CURRENT UNDERSTANDING OF THE GENETIC BASIS OF READING AND SPELLING DISABILITY.Abstract. Dyslexia dyslexia (dĭslĕk`sēə), in psychology, a developmental disability in reading or spelling, generally becoming evident in early schooling. To a dyslexic, letters and words may appear reversed, e.g. is a common developmental disorder developmental disorder Psychiatry An impairment in normal development of language, motor, cognitive and/or motor skills, generally recognized before age 18 which is expected to continue indefinitely and constitutes a substantial impairment Etiology Mental of unknown etiology. Behavioral and biological studies of dyslexia are complicated by its phenotypic phe·no·type n. 1. a. The observable physical or biochemical characteristics of an organism, as determined by both genetic makeup and environmental influences. b. heterogeneity het·er·o·ge·ne·i·ty n. The quality or state of being heterogeneous. heterogeneity the state of being heterogeneous. and the lack of uniformly applied diagnostic criteria. In the past 20 years, increasingly powerful genetic technologies and statistical methodologies have been applied to identify genomic locations for genes involved in this complex heterogeneous disorder. This article reviews studies addressing the genetic contributions to dyslexia. RESEARCH DEFINITION OF DYSLEXIA Dyslexia, or specific reading disability, is a common and complex disorder manifested by unexpected difficulty in learning to read not attributable to general cognitive delay, psychiatric or neurologic neurologic /neu·ro·log·ic/ (-loj´ik) pertaining to neurology or to the nervous system. Neurologic Having to do with the nervous system. disorder, sensory impairment or inadequate instruction. It is characterized by difficulties in learning to recognize letters, subsequent difficulties in pronouncing pro·nounc·ing adj. Relating to, designed for, or showing pronunciation: a pronouncing dictionary. words out of sentence context, and often persistent difficulties in fluent oral reading and spelling (Berninger, 2000). Diagnosis is usually made during the elementary school elementary school: see school. years, but is complicated by variations in educational experience, changes in phenotypic expression across development (Berninger, Abbott, Thomson, & Raskind, 2001), and the lack of a standard protocol for which assessment measures to use. Three related language processes useful in making the diagnoses and predictive of both normal and disabled reading include (a) phonological pho·nol·o·gy n. pl. pho·nol·o·gies 1. The study of speech sounds in language or a language with reference to their distribution and patterning and to tacit rules governing pronunciation. 2. processes -- the ability to code spoken words into short-term memory short-term memory n. Abbr. STM The phase of the memory process in which stimuli that have been recognized and registered are stored briefly. , manipulate component sounds, and reproduce words without the aid of semantic cues; (b) rapid automatized naming (Denckla & Rudel, 1976; Wolf, Bally bally Adjective, adv Brit old-fashioned, slang extreme or extremely: a bally nuisance, he's too bally charming for his own good Adj. 1. , & Morris, 1986) or switching (Wolf, 1986) of familiar visual symbols; and (c) orthographic or·tho·graph·ic also or·tho·graph·i·cal adj. 1. Of or relating to orthography. 2. Spelled correctly. 3. Mathematics Having perpendicular lines. processes -- the ability to code written words into short-term memory and to represent them in long-term memory long-term memory n. Abbr. LTM The phase of the memory process considered the permanent storehouse of retained information. long-term memory (reviewed in Berninger et al., 2001). Dyslexia is believed to be a language-based disorder, typically associated with a phonological core deficit primarily manifested by difficulty in phoneme phoneme Smallest unit of speech distinguishing one word (or word element) from another (e.g., the sound p in tap, which differentiates that word from tab and tag). The term is usually restricted to vowels and consonants, but some linguists include differences of pitch, awareness and phonological decoding de·code tr.v. de·cod·ed, de·cod·ing, de·codes 1. To convert from code into plain text. 2. To convert from a scrambled electronic signal into an interpretable one. 3. (e.g., Liberman, Shankweiler, Fischer, & Carter, 1974; Pennington, Van Orden, Smith, Green, & Haith, 1990; Vellutino, 1979; Wagner & Torgesen, 1987), but it may also involve deficits in physiological mechanisms of the visual system (e.g., Eden et al., 1996). There is general agreement that dyslexia is not a simple matter of letter reversals. Although with appropriate educational intervention, most affected individuals eventually achieve some proficiency in reading or writing skills, perceived or documentable deficits often persist into adulthood (Bruck, 1990, 1992, 1993; Felton Naylor, & Wood, 1990; Maughan & Hagell, 1996; Pennington et al., 1990; Shaywitz et al., 1999) and these disabilities may have long-term educational, economic, and social repercussions repercussions npl → répercussions fpl repercussions npl → Auswirkungen pl . When there is a genetic component to the etiology of a disorder, it is possible to find contributing genes and delineate the biochemical and physiologic pathways involved. Such information may be of practical benefit for therapy as well as for diagnosis. Reading and spelling disabilities are not single distinct entities but comprise a spectrum of disorders. Studies of the genes involved and their interactions with each other hold promise for determining whether there are distinct genetic subtypes on a molecular level or whether the clinically heterogeneous phenotypes are different manifestations of the same gene defects. Not all children with reading disabilities respond to any given intervention. Knowledge of the biologic distinctions among different learning disabilities subtypes might provide a means to triage triage Division of patients for priority of care, usually into three categories: those who will not survive even with treatment; those who will survive without treatment; and those whose survival depends on treatment. individuals to receive specific types of instruction. The wide variation in age during which children acquire basic reading and writing skills contributes to the delay that often occurs in making a diagnosis of dyslexia. Educators may be reluctant to refer a student for evaluation for fear of labeling a child dyslexic dys·lex·ic or dys·lec·tic adj. Of or relating to dyslexia. n. A person affected by dyslexia. when he/she is in the lower portion of the normal range for these developmental milestones Developmental milestones are tasks most children learn, or physical developments, that commonly appear in certain age ranges. For example:
mon·o·gen·ic adj. 1. Of or relating to monogenesis; monogenetic. 2. Mendelian disorders mendelian disorder Clinical genetics A popular term for any genetic disease which follows simple mendelian patterns of inheritance–eg, autosomal recessive disorders, such as cystic fibrosis. Cf Nonmendelian disorder. can serve as "markers" for the disorders even before they are clinically apparent and, if preventive therapies exist, developing "screening tests" may be appropriate. For complex disorders in which multiple genes of small effect contribute to the phenotypes, identifying the genes is the relatively "easy" phase. Understanding how these genes work in conjunction with other genes and environmental factors will be much more difficult. It is likely that no one gene is sufficient to cause the disorder with high frequency. The genotypes of some set of genes may merely alter the probability that a person will be affected. Whether and to what degree at-risk individuals develop reading or spelling problems may involve stochastic processes stochastic process In probability theory, a family of random variables indexed to some other set and having the property that for each finite subset of the index set, the collection of random variables indexed to it has a joint probability distribution. (chance events) as well as environmental factors such as quality of instruction. For these reasons, genetic information will more likely be a tool for assigning relative risk for reading or spelling disability than a true diagnostic test. Despite the complexity of potentially multiple interacting genes and environmental influences, inherited risk factors have recently been identified for other Complex disorders, including late-onset Alzheimer's disease Alzheimer's disease (ăls`hī'mərz, ôls–), degenerative disease of nerve cells in the cerebral cortex that leads to atrophy of the brain and senile dementia. (apo E4; Corder et al., 1993) and type II diabetes Type II diabetes Type II diabetes is the most common form of diabetes and usually appears in middle aged adults. It is often associated with obesity and may be delayed or controlled with diet and exercise. Mentioned in: Diabetic Ketoacidosis (calpain-10; Horikawa et al., 2000) and may also be found for dyslexia. EVIDENCE OF A GENETIC CONTRIBUTION TO READING AND SPELLING DISABILITY A variety of observations have led to the consensus that reading and spelling disabilities have genetic bases. A complete description of the molecular biology molecular biology, scientific study of the molecular basis of life processes, including cellular respiration, excretion, and reproduction. The term molecular biology was coined in 1938 by Warren Weaver, then director of the natural sciences program at the Rockefeller and statistical methods is beyond the scope of this review; a more detailed explanation of these concepts is contained in an excellent tutorial by Olson, Witte, and Elston (1999). Familial Aggregation familial aggregation n. Occurrence of a trait in more members of a family than can be readily accounted for by chance. When a phenotype phenotype (fē`nətīp'): see genetics. phenotype All the observable characteristics of an organism, such as shape, size, colour, and behaviour, that result from the interaction of its genotype (total genetic makeup) with has a genetic basis, there is greater concordance concordance /con·cor·dance/ (-kord´ins) in genetics, the occurrence of a given trait in both members of a twin pair.concor´dant con·cor·dance n. or correlation among relatives than would be predicted by the overall population frequency. Familial aggregation of reading and spelling disabilities has been observed repeatedly since the first description of "word blindness word blindness n. See alexia. " in the late 1890s (e.g., Gilger, Borecki, DeFries, & Pennington, 1994; Hinshelwood, 1907; Raskind, Hsu, Berninger, Thomson, & Wijsman, 2001; Schulte-Korne, Deimel, Muller, Gutenbrunner, & Remschmidt, 1996; Tallal, Ross, & Curtiss, 1989; Vogler, DeFries, & Decker, 1985; Wolff & Melngailis, 1994). The risk of reading impairment in first-degree relatives of a person with reading disability exceeds that in the general population (e.g., Gilger, Pennington, & DeFries, 1991; Hallgren, 1950; Pennington et al., 1991), and the risk and severity of the disorder increases as the number of parents affected increases (Gilger, Hanebuth, Smith, & Pennington, 1996; Wolff & Melngailis, 1994). However, the observation of familial aggregation is not sufficient to prove a genetic basis, as many environmentally mediated phenotypes also cluster in families. Examples include diseases such as lead poisoning lead poisoning or plumbism (plŭm`bĭz'əm), intoxication of the system by organic compounds containing lead. or asbestosis asbestosis Lung disease caused by long-term inhalation of asbestos fibres. A pneumoconiosis found primarily in asbestos workers, asbestosis is also seen in people living near asbestos industries. and behaviors such as speaking French or religious observance. Twin Studies The magnitudes of the genetic and environmental contributions to the variance in a phenotype can be estimated by comparing the concordance rates concordance rate n. A quantitative statistical expression for the concordance of a given genetic trait, especially in pairs of twins in genetic studies. in monozygotic monozygotic /mono·zy·got·ic/ (mon?o-zi-got´ik) pertaining to or derived from a single zygote; as monozygotic twins. mon·o·zy·got·ic adj. (MZ) twin pairs and same-sex dizygotic dizygotic /di·zy·got·ic/ (di?zi-got´ik) pertaining to or derived from two separate zygotes. di·zy·got·ic or di·zy·gous adj. Derived from two separately fertilized eggs. (DZ) twin pairs. MZ twins should be more alike than DZ twins for traits that have a genetic component. In one extreme, for a trait that is entirely genetically determined, MZ twins should be entirely concordant because they share all their genes, whereas DZ twins would be less alike because they share, on average, only 50% of their genes. For the same reason, the DZ co-twins of probands Proband is a term used most often in medical genetics and other medical fields to denote a particular subject (person or animal) being studied or reported on. On pedigrees, the proband is noted with an arrow and the box (male) or circle (female) shaded accordingly. selected for a phenotype in one tail of a distribution should regress REGRESS. Returning; going back opposed to ingress. (q.v.) halfway to the population mean. In contrast, for a phenotype that is caused entirely by environmental factors, MZ and DZ twin pairs should be equally concordant because, in theory, co-twins of both types of pairs share environmental exposures. Nonshared environmental factors must also be considered, and the relative contributions of all three influences (genetic, shared environmental, and nonshared environmental) on a phenotype can be estimated from the concordance patterns observed. In fact, the observed concordance rates for reading and spelling disabilities in twins suggest that both genetic and environmental factors are important. Although there is a higher concordance for deficits in reading and spelling in MZ twin pairs than in DZ twin pairs, even in MZ twins the concordance is not 100% (Olson, Forsberg, & Wise, 1994; Pennington et al., 1991; Reynolds et al., 1996). MZ twins are also more similar than DZ twins on continuous component measures of reading and spelling (DeFries, Fulker, & La Buda, 1987; Reynolds et al., 1996; Stevenson, Graham, Fredman, & McLoughlin, 1987) as well as combined factor scores based on a combination of continuous measures (DeFries, Olson, Pennington, & Smith, 1991a). In addition, co-twins of DZ probands in the low end of the distribution for reading and spelling measures show greater regression to the mean than do co-twins of MZ probands (DeFries et al., 1987; DeFries, Stevenson, Gillis, & Wadsworth, 1991b). Twin studies have also supported the hypothesis that the processes involved in reading and spelling are substantially heritable her·i·ta·ble adj. 1. Capable of being passed from one generation to the next; hereditary. 2. Capable of inheriting or taking by inheritance. . Although heritability heritability /her·i·ta·bil·i·ty/ (her?i-tah-bil´i-te) the quality of being heritable; a measure of the extent to which a phenotype is influenced by the genotype. her·i·ta·bil·i·ty n. 1. of phonological coding was significant and heritability of orthographic coding, measured by the ability to distinguish between written real and pseudoword homonyms, was reported to be nonsignificant non·sig·nif·i·cant adj. 1. Not significant. 2. Having, producing, or being a value obtained from a statistical test that lies within the limits for being of random occurrence. in one study (Olson, Wise, Connors, Rack, & Fulker, 1989), the same authors subsequently found that heritability of orthographic coding was similar in magnitude to that of phonological coding (Olson et al., 1994). The heritability of components of reading and spelling disability -- word recognition, phonological coding, phonological awareness Phonological awareness is the conscious sensitivity to the sound structure of language. It includes the ability to auditorily distinguish parts of speech, such as syllables and phonemes. and orthographic coding -- is approximately 47-60% whereas shared environmental factors account for 29-48% of the phenotypic variance. Nonshared environmental factors appear to make a smaller contribution. Patterns of Familial Transmission The frequent finding of reading and spelling disabilities in multiple relatives of a child with reading disabilities has been observed empirically by many researchers, but the pattern in the pedigrees often does not fit a simple Mendelian mode of inheritance (e.g., Finucci, Guthrie, Childs, Abbey, & Childs, 1976; Omenn & Weber, 1978). The mode of inheritance is of great practical importance. If dyslexia were simply the lower tail of the normal distribution of reading skill (Shaywitz et al., 1992a) in which multiple genes contribute equally small effects (i.e., a polygenic polygenic /poly·gen·ic/ (pol?e-jen´ik) pertaining to or determined by several different genes. pol·y·gen·ic adj. or multifactorial multifactorial /mul·ti·fac·to·ri·al/ (mul?te-fak-tor´e-al) 1. of or pertaining to, or arising through the action of many factors. 2. trait), even with the current rapidly advancing technology it may be difficult, if not impossible, to identify the genes, because no one gene accounts for enough of the variation to be distinguished from the rest. On the other hand, if there are genes that contribute even modest effects above the polygenic background (called a "major" gene effect), they may be identifiable. A quantitative trait locus Inheritance of quantitative traits refers to the inheritance of a phenotypic characteristic that varies in degree and can be attributed to the interactions between two or more genes and their environment (also called Polygenic inheritance). (QTL QTL Quantitative Trait Loci QTL Qualified Thrift Lender QTL Qualcomm Technology Licensing QTL Quality Teaching and Learning (Centers for Quality Teaching and Learning; Raleigh, NC) QTL True Heading (radiotelegraphy) ) is one that contributes to a phenotype that may be measured on some continuous scale. The phenotype may be influenced by more than one gene and the phenotype associated with a particular combination of alleles (genotype genotype (jēn`ətīp'): see genetics. genotype Genetic makeup of an organism. The genotype determines the hereditary potentials and limitations of an individual. ) may be variable, in part because of environmental contributions to the variation. A mixed model is one that has both major gene and polygenic or multifactorial components. Single-gene inheritance (and the individual genes that contribute to an oligogenic or multifactorial phenotype) can be autosomal recessive Autosomal recessive A pattern of inheritance in which both copies of an autosomal gene must be abnormal for a genetic condition or disease to occur. An autosomal gene is a gene that is located on one of the autosomes or non-sex chromosomes. , autosomal dominant Autosomal dominant A pattern of inheritance in which only one of the two copies of an autosomal gene must be abnormal for a genetic condition or disease to occur. An autosomal gene is a gene that is located on one of the autosomes or non-sex chromosomes. , additive (codominant co·dom·i·nant adj. Of or relating to an equal degree of dominance of two genes, both being expressed in the phenotype of the individual. ), sex-chromosome linked, or mitochondrial mitochondrial pertaining to mitochondria. mitochondrial RNAs a unique set of tRNAs, mRNAs, rRNAs, transcribed from mitochondrial DNA by a mitochondrial-specific RNA polymerase, that account for about 4% of the total cell RNA that . One way to clarify the genetic contribution to a phenotype is to develop a mathematical model
allele Any one of two or more alternative forms of a gene that may occur alternatively at a given site on a chromosome. of the gene have on the type and severity of the problem? This process, called segregation analysis segregation analysis n. The determination of the number of progeny that have inherited distinct and mutually exclusive phenotypes. , fits models of transmission to empiric data and provides parameters that can be used in linkage analyses (reviewed in Pennington et al., 1991). These parameters include estimates of the disease gene frequency, the relative effects of genetic and nongenetic influences, and the existence of etiologic heterogeneity. In complex segregation analysis, a single Mendelian gene is modeled, other genetic factors are combined into one polygenic factor, and a single model that best fits the data can be chosen. There are now analysis approaches that employ a Bayesian Monte-Carlo Markov-Chain stochastic By guesswork; by chance; using or containing random values. stochastic - probabilistic method and allow an estimate to be made of the number of genes that are involved (briefly described in Wijsman et al., 2000). There are potential pitfalls to these modeling studies, however. Even when a disorder has no major gene component, rare families with what appears to be single-gene transmission may be found. If studies are done on a biased collection of such families, the incorrect conclusion that the disorder is a single-gene defect can be reached. Genetic heterogeneity -- when different genetic mechanisms can result in the same phenotype -- must also be considered. In addition, unless accounted for, age, gender or other influences on the phenotype may confound con·found tr.v. con·found·ed, con·found·ing, con·founds 1. To cause to become confused or perplexed. See Synonyms at puzzle. 2. the analyses, especially when a categorical That which is unqualified or unconditional. A categorical imperative is a rule, command, or moral obligation that is absolutely and universally binding. Categorical is also used to describe programs limited to or designed for certain classes of people. trait is modeled. Three different approaches have provided evidence for family transmission patterns of dyslexia-associated phenotypes consistent with Mendelian modes of inheritance. Segregation analyses of reading disability defined categorically produced evidence for a sex-influenced, dominant or additive major gene effect in three independently sampled populations of dyslexic families (Pennington et al., 1991). The disorder-allele frequency at the major locus was estimated at between 3% and 5%. However, a multifactorial-polygenic mechanism seemed to be operating in a fourth population. Analysis of a quantitative discriminant dis·crim·i·nant n. An expression used to distinguish or separate other expressions in a quantity or equation. score based on multiple measures found evidence for involvement of one or more dominant genes with a high-frequency "disease" allele of low penetrance penetrance /pen·e·trance/ (pen´i-trins) the frequency with which a heritable trait is manifested by individuals carrying the principal gene or genes conditioning it. pen·e·trance n. in a population of nuclear families ascertained through nonreading disabled probands (Gilger et al., 1994). Evidence for a major-gene mode of inheritance for quantitative scores on measures of two reading-related processes -- phonological nonword memory and digit span -- was obtained by a combination of oligogenic-trait and complex segregation analyses (Wijsman et al., 2000). Taken together, these lines of research suggest that reading disability, as well as the phonological and orthographic skills contributing to reading, are heritable, but only 40-70% of the individual differences result from genetic factors. THE SEARCH FOR GENES INVOLVED IN READING AND SPELLING Positional Cloning Studies that exploit the naturally occurring DNA DNA: see nucleic acid. DNA or deoxyribonucleic acid One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes. variations between individuals can lead to identification of genes that are involved in a disorder even when the function of the gene is not known. This process, called "reverse genetics reverse genetics methods such as antisense nucleic acids and site-directed mutagenesis that are used to selectively study gene function. Contrasts with classical genetics which depends on the isolation and analysis of cells (animals) with random mutations that can be identified. " or "positional cloning," can involve a variety of approaches such as linkage analyses, association studies, and linkage disequilibrium linkage disequilibrium n. The nonrandom association between two or more alleles such that certain combinations of alleles are more likely to occur together on a chromosome than other combinations of alleles. studies. The gene is found primarily on the basis of its location in the genome. The objective of a genetic linkage Genetic linkage occurs when particular genetic loci or alleles for genes are inherited jointly. Genetic loci on the same chromosome are physically connected and tend to segregate together during meiosis, and are thus genetically linked. analysis is to identify regions of the genome that are nonrandomly associated with a phenotype. With the exception of genes on the sex chromosomes sex chromosome Either of a pair of chromosomes that determine whether an individual is male or female. The sex chromosomes of mammals are designated X and Y; in humans, they constitute one pair of the total 23 pairs of chromosomes. , all people carry two copies of each gene -- one copy inherited from each of the two parents. For some of these pairs of genes, the two copies (the alleles) differ within or between individuals. A straightforward example is the ABO blood type ABO blood type Blood type based on the presence or absence of the A and B antigens on the red blood cells. Mentioned in: Blood Typing and Crossmatching system that has three common alleles. The A and the B alleles produce a protein that can be detected on the cell surface, whereas the O allele does not. Therefore, people who have an AA or AO genotype have type A blood, people with a BB or BO genotype have type B blood and people with an A and a B allele have type AB blood. Each of the children from two parents with blood types AB and O, respectively, will have the A or B blood type, because each child will inherit the O type from one parent and either the A or the B from the other parent. About half of the children will fall in each category, if we look at a large enough number of children from matings of this type. Genes comprise only a minority of the DNA in a cell and are not very polymorphic polymorphic - polymorphism . That is, most people have the same DNA sequence DNA sequence Genetics The precise order of bases–A,T,G,C–in a segment of DNA, gene, chromosome, or an entire genome. See Base pair, Base sequence analysis, Chromosome, Gene, Genome. for the portions of the gene that code for the amino acids amino acid (əmē`nō), any one of a class of simple organic compounds containing carbon, hydrogen, oxygen, nitrogen, and in certain cases sulfur. These compounds are the building blocks of proteins. . However, the noncoding spacer DNA Spacer DNA are regions of non-transcribed DNA between tandemly repeated genes, such as ribosomal RNA genes in eukaryotes. can have many different compositions in the population. These differences usually have no effect on a person but they make it possible to track the transmission of short pieces of DNA, called markers, from a person to his/her offspring. The alleles of the most widely used type of marker -- short tandem repeat A short tandem repeat (STR) in DNA is a class of polymorphisms that occurs when a pattern of two or more nucleotides are repeated and the repeated sequences are directly adjacent to each other. polymorphisms (STRP) -- vary by number of repeats of a sequence of nucleotides (i.e., length). During the process of meiosis, which results in formation of the ova ova (o´vah) plural of ovum. Ova Eggs. Mentioned in: Stool O & P Test ova plural of ovum. and sperm, the two chromosomes in each pair (homologues), one maternally derived and the other paternally pa·ter·nal adj. 1. Relating to or characteristic of a father or fatherhood; fatherly. 2. Received or inherited from a father: a paternal trait. 3. derived, physically mix their genetic material (recombine re·com·bine v. To undergo or cause genetic recombination; form new combinations. ) in one or more places along their length. The closer two segments of DNA are to each other, the more likely they are to remain together during this process. For the linkage analysis linkage analysis Genetics A gene-hunting technique that traces patterns of heredity in large, high-risk families, in an attempt to locate a disease-causing gene mutation by identifying traits co-inherited with it; the formal study of the association between the , in a method analogous to typing blood, many polymorphic markers scattered throughout the genome are genotyped and then examined in each family to determine whether a marker and the specific phenotype are co-inherited more often than would be predicted by chance under the proposed model of transmission of the phenotype. This occurrence suggests that the DNA marker is near ("linked to") a gene that is involved in the phenotype. The marker is not the cause of the phenotype, and different alleles may be associated with the phenotype in different families. Unless a single family is extremely large, it is necessary to study many families to detect a significantly skewed skewed curve of a usually unimodal distribution with one tail drawn out more than the other and the median will lie above or below the mean. skewed Epidemiology adjective Referring to an asymmetrical distribution of a population or of data pattern of co-inheritance. Because the genomic locations of the markers are known, finding linkage to a marker reveals the chromosomal region chromosomal region n. The part of a chromosome defined either by anatomical details, especially by banding, or by its linkage groups. containing the gene. The remarkable progress of the Human Genome The human genome is the genome of Homo sapiens, which is composed of 24 distinct pairs of chromosomes (22 autosomal + X + Y) with a total of approximately 3 billion DNA base pairs containing an estimated 20,000–25,000 genes. Project is facilitating the identification of specific genes within a chromosomal region because the location and some sequence information is known for most of the approximately 30,000 to 50,000 human genes. Model-Based Versus Model-Free Analyses For some phenotypes, the mode of transmission in families is obvious and straightforward. For example, cystic fibrosis cystic fibrosis (sĭs`tĭk fībrō`sĭs), inherited disorder of the exocrine glands (see gland), affecting children and young people; median survival is 25 years in females and 30 years in males. is autosomal recessive (both alleles must be mutated for a person to be affected; both parents are carriers of one mutated and one normal allele; and each child of two carrier parents has a 25% chance of inheriting the disease); Huntington's chorea Hun·ting·ton's chorea n. See hereditary chorea. Huntington's chorea A hereditary disease that typically appears in midlife, marked by gradual loss of brain function and voluntary movement. is autosomal dominant (a single mutated allele is sufficient to cause the disease and each child of an affected person has a 50% chance to inherit the disease); and hemophilia A hemophilia A n. Hemophilia due to deficiency of factor VIII, characterized by prolonged clotting time, decreased formation of thromboplastin, and diminished conversion of prothrombin. is X-linked recessive X-linked recessive Genetics adjective Referring to a mode of inheritance, in which a gene on the X chromosome requires one copy for phenotypic expression in ♂, but 2 copies for expression in ♀; with the gene only on the X chromosome, ♀ are (males, who have only one X chromosome X chromosome One of the two sex chromosomes (the other is Y) that determine a person's gender. Normal males have both an X and a Y chromosome, and normal females have two X chromosomes. , are affected if they have the mutation; a female who has one mutated allele and one normal allele is not affected, but her sons each have a 50% chance of being affected). For dyslexia, however, the pattern of inheritance is much harder to discern because of the likely complexity of the genetic portion (that is, there are probably multiple genes that interact to produce the observable phenotype) and the contribution of environmental factors. Furthermore, unlike Mendelian disorders, which are usually caused by highly penetrant pen·e·trant adj. Penetrating; piercing: a penetrant wind from the north. n. Something that penetrates or is capable of penetrating. but rare alleles in a single gene, complex disorders are likely to be associated with common, less penetrant functional polymorphisms in multiple genes. As mentioned, each of these susceptibility alleles may increase the risk of disease, but does not necessarily cause disease. Analyses can be performed that do not place many constraints on the model of transmission in families. These methods are often referred to as "model-free" and include sib-pair analyses (e.g., Thomson, 1986). Sib-pair methods calculate how often sibs who are concordant for a phenotype have inherited the same marker allele from a parent. As each parent has only two alleles at any marker, if the gene and the marker are not linked, the two affected sibs will inherit the same allele by chance approximately 50% of the time. If the gene and the marker are linked, sibs who are concordant for the phenotype will tend also to be concordant for the allele at the marker. The alleles are tallied in multiple sib pairs and the deviation from the random expectation is a measure of linkage between the marker and the gene involved in the phenotype being studied. Model-based methods, in which details of the inheritance and expression patterns of a disorder are incorporated into the analyses, are inherently more powerful than sib-pair methods, but the power is dependent on the correctness of the model used. In family-based linkage analysis, the cotransmission of marker alleles and the phenotype can be tracked through multiple generations and can utilize all family members, apparently unaffected as well as affected (reviewed in Borecki & Suarez, 2001). In this method, the empiric data from each family are compared to theoretical results expected if the two loci loci [L.] plural of locus. loci Plural of locus, see there are linked. The predicted proportion of recombinant gametes is the recombination recombination, process of "shuffling" of genes by which new combinations can be generated. In recombination through sexual reproduction, the offspring's complete set of genes differs from that of either parent, being rather a combination of genes from both parents. fraction ([Theta]), with fewer recombination events expected for more tightly linked loci. The genetic distance between two loci (measured in Morgans) is correlated in a more variable way with physical distance (measured in DNA base pairs). The linkage analyses are repeated for various values of [Theta] and results are reported as the logarithm logarithm (lŏg`ərĭthəm) [Gr.,=relation number], number associated with a positive number, being the power to which a third number, called the base, must be raised in order to obtain the given positive number. of the odds of likelihood of linkage, or lod score Lod score (lod), n the “Logarithm of the odds” score, which measures the likelihood of two genes being within measurable distance of each other. , for each family and summed for the total families. Given the number of genes, the a priori a priori In epistemology, knowledge that is independent of all particular experiences, as opposed to a posteriori (or empirical) knowledge, which derives from experience. likelihood of linkage of any given marker to the gene involved in the phenotype is low. Therefore, regardless of the method of analysis, the convention has been to require a high lod score, at least 3 (or 1,000 to 1 odds in favor of linkage), as significant evidence in favor of linkage for a single gene defect (Morton, 1955) and higher thresholds for complex disorders (Lander & Kruglyak, 1995). If there is a known gene whose properties suggest it is a good candidate to be involved in the phenotype, or if there is linkage of the phenotype to a short genomic region, one can look for an association between the phenotype and a specific allele or haplotype haplotype /hap·lo·type/ (-tip) the group of alleles of linked genes, e.g., the HLA complex, contributed by either parent; the haploid genetic constitution contributed by either parent. hap·lo·type n. . A mutation arises in the context of a haplotype formed by the specific alleles at flanking loci on the chromosome. Over time, with succeeding generations, the process of recombination separates the mutated allele from the flanking alleles and eventually equilibrium, based on allele frequency allele frequency The percentage of a population of a species that carries a particular allele on a given chromosome locus. , is reached between the alleles at all these loci. The number of generations needed to arrive at equilibrium is a function of the physical distance between the loci, but is not uniform across the genome. An association between specific alleles at two loci is called "linkage disequilibrium," and it is generally restricted to very short segments of DNA. In essence, in linkage disequilibrium mapping, the transmitted and nontransmitted parental alleles are scored in their offspring. The finding of biased co-inheritance of an allele and a phenotype supports the hypothesis that the candidate gene contributes to the phenotype or, if the gene is unknown, the extent of the co-inherited region can be used to further localize lo·cal·ize v. lo·cal·ized, lo·cal·iz·ing, lo·cal·iz·es v.tr. 1. To make local: decentralize and localize political authority. 2. the gene. On one hand, the a priori likelihood of success for association studies is low for several reasons: (a) the large number of genes in the genome, (b) the lack of complete information about the functions of most genes necessary to ensure that the causative caus·a·tive adj. 1. Functioning as an agent or cause. 2. Expressing causation. Used of a verb or verbal affix. caus gene is among those selected for study, and (c) the variability across the genome in the distances over which linkage disequilibrium persists for sufficient generations to allow detection. On the other hand, one great advantage of association studies is their ability to study family groups as small as trios of single affected offspring and their parents. Linkage Analyses for Reading- and Spelling-Related Phenotypes As would be predicted for a disorder that is complex and phenotypically diverse, linkage analyses suggest that reading and spelling disabilities are also genetically heterogeneous. Possible localizations for genes for reading and spelling disabilities have been reported on chromosomes 1, 2, 6, and 15 (see Table 1). The studies are not directly comparable as there are substantial differences in the phenotypes evaluated, the ascertainment schemes, the diagnostic criteria for affected status, and the analysis methods.
Table 1
Comparison of Current Linkage Analyses in Reading and Spelling
Disabilities
Reference Samples Phenotype
Chromosome 1p22 or 2q22
Froster et al., 1993 1 two- severely
generation delayed speech,
family school history,
age-discrepancy
writing disability
Chromosome 1p34-36
Rabin et al., 1993 9 three- composite --
generation details of
families assessment not given
Grigorenko et al., 8 multi- single-word
2001 generational reading
families
rapid naming
phonological decoding
phonological awareness
Chromosome 2p15-16 (DYX3)
Fagerheim 1 family: 36 composite, weighted
et al., 1999 members in 3 for history and
generations tests of phonological
decoding and
phonological
awareness, word
identification
or spelling
Chromosome 6p21.3 (DYX2)
Cardon et al., 114 sib pairs composite,
1994, 1995 from 19 including word
families recognition,
46 DZ comprehension,
twin pairs spelling recognition
same composite
Grigorenko et al., 6 multi- phonological
1997 generational awareness
families
Grigorenko 8 single real-
et al., 2000 multigenerational word reading,
families vocabulary
and spelling
Gayan et al., 101-126 DZ twins orthographic
1999 and their sibs choice of real
same population word from
same population nonword homonyms
phonological decoding
phonological awareness
Chromosome 6p21.3 (DYX2)
Fisher et al., 1999 77-119 phonological decoding
sib pairs
orthographic coding of
irregular words
Chromosome 6q13-16.2
Petryshen et al., 1999 96 families phonological decoding
228 sib pairs phonological decoding
357 sib pairs spelling from
dictation
Chromosome 15q (DYX1)
Smith et al., 1983 8 families with oral prose reading
extended
history of
reading
disability
Grigorenko 6 families with single real-word
et al., 1997 extended reading
history of
reading
disability
Schulte-Korne 7 families spelling from
et al., 1998 dictation
Morris et al., 2000 178 parent/ oral prose reading
offspring trios
Fagerheim et al., 2000 1 family: same phenotypes as for
36 members DYX3
in 3
generations
Categorical (C) vs.
Reference Quantitative (Q) Method(a)/Score(b)
Chromosome 1p22 or 2q22
Froster et al., 1993 C LOD/1.5
Chromosome 1p34-36
Rabin et al., 1993 C LOD/1.95
Grigorenko et al., C APM
2001
C APM
NPL p < 0.05
C APM
NPL p < 0.05
C NPL p < 0.05
Chromosome 2p15-16 (DYX3)
Fagerheim LOD/3.525
et al., 1999 MP-NPL/0.O16-0.001
Chromosome 6p21.3 (DYX2)
Cardon et al., Q [MPNP.sub.p])/0.0027
1994, 1995 to 0.0417
Q NPL/0.0094
Grigorenko et al., C APM/<0.005
1997
[APM.sub.M]/
<[10.sup.6]
Grigorenko C APM/[approximately
et al., 2000 equal] 0.01
Gayan et al., Q [MPNP.sub.1]/3.10
1999
Q [MPNP.sub.1]/2.42
Q [MPNP.sub.1]/1.46
Chromosome 6p21.3 (DYX2)
Fisher et al., 1999 Q NPL/<0.0005;
MP-NPL/<.05
Q NPL/<0.0005;
MP-NPL/<.005
Chromosome 6q13-16.2
Petryshen et al., 1999 C LOD/2.6
C NPL/.016
Q NPL/.00076
Chromosome 15q (DYX1)
Smith et al., 1983 C LOD/3.241
Grigorenko C LOD/3.15
et al., 1997
Schulte-Korne C LOD/1.26-1.38
et al., 1998
Morris et al., 2000 C eTDT/p = 0.006
Fagerheim et al., 2000 C LOD/2.25
Map location (KcM(c))
Reference Flanking markers
Chromosome 1p22 or 2q22
Froster et al., 1993 --
t(1;2)(p22;q22)
Chromosome 1p34-36
Rabin et al., 1993 27.6-41.2
FUCA,
D1S165/D1S160
Grigorenko et al., 45.33-48.53
2001 D15199 - D15478 and
[approximately equal] 60 -
[approximately equal] 71
MATN1 - PPT
14.59-33.75
D15253 - D1S507
14.59-[approximately equal] 71
D15253 - PPT
45.33-48.53
D15199 - D15478
D15199 (45.33)
14.59-[approximately equal] 71
D15253 - PPT
Chromosome 2p15-16 (DYX3)
Fagerheim
et al., 1999 76.34-80
D252352 - D251337
Chromosome 6p21.3 (DYX2)
Cardon et al., 44.4-45.2
1994, 1995 D65105 - TNFB
same
Grigorenko et al., 34.23-44.4
1997 D65109 - D65276
D65109 - D65306
Grigorenko 40.9-41.1
et al., 2000 D65464 - D65306
Gayan et al., 44.40
1999 D65276 - D65105
same
same
Chromosome 6p21.3 (DYX2)
Fisher et al., 1999 40.13-44.4
D651660 - D65276
44.4
D65276 - D65105
D6S1660 - D65291
44.4
D65276 - D65105
Chromosome 6q13-16.2
Petryshen et al., 1999 82.59-90.43
D65254 - D65251
D65254d
D65254d
Chromosome 15q (DYX1)
Smith et al., 1983 peri-
centromeric
Grigorenko 40.16-47.8
et al., 1997 D155214 - D155209
Schulte-Korne 40.16-45.56
et al., 1998 D155214 - D155126
Morris et al., 2000 39.72-40.25
D155146 - D15S994
Fagerheim et al., 2000 6.92
D155986(d)
(a) LOD = parametric family-based loci score method; a lod score
of slightly greater than 3 is accepted as evidence in favor of linkage
at p [is less than or equal to] .05.
[MPNP.sub.p] = multipoint nonparametric regression method for
interval mapping of an extreme quantitative trait phenotype, p value.
[MPNP.sub.i] = multipoint nonparametric regression method, lod score.
NPL = nonparametric scoring method for a categorical phenotype.
MP-NPL = multipoint nonparametric lod score for a categorical
phenotype.
APM = affected pedigree member; a nonparametric method that includes
all affected relatives, not only sibs.
[APM.sub.M] = multipoint analysis.
eTDT = transmission disequilibrium test.
(b) p value or maximum lod score. The empirical p values for
the eTDT are based on the number of times the observed heplotype
frequency exceeded simulated expected frequencies, expressed as
an empirical p value for a [chi square].
(c) Marshfield sex-averaged map location as measured in Kosambi
centimorgans from the top of the short arm of the chromosome
(Marshfield website). A Kosambi centimorgan is a unit of
recombination frequency, adjusted for region-specific
interference. The likelihood of a recombination event
in a region is not equally distributed along the
chromosomes. Interference is the phenomenon whereby
recombination is suppressed below what would be predicted
for the physical length of the segment.
(d) Reported in abstract and meeting poster; details about
flanking markers not provided.
The first report of linkage of dyslexia to a chromosomal region, now assigned the locus name DYX DYX Dyslexia 1, was published in 1983 (Smith, Kimberling, Pennington, & Lubs, 1983). The STRP markers had not yet been described and linkage studies were limited to the few polymorphic gene and cytogenetic cytogenetic /cy·to·ge·net·ic/ (-je-net´ik) 1. pertaining to chromosomes. 2. pertaining to cytogenetics. cytogenetic pertaining to or originating from the origin and development of the cell. markers available. The investigators noticed cosegregation of dyslexia, defined by oral reading ability at least two years below expected grade level, and a cytogenetic polymorphism polymorphism, of minerals, property of crystallizing in two or more distinct forms. Calcium carbonate is dimorphous (two forms), crystallizing as calcite or aragonite. Titanium dioxide is trimorphous; its three forms are brookite, anatase (or octahedrite), and rutile. at the top of the acrocentric chromosome acrocentric chromosome n. A chromosome with the centromere located very close to one end so that the shorter arm is very small. 15 in eight families selected on the basis of apparent autosomal dominant transmission of the disorder. A dichotomous di·chot·o·mous adj. 1. Divided or dividing into two parts or classifications. 2. Characterized by dichotomy. di·chot scheme was employed (disabled or not disabled) and history was preferentially used for categorization of adults. One family contributed the majority of the significance. When additional families and family members were added and DNA markers replaced the cytogenetic markers for the linkage analysis, the lod score was reduced below the level accepted as evidence for linkage (Smith et al., 1986; Smith, Pennington, Kimberling, & Ing, 1990). However, there was evidence that reading disability might be genetically heterogeneous. That is, only a subset of the families might have the disorder on the basis of a gene on chromosome 15. Although linkage associations between dyslexia and a locus on chromosome 15 have not been confirmed in all studies (Bisgaard, Eiberg, Moller, Niebuhr, & Mohr, 1987; Cardon et al., 1994; Fagerheim et al., 1999; Lubs et al., 1991; Rabin et al., 1993; Sawyer et al., 1998), suggestive evidence favoring the existence of a chromosome 15 locus involved in reading and spelling disability has been published by at least three other groups using categorical definitions for the phenotypes. Linkage to markers on the proximal long arm ([Theta]) of chromosome 15 was found for deficits in single real word reading (Grigorenko et al., 1997) and spelling (Schulte-Korne et al., 1998) and association of a 3-marker haplotype was found for deficits in oral prose reading (Morris et al., 2000). Dyslexia was observed to cosegregate with a balanced translocation balanced translocation n. Translocation of the long arm of an acrocentric chromosome to another chromosome, accompanied by loss of the small fragment containing the centromere. involving chromosome band chromosome band n. An area across the width of a chromosome that stains darkly or in a contrasting manner. 15q21 in three individuals in one family (Nopola-Hemmi et al., 2000). However, a fourth translocation translocation /trans·lo·ca·tion/ (trans?lo-ka´shun) the attachment of a fragment of one chromosome to a nonhomologous chromosome. Abbreviated t. carrier in that family was not affected by dyslexia and in a second family, only one of four carriers of a translocation involving the same region of chromosome 15q was affected by dyslexia. It has also been suggested that a gene at the DYX1 locus might modify the expression of the dyslexia phenotype in a family whose dyslexia appears to be linked to the short arm (p) of chromosome 2 (Fagerheim et al., 2000). Suggestive evidence in favor of linkage to chromosome 1p34-36 was obtained in a study of nine three-generation families (Rabin et al., 1993), including the one that had previously provided much of the evidence for linkage to chromosome 15 (Smith et al., 1983). Supportive evidence has recently been reported for a contribution of a locus on the short arm of chromosome 1 to the phenotypes of single-word reading, phonological decoding and rapid automatized naming in eight extended dyslexic families previously studied for linkage to chromosomes 6 and 15 (Grigorenko et al., 2001). The region of interest was very broad, spanning approximately 57 Kosambi centimorgans. No evidence for linkage to this region of chromosome 1 was found in another study (Cardon et al., 1994). Cosegregation of a balanced chromosomal translocation In genetics, a chromosome translocation is a chromosome abnormality caused by rearrangement of parts between nonhomologous chromosomes. It is detected on cytogenetics or a karyotype of affected cells. , t(1;2)(p22;q22) and a syndrome of speech delay and dyslexia was reported in one family (Froster, Schulte-Korne, Hebebrand & Remsschmidt, 1993), but the significance of this study is limited by the small size of the family. Bands 1p22 and 1p34-36 are genetically and physically distant from each other. Evidence for a locus on chromosome 6p was originally suggested by Smith, Kimberling, and Pennington (1991) in a study of the multigenerational mul·ti·gen·er·a·tion·al adj. Of or relating to several generations: multigenerational family traditions. families in whom linkage of dyslexia to chromosome 15 was now in doubt. The region of chromosome 6p containing the HLA HLA human leukocyte antigens. HLA abbr. human leukocyte antigen HLA (human leuckocyte antigen) locus had been targeted for genetic studies because of previous research suggesting an increased incidence of autoimmunity in dyslexic individuals and their relatives (Geschwind & Behan, 1982; Pennington, Smith, Kimberling, Green, & Haith, 1987). However, this association has not been confirmed in other studies (Gilger et al., 1998). Cardon et al. (1994, 1995) later reported linkage to chromosome 6p for a compound continuous phenotype defined by a discriminant score in a study population of DZ twins. The discriminant score was derived from performance on measures of reading recognition, reading comprehension Reading comprehension can be defined as the level of understanding of a passage or text. For normal reading rates (around 200-220 words per minute) an acceptable level of comprehension is above 75%. , and spelling. Additional evidence for the existence of a locus on chromosome 6p that may contribute to reading difficulties has been reported by several groups. The phenotypes that showed linkage to chromosome 6p were: (a) a categorical phenotype assessed by different composite measures of phonological awareness based on the ability to segment words into phonemes and to recognize and sequence phonemes appropriately (Grigorenko et al., 1997); (b) a categorical phenotype based on single real-word reading, spelling or vocabulary (Grigorenko et al., 2001); (c) a continuous component measure of orthographic processing based on the ability to identify a real word from nonword homonyms and to choose the correct word from a pair of real word homonyms when given the word's meaning (Gayan et al., 1999); (d) a continuous component measure of orthographic processing based on the ability to read irregular real words (Fisher et al., 1999); (e) a continuous component measure of phonological awareness based on the ability to delete or transpose trans·pose v. To transfer one tissue, organ, or part to the place of another. the order of phonemes (Gayan et al., 1999); and (f) a continuous measure of phonological decoding of nonwords (Fisher et al., 1999; Gayan et al., 1999). On the other hand, failure to find evidence for linkage to chromosome 6p has been reported for a categorical phenotype of spelling deficiency in a set of eight German families (Schulte-Korne et al., 1998), for a categorical measure of phonological decoding (Field & Kaplan, 1998) in a set of 96 Canadian families, and in the same Canadian sample for continuous measures of phonological awareness, phonological decoding, spelling, and RAN (Petryshen, Kaplan, Liu, & Field, 2000). The latter group, has recently reported suggestive evidence of a locus on chromosome 6q for categorical and quantitative phenotypes based on phonological decoding and for a quantitative measure of spelling from dictation (Petryshen, Kaplan, & Field, 1999). Significant evidence for linkage of dyslexia to chromosome 2q was found in a large Norwegian family (Fagerheim et al., 1999) in the first reported genome-wide scan for a dyslexia locus. This locus has been assigned the name DYX3. A qualitative affectation af·fec·ta·tion n. 1. A show, pretense, or display. 2. a. Behavior that is assumed rather than natural; artificiality. b. A particular habit, as of speech or dress, adopted to give a false impression. status was determined by weighting the history and test results for isolated real-word and nonword recognition, with and without time constraints In law, time constraints are placed on certain actions and filings in the interest of speedy justice, and additionally to prevent the evasion of the ends of justice by waiting until a matter is moot. , spelling, and phoneme manipulation. Although mildly positive linkage results were obtained to the pericentromeric region of chromosome 15, where the DYX1 locus was originally specified, linkage to DYX2 was excluded in this family (Fagerheim et al., 1999, 2000). It may be of interest that linkage of dyslexia, as categorically determined from tests of orthographic and phonological decoding and spelling, to DYX2 was also not found in another large Norwegian family (Heiervang et al., 1995). Failure to confirm a given localization Customizing software and documentation for a particular country. It includes the translation of menus and messages into the native spoken language as well as changes in the user interface to accommodate different alphabets and culture. See internationalization and l10n. is difficult to evaluate because it may be due to inadequate sample size, differences in diagnostic criteria, differences in ascertainment methods, differences in statistical methods and genetic differences between different populations. SUBPHENOTYPING IN READING AND SPELLING DISABILITIES Rationale for Identifying Subphenotypes None of the studies cited above is independently strong enough to provide conclusive evidence CONCLUSIVE EVIDENCE. That which cannot be contradicted by any other evidence,; for example, a record, unless impeached for fraud, is conclusive evidence between the parties. 3 Bouv. Inst. n. 3061-62. for linkage of a particular phenotype to a specific locus, given the complexity of the trait. However, consistent findings by several groups make it likely that loci at chromosomes 6 and 15 are involved. The information available currently does not allow a precise estimate of the relative contributions of each locus to each of the processes comprising the "dyslexia" phenotype, nor is it known how many genes contribute to each of the processes. Perhaps there is a threshold of dysfunction for dyslexia and, in an additive model, each of several loci can contribute relative protection or burden towards this threshold. Some loci may play a unique role and some may contribute to more than one phenotype. Others may have a more restricted range of effect. More than one gene may independently lead to a similar phenotype and other genes may modify the expression of the phenotype. None of the psychometric psy·cho·met·rics n. (used with a sing. verb) The branch of psychology that deals with the design, administration, and interpretation of quantitative tests for the measurement of psychological variables such as intelligence, aptitude, and measures used in the evaluation of dyslexia are pure measures of discrete and unique cognitive processes Cognitive processes Thought processes (i.e., reasoning, perception, judgment, memory). Mentioned in: Psychosocial Disorders . The phenotypes identified by these psychometric measures are related to each other and performance on any two measures is often significantly correlated (Berninger et al., 2001; Gayan et al., 1999; Grigorenko et al., 1997; Olson, Forsberg, & Wise, 1994). Information is lost and power is reduced when a complex disorder is treated as a unified entity (Wijsman & Amos, 1997). Therefore, we have chosen a systematic approach: (a) to identify the phenotypes most likely to be determined by genetic factors; (b) to evaluate the genetic relationship between these measures; and (c) to develop models of transmission that will enable use of more powerful model-based linkage analyses rather than model-free methods. These studies are being performed using the quantitative measurement data rather than dichotomous diagnostic categories. Rationale for Including Measurements of Verbal IQ in Dyslexia Research There is an ongoing controversy regarding the use of IQ in the diagnosis of dyslexia (Shaywitz et al., 1992b; Siegel, 1999; Stanovich, 1994). However, there are compelling reasons to account for Verbal IQ in genetic research on dyslexia. First, the low performance group is likely to be more heterogeneous than the remainder of the distribution because it will contain individuals who have neurological neurological, neurologic pertaining to or emanating from the nervous system or from neurology. neurological assessment evaluation of the health status of a patient with a nervous system disorder or dysfunction. , psychiatric, and other medical disorders that interfere with learning or testing (e.g., fetal alcohol syndrome fetal alcohol syndrome (FAS), pattern of physical, developmental, and psychological abnormalities seen in babies born to mothers who consumed alcohol during pregnancy. , brain trauma), as well as those for whom environmental exposures are the main causes for the learning disability. Some support for this conjecture CONJECTURE. Conjectures are ideas or notions founded on probabilities without any demonstration of their truth. Mascardus has defined conjecture: "rationable vestigium latentis veritatis, unde nascitur opinio sapientis;" or a slight degree of credence arising from evidence too weak or too is provided by Pennington, Gilger, Olson, and DeFries (1992). Second, there is some evidence that reading disability defined by the discrepancy criterion may be more heritable than reading disability defined by the low performance criterion (Olson, Datta, Gayan, & DeFries, 1999) and that reading disability in high-IQ groups is significantly more heritable than is reading disability in low-IQ groups, with estimates of .72 and .43, respectively (Wadsworth, Olson, Pennington, & DeFries, 2000). Third, the Verbal IQ exerted a significant positive influence on the correlation between siblings and between parents and offspring for all measurements of reading and spelling performance (Raskind et al., 2001). There is evidence for a genetic contribution to intelligence (e.g., Alarcon, Plomin, Fulker, Corley, & DeFries, 1998; Bouchard, 1998; Light, DeFries, & Olson, 1998; Petrill et al., 1997; Rietveld, van Baal, Dolan, & Boomsma, 2000), and assortative mating as·sor·ta·tive mating n. Nonrandom mating in which individuals mate preferentially according to phenotype. assortative mating sexual reproduction in which the pairing of male and female is not random. for cognitive abilities as well as for achievement has been repeatedly observed (e.g., Alarcon, DeFries, & Gillis, 1994; Gilger et al., 1991; Wolff & Melngailis, 1994). Failure to adjust for IQ effects might result in an incorrect model of transmission of reading and spelling related phenotypes. It is important to note that although inclusion of IQ measurements in research on the etiologies of reading disability is justifiable, it may not be appropriate to use IQ as an exclusionary criterion in schools, as all children with a variety of reading disorders reading disorder See Dyslexia, Reading disability. may benefit from educational intervention, regardless of cause. UNIVERSITY OF WASHINGTON LEARNING DISABILITIES CENTER: AGGREGATION AND SEGREGATION ANALYSES OF SUBPHENOTYPES It has been suggested that the genetics of complex disorders might be more tractable tractable easy to manage; tolerable. if the phenotypes studied could be reduced to simpler or more phenotypically precise subphenotypes. In the University of Washington Learning Disabilities Center, aggregation and segregation analyses are being carried out to identify dyslexia subphenotypes whose properties make them good candidates for further genetic study. Families were identified in which there was a child with dyslexia and/or dysgraphia dysgraphia /dys·graph·ia/ (-graf´e-ah) difficulty in writing; cf. agraphia. dys·graph·i·a n. Impairment of the ability to write, usually caused by brain dysfunction or disease. in grades 1 to 6. These families were ascertained without regard for family size, existence of siblings, or additional history of reading or writing problems. One hundred and two of these children (probands) qualified for the study. Details of the procedures used for selecting probands and for evaluation of probands and their nuclear family members have been published (Berninger et al., 2001; Raskind et al., 2001). A combination of low achievement and Verbal IQ-Achievement discrepancy criteria were employed, rather than low achievement only or Verbal IQ-Achievement discrepancy only, to determine whether a prospective proband proband /pro·band/ (pro´band) an affected person ascertained independently of relatives in a genetic study. pro·band n. qualified for the study and for the analyses based on categorical diagnoses reported in this article. Inclusion as a proband required a prorated Verbal IQ (proVIQ) of at least 90 ([is greater than or equal to] 25th %tile), a discrepancy of at least one standard deviation In statistics, the average amount a number varies from the average number in a series of numbers. (statistics) standard deviation - (SD) A measure of the range of values in a set of numbers. between the proVIQ and the score on one or more reading or writing measure in a screening battery, and performance on the measure below the population mean. The proVIQ is the same as the Verbal Comprehension Factor, calculated by prorating prorating (prōrā´ting), n a clause in a contract with participating dental professionals wherein they agree to accept a percentage reduction in their billings to offset the amount by which the total cost of all verbal scale subtests of the Wechsler Intelligence Scale for Children Wechsler intelligence scale for children n. A standardized intelligence test that is used for assessing children from 5 to 15 years old. -- Third Edition (WISC-III WISC-III Wechsler Intelligence Scales for Children, 3rd Edition , Wechsler, 1992a) with the exception of the Digit Span and Arithmetic subtests. A total of 23 measures were administered to 409 members of 102 nuclear families who were at least 6 years old. The familial aggregation pattern of the quantitative data from each measure in the battery was analyzed (Raskind et al., 2001). If there is a genetic basis for a phenotype and the sample set is of sufficient size, blood-related family members should show positive correlations Noun 1. positive correlation - a correlation in which large values of one variable are associated with large values of the other and small with small; the correlation coefficient is between 0 and +1 direct correlation , with magnitudes proportional to the degree of genetic relatedness. The phenotypes of non-consanguineous (genetically unrelated) parents should not be correlated. Significant correlations among relatives in a pattern consistent with a genetic basis were observed for five measures: the Phonological Decoding Efficiency (PDE PDE Pennsylvania Department of Education PDE Plug-In Development Environment PDE Partial Differential Equation PDE Phosphodiesterases PDE Personal Digital Entertainment PDE Pulse Detonation Engine PDE Product Data Exchange PDE Present-Day English ) subtest of the prepublication pre·pub·li·ca·tion adj. Of or relating to the time just before a publication date, especially of a book: The marketing department was amazed by the number of prepublication orders. version of the TOWRE (Torgesen, Wagner, & Rashotte, 1999), the Nonword Memory (NWM NWM Natural World Museum (San Francisco, CA) NWM Network Management NWM New World Monkeys NWM Normal White Matter NWM Nationwide Wholesale Mortgage NWM No Worries Mate NWM No Way Man NWM Nearly Wet Myself ) subtest of the Comprehensive Test of Phonological Processing (CTOPP CTOPP Comprehensive Test of Phonological Processing ) (Wagner & Torgesen, 1999), the Digit Span subtest of the WISC-III for individuals younger than 17 or the Wechsler Adult Intelligence Scale Wechsler Adult Intelligence Scale (WAIS): see psychological tests. -- Revised (WAIS-R WAIS-R Wechsler Adult Intelligence Scale-Revised, see there ; Wechsler, 1981) for those 17 and older, the Word Attack (WA) subtest of the Woodcock woodcock: see snipe. woodcock Any of five species (family Scolopacidae) of plump, sharp-billed migratory birds of damp, dense woodlands in North America, Europe, and Asia. Reading Mastery Test-Revised (WRMT-R; Woodcock, 1987), and the spelling subtest of the Wide Range Achievement Test -- Third Edition (WRAT-3; Wilkinson, 1993). Weaker evidence of such an aggregation pattern was obtained for five additional measures: the spelling subtest of the Wechsler Individual Achievement Test (WIAT WIAT Wechsler Individual Achievement Test WIAT War Is Also Terrorism ; Wechsler, 1992b), the accuracy, rate and comprehension subtests of the Gray Oral Reading Test -- Third Edition (GORT-3; Wiederholt & Bryant 1992), and Rapid Automatized Naming for Switching Letters and Numerals (RAS (1) See network access server. (2) (Remote Access Service) A Windows NT/2000 Server feature that allows remote users access to the network from their Windows laptops or desktops via modem. See RRAS and network access server. ; Wolf, 1986). To obtain information about the interdependence of the measures on shared genetic factors, pairs of related measures were examined, using each measure in the pair once as the response variable and once as the covariate. In addition to the reading- and writing-related measures NWM, Digit Span, WA, PDE, WRAT-3 spelling, RAS and GORT-3 rate, a quantitative measure of inattention in·at·ten·tion n. Lack of attention, notice, or regard. Noun 1. inattention - lack of attention basic cognitive process - cognitive processes involved in obtaining and storing knowledge (difficulty in self-regulation of mental processes) was also evaluated. The effect of the respective covariate on the aggregation pattern of the response variable suggested that there may be a genetic contribution to phonological NWM in addition to the genetic contribution it shares with Digit Span, a genetic contribution to efficiency (rate) of phonological decoding in addition to the genetic contribution it shares with accuracy of phonological decoding, a genetic contribution to phonological nonword memory in addition to the genetic contribution it shares with written spelling, a genetic contribution to written spelling in addition to the genetic contribution they share with accuracy of phonological decoding, and a genetic contribution to inattention ratings in addition to the genetic contribution it shares with either RAS or oral reading rate (Hsu, Berninger, Thomson, Wijsman, & Raskind, 2001). In the first segregation study two converging measures of phonological short-term memory were considered -- Digit Span and phonological NWM (Wagner & Torgesen, 1999; Wechsler, 1981, 1992a). When analyzed individually, evidence for a major gene inheritance was obtained for each phenotype, with ~2.4 and ~1.9 QTLs contributing to NWM and Digit Span, respectively (Wijsman et al., 2000). When analyses were performed with one measure incorporated as a covariate for the other, the most parsimonious par·si·mo·ni·ous adj. Excessively sparing or frugal. par si·mo model suggested that genes that influence Digit
Span also influence NWM, but that additional QTLs are involved in NWM.
Identification of genes for these more basic phenotypes will be an
important step towards understanding the biology of the more complex
behavior of reading.
ISSUES OF PENETRANCE AND EXPRESSIVITY expressivity /ex·pres·siv·i·ty/ (eks?pres-siv´i-te) in genetics, the extent to which an inherited trait is manifested by an individual. Effect of Gender on Expression of Dyslexia Almost all studies of reading and spelling disabilities have found a higher prevalence in males, ranging from 1.3-4:1 (e.g., Allred, 1990; Decker & DeFries, 1981; DeFries, 1989; James, 1992; Pennington et al., 1991; Schulte-Korne et al., 1996; Wadsworth, DeFries, Stevenson, Gilger, & Pennington, 1992; Wadsworth et al., 2000). It has been argued that this observation may result from biased ascertainment rather than from an actual gender influence on the phenotype (Shaywitz, Shaywitz, Fletcher, & Escobar, 1990; Vogel, 1990). Referred samples might reflect societal prejudices and/or gender differences in behavioral coping mechanisms coping mechanism Psychiatry Any conscious or unconscious mechanism of adjusting to environmental stress without altering personal goals or purposes . However, it is also possible that there is a true difference in the prevalence, severity or etiology of dyslexia between males and females. In a population-based study of oral reading performance in twins, with no correction for IQ, there was greater variability in scores for males than females (Reynolds et al., 1996). As a larger percent of males fell in the tails of the distribution, more males than females would meet the criteria for disability in oral reading using an achievement criterion. A study of 75 first-degree relatives of 20 children with specific reading disability found that a significantly greater number of affected male relatives displayed difficulty on tests of spelling, oral reading and reading nonsense words contained in text than did the female relatives (Finucci et al., 1976). The gender ratio among spelling disabled relatives of 32 spelling disabled children was 2.4:1 (Schulte-Korne et al., 1996). Brothers of 125 children with reading disabilities showed a greater deficit on average than did sisters on a continuous composite measure of reading recognition, reading comprehension and spelling (Decker & DeFries, 1980). It has been suggested that females may have a higher threshold for expression of reading and spelling disabilities than males. One prediction of a gender-influenced threshold model A threshold model in toxicology posits that anything above a certain dose of a toxin is dangerous, and anything below it safe. This model is usually applied to non-carcinogenic health hazards. Edward J. Calabrese and Linda A. is that relatives of dyslexic females would be at greater risk than relatives of dyslexic males, because dyslexic females would have higher genetic liability, that is, more dysfunctional genes inherited from their parents. This hypothesis has been supported by empiric data in several studies (DeFries, 1989; DeFries & Decker, 1982; Gilger et al., 1991), but not in others (Schulte-Korne et al., 1996; Wadsworth, Knopik, & DeFries, 2000). In one of these negative studies, it was observed that 42.9% of the first-degree relatives of the 7 female probands were spelling disabled, compared with 33.3% of the relatives of 12 male probands, but the difference was not significant (Schulte-Korne et al., 1996). However, there is no evidence to suggest that the differential prevalence of dyslexia in males and females reflects a gender difference in the etiology of the disability (Alarcon, DeFries, & Fulker, 1995; Wadsworth et al., 2000). Although a debate remains regarding the differential risk for reading and spelling disabilities in males and females, it is generally agreed that there is an age effect on the expression of these disabilities. Many adults with a history of dyslexia in childhood continue to show residual deficits on careful testing, but there is a wide variation in the severity of the disability. Even when they report subjective difficulties with reading facility, some individuals no longer evidence signs of dyslexia by achievement or discrepancy criteria (e.g., Gilger et al., 1996). Such individuals are often described as "compensated" adults. In a study of twins, the Twins, The, English name for Gemini, a constellation. estimated heritability of real-word reading was significantly higher in the subset of twins who were younger than 11.5 years old than it was in the subset who were older than 11.5 years. The converse pattern was found for spelling recognition and spelling generation, with greater heritability in the older twins, although only the results for spelling recognition reached statistical significance (DeFries, Alarcon, & Olson, 1997). Therefore, the phenomenon of compensation must be considered in family-based genetic analyses, which include subjects of many ages, especially studies that rely on quantitative test data rather than on historical report. We addressed the issues of age- and gender-influenced penetrance and expressivity in our sample of 102 nuclear families. To evaluate the frequency with which siblings and parents of the probands evidenced difficulties with component reading skills, several categorical analyses were performed for nine measures that displayed strong or weak aggregation patterns consistent with a genetic etiology (see last section). Digit Span was not included in these analyses because it is confounded by inclusion in the proVIQ for adults. The criteria described above for qualifying a proband for the study were used to determine affected status. Assuming a population prevalence of 5-10%, we observed a markedly increased incidence of dyslexia and dysgraphia in families of children with the disorder, as has been reported by other groups (Decker & DeFries, 1980; Wolff & Melngailis, 1994). For a single measure, the frequencies of affected siblings and parents ranged from 12% to 68% and 1% to 55%, respectively. Probands were affected for a mean of 6.3 of these nine measures. Despite the distorted gender ratio among the probands (2.2 males to 1 female), sisters were equally likely as brothers to exhibit difficulties on each of nine measures analyzed categorically (see Table 2). The number of measures for which a sibling was affected did not differ by sex. The size of the discrepancy between proVIQ and achievement on reading and spelling measures was similar for affected brothers and affected sisters, with the exception of WIAT spelling on which brothers demonstrated larger discrepancies (p [is less than] .05, see Table 3). The prevalence of affected status was more skewed by gender for adults. With the exception of GORT-3 Comprehension, fathers tended to be affected more often than mothers (see Table 2). Gender was statistically associated with prevalence of deficits for GORT-3 Accuracy ([chi square chi square (kī), n a nonparametric statistic used with discrete data in the form of frequency count (nominal data) or percentages or proportions that can be reduced to frequencies. ] (1, N = 203) = 8.05, p [is less than] .005) and WIAT Spelling ([chi square] (1, N = 203) = 16.09, p [is less than] .0001). In addition, affected fathers tended to evidence larger discrepancies than affected mothers on WA, GORT-3 Rate and Accuracy, and WIAT and WRAT-3 Spelling, but only the latter measured skill reached statistical significance at p [is less than] .05 (see Table 3).
Table 2
Frequency of Affected Status for Component Reading Skills in Probands
and Their First-Degree Relatives(a)
Probands Siblings
(70 males, 32 females) (46 males, 57 females)
Male Female Male Female
Measure % Aff(b) % Aff(b) % Aff(b) % Aff(b)
WA 84.3 (70) 71.9 (32) 32.6 (46) 47.4 (57)
PDE 67.6 (68) 67.7 (31) 15.9 (44) 16.4 (55)
GORT-3 Rate 92.5 (67) 84.4 (32) 36.4 (44) 27.8 (54)
GORT-3 Accuracy 91.0 (67) 71.9 (32) 34.1 (44) 33.3 (54)
GORT-3 Comprehension 58.2 (67) 40.6 (32) 31.8 (44) 22.2 (54)
WRAT-3 Spelling 84.3 (70) 78.1 (32) 35.6 (45) 35.1 (57)
WIAT Spelling 85.7 (70) 67.7 (31) 47.7 (44) 36.4 (55)
RAS 80.9 (68) 78.1 (32) 63.0 (46) 71.9 (57)
NWM 24.6 (69) 21.9 (32) 10.9 (46) 12.3 (57)
Parents
(102 pairs)
Male Female
Measure % Aff(b) % Aff(b)
WA 20.8 (101) 11.8 (102)
PDE 2.0 (102) 0 (102)
GORT-3 Rate 18.8 (101) 8.8 (102)
GORT-3 Accuracy 21.8 (101) 6.9 (102)
GORT-3 Comprehension 5.0 (101) 8.8 (102)
WRAT-3 Spelling 31.4 (102) 11.8 (102)
WIAT Spelling 20.8 (101) 2.0 (102)
RAS 61.8 (102) 48.0 (102)
NWM 3.9 (102) 2.0 (102)
(a) Some people were not tested for all the measures. In most cases
this occurred when the subject was struggling with the testing and
declined to take the measure. The Statistical Package for the
Social Sciences (SPSS) was used to analyze the data. Percent affected
did not vary systematically with gender of probands or siblings based
on [chi square] test with a continuity correction and 1 degree of
freedom. However, percent of parents affected was significantly
related to gender for GORT-3 Accuracy (at p < .005) and WIAT
spelling (p <. 0001), respectively. In both instances, fathers were
more often affected than mothers.
(b) Number tested is given in parenthesis.
Table 3
Severity of Disability for Component Measures of Reading
and Spelling Disabilities in Affected First-Degree Relatives(a,b)
Brothers (46) Sisters (57)
Mean Mean
Number Discrepancy Number Discrepancy
Measure Affected (s.d.) Affected (s.d.)
WA 15 27.0 27 25.7
(8.1) (8.9)
PDE 8 2.5 12 2.0
(0.72) (0.6)
GORT-3 16 6.0 15 5.8
Rate (2.2) (2.2)
GORT-3 15 7.0 18 5.8
Accuracy (2.7) (1.9)
GORT-3 14 5.4 12 5.3
Comprehension (1.8) (1.8)
WRAT-3 16 27.7 20 24.8
Spelling (10.2) (5.8)
WIAT 21 28.6 20 23.0
Spelling (10.7) (6.0)
Siblings Fathers (102)
Mean
Number Discrepancy
Measure t test Affected (s.d.)
WA t = 0.47 21 22.7
p = 0.64 (6.7)
PDE t = 1.69 2 1.6
p = 0.11 (0.3)
GORT-3 t = 0.27 19 5.6
Rate p = 0.78 (1.7)
GORT-3 t = 1.48 22 5.0
Accuracy p = 0.15 (1.5)
GORT-3 t = .16 5 3.8
Comprehension p = 0.88 (.8)
WRAT-3 t = 1.09 32 24.6
Spelling p = 0.28 (7.6)
WIAT t = 2.04 21 26.6
Spelling p < .05 (7.2)
Mothers (102) Parents
Mean
Number Discrepancy
Measure Affected (s.d.) t test
WA 12 22.3 t = 0.144
(9.2) p = 0.89
PDE 0 NA(c) NA(c)
GORT-3 9 4.6 t = 1.49
Rate (1.8) p = 0.15
GORT-3 7 4.6 t = 0.56
Accuracy (1.5) p = 0.58
GORT-3 9 4.6 t = -1.31
Comprehension (1.2) p = 0.22
WRAT-3 12 20.1 t = 2.01
Spelling (2.9) p = 0.05
WIAT 2 19.5 t = 1.35
Spelling (2.1) p = 0.192
(a) Shown as average discrepancy from proVIQ. Not all individuals
were tested for all measures.
(b) The severity of disability for male and female relatives was
analyzed by two-tailed t tests corrected for discontinuity
using SPSS.
(c) NA -- not applicable.
Effect of Age on Expression of Dyslexia As observed by many others, we did not detect residual disabilities in all adults who had a strong history of reading impairment as children. Our observations on the prevalence of reading and spelling deficits in parents (see Table 2), based entirely on test results, support a suggestion, based on comparison of historical and test information by Wolff and Melngailis (1994), that females may compensate more fully for reading and spelling disability than males. Although the sizes of the IQ-achievement discrepancy of mothers and fathers categorized cat·e·go·rize tr.v. cat·e·go·rized, cat·e·go·riz·ing, cat·e·go·riz·es To put into a category or categories; classify. cat as affected using the strict criteria of the research protocol were not statistically different, gender effects were found when only the subset whose achievement was below the population mean was analyzed. In these subsets of parents, the mean WRAT WRAT Wide Range Achievement Test Psychology A test that evaluates a child's basic skills of spelling, mathematics and reading–ie, educational achievement. See Psychological testing. Cf Psychiatric testing. spelling scores for fathers was 82.7 and for mothers it was 91.4 (t(78) = -3.85, p [is less than] 0.0001), the mean WIAT spelling score was 83.5 for fathers and 92.7 for mothers (t(60) = -2.88, p = 0.006), and the mean WA score was 89.5 for fathers and 93.1 for mothers (t(71) = -2.393, p [is less than] 0.019). The mean proVIQ-WRAT spelling discrepancy was 18.73 for fathers and 10.10 for mothers (t(78) = 3.65, p [is less than] 0.001) and the mean proVIQ-WIAT spelling discrepancy was 17.67 for fathers and 7.16 for mothers (t(60) = 3.84, p [is less than] 0.001). The mean discrepancies between proVIQ and WA score for fathers and mothers were not significantly different -- 13.19 for fathers and 10.9 for mothers (t(71) = 0.797, p. = 0.428). The fathers' and mothers' mean proVIQ scores were not statistically different for any of the subsets analyzed. Of interest, a study of spelling disability in German families found an excess of affected male relatives compared to female relatives, but the data were not provided to determine if the excess was entirely contributed by the parents (Schulte-Korne et al., 1996). It is possible that severity of disability correlates with probability and degree of compensation. This possibility has implications for family studies because offspring of parents with a childhood history of reading disability who still show evidence of reading disability by age- or IQ-discrepant criteria appear to be at increased risk for reading disorders than offspring of compensated parents (Gilger et al., 1996). To account for the phenomenon of age- and gender-related expressivity, age and gender were included as covariates in all our quantitative aggregation analyses. CONCLUSIONS In the past decade, genetic studies of reading and spelling disabilities have advanced our understanding of this complex heterogeneous behavioral disorder behavioral disorder Psychiatry A disorder characterized by displayed behaviors over a long period of time which significantly deviate from socially acceptable norms for a person's age and situation . Possible sites have been identified in the genome for genes involved in these phenotypes. Although the next steps -- those of cloning the genes for dyslexia and identifying their roles in normal development -- are daunting daunt tr.v. daunt·ed, daunt·ing, daunts To abate the courage of; discourage. See Synonyms at dismay. [Middle English daunten, from Old French danter, from Latin , there is reason to be optimistic op·ti·mist n. 1. One who usually expects a favorable outcome. 2. 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Requests for reprints should be addressed to: Wendy Raskind, Department of Medicine, Box 35-7720, University of Washington, Seattle, WA 98195. wendyrun@u.washington.edu WENDY H. RA. SKIND, M.D., Ph.D., is associate professor of medicine, Division of Medical Genetics, University of Washington. |
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