Printer Friendly
The Free Library
14,550,258 articles and books
Member login
User name  
Password 
 
Join us Forgot password?

Chemistry by touch: blind scientist fashions new models of molecules.


In the world of chemistry, nature's architecture dominates the microscopic scene. A protein may show up as hundreds of clustered spheres, while in DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
, atoms spiral up a long helix. People appreciate chemical forms mainly with their eyes.

But what if a person cannot see? Can a blind person comprehend molecular structure?

"Blind students have struggled with molecular structures for years in studying chemistry," says Lawrence Scadden, the National Science Foundation's program director for persons with disabilities. "I'm one of them. I'm blind. I got my Ph.D. many years ago, and taking chemistry was difficult. It's hard to grasp molecular structures without asking someone to build a model."

Now, chemist William J. Skawinski, a postdoctoral research associate at the New Jersey Institute of Technology in Newark, is doing just that.

Sitting at his computer workstation, he puts the finishing touches finishing touches finish npl the finishing touches → der letzte Schliff

finishing touches nplultimi ritocchi mpl 
 on a 150-atom molecule he has just designed. Having made the calculations for a chemical destined des·tine  
tr.v. des·tined, des·tin·ing, des·tines
1. To determine beforehand; preordain: a foolish scheme destined to fail; a film destined to become a classic.

2.
 to bind to to contract; as, to bind one's self to a wife s>.

See also: Bind
 a receptor with lock-and-key precision, he enters information about its chemical structure and shape into his terminal. After formatting the data with his unique program, he feeds the file into a computer that controls a laser stereolithography The first 3D printing technology, which was pioneered by Chuck Hull of 3D Systems. See 3D printing.  machine.

Several hours later, a plastic model of the molecule emerges.

Skawinski, who is himself blind, has devised a system for translating descriptions of molecules into three-dimensional plastic models. "Originally, I got interested in this project because, being blind, I thought it would help me work with molecules represented on computer screens," he says. "But then I realized that this would be a useful research tool for sighted chemists as well."

In a science rich with glitzy glitz   Informal
n.
Ostentatious showiness; flashiness: "a garish barrage of show-biz glitz" Peter G. Davis.

tr.v.
 computerized pictures, Skawinski's system permits a chemist to design a molecule, image it on a computer screen, and create a three-dimensional representation directly from calculations. The final product accurately portrays the atoms' relations to one another.

The secret lies in laser stereolithography, a technology that forges models quickly from a light-sensitive liquid polymer (SN: 8/3/91, p.72). Most commonly used in industry for modeling new parts, stereolithography has been slow to find its way into scientific laboratories. Whereas computer-aided design computer-aided design (CAD) or computer-aided design and drafting (CADD), form of automation that helps designers prepare drawings, specifications, parts lists, and other design-related elements using special graphics- and calculations-intensive  systems easily meet auto and aerospace needs, they have not been adapted for use in basic science. The critical missing link has been software that can convert molecular descriptions into a form the machine can interpret.

Skawinski has supplied that link in the form of a computer procedure that creates molecular prototypes directly from quantum mechanical calculations.

Stereolithography begins with an elevated table in a 10-inch-deep vat of liquid plastic. "The table sits at the top of the tank, covered by a polymer film," Skawinski explains. "A laser traces the bottom of the molecule [to be modeled], hardening a slice. The table eases down, and the laser draws another slice." The table falls gradually through the liquid, allowing the laser to forge the model from bottom to top. "When it's done (jargon) When It's Done - A manufacturer's non-answer to questions about product availability. This answer allows the manufacturer to pretend to communicate with their customers without setting themselves any deadlines or revealing how behind schedule the product really is. , you get one solid piece," he says. "Then we cure it in an ultraviolet oven."

It takes 8 to 12 hours to fabricate the average molecular model. The final product emerges as a translucent sculpture. Each atom has a textured surface that reveals details of the element and its bonds.

"The beauty of this system is that the models come directly from X-ray crystallography X-ray crystallography, the study of crystal structures through X-ray diffraction techniques. When an X-ray beam bombards a crystalline lattice in a given orientation, the beam is scattered in a definite manner characterized by the atomic structure of the lattice.  or quantum mechanical data, so they're extremely accurate," says New Jersey Tech chemistry professor Carol A. Venanzi, who worked with Skawinski to develop the system. "With these, you can represent a molecule's transition states and electrostatic forces, which can't be done with standard models."

The molecular modeling system has proved itself as a research tool, Venanzi says. It enabled her team to see how specific molecules bind to proteins, how a drug binds to a cell's receptor, and how sucrose binds to taste buds taste buds taste nplGeschmacksknospen pl .

"We've made models of several compounds, and just having them around has made a difference," she adds. "We could look at them, fit them together, compare them with other molecules. You can see more clearly how each molecule's structure relates to its biological activity."

Even with high-quality software, she says, it's hard to grasp a molecule's three-dimensional qualities from a computer screen.

"This project could have a major impact on chemistry education, which is one of our reasons for supporting it," says Richard L. Hilderbrandt, a chemist at NSF NSF - National Science Foundation . "I've seen these models. They can be tremendously helpful . . . in understanding chemical structures."

While many new computer aids for the blind have come along in recent years, Hilderbrandt maintains that "there have been few in chemistry. So this is an important new tool."

"There's a great need for tactual tac·tu·al
adj.
Tactile.
 tools in teaching chemistry to students who are blind, or disabled, or who simply learn better by holding something in their hands," adds Scadden. "Tactile models reinforce the learning process better than drawings."

Roughly 1.1 million U.S. residents are legally blind, according to the American Foundation for the Blind American Foundation for the Blind,
n.pr an advocacy group for individuals with visual disabilities.
. Best estimates hold that several thousand working scientists are blind or visually impaired.

Yet "blind and disabled people are severely underrepresented un·der·rep·re·sent·ed  
adj.
Insufficiently or inadequately represented: the underrepresented minority groups, ignored by the government. 
 in the scientific community," Scadden says. "With the right educational technologies, more students with disabilities could participate in science and choose it as a career."

"There's still a great barrier for blind people in mathematics and science," concurs Virginia W. Stern, director of the project on science, technology, and disability at the American Association for the Advancement of Science American Association for the Advancement of Science (AAAS), private organization devoted to furthering the work of scientists and improving the effectiveness of science in the promotion of human welfare.  in Washington, D.C. "There's a tremendous need for better teaching tools at every academic level."

Skawinski expects people in many fields -- biology, physics, toxicology -- to benefit from his system. "We're trying to expand the system to model other three-dimensional physical phenomena, like electrical or gravitational fields around an object, or even mathematical functions."

"The limit, really," he observes, "is a person's imagination."
COPYRIGHT 1995 Science Service, Inc.
No portion of this article can be reproduced without the express written permission from the copyright holder.
Copyright 1995, Gale Group. All rights reserved. Gale Group is a Thomson Corporation Company.

 Reader Opinion

Title:

Comment:



 

Article Details
Printer friendly Cite/link Email Feedback
Title Annotation:chemist William J. Skawinski
Author:Lipkin, Richard
Publication:Science News
Date:Feb 25, 1995
Words:967
Previous Article:Indo-European pursuits: scientific paths diverge in the quest for ancient Eurasians.(Cover Story)
Next Article:Living longer: conscientious kids....(research indicates conscientious children live longer than impulsive peers)(Brief Article)
Topics:



Related Articles
Self-assembling molecular receptors.
Inching closer to molecular electronics.
Pinatubo's impact spreads around the globe. (climatic effect of Philippine volcano)
Electric fields orient chilled molecules. (controlling chemical reactions)
Simulating how molecules move. (mathematicians improve algorithm used to model molecule movement) (Brief Article)
Dances with molecules: controlling chemical reactions with laser light.(Cover Story)
Chemistry computations earn Nobel prize.(computational methods describe molecular properties)(Brief Article)
Innovative crystal's got plenty o' nuthin'.(new crystal architecture devised using organic material called MOF-5)(Brief Article)
A new molecule and a new signature. (Chemistry).(tetranitrogen)(Brief Article)
Chemical knot: scientists assemble legendary symbol by interlocking molecules.(This Week)

Terms of use | Copyright © 2009 Farlex, Inc. | Feedback | For webmasters | Submit articles