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Bruker Daltonics Introduces Next Level of ClinProt Biomarker Discovery, Identification and Validation Solution at ASMS 2005.


SAN ANTONIO -- Bruker Daltonics Inc.

--New ClinProt Beads for Large Proteins, Glycomics and Antigen-Specific Analysis Combine with New Releases of Advanced Biomarker Analysis Software Tools

Bruker Daltonics Inc. today announces the introduction of the next level of its leading ClinProt(TM) solution for advanced biomarker discovery, identification and validation in clinical proteomics.

The extensive ClinProt portfolio of magnetic beads for sample pre-fractionation has now been further expanded with novel capabilities to address 1) biomarker analysis of large proteins, 2) targeted glyco-protein analysis, and 3) antigen-specific enrichment of selected biomarker molecules, combined with high-performance MALDI-TOF MALDI-TOF Matrix Assisted Laser Desorption Ionization - Time of Flight  read-out read·out or read-out  
n. Computer Science
Presentation of data, usually in digital form, from calculations or storage.

Noun 1.
.

New ClinProt 'Large-Protein Beads' are designed to overcome previous limitations of biomarker discovery to peptide and small proteins, and to exploit the full mass range of up to several 100 kDaltons supported by Bruker Daltonics' cutting-edge MALDI-TOF mass spectrometers. These novel Large-Protein Beads are complemented by a new DHAP DHAP

dihydroxyacetone phosphate, an intermediate of glycolysis formed as an end product of the aldol cleavage of fructose-1,6-bisphosphate.
 matrix product, which is optimized for high molecular weight proteins.

In addition, new ClinProt 'Glyco-Beads' bridge the gap between clinical proteomics and the important field of glycomics. The unique Glyco-Beads offer multiple methods for glyco-protein enrichment, including both chemical capture or lectin-capture strategies. After glyco-protein enrichment, the ClinProt solution now offers multiple glycomics workflows: for example, profiling of all glycosylated peptides or proteins, or of selected glycan-structures can be very informative in cancer research, as many cancer cells show altered glycans on their surface. In-depth structural analysis and identification of specific glyco-proteins can then be accomplished using the Company's well-established Proteineer(TM) solution for expression proteomics, involving MALDI-TOF/TOF and/or LC-ESI-MS/MS workflows.

Finally, novel ClinProt 'Antibody-Capture Beads' allow the specific enrichment of different protein groups with the same antigen specificity or even of specific proteins, thus giving access to low-abundance proteins in plasma. Enriching specific proteins via coupling of customer-selected antibodies can give the specificity of an immunoassay Immunoassay

An assay that quantifies antigen or antibody by immunochemical means. The antigen can be a relatively simple substance such as a drug, or a complex one such as a protein or a virus.
, combined with the confidence of a mass spectrometry read-out. This allows scientists to see all proteins bound to an antibody at once, and to distinguish the specific protein from other isoforms, or from undesired cross-contamination, thereby considerably increasing the confidence in any antibody-based assay.

The new ClinProt bead products are complemented by the new, advanced ClinProTools(TM) 2.0 bioinformatics package for streamlined data interpretation. ClinProTools 2.0 combines intuitive data visualization with sophisticated pattern recognition algorithms for the determination of predictive biomarker panels. Spectra not reaching the desired quality standard can be excluded from the analysis in the graphical user interface graphical user interface (GUI)

Computer display format that allows the user to select commands, call up files, start programs, and do other routine tasks by using a mouse to point to pictorial symbols (icons) or lists of menu choices on the screen as opposed to having to
. The new proprietary QuickClassifier(TM) algorithm circumvents the common problem of model generation being extremely time-consuming. The QuickClassifier provides a classification result in a few seconds, even for large data sets. This is further complemented by a new multi-class Support Vector Machine This article or section may be confusing or unclear for some readers.
Please [improve the article] or discuss this issue on the talk page.
 (mSVM) for high-end classifications. Multiple sample classes, for example originating from different control groups or from staging of a disease, are supported by the algorithms and likewise by the visualization tools. A correlation matrix gives an overview of all positively or negatively correlated peaks, even if they have not been selected for a predictive pattern. This gives an optimal overview of co-expressed signals in a set of profiling samples.

In addition, newly introduced ProfileAnalysis(TM) 1.0 software further expands the use of electrospray ionization (ESI (Edge Side Includes) A markup language for Web pages that enables elements of a Web page to be dynamically assembled in servers distributed throughout the Internet. ) time-of-flight (TOF (Top Of Form) The beginning of a physical paper form. To position paper in many printers, the printer is turned offline, the forms are aligned properly and the TOF button is pressed. ) mass spectrometry for clinical research and pharmaceutical development applications, using Bruker Daltonics' micrOTOF(TM) ESI-TOF systems. ProfileAnalysis software is well-suited for small molecule profiling of complex biological fluids, e.g. urine. The pattern recognition process is supported by principle component analysis, and optimized visualization tools support the researcher during the application of these sophisticated mathematical approaches.

Professor Dr. Thiery, Head of the Institute for Clinical Chemistry and Laboratory Medicine in Leipzig, Germany, commented on the new ClinProt products: "In our laboratory, the ClinProt system has recently been shown to overcome reproducibility problems which were reported for chip-based pre-fractionation techniques. MALDI-TOF mass spectrometry-based profile analysis in our hands has proved to be a promising tool for future routine applications in the clinical laboratory. Our recently published standard operating procedures (Baumann et al., Clinical Chemistry 2005; 51: 973-980) for standardized sample preparation give every researcher access to proven pre-fractionation techniques when starting research in clinical proteomics."

Frank Laukien, Ph.D., President and CEO (1) (Chief Executive Officer) The highest individual in command of an organization. Typically the president of the company, the CEO reports to the Chairman of the Board.  of Bruker Daltonics, stated: "The introduction of our next level of ClinProt sample preparation beads and analysis software drives biomarker analysis one step further, as it gives access to novel applications and important assays that previously could not be addressed efficiently. Moreover, our next-generation ClinProt and Proteineer solutions now also are applicable to new fields like glyco-biology, which is expected to have significant impact in cancer research."

The next-level tools in our ClinProt solution will be presented in scientific contributions from Bruker Daltonics during the 53rd ASMS ASMS American Society for Mass Spectrometry
ASMS Association of Salaried Medical Specialists
ASMS Advanced Satellite Mobile Systems
ASMS Alabama School of Mathematics and Science
ASMS American Society for Mohs Surgery
ASMS Arkansas School for Math and Science
 conference on Mass Spectrometry in San Antonio, Texas “San Antonio” redirects here. For other uses, see San Antonio (disambiguation).
San Antonio is the second most populous city in Texas, the third most populous metropolitan area in Texas, and is the seventh most populous city in the United States. As of the 2006 U.S.
 this week.

ABOUT BRUKER BIOSCIENCES (NASDAQ NASDAQ
 in full National Association of Securities Dealers Automated Quotations

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: BRKR BRKR Breaker )

Bruker BioSciences Corporation Bruker Biosciences Corporation is a Massachusetts-based company formed in 2003 which develops and manufactures scientific instrumentation for academic research and industrial use. , headquartered in Billerica, Massachusetts, is the publicly traded parent company of Bruker Daltonics Inc. and Bruker AXS Inc. Bruker AXS is a leading developer and provider of life science and advanced materials research tools based on x-ray technology. Bruker Daltonics is a leading developer and provider of innovative life science tools based on mass spectrometry. Bruker Daltonics also offers a broad line of nuclear, biological and chemical (NBC NBC
 in full National Broadcasting Co.

Major U.S. commercial broadcasting company. It was formed in 1926 by RCA Corp., General Electric Co. (GE), and Westinghouse and was the first U.S. company to operate a broadcast network.
) detection systems for homeland security. For more information: www.bruker-biosciences.com

CAUTIONARY STATEMENT

Any statements contained in this press release that do not describe historical facts may constitute forward-looking statements as that term is defined in the Private Securities Litigation Reform Act The Private Securities Litigation Reform Act of 1995 (PSLRA) implemented several significant substantive changes affecting certain cases brought under the federal securities laws, including changes related to pleading, discovery, liability, class representation and awards fees and  of 1995. Any forward-looking statements contained herein are based on current expectations, but are subject to a number of risks and uncertainties. The factors that could cause actual future results to differ materially from current expectations include, but are not limited to, risks and uncertainties relating to the Company's reorganization strategies, integration risks, failure of conditions, technological approaches, product development, market acceptance, cost and pricing of the Company's products, changes in governmental regulations, capital spending and government funding policies, FDA FDA
abbr.
Food and Drug Administration


FDA,
n.pr See Food and Drug Administration.

FDA,
n.pr the abbreviation for the Food and Drug Administration.
 and other regulatory approvals to the extent applicable, competition, the intellectual property of others, patent protection and litigation An action brought in court to enforce a particular right. The act or process of bringing a lawsuit in and of itself; a judicial contest; any dispute.

When a person begins a civil lawsuit, the person enters into a process called litigation.
. These and other factors are identified and described in more detail in our filings with the SEC, including, without limitation, our annual report on Form 10-K for the year ended December 31, 2004, our most recent quarterly reports on Form 10-Q and our current reports on Form 8-K. We disclaim any intent or obligation to update these forward-looking statements.
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No portion of this article can be reproduced without the express written permission from the copyright holder.
Copyright 2005, Gale Group. All rights reserved. Gale Group is a Thomson Corporation Company.

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Publication:Business Wire
Geographic Code:1USA
Date:Jun 6, 2005
Words:1069
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