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Attributing effects of aqueous [c.sub.60] nano-aggregates to tetrahydrofuran decomposition products in larval zebrafish by assessment of gene expression.


BACKGROUND: [C.sub.60] is a highly insoluble nanoparticle that can form colloidal colloidal

of the nature of a colloid.


colloidal bath
a bath containing gelatin, bran, starch or similar substances, to relieve skin irritation and pruritus.
 suspended aggregates in water, which may lead to environmental exposure in aquatic organisms. Previous research has indicated toxicity from [C.sub.60] aggregate; however, effects could be because of tetrahydrofuran tetrahydrofuran: see furfural.  (THF THF tetrahydrofolic acid.

THF

tetrahydrofolic acid.
) vehicle used to prepare aggregates.

OBJECTIVE: Our goal was to investigate changes in survival and gene expression in larval larval

1. pertaining to larvae.

2. larvate.


larval migrans
see cutaneous and visceral larva migrans.
 zebrafish Danio da·ni·o  
n. pl. da·ni·os
Any of various small, often brightly colored freshwater fishes of the genera Danio and Brachydanio, native to Asia and popular as aquarium fish.
 rerio after exposure to aggregates of [C.sub.60] prepared by two methods: a) stirring and sonication sonication /son·i·ca·tion/ (son?i-ka´shun) exposure to sound waves; disruption of bacteria by exposure to high-frequency sound waves.

son·i·ca·tion
n.
 of [C.sub.60] in water ([C.sub.60]-water); and b) suspension of [C.sub.60] in THF followed by rotovaping, resuspension Noun 1. resuspension - a renewed suspension of insoluble particles after they have been precipitated
suspension - a mixture in which fine particles are suspended in a fluid where they are supported by buoyancy
 in water, and sparging The term sparging may mean:
  • Sparging (beer), a process used in brewing beer.
  • Sparging (oils), a process used in edible oils
  • Sparging (chemistry), a process used in chemistry.
 with nitrogen gas (THF-[C.sub.60]).

RESULTS: Survival of larval zebrafish was reduced in THF-[C.sub.60] and THF-water but not in [C.sub.60]-water. The greatest differences in gene expression were observed in fish exposed to THF-[C.sub.60] and most (182) of these genes were similarly expressed in fish exposed to THF-water. Significant up-regulation (3-to 7-fold) of genes involved in controlling oxidative damage was observed after exposure to THF-[C.sub.60] and THF-water. Analyses of THF-[C.sub.60] and THF-water by gas chromatography- mass spectrometry mass spectrometry
 or mass spectroscopy

Analytic technique by which chemical substances are identified by sorting gaseous ions by mass using electric and magnetic fields.
 did not detect THF but found THF oxidation products ?-butyrolactone and tetrahydro-2-furanol. Toxicity of ?-butyrolactone (72-hr lethal concentration predicted to kill 50% was 47 ppm) indicated effects in THF treatments can result from ?-butyrolactone toxicity.

CONCLUSION: This research is the first to link toxic effects directly to a THF degradation product ([gamma]-butyrolactone) rather than to [C.sub.60] and may explain toxicity attributed to [C.sub.60] in other investigations. The present work was first presented at the meeting "Overcoming Obstacles to Effective Research Design in Nanotoxicology" held 24-26 April 2006 in Cambridge, Massachusetts This article is about the city of Cambridge in Massachusetts. For the English university town, see Cambridge, England. For other places, see Cambridge (disambiguation).
Cambridge, Massachusetts is a city in the Greater Boston area of Massachusetts, United States.
, USA.

KEY WORDS: microarray, nano-[C.sub.60], nanotoxicology, THF, toxicogenomics, zebrafish. Environ Health Perspect 115:1059-1065 (2007). doi:10.1289/ehp.9757 available via http://dx.doi.org/ [Online 21 February 2007]

Nanoscience focuses on investigations of phenomena at the nanoscale and is the foundation for nanotechnology, which develops practical applications for nanomaterials (U.S. Nanotechnology Initiative 2006). Because nanomaterials have unique properties and are potentially biologically active, there is significant concern that harm to ecosystem and human health could occur after environmental contamination. According to according to
prep.
1. As stated or indicated by; on the authority of: according to historians.

2. In keeping with: according to instructions.

3.
 a recent report, carbon nanomaterials (fullerenes and nanotubes) have the highest relative frequency of occurrence in consumer products already on the market (Nanotechnology Consumer Products Inventory 2006), and these materials may contaminate con·tam·i·nate
v.
1. To make impure or unclean by contact or mixture.

2. To expose to or permeate with radioactivity.



con·tam·i·nant n.
 the environment in the future (Colvin 2003).

Fullerenes (i.e., Buckminsterfullerene buckminsterfullerene (bŭk'mĭnstərfl`ərēn', –f , or "Bucky balls") are nanomaterials that gained attention after the first preparation of [C.sub.60], a novel allotrope allotrope

Any of two or more forms of the same chemical element. They may have different arrangements of atoms in crystals of the solid—for example, graphite and diamond for carbon—or different numbers of atoms in their molecules—for example, ordinary
 of carbon consisting of 60 carbon atoms joined to form a cagelike structure (Kroto et al. 1985). The unique structure of [C.sub.60] facilitates absorption of light and transfer of this energy to triplet oxygen Triplet oxygen is the ground state of the oxygen molecule. The electron configuration of the molecule has two unpaired electrons occupying two degenerate molecular orbitals. , thereby forming the highly reactive singlet oxygen Singlet oxygen is the common name used for the two metastable states of molecular oxygen (O2) with higher energy than the ground state triplet oxygen [1].  state (Arbogast et al. 1991). High yield of singlet oxygen with consequential generation of free radicals suggests that presence of [C.sub.60] in the environment may cause oxidative damage in exposed organisms.

Release of [C.sub.60] into the environment may lead to contamination of aquatic ecosystems and presence of bioavailable nanoparticles. [C.sub.60] is exceedingly insoluble in water (2 ?10-24 mol/L; Nakamura et al. 1996); however, nanoparticles (< 220 nm) consisting of aggregates of [C.sub.60] can occur (Andrievsky et al. 1999; Scharff et al. 2004), and these aggregates are relevant for exposure in aquatic organisms (Lovern and Klaper 2006; Oberdorster 2004). Aqueous aggregates of [C.sub.60] can be generated by mixing pure [C.sub.60] in water or by use of vehicle solvents. Tetrahydrofuran (THF) has been used as a vehicle to generate aqueous aggregates of [C.sub.60] (Deguchi et al. 2001) in toxicology studies (Lovern and Klaper 2006; Oberdorster 2004), and yields water with a persistent amber color (Fortner et al. 2005). However, THF can alter surface charges of [C.sub.60] particles, and THF may be retained between adjacent [C.sub.60] molecules within aggregates (Brant brant or brant goose, common name for a species of wild sea goose. The American brant, Branta bernicla, breeds in the Arctic and winters along the Atlantic coast.  et al. 2005). Thus, there is potential that toxicity attributed to [C.sub.60] (e.g., Lovern and Klaper 2006; Oberdorster 2004) could actually result from the presence of THF or THF degradation products (Brant et al. 2005). Following our initial presentation of the present research ("Overcoming Obstacles to Effective Research Design in Nanotoxicology," Cambridge, Massachusetts, USA, 24-26 April 2006), subsequent studies (e.g., Oberdorster et al. 2006; Zhu et al. 2006) have prepared aqueous [C.sub.60] aggregates without THF or other organic solvents.

The objective of the present research was to investigate toxicity of aqueous [C.sub.60] nanoparticles in larval zebrafish Danio rerio, and to determine if THF or THF degradation products used to prepare aqueous [C.sub.60] can be responsible for toxic effects. End points of toxicity included survival, behavior, and changes in global gene expression.

Materials and Methods

Fish. Zebrafish D. rerio were obtained from the Zebrafish Research Facility at the University of Tennessee The University of Tennessee (UT), sometimes called the University of Tennessee at Knoxville (UT Knoxville or UTK), is the flagship institution of the statewide land-grant University of Tennessee public university system in the American state of Tennessee.  in Knoxville, Tennessee “Knoxville” redirects here. For other uses, see Knoxville (disambiguation).
Founded in 1786, Knoxville is the third-largest city in the state of Tennessee, behind Memphis and Nashville, and is the county seat of Knox CountyGR6.
, and all experiments were conducted with approval from the University of Tennessee Institutional Animal Care and Use Committee Institutional Animal Care and Use Committees are of central importance to the application of laws to animal research in the United States. Most research involving laboratory animals is funded by the United States National Institutes of Health or other federal agencies. . In all experiments, zebrafish were treated humanely and with regard for alleviation of suffering. Water for holding fish and conducting experiments (designated "fish water") was prepared with purified MilliQ water (Millipore Corp., Bedford, MA) with ions added: 19 mg/L [NaHCO.sub.3], 1 mg/L sea salt (Instant Ocean Synthetic Seasalt, Mentor, OH), 10 mg/L [CaSO.sub.4], 10 mg/L [MgSO.sub.4], 2 mg/L KCl. The "fish water" had the following characteristics: pH 7.3-7.9; dissolved oxygen> 6 mg/L; total alkalinity al·ka·lin·i·ty
n.
The alkali concentration or alkaline quality of a substance that contains alkali.



alkalinity

1. the quality of being alkaline.

2.
, 30-40 mg/L (as CaCO3); and total hardness, 15-20 mg/L (as CaCO3). All larvae Larvae, in Roman religion
Larvae: see lemures.
 used in experiments were obtained (Westerfield 1993) at the same time and were the same age (i.e., fertilizationoccurred within 15 min for each embryo). Temperature was 27 [+or-] 1[degrees]C and photoperiod photoperiod /pho·to·pe·ri·od/ (fo´to-per?e-od) the period of time per day that an organism is exposed to daylight (or to artificial light).photoperiod´ic

pho·to·pe·ri·od
n.
 was 14 hr of light.

Chemicals. Pure (99.5%) [C.sub.60] was obtained from SES Research SES Research is a Canadian public opinion and research company established in 1987.

For the 2004 Federal Election, SES launched a publicly available nightly tracking program, the first of its kind in Canadian election history.
 (Houston, Tx), and tetrahydrofuran (THF; HPLC HPLC high-performance liquid chromatography.

HPLC

high performance liquid chromatography.

HPLC High-performance liquid chromatography Lab instrumentation A highly sensitive analytic method in which analytes are placed
 grade) was obtained from Fisher Scientific Fisher Scientific, formally Fisher Scientific International, Inc. and colloquially Fisher was a biotechnology company that provided products and services to the global scientific research and United States clinical laboratory markets.  (Pittsburgh, PA, USA).[gamma]-Butyrolactone (purity> 99%) was obtained from Sigma Chemical Co. (St. Louis, MO).

Preparation of exposure solutions. Aqueous [C.sub.60] aggregates were prepared by two methods: a) long-term (7 days) stirring and sonication of pure [C.sub.60] in fish water ([C.sub.60]-water, 12.5 mg [C.sub.60]/500 mL); and b) use of THF as a vehicle. The procedure for generating aqueous [C.sub.60] with THF was modified from a previously reported method (Deguchi et al. 2001; Fortner et al. 2005) as follows: approximately 12.5 mg of [C.sub.60] was added to 500 mL of fresh THF in a 1-L amber bottle and sparged with UHP UHP Université Henri Poincaré (French: Henri Poincaré University)
UHP Ultra-High Performance (projector lamps)
UHP Ultra High Pressure (waterjet)
UHP Utah Highway Patrol
 (ultra high purity) nitrogen to remove oxygen. The resealed amber bottles [THF-[C.sub.60] and THF-water (vehicle control)] were stirred for 24 hr at ambient temperature. Fish water (350 mL) was added to each bottle and sparged with UHP nitrogen for 1 hr, then stirred for 24 hr at room temperature. A Buchi Rotavap system (Buchi Labortechnik AG, Flawil, Switzerland) was used to remove THF, in the dark, at 65[degrees]C, and the resulting solutions (THF-[C.sub.60] and THF-water) were sparged with nitrogen for 2.5 days before use in toxicity tests. Solutions of [C.sub.60]-water were allowed to settle and were carefully pipetted to avoid resuspension of any visible aggregates before addition of fish water to prepare dilutions for exposures. The THF-[C.sub.60] stock solution did not have any visible (naked eye) aggregates, and dilutions with highest concentrations of THF [C.sub.60] had a visible amber color. Examination of THF-[C.sub.60] solution with an enhanced dark-field microscopy system (Cytoviva, Auburn, AL) designed to resolve particles< 100 nm, demonstrated particle aggregates approximately equal to 0.5-3 times the size of latex nanoparticles of 100 nm examined under identical conditions (Figure 1A, B). This method of particle analysis evaluates particles as they appear in the exposure solution and avoids artifacts artifacts

see specimen artifacts.
 introduced by use of transmission electron microscopy “TEM” redirects here. For other uses, see TEM (disambiguation).

Transmission electron microscopy (TEM) is an imaging technique whereby a beam of electrons is transmitted through a specimen, then an image is formed, magnified and directed to appear either
 methods, which can alter particle size upon drying (Thundat et al. 1993).

Water chemistry analysis. All THF-treated water samples were analyzed for presence of THF with a Hewlett Packard 6890 gas chromatograph with a 5973N mass spectrophotometer spectrophotometer, instrument for measuring and comparing the intensities of common spectral lines in the spectra of two different sources of light. See photometry; spectroscope; spectrum.  (Agilent Technologies, Foster City, CA, USA) equipped with an inert ion source. A 1-[micro]L volume of sample water was injected into a J&W DB-5MS column (30 m x 0.25 mm ID, 0.25-[micro]m film thickness; Agilent Technologies). Helium (UHP grade) was used as a carrier gas, and a constant flow rate (0.6 mL/min) was maintained by electronic pressure control. Injection temperature was 280[degrees]C and splitless injection was employed. The oven temperature program started at 30[degrees]C, for 4 min, increased to 100[degrees]C at 5[degrees]C/min, for 2 min, then to 300[degrees]C at 50[degrees]C/min and maintained for 3 min. MS detection was monitored at full-scan EI mode (m/z 25-100). The intensity of ion m/z 86 was used for quantification of [gamma]-butyrolactone.

Fish exposures. Two dose-response toxicity tests were conducted simultaneously with the test to evaluate changes in gene expression. All fish were exposed in 400-mL glass beakers containing 100 mL exposure water, and exposure began when larvae were 75 hr of age and ended when larvae were 147 hr of age postfertilization. In dose-response toxicity tests, each beaker beaker /beak·er/ (bek´er) a glass cup, usually with a lip for pouring, used by chemists and pharmacists.

beaker

a round laboratory vessel of various materials, usually with parallel sides and often with a pouring spout.
 contained 9-13 larvae and the following concentrations of either THF-[C.sub.60] or THF-water: 0%, 1%, 5%, 10%, 20%, and 25% (vol/vol). In the test conducted to evaluate changes in gene expression, each beaker contained 37-45 larvae and the following treatments (each with six replicate beakers) were tested: control; [C.sub.60]-water (100%); THF-[C.sub.60] (2.5%); THF-[C.sub.60] (5%); THF-fish water (2.5%); THF-fish water (5%). Fish mortality was assessed 72 hr after exposure was initiated and behavior of fish in exposure solutions was recorded. Water quality characteristics (temperature, pH, and dissolved oxygen) were measured in treatments at initiation of the experiment, and values were within the range reported for fish water control (see above).

Two additional dose-response tests were conducted separately from experiments described above. The first test chemical was THF ([[d.sup.20].sub.4] = 0.8892) at the following concentrations (vol/vol): 0%, 0.04%, 0.08%, 0.16%, 0.31%, 0.63%, 1.25%, 2.5%, 5%, and 10%; and the second test chemical was [gamma]-butyrolactone ([d.sub.0.sup.15] = 1.1286) at the following test concentrations (vol/vol): 0%, 0.0001%, 0.0005%, 0.001%, 0.003%, 0.005%, 0.01%, 0.05%, and 0.1%. Procedures for these dose-response tests were identical to those described above.

Total RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
 extraction and microarray analyses. Pairs of the six replicate beakers for each treatment were combined to make three replicates for analysis of differential gene expression by microarray (three arrays per treatment). Total RNA was extracted from fish larvae that survived exposure using the RNA easy mini kit for animal tissues (Qiagen, Valencia, CA, USA). RNA was extracted from larvae using RLT RLT Revocable Living Trust
RLT Relating to
RLT Real Life Test
RLT Raleigh Little Theatre
RLT Regimental Landing Team
RLT Regional Leadership Team
RLT Real Life Technologies (trademark of Hewlett-Packard)
RLT Release Link Trunk
 buffer, purified using RNeasy columns, and included DNase digestion according to the procedure described in the RNeasy Mini Handbook for animal tissues (Qiagen 2006). Total RNA was processed by the Affymetrix Core Facility at the University of Tennessee (Knoxville, TN, USA) according to Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix 2004). Processing of total RNA included synthesis of cDNA (One-Cycle cDNA synthesis kit; Affymetrix, Santa Clara, CA, USA), biotin biotin: see vitamin; coenzyme.
biotin

Organic compound, part of the vitamin B complex, essential for growth and well-being in animals and some microorganisms.
 labeling (3IVT IVT

intravenous transfusion.
 Labeling Kit; Affymetrix), hybridization hybridization /hy·brid·iza·tion/ (hi?brid-i-za´shun)
1. crossbreeding; the act or process of producing hybrids.

2. molecular hybridization

3.
, and scanning according to standard Affymetrix protocols. For eachzebrafish array, an equal amount of labeled cRNA (5 [micro]g) was used. All arrays were assessed for quality measurements including assurance that IVT (in vitro in vitro /in vi·tro/ (in ve´tro) [L.] within a glass; observable in a test tube; in an artificial environment.

in vi·tro
adj.
In an artificial environment outside a living organism.
 transcription) glyceraldehyde-3-phosphate dehydrogenase dehydrogenase /de·hy·dro·gen·ase/ (de-hi´dro-jen-as?) an enzyme that catalyzes the transfer of hydrogen or electrons from a donor, oxidizing it, to an acceptor, reducing it.

de·hy·dro·gen·ase
n.
 (GADPH) 3/5 values were< 3, and all internal spike in controls were present at anticipated levels. The Affymetrix GeneChip Zebrafish Genome Array contains approximately 15,509 probe sets that represent 14,900 D. rerio gene transcripts. Probe sets for the array were designed by Affymetrix, members of the zebrafish community, and the National Institutes of Health investigators using public data sources: RefSeq (July 2003; http://www.ncbi.nlm.nih.gov/ RefSeq/), GenBank (Danio rerio (zebrafish) genome; release 136.0, June 2003; http:// www.ncbi.nlm.nih.gov/mapview/map_ search.cgi?taxid=7955), dbEST (Expressed Sequence Tag An expressed sequence tag or EST is a short sub-sequence of a transcribed spliced nucleotide sequence (either protein-coding or not). They may be used to identify gene transcripts, and are instrumental in gene discovery and gene sequence determination. ; July 2003; http://www. ncbi.nlm.nih.gov/dbEST), and UniGene (Build 54, June 2003; http://www.ncbi. nlm.nih.gov/UniGene/UGOrg.cgi?TAxID= 7955). Sixteen pairs of oligonucleotide 25-mer probes are used to measure the level of transcription of each sequence. Detection sensitivity is estimated at 1:100,000. Housekeeping and control genes are GADPH and alpha 1 actin. Hybridization controls included are bioB, bioC, bioD, and cre. The Affymetrix Probe Set ID and the gene title and symbol (UniGene; http://www.ncbi.nlm.nih.gov/ sites/entrez?db=unigene) are reported for annotated genes along with their GenBank accession number (http://www.ncbi.nlm.nih. gov/Genbank/index.html).

Data analysis. The 72-hr lethal concentration predicted to kill 50% of larval zebrafish ([LC.sub.50]) was computed by Trimmed Spearman-Karber method (version 1.5; U.S. Environmental Protection Agency Environmental Protection Agency (EPA), independent agency of the U.S. government, with headquarters in Washington, D.C. It was established in 1970 to reduce and control air and water pollution, noise pollution, and radiation and to ensure the safe handling and  1993). Mortality of fish in exposures used for gene expression analyses was modeled by analysis of variance (ANOVA anova

see analysis of variance.

ANOVA Analysis of variance, see there
) after arcsin transformation of mortality data (Zar 1984), and significant (p< 0.05) differences among groups were assessed by Tukey test (Proc GLM GLM Global Language Monitor
GLM Global Marine (stock symbol)
GLM Graduated Length Method (ski instruction)
GLM Good Looking Mom (used in pediatric practices)
GLM God Loves Me
, Statistical Analysis System, version 9.1; SAS Institute, Cary, NC).

Statistical assessment of differential gene expression data was conducted according to standard procedures by the University of Tennessee Affymetrix Core Facility. Intensity of expression of individual gene transcripts was obtained from scanned images of zebrafish arrays (Affymetrix 3000 7G) and signal values were obtained using the GCRMA GCRMA Guanine Cytosine Robust Multi-Array Analysis  algorithm (ArrayAssist; Stratagene La Jolla, CA, USA). Genes with a fold change in expression of< 1.75 were removed from the data set along with genes that had low signal intensity (< 16 on a scale of 65,536) indicative of minimal (i.e., background) expression. Expression of the resulting set of genes was assessed by an ANOVA model with Benjamini-Hochberg (false discovery rate, FDR) correction (ArrayAssist; Stratagene). After determination of significance (p< 0.05) of the overall ANOVA model, pairwise comparisons of each experimental treatment with the control were conducted by t-test.

Results

Water chemistry analyses. Each water sample was analyzed for presence of THF and impurities, and THF was found in all samples collected immediately after vacuum extraction vacuum extraction Obstetrics Operator-assisted delivery in which suction is applied to the skull and the fetus delivered vaginally Complications Brachial plexus injury due to shoulder dystocia, scalp injuries, intracranial–especially, . However, in water that was sparged with nitrogen gas ([N.sub.2]) for 2.5 days after vacuum extraction, THF was not detected. [gamma]-Butyrolactone and tetrahydro-2-furanol were detected in all THF-treated samples (Figure 2). Tetrahydro-2-furanol was confirmed by comparison with NIST (National Institute of Standards & Technology, Washington, DC, www.nist.gov) The standards-defining agency of the U.S. government, formerly the National Bureau of Standards. It is one of three agencies that fall under the Technology Administration (www.technology.  Mass Spectral Library (2005) because authentic standard was not available, and [gamma]-butyrolactone was determined by comparison with an authentic standard (Figure 3). Immediately after preparation, the concentration of [gamma]-butyrolactone was approximately 103 ppm and approximately 158 ppm in THF-water and THF-[C.sub.60] treatments, respectively, and after 72 hr, concentrations of [gamma]-butyrolactone increased to approximately 164 ppm in THF-water and approximately 175 ppm in THF-[C.sub.60].[gamma]-Butyrolactone and tetrahydro-2-furanol were detected by (gas chromatography-mass spectrometry (GC-MS GC-MS Gas chromatography-mass spectroscopy. See there. ) in some freshly opened THF bottles prior to use in experiments.

Larval fish survival. No fish died during 72-hr exposure in the control, and mortality increased with concentration in both THF-water and THF-[C.sub.60] with [LC.sub.50] values of 6.3% [95% confidence interval confidence interval,
n a statistical device used to determine the range within which an acceptable datum would fall. Confidence intervals are usually expressed in percentages, typically 95% or 99%.
 (CI), 5.1-7.8%] and 3.1% (95% CI, 2.3-4.2%) respectively. At higher concentrations (> 5%) in THF-water and THF-[C.sub.60], lethal effects were observed within 60 min, and fish typically had arched backs and occasionally had severe yolk-sac and pericardial pericardial /peri·car·di·al/ (-kahr´de-al)
1. pertaining to the pericardium.

2. surrounding the heart.


pericardial

pertaining to the pericardium.
 edema edema (ĭdē`mə), abnormal accumulation of fluid in the body tissues or in the body cavities causing swelling or distention of the affected parts. . In concentrations with significant partial mortality (i.e., 5% exposure concentration), surviving fish were lethargic, laterally recumbent recumbent /re·cum·bent/ (re-kum´bent) lying down.

re·cum·bent
adj.
Lying down, especially in a position of comfort; reclining.
, and typically had minor to severe yolk-sac and/orpericardial edema. Swimming movements were limited to abrupt spasms that occurred only when fish were disturbed. Fish exposed to concentrations of 1% appeared more lethargic than control fish but did not have any grossly visible indications of toxicity (e.g., tissue edema, or uncoordinated un·co·or·di·nat·ed  
adj.
1. Lacking physical or mental coordination.

2. Lacking planning, method, or organization.



un
 swimming). For larvae exposed in the experiment designed for analysis of gene expression, mortality was significantly higher in 5% THF-[C.sub.60]60 than in 5% THF-water, and both treatments had significantly higher mortality than 2.5% THF-[C.sub.60], 2.5% THF-water, and [C.sub.60]-water, which did not differ significantly from the control (Figure 4).

No control fish died in either THF or [gamma]-butyrolactone 72-hr dose-response tests and mortality increased with concentration of each test chemical. For THF, the [LC.sub.50] was 1.73% (95% CI, 1.65-1.81%), whereas the [LC.sub.50] for [gamma]-butyrolactone was 0.0047% (95% CI, 0.0038-0.0058%). Analyzed concentrations of test chemicals were within 10% of nominal concentrations in dose-response tests, and [gamma]-butyrolactone was not detected in water samples in the dose-response test with THF.

Gene expression. Gene expression was evaluated in total RNA samples from the control, [C.sub.60]-water, 2.5% THF-[C.sub.60], and 2.5% THF treatments. The total numbers of genes in which significant changes in expression were detected relative to the control were 10 in [C.sub.60]-water, 217 in THF-water, and 271 in THF-[C.Sub.60]. Array data files were uploaded to the Stanford microarray database installed at the University of Tennessee Microarray Database (UT-MD) and are available for public access (UT-MD 2007). Genes not assigned by gene ontology to a biological process, cellular component, or molecular function (unannotated genes) included 40-50% of the observed genes that were differentially expressed. Of the 10 genes differentially regulated in [C.sub.60]-water relative to control, only 2 (both unannotated) were up-regulated (Table 1).
Table 1. Differentially expressed genes identified by microarray analyses of larval zebrafish after exposure to [C.sub.60]-water in comparison to control.

Affymetrix                          GenBank         Fold
Probe setID         Gene title       accession       difference
                    (gene symbol)    no (a)

DrAffx.3.1.A1 (b)   CDNA clone       Bx296557.35     -6.29
                    MGC:113968

DrAffx.1.85.A1 (c)  a                AY325265.1      -2.44

Dr.2619.1.S1 (d)    RNA binding      AL929434.3      -2.22
                    motif protein,
                    x-linked
                    (rbmx)

Dr.6431.1.S1 (e)    zgc:56537        NM_199950.1     -2.10
                    (zgc:56537)

Dr.691.1.S1 (f)     zgc:101565       NM_001004641.1  -1.90
                   (zgc:101565)

Dr.25536.1.A1 (g)   Similar to Heat  CR381646.8      -1.86
                    shock protein
                    HSP 90-alpha
                    (HSP 86)
                    (DKEY-241L7.8)

Dr.3448.1.S1 (h)    Krupple-like     NM_131856.1     -1.78
                    factor 2a
                    (klf2a)

Dr.20524.1.A1       wu:fj52d04       NM_001045321.1  -1.75
                    (wu:fj52d04)

Dr.26327.1.A1       DiGeorge         Bx088551.7       1.90
                    syndrome
                    critical region
                    gene 8 (dgcr8)

Dr.7842.1.A1        wu:fj15c09       CR548643.7       2.10
                    (wu:fj15c09)


Affymetrix
Probe setID         p-Value   Description/function

DrAffx.3.1.A1 (b)   0.019     Transport, nuclear
                              pore

DrAffx.1.85.A1 (c)  0.005     Unknown

Dr.2619.1.S1 (d)    0.006     Nucleotide binding

Dr.6431.1.S1 (e)    0.001     Intracellular
                              signaling

Dr.691.1.S1 (f)     0.005     Metabolism,
                              oxidoreductase

Dr.25536.1.A1 (g)   0.000     Unknown

Dr.3448.1.S1 (h)    0.045     Nucleic acid binding

Dr.20524.1.A1       0.029     Unknown

Dr.26327.1.A1       0.023     Unknown

Dr.7842.1.A1        0.001     Unknown

(a) Accession numbers are from GenBank (http://www.ncbi.nlm.nih.gov/Genbank/).
Genes were also differentially regulated relative to control for THF-water
treatment; fold changes were (b) -4.53, (c) -2.29, (d) -1.88,(f)-1.76.
Genes also differentially regulated relative to control for THF-[C.sub.60]
treatment; fold changes were (e) 1.76, (g) -1.86, (h) -1.78.


Some of the same genes that were differently regulated relative to the control were found in multiple treatments (Figure 5). In [C.sub.60]-water, there were 4 genes in common with THF-water treatment and 3 genes in common with THF-[C.sub.60] treatment; however, the magnitude and direction (i.e., up-regulation or down-regulation) of change in expression were not necessarily consistent (Table 1). For the 3 genes that were in common between [C.sub.60]-water and THF-[C.sub.60], only one (Dr.3448.1.S1, Kruppel-like factor 2a, klf2a) had a similar change in expression relative to control (-1.85-fold, THF-[C.sub.60]; -1.78-fold, [C.sub.60]-water). The two THF treatments had 182 genes in common and change in expression of these genes was identical in direction but differed in magnitude (Figure 6). The magnitude of change in expression was higher for 133 of the 182 genes (73%) in THF-[C.sub.60] than in THF-water. Of particular interest were highly up-regulated genes relative to control in both THF treatments that corresponded to enzymes with oxido-reductase and peroxidase peroxidase /per·ox·i·dase/ (per-ok´si-das) any of a group of iron-porphyrin enzymes that catalyze the oxidation of some organic substrates in the presence of hydrogen peroxide.

per·ox·i·dase
n.
 activity (Table 2).
Table 2. Selected up-regulated genes in larval zebrafish
in THF-water and THF-[C.sub.60] compared to control.

Affymetrix
Probe Set ID          Gene title (gene symbol)

Dr.10624.1.S1 (a)     zgc:110343 (zgc:110343)

Dr.23788.1.S1 (b)     Glutathione S-transferase
                     (gstp1)

Dr.9492.1.A1 (c)      zgc:113156, hypothetical
                      protein (zgc:113156)

Affymetrix            Expression change (fold)
Probe Set             THF-[C.sub.60]    THF-water

Dr.10624.1.S1 (a)          7.00       7.32

Dr.23788.1.S1 (b)          5.39       6.05

Dr.9492.1.A1 (c)           3.69       3.43

Affymetrix
Probe Set             Description/function

Dr.10624.1.S1 (a)     Peroxidase activity, antioxidant activity

Dr.23788.1.S1 (b)     Metabolism, glutathione transferase activity

Dr.9492.1.A1 (c)      Oxidoreductase activity

No significant changes in expression were observed for these genes between
THF-[C.sub.60] and THF-water treatments.GenBank accession numbers
(http://www.ncbi.nlm.nih.gov/Genbank/): (a)AL954171.10; (b)NM_131734.3,
AF285098.1;(c)xM_696730.1, NM_001017881.1.


Both THF-water and THF-[C.sub.60] treatments induced significant changes in gene expression in zebrafish; however, not all genes identified as significant were the same in each treatment relative to the control (Figure 5). In THF-[C.sub.60], 89 genes differed significantly from control but did not differ in THF-water compared with control; however, examination of the expression of these 89 genes in THF- water indicated that direction of change in expression relative to the that in control was identical to THF-[C.sub.60] (Figure 7A). The magnitude of change in expression for these 89 genes in THF-water relative to that in control was< 1.75-fold, and therefore these genes did not meet selection criteria established for statistical analyses. The same pattern was observed for 33 of the 35 genes that were recognized in THF-water as different from control, but that did not differ in THF-[C.sub.60] compared with control (i.e., the magnitude of expression change was< 1.75-fold in THF-[C.sub.60]; Figure 7B). Only 2 genes exhibited a different pattern of expression change, and these 2 genes were down-regulated in THF-water but up-regulated in THF-[C.sub.60] (genes 1 and 2; Figure 7B). When changes in gene expression were compared directly between THF-water and THF-[C.sub.60], these 2 genes (Affymetrix probe set identification numbers: DrAffx.3.1.A1, DrAffx.1.85.A1) were the most up-regulated genes after exposure to THF-[C.sub.60]. Expression of a third unannotated gene (Dr.955.1.A1, Wu:fb98b06) differed between THF-[C.sub.60] and THF-water but differences in expression were not detected for this gene when either treatment was compared with control. Four genes (Dr.10914.1.A1; Dr.15281.1.A1, tissue inhibitor of metalloproteinase 2-like, timp2l; Dr.967.1.S1, matrix metalloproteinase 9, mmp9; Dr.10314.1.S1, matrix metalloproteinase 13, mmp13) were up-regulated in both treatments relative to control, but upregulation was higher in THF-[C.sub.60] and expression of these genes differed significantly when compared with THF-water.

Discussion

Survival of zebrafish larvae was affected only in THF-[C.sub.60] and THF-water and was not affected in [C.sub.60]-water or in the control. Mortality of fish in THF treatments was concentration dependent. Analyses of water samples by GC-MS did not detect THF, and the 72-hr acute toxicity acute toxicity Pharmacology Illness caused by a single exposure to a toxic substance  of THF determined in the dose-response test indicated that THF is oflow toxicity in larval zebrafish ([LC.sub.50] = 1.73%; ~ 15.4 g/L). Thus, any trace amounts of THF in THF-[C.sub.60] and THF-water treatments did not explain the observed fish mortality. However, use of THF as a vehicle resulted in generation of substances in the water that were detected by GC-MS and could be responsible for toxic effects. Notable among these substances was [gamma]-butyrolactone, which was shown to be acutely toxic at low concentrations (72-hr [LC.sub.50], 0.0047%; ~ 47 mg/L based on dilution of analyzed prepared solution) in larval zebrafish in this study. Estimated concentrations of [gamma]-butyrolactone (based on dilution of the analyzed prepared solution) at the [LC.sub.50] for THF-water and THF-[C.sub,60] treatments were 10 and 5 mg/L, respectively, at the end of exposure.

[gamma]-Butyrolactone is a colorless liquid that is soluble in water (Ciolino et al. 2001) and rapidly absorbed in mammals where it is readily converted into the neurotransmitter neurotransmitter, chemical that transmits information across the junction (synapse) that separates one nerve cell (neuron) from another nerve cell or a muscle. Neurotransmitters are stored in the nerve cell's bulbous end (axon).  gamma amino butyric acid butyric acid (bytĭr`ĭk) or butanoic acid (by  (GABA GABA ?.

GABA
abbr.
gamma-aminobutyric acid


GABA (gamma-aminobutyric acid)
A neurotransmitter that slows down the activity of nerve cells in the brain.
) in several steps by enzyme action (Bernasconi et al. 1999). In zebrafish, GABA receptors are responsive within 96 hr of fertilization (Saint-Amant and Drapeau 2000) and may be involved in control of ventilatory movements during early larval zebrafish development (Turesson et al. 2006). The toxicity of [gamma]-butyrolactone in zebrafish has not been investigated previously; however, unpublished data indicate acute (48 hr) toxicity in fish (golden orfe Leuciscus idus) with [LC.sub.50] of 275-302 mg/L and in the daphnid Daphnia magna with an [LC.sub.50] of> 500 mg/L (Lyondell Chemical Company Lyondell Chemical Company NYSE: LYO is an American multinational corporation based in Houston, Texas. Overview
The Lyondell Chemical Company is currently the third largest independent chemical manufacturer in the United States.
 2004).

The present research is the first to demonstrate that compounds other than THF or [C.sub.60] may be responsible for toxicity observed in treatments in which THF was used as a vehicle for [C.sub.60]. Toxic effects of THF-[C.sub.60] have been observed in largemouth bass largemouth bass

see micropterus salmoides.
 Micropterus salmoides Micropterus salmoides

finfish in family Centrarchidae. Called also largemouth bass. See Table 23.
 (Oberdorster 2004), D. magna (Lovern and Klaper 2006), and in cultured cell lines (Sayes et al. 2004). The procedure we used to prepare THF-[C.sub.60] described here differs from previously published methods in the manner that THF was removed from the sample and assessment of any residual THF. Previous studies (e.g., Lovern and Klaper 2006; Oberdorster 2004) used two sequential rotovaping and water suspension cycles followed by filtration prior to preparation of [C.sub.60] dilutions. Complete removal of THF was assumed and analysis for THF or THF degradation products was not performed. In the present method, subsequent to rotovaping, samples were sparged with N2 for 2.5 days to ensure THF removal. Samples were analyzed with GC-MS and although no residual THF was found, THF degradation products were found. Despite the effectiveness of THF removal, THF degradation products were retained in the sample. Although it is conjectural con·jec·tur·al  
adj.
1. Based on or involving conjecture. See Synonyms at supposed.

2. Tending to conjecture.



con·jec
 to make statements about the previously published method because GC-MS was not performed, it is unlikely that all THF products were removed using that method. In the present study we demonstrate that THF degradation products can contribute to toxicity in THF-[C.sub.60] solutions and previous research (Lovern and Klaper 2006; Oberdorster 2004; Sayes et al. 2004) cannot exclude that THF or THF degradation products did not contribute to toxic effects. It is interesting to note that the particle diameter of [C.sub.60] aggregates showed no significant difference between filtered and nonfiltered samples under the same sample preparation technique (Cheng et al. 2006).

Most relevant to the present investigation is research in largemouth bass (Oberdorster 2004), which indicated oxidative injury in the brain resulted after exposure to THF-[C.sub.60]. Oberdorster (2004) directly determined lipid peroxidation in the brain by the thiobarbituric acid thiobarbituric acid /thio·bar·bi·tu·ric ac·id/ (thi?o-bahr?bi-tu´rik) a condensation of malonic acid and thiourea, closely related to barbituric acid.  (TBA TBA

See: To be announced
) assay for malondialdehyde and found higher peroxidation of lipids in fish exposed to THF-[C.sub.60]. We did not investigate oxidative injury directly in zebrafish, but analyses of gene expression can provide important insight on organism physiology and be used to deduce affected metabolic pathways (Brazma et al. 2001). Up-regulation of genes with antioxidant antioxidant, substance that prevents or slows the breakdown of another substance by oxygen. Synthetic and natural antioxidants are used to slow the deterioration of gasoline and rubber, and such antioxidants as vitamin C (ascorbic acid), butylated hydroxytoluene  activity (including glutathione S-transferase) in THF-water and THF-[C.sub.60] treatments in the present study is consistent with the hypothesis that fish were responding to defend against oxidative injury resulting from exposure to oxidative chemicals. Oxidative injury in the brains of largemouth bass observed by Oberdorster (2004) could have resulted from oxidative substances generated by THF vehicle rather than [C.sub.60] directly.

Changes in global gene expression were nearly identical in THF-water and THF-[C.sub.60] treatments, and these results indicate that fish were responding to similar exposure scenarios in both treatments. Although expression of specific genes that had significant changes in expression could be probed further with additional techniques [e.g., quantitative reverse transcriptase Reverse transcriptase

Any of the deoxyribonucleic acid (DNA) polymerases present in particles of retroviruses which are able to carry out DNA synthesis using an RNA template.
 polymerase chain reaction polymerase chain reaction (pŏl`ĭmərās') (PCR), laboratory process in which a particular DNA segment from a mixture of DNA chains is rapidly replicated, producing a large, readily analyzed sample of a piece of DNA; the process is  (qRT-PCR)] to clarify how a treatment affects particular genes, changes in expression appear related to the presence of THF or THF degradation products rather than [C.sub.60]. Therefore, further pursuit of these genes (e.g., genes listed in Table 2) as biomarkers of exposure to [C.sub.60] was not warranted.

THF-[C.sub.60] was more toxic than THF- water based on larval zebrafish survival (5% concentration) and gene expression patterns (2.5% concentration). The magnitude of the change in gene expression was higher in THF-[C.sub.60] for 73% of the 182 genes that were in common between THF treatments, and of the 124 genes that differed separately from the control (89 genes THF-[C.sub.60], 35 genes THF-water) 72% had a higher magnitude of expression change in THF-[C.sub.60]. These results may be explained by either higher concentrations of [gamma]-butyrolactone (or other THF degradation products) in THF-[C.sub.60], by presence of [C.sub.60], or possibly by an interaction between the [C.sub.60] and [gamma]-butyrolactone (or other THF degradation products). The concentration of [gamma]-butyrolactone was higher in THF-[C.sub.60] (stock solutions after preparation: ~ 158 ppm in THF-[C.sub.60]; ~ 103 ppm in THF-water); this could have resulted from differences in evaporation of water during preparation (particularly during [N.sub.2] sparging) or, perhaps, the presence of [C.sub.60] enhanced the formation of [gamma]-butyrolactone. This investigation was not designed to determine if [C.sub.60] could influence formation of [gamma]-butyrolactone; however, further investigation into this possibility is warranted.

Larval zebrafish exposed to [C.sub.60] ([C.sub.60]-water treatment) did not die as a result of exposure, and gene expression changes relative to the control were relatively minimal. Of the 10 genes with altered expression, only 2 genes were up-regulated and the function of these genes was unknown (unannotated). Further investigation is required to determine if these two up-regulated genes indicate exposure to aqueous [C.sub.60] aggregates and the physiologic importance of those biochemical pathways. For the 8 down-regulated genes, 3 were related by electronic annotation to a known function. Modulation of the heatshock gene indicates a general stress response; however, down-regulation of this gene is difficult to interpret. Similarly, down-regulation of the gene that codes for an RNA binding factor and the gene with homology homology (hōmŏl`əjē), in biology, the correspondence between structures of different species that is attributable to their evolutionary descent from a common ancestor.  to a Kruppel-like factor (KLF) is difficult to interpret but could suggest a global modulation of transcription in response to [C.sub.60] exposure (although changes in global modulation of transcription is not supported by changes in expression in other genes). The KLF family of transcription factors bind to Sp1 sequences, modulations of which have been implicated im·pli·cate  
tr.v. im·pli·cat·ed, im·pli·cat·ing, im·pli·cates
1. To involve or connect intimately or incriminatingly: evidence that implicates others in the plot.

2.
 in growth-related signal transduction pathways as well as apoptosis, angiogenesis angiogenesis /an·gio·gen·e·sis/ (-jen´e-sis) vasculogenesis; development of blood vessels either in the embryo or in the form of neovascularization or revascularization.

an·gi·o·gen·e·sis
n.
, and tumorgenesis (Black et al. 2001). The rather minimal change in global gene expression observed when zebrafish larvae were exposed to [C.sub.60]-water indicates that the exposure scenario used in this investigation had only minimal effects on the fish. Longer exposures to [C.sub.60] or other exposure scenarios (different species, life history stages) may result in different effects. A final point is as that changes in gene expression were investigated after a 72-hr exposure, presumably pre·sum·a·ble  
adj.
That can be presumed or taken for granted; reasonable as a supposition: presumable causes of the disaster.
 the expression of these genes (and likely other genes) will be affected differently after different exposure durations and at different zebrafish life history stages.

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Address correspondence to T.B. Henry, 676 Dabney Hall, University of Tennessee, Knoxville, TN 37996-1605 USA. Telephone: (865) 974-8080. Fax: (865) 974-8086. E-mail: thenry8@utk.edu

This work was first presented at the meeting "Overcoming Obstacles to Effective Research Design in Nanotoxicology" held 24-26 April 2006 in Cambridge, Massachusetts, USA.

We thank J. Gouffon and P. Chimakurthy at the University of Tennessee Affymetrix Core Facility; N. Bond and S. Goss for laboratory assistance; and J. Sanseverino, J. Gouffon, and A. Layton for reviews of the manuscript.

Funding for this research was provided by the Waste Management Research and Education Institute at the University of Tennessee.

The authors declare they have no competing financial interests.

Received 22 September 2006; accepted 21 February 2007.

Theodore B. Henry (1), Fu-Min Menn (1), James T. Fleming (1),John Wilgus (1), Robert N. Compton (1) (2), and Gary S. Sayler (1)(3)(4)

(1) The Center for Environmental Biotechnology, (2) Department of Chemistry, (3) Department of Microbiology, and (4)Department of Ecology and Evolutionary Biology Some U.S. universities are home to degree programs entitled Ecology and Evolutionary Biology, offering integrated studies in the disciplines of ecology and evolutionary biology. , University of Tennessee, Knoxville, Tennessee, USA
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Title Annotation:Research
Author:Henry, Theodore B.; Menn, Fu-Min; Fleming, James T.; Wilgus, John; Compton, Robert N.; Sayler, Gary
Publication:Environmental Health Perspectives
Date:Jul 1, 2007
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