Applied Biosystems Offers Commentary About Discovery of Increased Genetic Variation in Human Genome.New Discovery Underscores Need for Next-Generation Sequencing Technology; Advancements to SOLiD[TM] System Include Highest Throughput and Accuracy for Genetic Analysis Available Today SOLiD System Is the First Next-Generation Platform to Achieve 4 Billion Bases of Sequence Data; Expected to Aid Complex Genome Studies SAN DIEGO San Diego (săn dēā`gō), city (1990 pop. 1,110,549), seat of San Diego co., S Calif., on San Diego Bay; inc. 1850. San Diego includes the unincorporated communities of La Jolla and Spring Valley. Coronado is across the bay. -- This month in PLoS Biology PLoS Biology is a scientific journal covering the full spectrum of the biological sciences that began operation on October 13, 2003. It was the first journal of the Public Library of Science (PLoS) a non-profit organization which releases scientific content under open (vol. 5, issue 10), researchers published results from the sequencing of the first human diploid diploid /dip·loid/ (dip´loid) 1. having two sets of chromosomes, as normally found in the somatic cells; in humans, the diploid number is 46. 2. an individual or cell having two full sets of homologous chromosomes. genome; all the DNA DNA: see nucleic acid. DNA or deoxyribonucleic acid One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes. from both sets of chromosomes. This landmark sequencing study has shed light on how scientists will carry out future analyses of human genomes The human genome is the genome of Homo sapiens, which is composed of 24 distinct pairs of chromosomes (22 autosomal + X + Y) with a total of approximately 3 billion DNA base pairs containing an estimated 20,000–25,000 genes. . The study revealed that there is as much as 5-times more genetic variation between two individuals than was previously estimated. To understand how that variation contributes to disease or individual response to treatment for disease, researchers will need to identify the amount, kind, and specific location of variations within the genome. At the Genome, Medicine and the Environment meeting, a three-day gathering of many of the world's leading genomics researchers, Kevin McKernan, Ph.D., one of the inventors of the SOLiD[TM] System, Applied Biosystems' next-generation DNA sequencing DNA sequencing The determination of the sequence of nucleotides in a sample of DNA. platform, today said that this discovery will fundamentally change the way people approach and conduct genomics-related research. As a result, life scientists using next-generation sequencing technologies to pursue the study of complex genomes will require systems capable of addressing this increased genetic variation. The majority of genetic differences between individuals are represented by single base changes, or SNPs (single nucleotide polymorphisms Noun 1. single nucleotide polymorphism - (genetics) genetic variation in a DNA sequence that occurs when a single nucleotide in a genome is altered; SNPs are usually considered to be point mutations that have been evolutionarily successful enough to recur in a ), which are scattered throughout the approximately 3 billion bases of the human genome. In the PLoS Biology study, researchers identified more than 1.2 million previously unknown genetic variants, including SNPs and structural variants. McKernan believes that high throughput, scalability, and accuracy of emerging genetic analysis technologies will be the ultimate success factors for associating this increased genetic variation with how individuals respond to treatments for disease. "This finding is a calling for us to raise the bar, to usher in Verb 1. usher in - be a precursor of; "The fall of the Berlin Wall ushered in the post-Cold War period" inaugurate, introduce commence, lead off, start, begin - set in motion, cause to start; "The U.S. the next-generation life sciences era, in which highly sophisticated technologies will be required to fulfill the promise of next-generation sequencing," said McKernan, a senior director for Applied Biosystems' molecular and cell biology Cell biology The study of the activities, functions, properties, and structures of cells. Cells were discovered in the middle of the seventeenth century after the microscope was invented. division. "To unlock the hidden knowledge in complex genomes, researchers will need ultra-high-throughput platforms capable of producing highly accurate sequence data and the ability to scale those systems to support future studies of increasing complexity." Next-generation sequencing platforms capable of ultra-high-throughput will become more common for the study of complex genomes because as the technologies mature, the cost of analysis will continue to decrease. As part of its continued development of next-generation sequencing technology, Applied Biosystems Applied Biosystems, Inc. (formerly NASDAQ: ABIO) is the original name of a pioneer biotechnology company founded in 1981 in Foster City, California, among the Silicon Valley cities of the southern San Francisco Bay Area. (NYSE NYSE See: New York Stock Exchange :ABI Abi (ā`bī) [short for Abijah], in the Bible, King Hezekiah's mother. (Application Binary Interface) A specification for a specific hardware platform combined with the operating system. ), an Applera Corporation business, today announced that the SOLiD System is currently the industry's highest throughput next-generation sequencing platform. In Applied Biosystems' development laboratories, the SOLiD System has generated sequence data that has exceeded 4 gigabases (GB). This sequence data has been shared with some of the company's early access customers and collaborators. This output of sequence per run surpasses the number of bases that comprise the entire human genome, which makes this system effective for carrying out whole human genome studies. Applied Biosystems achieved this advanced throughput by enriching the beads on the system. Beads are an integral part of the SOLiD System's open-slide format architecture, enabling the platform to be scaled to support a higher density of sequence per slide. The combination of the open-slide format, bead enrichment, and software algorithms provide the infrastructure for allowing it to scale to even higher throughput, without significant changes to the platform's current hardware or software. Applied Biosystems' development team reports that over the past 15 months, the SOLiD System has doubled its throughput every 3 months. McKernan and the development team believe the system's architecture may support even higher levels of throughput that will facilitate the study of complex genomes. Along with the scalable bead technology, mate-paired library preparation is a method that enables highly accurate mapping and sequence assembly. This combination, which is unique to the SOLiD System, helps researchers to cost effectively identify specific genomic regions where structural variations are located. This is significant because a key finding of the individual human genome study revealed that structural variation accounts for almost 74% of the variant DNA sequence DNA sequence Genetics The precise order of bases–A,T,G,C–in a segment of DNA, gene, chromosome, or an entire genome. See Base pair, Base sequence analysis, Chromosome, Gene, Genome. in the human genome. A key to understanding structural variation is the ability to visualize structural rearrangements, such as gene copy number variations, single-base duplications, inversions, insertions, and deletions. The SOLiD System is currently generating read lengths of 35 base pairs - a 30% increase from 6 months ago - which increases the accuracy of locating where both single base and structural variation occurs. Increased read lengths provide researchers using the SOLiD System a raw base accuracy greater than 99.94% due to 2-base encoding See encode. , a mechanism that discriminates random or systematic errors from true SNPs. This represents a 5-fold better performance than any data currently published to date on alternative next-generation platforms. Applied Biosystems believes that in order to understand the role of genetics in health and disease, researchers will need a robust next-generation sequencing system that can identify the location of structural variation in genomes. "We recognize the paradigm shift A dramatic change in methodology or practice. It often refers to a major change in thinking and planning, which ultimately changes the way projects are implemented. For example, accessing applications and data from the Web instead of from local servers is a paradigm shift. See paradigm. created by the PLoS Biology study and believe that technical advancements made to the SOLiD platform uniquely position it to address the increased genetic variation in the human genome," said McKernan. "We expect that the advancements to the throughput, accuracy, and scalability of the SOLiD System will enable researchers to make more meaningful associations between genetic variation and medical conditions See carpal tunnel syndrome, computer vision syndrome, dry eyes and deep vein thrombosis. . This is expected to be crucial in the emerging era of personalized medicine Applied Biosystems is a global leader in the development and commercialization of instrument-based systems, consumables, software, and services for the life-science market and is the recognized market leader in the commercialization of DNA sequencing platforms. In the study that reported the first sequencing of an individual's diploid genome, researchers used Applied Biosystems' 3730xl DNA Analyzers and BigDye([R]) Terminator (1) A character that ends a string of alphanumeric characters. (2) A hardware component that is connected to the last peripheral device in a series or the last node in a network. chemistry to sequence the DNA. By having a diploid genome, the researchers were able to compare DNA from both sets of chromosomes, which revealed the amount of genetic variation. This was the same DNA sequencing platform that helped scientists to sequence the first human genome, a composite genome of several individuals. In developing the SOLiD System, Applied Biosystems continues its leadership in DNA sequencing by commercializing a technology that helps scientists to better understand and treat disease based on genomic information. Applied Biosystems will officially announce the commercial availability of the SOLiD System later this month. Further information about the SOLiD System is available at http://solid.appliedbiosystems.com. About Applera Corporation and Applied Biosystems Applera Corporation consists of two operating groups. The Applied Biosystems Group serves the life science industry and research community by developing and marketing instrument-based systems, consumables, software, and services. Its customers use these tools to analyze nucleic acids Nucleic acids The cellular molecules DNA and RNA that act as coded instructions for the production of proteins and are copied for transmission of inherited traits. (DNA and RNA RNA: see nucleic acid. RNA in full ribonucleic acid One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic ), small molecules, and proteins to make scientific discoveries and develop new pharmaceuticals. The Applied Biosystems' products also serve the needs of some markets outside of life science research, which we refer to as "applied markets." These include the fields of human identity testing (forensic and paternity testing paternity testing see parentage testing. ); biosecurity, which refers to products needed in response to the threat of biological terrorism Noun 1. biological terrorism - terrorism using the weapons of biological warfare bioterrorism act of terrorism, terrorism, terrorist act - the calculated use of violence (or the threat of violence) against civilians in order to attain goals that are and other malicious, accidental, and natural biological dangers; and quality and safety testing, such as testing required for food and pharmaceutical manufacturing. Applied Biosystems is headquartered in Foster City, CA, and reported sales of approximately $2.1 billion during fiscal 2007. The Celera Group is primarily a molecular diagnostics business that is using proprietary genomics and proteomics discovery platforms to identify and validate novel diagnostic markers, and is developing diagnostic products based on these markers as well as other known markers. Celera maintains a strategic alliance with Abbott for the development and commercialization of molecular, or nucleic acid-based, diagnostic products, and it is also developing new diagnostic products outside of this alliance. Through its genomics and proteomics research efforts, Celera is also discovering and validating therapeutic targets, and it is seeking strategic partnerships to develop therapeutic products based on these discovered targets. Information about Applera Corporation, including reports and other information filed by the company with the Securities and Exchange Commission, is available at http://www.applera.com, or by telephoning 800.762.6923. Information about Applied Biosystems is available at http://www.appliedbiosystems.com. Applied Biosystems Forward Looking Statements Certain statements in this press release are forward-looking. These may be identified by the use of forward-looking words or phrases such as "should, "planned," and "expect," among others. These forward-looking statements forward-looking statement A projected financial statement based on management expectations. A forward-looking statement involves risks with regard to the accuracy of assumptions underlying the projections. are based on Applera Corporation's current expectations. The Private Securities Litigation Reform Act The Private Securities Litigation Reform Act of 1995 (PSLRA) implemented several significant substantive changes affecting certain cases brought under the federal securities laws, including changes related to pleading, discovery, liability, class representation and awards fees and of 1995 provides a "safe harbor Safe Harbor 1. A legal provision to reduce or eliminate liability as long as good faith is demonstrated. 2. A form of shark repellent implemented by a target company acquiring a business that is so poorly regulated that the target itself is less attractive. " for such forward-looking statements. In order to comply with the terms of the safe harbor, Applera Corporation notes that a variety of factors could cause actual results and experience to differ materially from the anticipated results or other expectations expressed in such forward-looking statements. These factors include but are not limited to: (1) rapidly changing technology and dependence on the development and customer acceptance of new products; (2) the risk of unanticipated difficulties associated with the further development of the SOLiD[TM] System; (3) sales dependent on customers' capital spending capital spending Spending for long-term assets such as factories, equipment, machinery, and buildings that permits the production of more goods and services in future years. policies and government-sponsored research; and (4) other factors that might be described from time to time in Applera Corporation's filings with the Securities and Exchange Commission. All information in this press release is as of the date of the release, and Applera does not undertake any duty to update this information, including any forward-looking statements, unless required by law. For Research Use Only. Not for use in diagnostic procedures. (c)Copyright 2007. Applied Biosystems. All rights reserved. Applera, Applied Biosystems, AB (Design) and BigDye are registered trademarks and SOLiD is a trademark of Applera Corporation or its subsidiaries in the U.S. and/or certain other countries. |
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