cared for in non-ICUs (65%); the median patient age was 52 years. Of the 104 patients with positive blood cultures, 83 (79%) were determined to have infection by investigator review, 55 (53%) had primary bloodstream infection, and 39 (37.5%) had hospital-acquired, primary, CVC-associated bloodstream infection. The most common organisms were coagulase-negative staphylococci staph·y·lo·coc·cus n. pl. staph·y·lo·coc·ci A spherical gram-positive parasitic bacterium of the genus Staphylococcus, usually occurring in grapelike clusters and causing boils, septicemia, and other infections. (n = 45), Staphylococcus aureus Staphylococcus au·re·us n. A bacterium that causes furunculosis, pyemia, osteomyelitis, suppuration of wounds, and food poisoning. Staphylococcus aureus Staphylococcus pyogenes (n = 23), Enterococcus enterococcus /en·tero·coc·cus/ (en?ter-o-kok´us) pl. enterococ´ci an organism belonging to the genus Enterococcus. Enterococcus /En·tero·coc·cus/ ( spp. (n = 11), Pseudomonas aeruginosa Pseudomonas aeruginosa A normal soil inhabitant and human saprophyte that may contaminate various solutions in a hospital, causing opportunistic infection in weakened Pts Clinical Infective endocarditis in IVDAs, RTIs, UTIs, bacteremia, meningitis, 'malignant' (n = 4), Escherichia coli Escherichia coli (ĕsh'ərĭk`ēə kō`lī), common bacterium that normally inhabits the intestinal tracts of humans and animals, but can cause infection in other parts of the body, especially the urinary tract. (n = 4), and Candida albicans Candida albicans, n a pathogenic yeast, which is the causal agent of thrush, vaginal infections, and systemic candidiasis. Candida albicans (n = 4); nine (8.7%) infections were polymicrobial. [FIGURE 2 OMITTED] At Provident Hospital, 40 positive blood cultures were eligible for investigator review; 31 cultures from 28 patients were evaluated by all methods (Figure 2B). Of the 28 patients, most were male (54%) and cared for in non-ICUs (68%); the median patient age was 60 years. Of the 31 patients whose cultures were evaluated by all methods, 29 (94%) were determined to have infection by investigator review, 17 (55%) were primary, and 9 (29%) were hospital-acquired, primary CVC-associated bloodstream infection. The most common organisms were S. aureus The aureus (pl. aurei) was a gold coin of ancient Rome valued at 25 silver denarii. The aureus was regularly issued from the 1st century BC to the beginning of the 4th century AD, when it was replaced by the solidus. (n = 9), coagulase-negative staphylococci (n = 6), Enterococcus spp. (n = 5), P. aeruginosa (n = 3), E. coli E. coli: see Escherichia coli. E. coli in full Escherichia coli Species of bacterium that inhabits the stomach and intestines. E. coli can be transmitted by water, milk, food, or flies and other insects. (n = 2), and C. albicans (n = 2); no polymicrobial infections occurred. Hospital versus Community-acquired Rule When we evaluated the hospital versus community-acquired rule at Cook County Hospital, the computer rule A had a slightly higher sensitivity, specificity, and [kappa] statistic than did the infection control professional review (Table 2). Only one computer rule was evaluated (Table 1). Infection versus Contamination Rule for Common Skin Commensals At Cook County Hospital, infection control professional review and computer rule B2 (which used microbiologic and pharmacy data) had similar performance (Table 2). Computer rule B1 (which used only microbiologic data) was less sensitive (55%) but had a similar [kappa] (0.45). Primary versus Secondary Rule At Cook County Hospital, infection control professional review and computer rule C2 had similar sensitivities, specificities, and [kappa] statistics. Both determinations had limited specificity, i.e., some secondary infections were misclassified as primary bloodstream infections. The 12 infection syndromes classified as primary by computer algorithm and secondary by investigator review were lower respiratory tract Noun 1. lower respiratory tract - the bronchi and lungs lung - either of two saclike respiratory organs in the chest of vertebrates; serves to remove carbon dioxide and provide oxygen to the blood (n = 5, 42%), intraabdominal (n = 3, 25%), skin or soft tissue (n = 2, 17%), or surgical site (n = 2, 17%); no urinary tract infection urinary tract infection (UTI), n infection in one or more of the structures that make up the urinary system. Occurs more often in women and is most commonly caused by bacteria. was misclassifled as a primary bloodstream infection by computer algorithm. Computer rule C1, which evaluated only culture results within a time flame around the blood culture acquisition date, had lower specificity than rule C2 (data not shown). Bloodstream Infection Algorithm For overall ability to detect hospital-acquired, primary, CVC-associated bloodstream infection, we found that the simplest method (computer determination of a positive culture plus manual CVC determination) performed better than infection control professional review ([kappa] = 0.48 vs. [kappa] = 0.37, Table 3). The best and worst performing computer algorithms had good performance ([kappa] = 0.49 and [kappa] = 0.42, respectively). When manual determination of a CVC was added to the best performing computer algorithm, the correlation was significantly better than the infection control professional review ([kappa] = 0.73, p = 0.002). At each hospital, the best performing computer algorithm, with or without manual CVC determination, performed better than infection control professional review. For both hospitals combined, the number of hospital-acquired, primary, CVC-associated bloodstream infections varied by method, investigator review (n = 48), infection control professional review (n = 56), positive culture plus manual CVC determination (n = 86), computer algorithm (n = 64), and computer algorithm plus manual CVC determination (n = 48). Comparison of the Monthly Variation At Cook County Hospital, when the number of hospital-acquired, CVC-associated bloodstream infections per month was considered, infection control professional review (r = 0.71) was not as well correlated with investigator review as the computer algorithm (r = 0.89) was (Figure 3). When we augmented the computer algorithm with manual CVC determination, the effect was minimal on the correlation between the monthly variations (data not shown). At Provident Hospital, the monthly number of bloodstream infections was too small to provide meaningful comparisons. [FIGURE 3 OMITTED] Comparisons of Unit-Specific Bloodstream Infection Rates At Cook County Hospital, the patient care unit--specific bloodstream infection rates determined by investigator review versus those determined by computer algorithm had the same rank from highest to lowest: surgical intensive care, medical intensive care, HIV HIV (Human Immunodeficiency Virus), either of two closely related retroviruses that invade T-helper lymphocytes and are responsible for AIDS. There are two types of HIV: HIV-1 and HIV-2. HIV-1 is responsible for the vast majority of AIDS in the United States. ward, surgical wards, specialty intensive care, step-down units, and medical wards (Figure 4). The bloodstream infection rates were well correlated between the investigator review and the computer algorithm or infection control professional review. At Provident Hospital, the bloodstream infection rates per 1,000 patient days were as follows: on the non ICUs, investigator review = 0.41, infection control professional review = 0.39, and computer algorithm 0.62; in the ICUs, investigator review 2.05, infection control professional review = 3.68, and computer algorithm = 3.68. [FIGURE 4 OMITTED] Discussion We used electronic data from clinical information systems to evaluate the accuracy of computer algorithms to detect hospital-acquired primary CVC-associated bloodstream infections. Compared with investigator chart review (our reference standard), we found that computer algorithms that used electronic clinical data outperformed manual review by infection control professionals. When the computer algorithm was augmented by manually determining whether a CVC was present, agreement with investigator review was excellent. These results suggest that automated surveillance for CVC-associated bloodstream infections by using electronic data from clinical information systems could supplement or even supplant sup·plant tr.v. sup·plant·ed, sup·plant·ing, sup·plants 1. To usurp the place of, especially through intrigue or underhanded tactics. 2. manual surveillance, which would allow infection control professionals to locus on other surveillance activities or prevention interventions. CDC's National Nosocomial Infection Nosocomial infection An infection that can be acquired in a hospital. ABPA is a nosocomial infection. Mentioned in: Allergic Bronchopulmonary Aspergillosis, Hospital-Acquired Infections, Pseudomonas Infections Surveillance (NNIS NNIS National Nosocomial Infection Surveillance System ) system reports CVC-associated, hospital-acquired, primary bloodstream infection rates. Determining whether a bloodstream infections is primary and catheter-associated is worthwhile because some prevention strategies differ for catheter-associated versus secondary bacteremias; e.g., the former can be prevented through proper catheter insertion, maintenance, and dressing care (2,12). However, hospitalwide bloodstream infection surveillance at the three Cook County Bureau of Health Services health services Managed care The benefits covered under a health contract hospitals is labor-intensive and estimated to consume, at a minimum, 452 person hours per year (9). This estimate is low because it does not include the time required to identify and list bacteremic bac·te·re·mi·a n. The presence of bacteria in the blood. bac te·re patients or
record these patients into an electronic database.Automated infection detection has several advantages, including the following: applying definitions consistently across healthcare facilities and over time, thus avoiding variations among infection control professionals' methods for case-finding and interpretations of the definitions; freeing infection control professionals' time to perform prevention activities; and expanding surveillance to non-ICUs, where CVCs are now common (13). Since positive blood culture results are central to the bloodstream infection definition and readily available electronically, adapting the bloodstream infection definition is relatively easy for computer algorithms. For other infection syndromes (e.g., hospital-acquired pneumonia hospital-acquired pneumonia Nosocomial pneumonia Infectious disease Pulmonary infection acquired during a hospital stay which is often more severe than community-acquired pneumonia Risk factors Immune compromise, alcoholism, elderly, aspiration due to intubation. ), the rules may be more difficult to construct. Despite the relative simplicity of bloodstream infection algorithms, many determinations, or "rules," had to be considered, and various options were considered for each. The rule for determining hospital versus community acquisition, i.e., a positive blood culture [greater than or equal to] 3 days after admission, performed well at Cook County Hospital but poorly at Provident Hospital (data not shown), where some community-acquired bloodstream infections were not detected until [greater than or equal to] 3 days after hospital admission. Since some of these positive blood cultures were caused by secondary bloodstream infections, these delays did not adversely affect the performance of the final algorithm, which incorporated additional rules. The computer rule for determining primary versus secondary bloodstream infection was problematic when the presumed source of these bloodstream infections was not culture-positive, usually for lower respiratory tract infections While often used as a synonym for pneumonia, the rubric of lower respiratory tract infection can also be applied to other types of infection including lung abscess, acute bronchitis, and emphysema. . We minimized this problem by evaluating nonblood culture results during a patient's length of stay; however, this solution would not be desirable for patient populations with prolonged pro·long tr.v. pro·longed, pro·long·ing, pro·longs 1. To lengthen in duration; protract. 2. To lengthen in extent. lengths of stay. The specificity of automated primary bloodstream infection detection could be improved by interpreting radiology reports or using International Classification of Disease codes International classification of disease codes, n. pr a comprehensive system of classification developed and maintained by the World Health Organization (WHO) for the purpose of coding and classifying data related to the causes of mortality. to automate pneumonia detection (14). To determine infection versus contamination for common skin commensals by including appropriate antimicrobial use for single positive blood cultures as a criterion for bloodstream infection, we may be evaluating physician prescribing behavior rather than identifying true bloodstream infections; i.e., some episodes of common skin commensals isolated only once are contaminants unnecessarily treated with antimicrobial drugs (15). Since the CDC's bloodstream infection definition includes this criterion, including antimicrobial use in our computer infection rule improved the performance of this algorithm. Despite the potential inaccuracy in·ac·cu·ra·cy n. pl. in·ac·cu·ra·cies 1. The quality or condition of being inaccurate. 2. An instance of being inaccurate; an error. , reporting the frequency of antimicrobial drug therapy for common skin commensals isolated only once may help healthcare facilities identify episodes of unnecessary drug therapy. Other investigators have tried to either fully automate infection detection or automate identification of patients who have a high probability of being infected in·fect tr.v. in·fect·ed, in·fect·ing, in·fects 1. To contaminate with a pathogenic microorganism or agent. 2. To communicate a pathogen or disease to. 3. To invade and produce infection in. (16-19). These studies demonstrate the feasibility of automated infection detection. Our study adds additional information by comparing a fully automated computer algorithm, a partially automated computer algorithm (including manual CVC determination), and infection control professional blood culture categorization to the investigators' manual evaluation. Our study has several limitations. Investigator review may have been influenced by knowledge of the computer algorithms; however, three of the four reviewers were not familiar with the details of the computer algorithms. In addition, our evaluation included only patients at a public community hospital or public teaching hospital, and our findings may not be generalizable gen·er·al·ize v. gen·er·al·ized, gen·er·al·iz·ing, gen·er·al·iz·es v.tr. 1. a. To reduce to a general form, class, or law. b. To render indefinite or unspecific. 2. to other healthcare facilities. In particular, several factors could influence the performance characteristics of both computer algorithm and manual surveillance, including the frequency of blood culture acquisition, CVC use, the distribution of pathogens, and the proportion of bloodstream infections categorized as secondary. Also, we expected better agreement between investigator and infection control professional reviews. Potentially, agreement could be improved by additional infection control professional training. The computer algorithm could also likely be improved by incrementally refining the algorithm or including additional clinical information. The cost of refining the algorithm with local data or including more clinical data would be a decrease in the generalizability or feasibility of the algorithms. Further, many hospital information systems have not been structured so that adverse event detection can be automated. The algorithms we used could be improved when hospital information systems evolve to routinely capture additional clinical data (e.g., patient vital signs) or process and interpret textual reports (e.g., radiograph radiograph /ra·dio·graph/ (-graf?) the film produced by radiography. ra·di·o·graph n. reports) (14,20,21). Reporting data to public health agencies electronically has recently become more common (22,23). One important and achievable patient safety initiative is reducing CVC-associated bloodstream infections (24). Traditional surveillance methods are too labor intensive Labor Intensive A process or industry that requires large amounts of human effort to produce goods. Notes: A good example is the hospitality industry (hotels, restaurants, etc), they are considered to be very people-oriented. See also: Capital Intensive, Trading Dollars to allow hospitalwide surveillance; therefore, NNIS has recommended focusing surveillance on ICUs. However, intravascular intravascular /in·tra·vas·cu·lar/ (in?trah-vas´ku-lar) within a vessel. in·tra·vas·cu·lar adj. Within one or more blood vessels. device use has changed and, currently, most CVCs may be outside ICUs (13). Using electronic data holds promise for identifying some infection syndromes, and hospitalwide surveillance may be feasible. Hospital information system vendors can play a key role in facilitating automated healthcare-associated adverse event detection. Our study demonstrates that to detect hospital-acquired primary CVC-associated bloodstream infections, using computer algorithms to interpret blood culture results was as reliable as a separate manual review. These findings justify efforts to modify surveillance systems to fully or partially automate bloodstream infection detection.
Table 1. Computer algorithms and corresponding NNIS system definitions
to categorize blood culture isolates, September 2001-February 2002,
Cook County Hospital, Chicago, Illinois (a)
Determination (b) Computer rule
Hospital acquired (A) Acquired blood culture [greater than or
equal to] 3 days after hospital admission
Infection (B1) Microbiology data: pathogen other than
CSC (c) cultured from blood, or
[greater than or equal to] 2 CSC isolates
recovered from blood within 5 days of initial
positive blood culture
(B2) Microbiology and pharmacy data: pathogen
cultured from blood or [greater than or equal to]
2 CSC (d) isolates within 5 days of initial
positive blood culture, or CSC cultured from
blood once and vancomycin administered within 3
days before until 1 day after isolate
identification
Secondary (C1) Time restricted: organism recovered from
bloodstream blood also recovered from a nonblood culture,
infection (BSI) (d) 3-7 days after the blood culture acquisition
date (d)
(C2) Length of stay: organism recovered from
blood also recovered from a nonblood culture
during the entire length of stay (d)
Central-venous (D) No algorithm developed, all BSI were
catheter (CVC) considered CVC associated
associated (e)
Determination (b) NNIS definitions
Hospital acquired No evidence infection present or incubating at
time of hospital admission, unless infection was
related to previous admission to this hospital
Infection Patient has at least one sign or symptom: fever
(>38[degrees]C), chills, or hypotension and at
least one of the following: pathogen cultured
from [greater than or equal to] 1 blood cultures,
CSC cultured from [greater than or equal to] 2
blood cultures drawn on separate occasions, CSC
cultured from at least 1 blood culture from
patient with intravenous line, and physician
institutes appropriate antimicrobial drug therapy
Secondary The organism cultured from the blood is related
bloodstream to an infection at another site
infection (BSI) (d)
Central-venous Vascular access device that terminated at or
catheter (CVC) close to heart or one of great vessels within
associated (e) the 48-hour period before BSI developed
(a) NNIS, National Nosocomial Infection Surveillance; CSC, common
skin contaminant; BSI, bloodstream infection.
(b) For each determination, if the computer rule or NNIS definition
was not met, the isolate was considered as one the following:
community acquired, a contaminant, primary BSI, or not CVC
associated.
(c) We used the examples of CSCs listed in the NNIS manual:
diphtheroids, Bacillus spp., Propionibacterium spp.,
coagulase-negative staphylococci, or micrococci.
(d) Catheter tip and stool cultures were excluded for both
algorithms. CSCs had to be cultured from a wound for the BSI to be
considered as a secondary BSI.
(e) Includes tunneled or nontunneled catheters inserted into the
suclavian, jugular, or femoral veins; pulmonary artery catheters;
hemodialysis catheter; totally implanted devices (ports);
peripherally inserted central catheters; and introducer sheaths.
Table 2. Positive blood cultures as categorized by computer rules
or infection control professional (ICP) review, compared to
investigator review, (a) Cook County Hospital, Chicago, IL
No. Sensiti-
Determination Method cultures (c) vity (%)
Hospital vs. community
acquisition Computer rule A 77 97
ICP review 77 94
Infection vs.
contamination (d) Computer rule B2 (e) 43 77
ICP review 43 77
Primary vs. secondary Computer rule C2 (f) 76 90
ICP review 76 83
Specificity
Determination Method (%) [kappa]
Hospital vs. community
acquisition Computer rule A 73 0.74
ICP review 67 0.62
Infection vs.
contamination (d) Computer rule B2 (e) 71 0.49
ICP review 76 0.53
Primary vs. secondary Computer rule C2 (f) 57 0.49
ICP review 64 0.48
(a) Our reference standard.
(b) The single best rule for each determination is displayed.
(c) Since all determinations were not made for each blood
culture, e.g., contaminants often were not further categorized,
the number of cultures evaluated varies.
(d) Infection determination is presented for common skin
commensals only; other organisms were considered as infections;
see Table 1 for definitions.
(e) Rule B2 evaluated microbiology and pharmacy results; see Table 1.
(f) Rule C2 evaluated microbiology results during the entire
length of stay; see Table 1.
Table 3. Comparing alternative methods for determining if positive
blood cultures represented a hospital-acquired, primary,
central-venous catheter-associated bloodstream infection, Cook County
and Provident Hospitals, Chicago, Illinois (a)
Method % sensitivity
Cook County Hospital (n = 104)
Investigator review (reference method) --
Infection control professional review 67
Positive blood culture + CVC determination (b) 100
Worst computer algorithm (rules A, B1, C1, D) (c) 72
Best computer algorithm (rules A, B2, C2, D) (d) 79
Computer algorithm + CVC determination (b) 79
Provident Hospital (n = 31)
Investigator review (reference method) --
Infection control professional review 56
Positive blood culture + CVC determination (b) 100
Worst computer algorithm (rules A, B1, C1, D) (c) 78
Best computer algorithm (rules A, B2, C2, D) (d) 89
Computer algorithm + CVC determination (b) 89
Summary for both hospitals (n = 135)
Investigator review (reference method) --
Infection control professional review 65
Positive blood culture + CVC determination (b) 100
Worst computer algorithm (rules A, B1, C1, D) (c) 72
Best computer algorithm (rules A, B2, C2, D) (d) 81
Computer algorithm + CVC determination (b) 81
Method % specificity
Cook County Hospital (n = 104)
Investigator review (reference method) --
Infection control professional review 75
Positive blood culture + CVC determination (b) 55
Worst computer algorithm (rules A, B1, C1, D) (c) 74
Best computer algorithm (rules A, B2, C2, D) (d) 72
Computer algorithm + CVC determination (b) 88
Provident Hospital (n = 31)
Investigator review (reference method) --
Infection control professional review 68
Positive blood culture + CVC determination (b) 59
Worst computer algorithm (rules A, B1, C1, D) (c) 64
Best computer algorithm (rules A, B2, C2, D) (d) 68
Computer algorithm + CVC determination (b) 95
Summary for both hospitals (n = 135)
Investigator review (reference method) --
Infection control professional review 74
Positive blood culture + CVC determination (b) 56
Worst computer algorithm (rules A, B1, C1, D) (c) 74
Best computer algorithm (rules A, B2, C2, D) (d) 72
Computer algorithm + CVC determination (b) 90
Method % PVP % PVN
Cook County Hospital (n = 104)
Investigator review (reference method) -- --
Infection control professional review 62 79
Positive blood culture + CVC determination (b) 57 100
Worst computer algorithm (rules A, B1, C1, D) (c) 62 81
Best computer algorithm (rules A, B2, C2, D) (d) 63 85
Computer algorithm + CVC determination (b) 79 88
Provident Hospital (n = 31)
Investigator review (reference method) -- --
Infection control professional review 42 79
Positive blood culture + CVC determination (b) 50 100
Worst computer algorithm (rules A, B1, C1, D) (c) 53 88
Best computer algorithm (rules A, B2, C2, D) (d) 53 94
Computer algorithm + CVC determination (b) 89 95
Summary for both hospitals (n = 135)
Investigator review (reference method) -- --
Infection control professional review 57 79
Positive blood culture + CVC determination (b) 56 100
Worst computer algorithm (rules A, B1, C1, D) (c) 62 81
Best computer algorithm (rules A, B2, C2, D) (d) 62 87
Computer algorithm + CVC determination (b) 81 90
Method [kappa] (95% CI)
Cook County Hospital (n = 104)
Investigator review (reference method) --
Infection control professional review 0.41 (0.24-0.59)
Positive blood culture + CVC determination (b) 0.48 (0.35-0.62)
Worst computer algorithm (rules A, B1, C1, D) (c) 0.44 (0.27-0.62)
Best computer algorithm (rules A, B2, C2, D) (d) 0.49 (0.33-0.66)
Computer algorithm + CVC determination (b) 0.67 (0.52-0.82)
(e)
Provident Hospital (n = 31)
Investigator review (reference method) --
Infection control professional review 0.22
(-0.13-0.56)
Positive blood culture + CVC determination (b) 0.46 (0.20-0.70)
Worst computer algorithm (rules A, B1, C1, D) (c) 0.35 (0.04-0.65)
Best computer algorithm (rules A, B2, C2, D) (d) 0.48 (0.19-0.76)
Computer algorithm + CVC determination (b) 0.84 (0.63-1.0)
(e)
Summary for both hospitals (n = 135)
Investigator review (reference method) --
Infection control professional review 0.37 (0.21-0.53)
(e)
Positive blood culture + CVC determination (b) 0.48 (0.36-0.60)
Worst computer algorithm (rules A, B1, C1, D) (c) 0.42 (0.27-0.57)
Best computer algorithm (rules A, B2, C2, D) (d) 0.49 (0.35-0.63)
Computer algorithm + CVC determination (b) 0.73 (0.61-0.85)
(e)
(a) PVP, predictive value positive; PVN, predictive value negative, CI,
confidence interval.
(b) Presence of a central-venous catheter (CVC) determined by
investigator medical record review.
(c) The computer algorithm with the worst agreement, which used only
microbiology data for the determination of infection vs. contaminant
(rule B1, Table 1), and an abbreviated time period for the determination
of primary vs. secondary (rule C1, Table 1).
(d) The computer algorithm with the best agreement, which used the
microbiology and pharmacy data for the determination of infection vs.
contaminant (rule B2, Table 1), and the entire length of stay for the
determination of primary vs. secondary (rule C2, Table 1).
(e) Agreement between investigator review and the best performing
computer algorithm plus CVC determination was significantly better than
between investigator and infection control professional reviews. i.e.,
p value < 0.05.
Acknowledgments We thank Nenita Caballes, Craig Conover, Delia DeGuzman, Leona DeStefano, Gerry Genovese gen·o·a n. A large jib used on a racing yacht. Also called genoa jib. [After Genoa.] Adj. 1. , Teresa Horan, Carmen Carmen throws over lover for another. [Fr. Lit.: Carmen; Fr. Opera: Bizet, Carmen, Westerman, 189–190] See : Faithlessness Carmen the cards repeatedly spell her death. [Fr. Houston, John Jernigan, Mary Alice Mary Alice Smith (born December 3, 1941 in Indianola, Mississippi, U.S.) is an Emmy Award and Tony Award winning actress. In 1987 she received a Tony for Best Featured Actress in a Play for her work in Fences. Lavin, Gloria Moye, and Thomas Rice Thomas Rice may mean…
Financial support was provided by Centers for Disease Control and Prevention Centers for Disease Control and Prevention (CDC), agency of the U.S. Public Health Service since 1973, with headquarters in Atlanta; it was established in 1946 as the Communicable Disease Center. cooperative agreement US0/CCU515853, Chicago Antimicrobial Resistance Project. References (1.) Kohn LT, Corrigan JM, Donaldson MS. To err is human "To Err is Human: Building a Safer Health System" is a groundbreaking report issued in 2000 by the U.S. Institute of Medicine which resulted in an increased awareness of U.S. medical errors. The push for patient safety that followed its release currently continues. : building a safer health system. In: Committee on quality of health care in America, Institute of Medicine report. Washington: National Academy of Press; 2000. (2.) O'Grady NE Alexander M, Dellinger EE Gerberding JL, Maki DG, McCormick RD, et al. 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Natural language processing Natural language processing Computer analysis and generation of natural language text. The goal is to enable natural languages, such as English, French, or Japanese, to serve either as the medium through which users interact with computer systems such as and its future in medicine. Acad Med. 1999;74:890-5. (22.) Panackal AA, M'ikanatha NM, Tsui FC, McMahon J, Wagner MM. Dixon BW, et al. Automatic electronic laboratory-based reporting of notifiable notifiable /no·ti·fi·a·ble/ (no?ti-fi´ah-b'l) necessary to be reported to a government health agency. notifiable necessary to be reported to the relevant government authority. Said of individual diseases. infectious diseases infectious diseases: see communicable diseases. ala large health system. Emerg Infect Dis. 2002;8:685-91. (23.) Effler P, Ching-Lee M, Bogard A, Leong MC, Nekomoto T. Jernigan D. Statewide system of electronic notifiable disease no·ti·fi·a·ble disease n. A disease that must be reported to public health authorities at the time it is diagnosed because it is potentially dangerous to human or animal health. Also called reportable disease. reporting from clinical laboratories: comparing automated reporting with conventional methods. JAMA. 1999:282:1845 50. (24.) Centers for Disease Control and Prevention. Monitoring hospital-acquired infections to promote patient safety--United States, 1990 1999. MMWR Morb Mortal Wkly Rep. 2000:49:149-53. Dr. Trick is an investigator in the Collaborative Research Unit at Stroger Hospital of Cook County, Chicago, Illinois. His research interests include evaluating the use of electronic data routinely collected during clinical encounters. William E. Trick, * Brandon M. Zagorski, ([dagger]) Jerome I. Tokars, * Michael O. Vernon, ([dagger]) Sharon F. Welbel, ([dagger] [double dagger double dagger n. A reference mark ( ) used in printing and writing. Also called diesis.Noun 1. ] [section]) Mary F. Wisniewski, ([dagger] [double dagger]) Chesley Richards, * and Robert A. Weinsteint ([dagger] [double dagger] [section]) * Centers for Disease Control and Prevention, Atlanta, Georgia, USA; ([dagger]) Chicago Antimicrobial Resistance Project, Chicago, Illinois, USA; ([double dagger]) Cook County Hospital, Chicago, Illinois, USA; and ([section]) Rush Medical College, Chicago, Illinois, USA Address for correspondence: William E. Trick, Collaborative Research Unit, Suite 1600, 1900 W Polk St., Chicago, IL 60612, USA; fax: 312-864-9694; email: wtrick@cchil.org |
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) used in printing and writing. Also called diesis.
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