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Applied Biosystems Expands Line of Labeling Chemistry Reagents to Help Improve Proteomics Research.


iTRAQ[R] Reagents Speed up Discovery of New Biomarker Candidates and Increase Confidence in Results

FOSTER CITY, Calif. -- Applied Biosystems Applied Biosystems, Inc. (formerly NASDAQ: ABIO) is the original name of a pioneer biotechnology company founded in 1981 in Foster City, California, among the Silicon Valley cities of the southern San Francisco Bay Area.  (NYSE NYSE

See: New York Stock Exchange
:ABI Abi (ā`bī) [short for Abijah], in the Bible, King Hezekiah's mother.


(Application Binary Interface) A specification for a specific hardware platform combined with the operating system.
), an Applera Corporation business, today announced an expansion of its line of labeling chemistry reagents used for proteomics research in academic and biopharmaceutical laboratories. The new 8plex version of Applied Biosystems' iTRAQ[R] reagents is designed to double the existing capacity for discovering proteins and comparing protein levels between biological samples that support biomarker discovery Biomarker discovery is the process by which biomarkers are discovered. It is a medical term.

Many commonly used blood tests in medicine are biomarkers. The way that these tests have been found can be seen as biomarker discovery.
. Among the organizations that are using these reagents as part of an early access program are Biogen Idec Biogen Idec, Inc. (NASDAQ: BIIB) is a biotechnology company specializing in drugs for neurological disorders, autoimmune disorders and cancer. The company was formed in 2003 by the merger of Cambridge, Massachusetts-based Biogen and San Diego, California-based Idec  and BG Medicine.

The increased capacity enabled by the new iTRAQ reagents gives researchers the ability to obtain higher throughput and more efficiency in conducting their biomarker discovery than label-free methods or other approaches using reagents with more limited multiplexing multiplexing, in communication, technique whereby two or more independent messages, or information-bearing signals, are carried by a single common medium, or channel.  capacity. The discovery of biomarkers to better understand diseases requires large numbers of sample sets on precise experimental systems. With the new reagents for simultaneous comparison or multiplexing of samples, experiments that might otherwise take months with other methods can be completed with better accuracy in a matter of days or weeks.

The new reagents are intended to make the process of biomarker discovery more productive and to increase the scale of experiments conducted by research laboratories. For instance, researchers at Biogen Idec are engaged in biomarker research from early drug development research to the clinical stage of development. The iTRAQ reagents enabled the researchers to quantify thousands of proteins from as many as eight different samples at the same time. The new reagents also helped Biogen Idec conduct more effective tests to quantify low abundant proteins in complex mixtures, providing a better understanding of the biology.

"Accuracy of quantitation is extremely important as we proceed through our workflow of biomarker discovery, verification and validation Verification and Validation (V&V) is the process of checking that a product, service, or system meets specifications and that it fulfills its intended purpose. These are critical components of a quality management system such as ISO 9000. ," said Jing jing (jing) [Chinese] one of the basic substances that according to traditional Chinese medicine pervade the body, usually translated as "essence"; the body reserves or constitutional makeup, replenished by food and rest, that supports  Wei, a senior scientist in the drug discovery department at Biogen Idec. "The 8plex iTRAQ reagent reagent /re·a·gent/ (re-a´jent) a substance used to produce a chemical reaction so as to detect, measure, produce, etc., other substances.

re·a·gent
n.
 is an important addition to our existing platform, significantly improving throughput and quantitation to generate high-confidence biomarker candidates. It speeds up the discovery process, which allows us to move forward more quickly to validation with potential use in the clinic."

Another organization taking advantage of the increased efficiency is BG Medicine, which has been successfully using iTRAQ reagents for three years in its quantitative proteomics The aim of quantitative proteomics is to obtain quantitative information about all proteins in a sample. Rather than just providing lists of proteins identified in a certain sample, quantitative proteomics yields information about differences between samples.  efforts to discover biomarkers of drug efficacy, adverse drug effects and disease burdens through analyzing large numbers of patient samples. BG Medicine is now transitioning to the new 8plex version of iTRAQ reagents to increase the throughput of its data production pipeline.

"Large-scale biomarker studies are crucial for accelerating the fulfillment of the promise of proteomics to gain invaluable insight into how diseases emerge, progress and could potentially be treated in the future," said Peter Juhasz, vice president of bioanalytical technologies at BG Medicine. "Now having twice the multiplexing capacity with 8plex gives us an opportunity to improve biomarker study designs for more precise quantitation while saving costs in project execution."

Applied Biosystems is a global leader in the development and commercialization of instrument-based systems, consumables, software, and services for the life science market, including proteomics research. In order to obtain the relative and absolute quantitation of the proteins needed for this research, iTRAQ reagents use chemical tags to label each sample in an experiment. These labeled samples are run through a mass spectrometry mass spectrometry
 or mass spectroscopy

Analytic technique by which chemical substances are identified by sorting gaseous ions by mass using electric and magnetic fields.
 instrument for bioanalytical analysis to first identify proteins and then gauge the protein expression of diseased and control samples. The original 4plex version of iTRAQ reagents has been highlighted in more than 100 peer-reviewed articles in scientific journals. With the introduction of 8plex reagents, researchers can efficiently expand their quantitative proteomic experiments to study eight samples simultaneously within a single experiment.

"Academic and biopharmaceutical researchers have the opportunity to build upon the success of biomarker discovery research by improving the way they conduct comparative proteomic experiments going forward," said Charles Purtell, senior director for Applied Biosystems' consumables business within the proteomics and small molecule division. "Applied Biosystems is delivering new tools for proteomics researchers to identify and quantify more proteins of interest with improved statistical confidence and more quickly than existing approaches."

For more information about the complete line of iTRAQ reagents, including the new 8plex version, please visit www.appliedbiosystems.com/massspectrometry

About Applera Corporation and Applied Biosystems

Applera Corporation consists of two operating groups. Applied Biosystems serves the life science industry and research community by developing and marketing instrument-based systems, consumables, software, and services. Customers use these tools to analyze nucleic acids Nucleic acids
The cellular molecules DNA and RNA that act as coded instructions for the production of proteins and are copied for transmission of inherited traits.
 (DNA DNA: see nucleic acid.
DNA
 or deoxyribonucleic acid

One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes.
 and RNA RNA: see nucleic acid.
RNA
 in full ribonucleic acid

One of the two main types of nucleic acid (the other being DNA), which functions in cellular protein synthesis in all living cells and replaces DNA as the carrier of genetic
), small molecules, and proteins to make scientific discoveries and develop new pharmaceuticals. Applied Biosystems' products also serve the needs of some markets outside of life science research, which we refer to as "applied markets," such as the fields of: human identity testing (forensic and paternity testing paternity testing

see parentage testing.
); biosecurity, which refers to products needed in response to the threat of biological terrorism Noun 1. biological terrorism - terrorism using the weapons of biological warfare
bioterrorism

act of terrorism, terrorism, terrorist act - the calculated use of violence (or the threat of violence) against civilians in order to attain goals that are
 and other malicious, accidental, and natural biological dangers; and quality and safety testing, such as testing required for food and pharmaceutical manufacturing. Applied Biosystems is headquartered in Foster City, CA, and reported sales of approximately $2.1 billion during fiscal 2007. The Celera Group is a diagnostics business delivering personalized disease management through a combination of products and services incorporating proprietary discoveries. Berkeley HeartLab, a subsidiary of Celera, offers services to predict cardiovascular disease Cardiovascular disease
Disease that affects the heart and blood vessels.

Mentioned in: Lipoproteins Test

cardiovascular disease 
 risk and optimize patient management. Celera also commercializes a wide range of molecular diagnostic products through its strategic alliance with Abbott and has licensed other relevant diagnostic technologies developed to provide personalized disease management in cancer and liver diseases. Information about Applera Corporation, including reports and other information filed by the company with the Securities and Exchange Commission, is available at http://www.applera.com, or by telephoning 800.762.6923. Information about Applied Biosystems is available at http://www.appliedbiosystems.com. All information in this press release is as of the date of the release, and Applera does not undertake any duty to update this information unless required by law.

Applied Biosystems Forward Looking Statements

Certain statements in this press release are forward-looking. These may be identified by the use of forward-looking words or phrases such as "should," "expect," and "planned," among others. These forward-looking statements are based on Applera Corporation's current expectations. The Private Securities Litigation Reform Act The Private Securities Litigation Reform Act of 1995 (PSLRA) implemented several significant substantive changes affecting certain cases brought under the federal securities laws, including changes related to pleading, discovery, liability, class representation and awards fees and  of 1995 provides a "safe harbor Safe Harbor

1. A legal provision to reduce or eliminate liability as long as good faith is demonstrated.

2. A form of shark repellent implemented by a target company acquiring a business that is so poorly regulated that the target itself is less attractive.
" for such forward-looking statements. In order to comply with the terms of the safe harbor, Applera Corporation notes that a variety of factors could cause actual results and experience to differ materially from the anticipated results or other expectations expressed in such forward-looking statements. These factors include but are not limited to: (1) rapidly changing technology and dependence on the development and customer acceptance of new products; (2) sales dependent on customers' capital spending capital spending

Spending for long-term assets such as factories, equipment, machinery, and buildings that permits the production of more goods and services in future years.
 policies; and (3) other factors that might be described from time to time in Applera Corporation's filings with the Securities and Exchange Commission. All information in this press release is as of the date of the release, and Applera does not undertake any duty to update this information, including any forward-looking statements, unless required by law.

(c) Copyright 2008. Applied Biosystems, AB (Design), Applera, Celera and iTRAQ are registered trademarks of Applera Corporation or its subsidiaries in the US and/or certain other countries. Applera Corporation. All rights reserved.
COPYRIGHT 2008 Business Wire
No portion of this article can be reproduced without the express written permission from the copyright holder.
Copyright 2008, Gale Group. All rights reserved.

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Date:Feb 6, 2008
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