Antibiotic resistance patterns of bacterial isolates from blood in San Francisco County, California, 1996-1999. (Research).Countywide antibiotic resistance antibiotic resistance, n the ability of certain strains of microorganisms to develop resistance to antibiotics. antibiotic resistance patterns may provide additional information from that obtained from national sampling or individual hospitals. We reviewed susceptibility patterns of selected bacterial strains isolated from blood in San Francisco San Francisco (săn frănsĭs`kō), city (1990 pop. 723,959), coextensive with San Francisco co., W Calif., on the tip of a peninsula between the Pacific Ocean and San Francisco Bay, which are connected by the strait known as the Golden County from January 1996 to March 1999. We found substantial hospital-to-hospital variability in proportional resistance to antibiotics in multiple organisms. This variability was not correlated with hospital indices such as number of intensive care unit or total beds, annual admissions, or average length of stay. We also found a significant increase in methicillin-resistant Staphylococcus aureus methicillin-resistant Staphylococcus aureus Methicillin-aminoglycoside resistant Staphylococcus aureus, MRSA An organism with multiple antibiotic resistances–eg, aminoglycosides, chloramphenicol, clindamycin, erythromycin, rifampin, tetracycline, , vancomycin-resistant Enterococcus vancomycin-resistant enterococcus Infectious disease An enterococcus, primarily Enterococcus faecium, resistant to most antibiotics, including aminoglycosides and vancomycin, once a 'last-resort' agent; VRE is primarily nosocomial, in long , and proportional resistance to multiple antipseudomonal antibiotics. We describe the utility, difficulties, and limitations of countywide surveillance. ********** Many national sampling and hospital surveillance systems exist to monitor antimicrobial resistance patterns in bacteria (1-4). Previously, organisms resistant to multiple antibiotics were largely confined to hospital settings and were typically described through studies involving single hospitals or intensive care units (ICUs). These single-hospital studies often reported substantially different resistance patterns from one another (5-7). National surveillance systems provided key data on large-scale resistance trends, but, similarly, continued to show marked variability in proportional resistance among participating hospitals (1-3,8,9). We hypothesized that countywide surveillance data would not only provide information on changes in bacterial antimicrobial resistance but also potentially identify hospital demographic data to account for interhospital variability in resistance patterns. Additionally, countywide surveillance should provide greater insight into the relationship between single hospitals and their neighboring communities as data accumulate to support the spread of resistant organisms from the hospital into the community and vice versa VICE VERSA. On the contrary; on opposite sides. . Morgan et al. (8) reported data from Wales Wales, Welsh Cymru, western peninsula and political division (principality) of Great Britain (1991 pop. 2,798,200), 8,016 sq mi (20,761 sq km), west of England; politically united with England since 1536. The capital is Cardiff. that 66% of patients colonized Colonized This occurs when a microorganism is found on or in a person without causing a disease. Mentioned in: Isolation or infected with methicillin-resistant Staphylococcus aureus (MRSA MRSA Methicillin-resistant Staphylococcus aureus. See MARSA. ) are being discharged to their homes, leading to risks of intrafamilial transmission (10-12). Goetz et al. (6) showed that health-care workers similarly bring resistant organisms home. Additionally, outpatient dialysis units, rehabilitation centers, and outpatient intravascular intravascular /in·tra·vas·cu·lar/ (in?trah-vas´ku-lar) within a vessel. in·tra·vas·cu·lar adj. Within one or more blood vessels. devices have been shown to be reservoirs of colonization with MRSA and vancomycin-resistant Enterococcus (VRE VRE vancomycin-resistant enterococcus. VRE Vancomycin-resistent enterococcus, see there ) in many patients in the community (13-16). MRSA and VRE colonization and infection in the absence of hospital risk factors are also being increasingly recognized in the community (17-22). Day-care centers and isolated communities may play a notable role (20,23). Patients colonized from these community reservoirs can subsequently cause hospital outbreaks after admission (24). As hospital and community colonization and infection begin to exert pressure on one another, single-hospital surveillance data may become less useful in isolation. Countywide surveillance may provide more insight into the sources and extent of outbreaks and prompt focused investigations into the spread and containment of resistant organisms. We conducted an observational study In statistics, the goal of an observational study is to draw inferences about the possible effect of a treatment on subjects, where the assignment of subjects into a treated group versus a control group is outside the control of the investigator. to evaluate the changes in antibiotic resistance in selected bacteria isolated from blood in San Francisco County, California, to determine if these changes were associated with specific hospital demographics and to define the utility, limitations, and potential areas of improvement in a county-based surveillance system. Methods All bacterial strains recovered from blood were identified from available microbiology department records of all 13 hospitals in San Francisco County from January 1, 1996, to March 31, 1999. For three hospitals (4,5,9), data from 1996 had been purged and were no longer available. For each isolate, data were collected on organism type and susceptibility pattern. Information was also obtained on the ward, age, and gender of the patient. Only the first positive blood culture of a given species was included for a single patient throughout the study period, regardless of susceptibility pattern. Cultures positive for S. epidermidis were considered representative of clinical bacteremia bacteremia: see septicemia. bacteremia Presence of bacteria in the blood. Short-term bacteremia follows dental or surgical procedures, especially if local infection or very high-risk surgery releases bacteria from isolated sites. if at least two isolates with identical susceptibility patterns were obtained from a minimum of two separate sets of blood cultures. Each such set was considered a single bacteremic bac·te·re·mi·a n. The presence of bacteria in the blood. bac te·re event. All other cultures positive for S.
epidermidis were excluded, as were other common skin contaminants (e.g.,
Propionibacterium acnes Propionibacterium acnes is a relatively slow growing, (typically) aerotolerant anaerobic gram positive bacterium that is linked to the skin condition acne; it can also cause chronic blepharitis and endophthalmitis, the latter particularly following intraocular surgery. , Peptostreptococcus, Corynebacterium Corynebacterium /Co·ry·ne·bac·te·ri·um/ (-bak-ter´e-um) a genus of bacteria including C. ac´nes, a species present in acne lesions, C. diphthe´riae, the etiologic agent of diphtheria, C. ).All but one hospital used automated systems (VITEK [bioMerieux Vitek, Hazelwood, MO] or Microscan [Baxter Laboratories, West Sacramento, CA]) for the susceptibility testing of gram-negative bacteria. All hospitals used Kirby-Bauer disk-diffusion techniques for the evaluation of susceptibility profiles for Streptococcus pneumoniae Streptococcus pneu·mo·ni·ae n. Pneumococcus. Streptococcus pneumoniae Microbiology A pathogenic streptococcus with 90 serotypes associated with pneumonia, bacteremia, meningitis Transmission Person to person Incidence and other streptococcal streptococcal /strep·to·coc·cal/ (-kok´al) pertaining to or caused by a streptococcus. Streptococcal (Streptococcus) Pertaining to any of the Streptococcus bacteria. species according to according to prep. 1. As stated or indicated by; on the authority of: according to historians. 2. In keeping with: according to instructions. 3. National Committee for Clinical Laboratory Standards (NCCLS NCCLS National Committee for Clinical Laboratory Standards ) guidelines. Kirby-Bauer results were supplemented by E-testing. One hospital (12) performed all susceptibility testing using Kirby-Bauer disk-diffusion techniques. All microbiology laboratories used MIC breakpoints established by the NCCLS. The annual number of blood culture sets processed by each microbiology laboratory was also obtained. Data from five hospitals were obtained as text files or Microsoft Excel (tool) Microsoft Excel - A spreadsheet program from Microsoft, part of their Microsoft Office suite of productivity tools for Microsoft Windows and Macintosh. Excel is probably the most widely used spreadsheet in the world. Latest version: Excel 97, as of 1997-01-14. (Redmond, WA) files and subsequently imported into a Microsoft Access A database program for Windows, available separately or included in the Microsoft Office suite. Access is programmable using Visual Basic for Applications (VBA). Access can read Paradox, dBASE and Btrieve files, and using ODBC, Microsoft SQL Server, SYBASE SQL Server and Oracle data. (Redmond, WA) database. Data from four hospitals were obtained in printed form, scanned as image files, converted into text files using Text-Bridge Pro 98 (ScanSofi Inc., Peabody, MA), and imported into the database. All scanned entries were verified for accuracy. Data from the remaining four hospitals were obtained from stored index cards, entered manually into the database, and verified for accurate entry. We also obtained bed size and census data for all 13 hospitals in San Francisco County. Total hospital admissions were tabulated from quarterly administrative records from 1996 through 1998. For each hospital, average length of hospital stay was obtained from publicly available resources (25). Data Analyses The number of isolates for each species was tabulated for each year and for the entire study period. Only species for which the total number of countywide isolates exceeded 100 during the study period were further evaluated. For each organism, proportional annual resistance to an antibiotic was calculated as the yearly number of organisms with intermediate or full resistance divided by the total number of organisms isolated in San Francisco County that year. Because of laboratory variability in susceptibility testing, not all isolates are included in descriptions of proportional resistance. Means were calculated from the annual countywide percentages in each of the 4 years studied. Percent annual resistance was determined for any antibiotic tested in [greater than or equal to] 50 isolates and analyzed for increasing or decreasing annual trend from 1996 through 1999. Data for 1999 were based on the first quarter culture results. Strains with full or intermediate resistance to an antibiotic were counted as resistant in all statistical analyses. Organisms demonstrating increasing or decreasing annual resistance to a given antibiotic (p<0.05) were further described by calculating mean proportional (Math.) the square root of their product. See also: Mean resistance over the study period according to categories of hospital, ward, patient age (in 10-year intervals), and patient gender. Spearman spear·man n. A man, especially a soldier, armed with a spear. rank tests were used to determine any correlation between hospital indices (beds, annual admissions, average length of stay) and proportional antibiotic resistance. P values were not adjusted for the effect of multiple comparisons. P values remained unchanged with respect to alpha level (0.05) after removal of the three hospitals missing data from 1996. Results A total of 11,573 bacterial strains were recovered from blood cultures by the 13 hospitals. After excluding duplicate cultures, we had 8,072 remaining clinical isolates. Information on hospital size, census, and blood culture volume is provided in Table I. Despite being distinct and nonadjoining, hospitals 4 and 5 are reported together because of unified microbiology and administrative centers. Hospital 13 is a skilled nursing facility skilled nursing facility n. Abbr. SNF An establishment that houses chronically ill, usually elderly patients, and provides long-term nursing care, rehabilitation, and other services. . On average, 74,600 sets of blood cultures were processed each year in San Francisco County; 9.9% of these were positive for bacterial species. Of the 8,072 isolates, Staphylococcus aureus Staphylococcus au·re·us n. A bacterium that causes furunculosis, pyemia, osteomyelitis, suppuration of wounds, and food poisoning. Staphylococcus aureus Staphylococcus pyogenes (1,858), Escherichia coli Escherichia coli (ĕsh'ərĭk`ēə kō`lī), common bacterium that normally inhabits the intestinal tracts of humans and animals, but can cause infection in other parts of the body, especially the urinary tract. (1,634), and S. pneumoniae (725) were the most common organisms. The numbers of S. aureus The aureus (pl. aurei) was a gold coin of ancient Rome valued at 25 silver denarii. The aureus was regularly issued from the 1st century BC to the beginning of the 4th century AD, when it was replaced by the solidus. , Enterococcus faecalis Enterococcus faecalis is a Gram-positive commensal bacterium inhabiting the gastrointestinal tracts of humans and other mammals.[1] Like other species in the genus Enterococcus, E. , Bacteroides fragilis Bacteroides frag·i·lis n. A bacterium that is one of the predominant microorganisms in the lower intestinal tract of humans. Bacteroides fragilis , E. coli E. coli: see Escherichia coli. E. coli in full Escherichia coli Species of bacterium that inhabits the stomach and intestines. E. coli can be transmitted by water, milk, food, or flies and other insects. , and Serratia marcescens Serratia marcescens Microbiology The type-species of the gram-negative Serratia, widely present in the environment, and occasional cause of hospital-acquired infections Asssociations Contaminated fluids, equipment, cleaning solutions, hands, ↓ increased annually during the 4-year period. Fourteen species had >100 isolates and were considered for further analysis (Figure 1). These 14 organisms accounted for 85% to 86% of all yearly totals. [FIGURE 1 OMITTED] Gram-Positive Organisms The proportion of MRSA and E. faecium resistant to vancomycin vancomycin (văn'kōmī`sĭn), antibiotic resembling penicillin in the way it acts. It is derived from the bacterium Streptomyces orientalis, which was isolated from soil of India and Indonesia. (VRE faecium) increased annually (Figure 2). Countywide, the proportion of MRSA isolates rose from 18.1% (1996) to 26.1% (1999) (p<0.001). In total, MRSA constituted 22.4% of all S. aureus isolates, including 19.6% of emergency department isolates and 15.9% of isolates in the outpatient setting (Table 2). Methicillin methicillin /meth·i·cil·lin/ (meth?i-sil´in) a semisynthetic penicillin highly resistant to inactivation by penicillinase; used as the sodium salt. meth·i·cil·lin n. resistance in S. aureus isolates was <15% in patients <20 years of age and >20% in all other age groups, with the exception of 30- to 39-year-olds (17.6%) (Table 3). Proportional resistance did not vary by patient gender. [FIGURE 2 OMITTED] During the study period, 124 VRE isolates and 157 vancomycin-sensitive Enterococcus enterococcus /en·tero·coc·cus/ (en?ter-o-kok´us) pl. enterococ´ci an organism belonging to the genus Enterococcus. Enterococcus /En·tero·coc·cus/ ( isolates were unspeciated. Among the speciated E. faecium isolates, the percentage resistant to vancomycin rose from 0% to 66.7% in the 4-year period (p<0.001). VRE faecium was most frequently isolated from inpatient adult wards, but six isolates were cultured from emergency department and outpatient settings. Over 66% of E. faecium isolates from skilled nursing facilities were resistant to vancomycin (Table 2). VRE isolates exceeded 40% in all age groups with the exception of [less than or equal to] 10-year-olds (22.2%) (Table 3). Of note, VRE faecium isolates showed increasing annual resistance to doxycycline doxycycline /doxy·cy·cline/ (dok?se-si´klen) a semisynthetic broad-spectrum tetracycline antibiotic, active against a wide range of gram-positive and gram-negative organisms; used also as d. calcium and d. hyclate. (from 30% to 68%; p = 0.02). Even after the skilled nursing facility (hospital 13) was excluded, the percentage of MRSA and VRE faecium isolates varied substantially among individual hospitals (MRSA 12.5% to 37.5%, VRE faecium 12.5% to 80.0%). There was no correlation between proportional resistance and number of ICU ICU intensive care unit. ICU abbr. intensive care unit ICU see intensive care unit. ICU or total hospital beds, number of annual admissions, or average length of ICU or total hospital stay. However, for both organisms, there was increasing proportional resistance among adult wards in the following order: outpatient wards, emergency department, medical and surgical floors, medical and surgical ICUs, and skilled nursing facility wards. Notably, a substantial number of VRE and MRSA isolates were cultured within the first 24 to 48 hours of hospital admission (Figure 3). [FIGURE 3 OMITTED] Of the 678 isolates of S. pneumoniae, 13.6% were resistant to penicillin. Proportional resistance increased from 10.8% (21 isolates) in 1996 to 14.6% (27 isolates) in 1998, but this increase was not statistically significant. Proportional resistance was highest at the extremes of age (16.4% in patients >70 years of age and 19.3% in patients <10 years of age (Table 3). Gram-Negative Organisms Countywide, E. coli (1,634 isolates), Klebsiella pneumoniae Klebsiella pneu·mo·ni·ae n. Friedlander's bacillus. (428 isolates), and Pseudomonas aeruginosa Pseudomonas aeruginosa A normal soil inhabitant and human saprophyte that may contaminate various solutions in a hospital, causing opportunistic infection in weakened Pts Clinical Infective endocarditis in IVDAs, RTIs, UTIs, bacteremia, meningitis, 'malignant' (260 isolates) were the most frequently isolated gram-negative bacilli bacilli /ba·cil·li/ (bah-sil´i) plural of bacillus. bacilli see bacillus. . This was true in all inpatient and outpatient wards with the exception of skilled nursing facilities, where Proteus mirabilis Proteus mirabilis Microbiology A gram-negative pathogen linked to UTIs, wound infections Habitat P mirabilis may be found in water, soil, feces was the most common gram-negative isolate after E. coli. Proportional resistance by ward for selective gram-negative organisms is shown in Table 4. Among E. coli isolates, resistance to trimethoprim-sulfamethoxazole averaged 28% and resistance to ciprofloxacin ciprofloxacin /cip·ro·flox·a·cin/ (sip?ro-flok´sah-sin) a synthetic antibacterial effective against many gram-positive and gram-negative bacteria; used as the hydrochloride salt. cip·ro·flox·a·cin n. averaged 3%. There was no resistance to fluoroquinolones among E. coli isolates from pediatric pediatric /pe·di·at·ric/ (pe?de-at´rik) pertaining to the health of children. pe·di·at·ric adj. Of or relating to pediatrics. wards. Increasing annual resistance to ticarcillin-clavulanate was seen in both E. coli (6% to 16%, p=0.03) and K. pneumoniae (0% to 18%, p= 0.007) isolates. P. aeruginosa isolates showed increasing annual countywide resistance to ciprofloxacin (7% to 21%, p=0.005), ceftazidime (6% to 16%, p=0.02), and imipenem (2% to 18%, p=0.004) (Figure 4). Resistance to each of these three antibiotics exceeded 10% in adult ICU and adult medical and surgical wards. In fact, in these settings, ciprofloxacin resistance approached 20% countywide. No isolates resistant to ciprofloxacin were cultured from pediatric wards (Table 4). Resistance to gentamicin gentamicin /gen·ta·mi·cin/ (jen?tah-mi´sin) an aminoglycoside antibiotic complex isolated from bacteria of the genus Micromonospora, (15%) and piperacillin-tazobactam (12%) also increased but was not statistically significant. [FIGURE 4 OMITTED] There were 182 E. cloacae and 116 S. marcescens isolates from January 1996 through March 1999. Ciprofloxacin resistance averaged 4% among E. cloacae isolates and 6% among S. marcescens isolates. S. marcescens isolates also showed increasing annual proportional resistance to gentamicin (0% to 14%, p=0.02) and piperacillin (4% to 29%, p=0.01). Resistance to ceftazidime, which can be predictive of inducible and extended-spectrum-beta-lactamases, was found in the following overall mean proportions in the study period: E. coli (1%), P. mirabilis (1%), K. pneumoniae (1%), S. marcescens (8%), P. aeruginosa (13%), and E. cloacae (39%). Only P. aeruginosa isolates demonstrated an increasing linear annual trend (p = 0.02). Discussion San Francisco County has a population of approximately 735,000 and covers 46.7 square miles (26). It comprises multiple racial and ethnic groups (black 10.9%, Hispanic 13.9%, Asian 29.1%, and Native American 0.5%) and is served by 13 hospitals. We have shown that county surveillance of bacterial resistance is a useful addition to local hospital surveillance, particularly as antibiotic-resistant bacteria increasingly spread from hospital to hospital and into the community at large. Across the county, annual proportions of MRSA and VRE isolates significantly increased over the 4-year period. Pseudomonal strains resistant to fluoroquinolones, ceftazidime, or imipenem also increased annually. These data allow us to distinguish countywide outbreaks and trends from single-hospital changes in resistance patterns, and enable infection control efforts to expand or narrow to the appropriate scale. With awareness programs, county surveillance can broaden physicians' knowledge of their hospital's effects on the community, as well as the effects of neighboring hospitals on resistance patterns in their particular hospital. Additionally, county surveillance that includes subcategorization of isolates by ward is invaluable in identifying patients at high risk and locations for transmission of resistant bacteria. Not surprisingly, we report our highest proportion of MRSA and VRE isolates from ICU and nursing home units. Nevertheless, ward variability across hospitals was substantial. Large interhospital differences can lead to further study of ward practices that foster or abate abate v. to do away with a problem, such as a public or private nuisance or some structure built contrary to public policy. This can include dikes which illegally direct water onto a neighbors property, high volume noise from a rock band or a factory, an improvement transmission. Awareness can prompt hospital infection control personnel to ensure well-described preventive measures such as swabbing and isolation precautions for VRE and MRSA in ICU settings (27-30) and nasopharyngeal nasopharyngeal pertaining to the nasal and pharyngeal cavities. nasopharyngeal meatus see nasopharyngeal meatus. nasopharyngeal spasm see reverse sneeze. swabbing and eradication of MRSA in hemodialysis wards (1,31). We also identify several MRSA and VRE isolates from outpatient and emergency department settings. Whether or not these represent true community-acquired strains or strains from patients recently released from hospital settings, they suggest that highly resistant bacterial outpatient infections and infectivity are increasing, a result consistent with recent studies (19,21,22). We also evaluated whether the wide variability in the proportions of resistant bacteria among San Francisco hospitals was linked to hospital indices. In contrast to previous nationwide sampling studies, none of this variability was correlated with the number of hospital ICU beds (3), total beds (1,2,31), annual admissions (32), or annual mean length of stay. This may be due to our small number of hospitals, leading to limited power to detect such correlations. Alternatively, local community and hospital factors (e.g., increasing care of moderately ill patients at home [8], increasing home intravenous antibiotics [15], active transfer of patients between hospitals [33,34], and community-acquired resistant organisms) may now be diminishing the effect of hospital size, census and length of stay on proportional resistance. There are many additional advantages to a countywide surveillance system for antimicrobial resistance. First, it can help reassess therapy. The 28% trimethoprim-sulfamethoxazole resistance in E. coli raises questions about the optimal empiric treatment of urinary tract infections urinary tract infection (UTI), n infection in one or more of the structures that make up the urinary system. Occurs more often in women and is most commonly caused by bacteria. in patients at high risk for bacteremia or urosepsis. Likewise, distinguishing resistance in the outpatient versus inpatient setting can guide empiric therapy Empiric therapy is a medical term referring to the initiation of treatment prior to determination of a firm diagnosis. It is most often used when antibiotics are given to a person before the specific microorganism causing an infection is known. in the appropriate setting. Second, in studying a larger populace, we can obtain sufficient numbers to study uncommon organisms. Similarly, countywide surveillance provides a means to identify and confirm novel resistant pathogens. In our study, one MRSA isolate with intermediate resistance to vancomycin and three vancomycin-resistant S. epidermidis isolates were noted in microbiology laboratory reports. As with the organisms recently reported in the United States United States, officially United States of America, republic (2005 est. pop. 295,734,000), 3,539,227 sq mi (9,166,598 sq km), North America. The United States is the world's third largest country in population and the fourth largest country in area. (35-37), these were reported from nontertiary hospitals. Nevertheless, our reports are unconfirmed and likely represent laboratory error. However, if surveillance could be expedited to real-time use, such reports could be investigated and confirmed rather than dismissed. At its worst, this suggests that highly resistant organisms may be escaping deserved attention and reaction. Third, countywide surveillance engenders further hypotheses and research regarding interhospital and community transmission of resistant organisms. For example, our finding that 20% of emergency department S. aureus isolates are methicillin-resistant provides a flag to further study which county areas have the highest percentages of resistant S. aureus and which risk factors are involved (e.g., recent hospital admission [21,22], associated hemodialysis centers [8,38] or nursing homes [21,22], or intravenous drug use intravenous drug use Intravenous drug abuse The habitual IV injection of drugs of abuse Epidemiology In the US ± 2.5 million–population ± 235 million have used IVDs Infections Pyogenic–eg, endocarditis, pneumonia, sepsis Common agents [39]). The finding that P. mirabilis bacteremia is more common in nursing home wards raises questions about preventing urinary tract infections in that setting. The relative lack of fluoroquinolone fluoroquinolone /flu·o·ro·quin·o·lone/ (-kwin´o-lon) any of a subgroup of fluorine-substituted quinolones, having a broader spectrum of activity than nalidixic acid. fluor·o·quin·o·lone n. resistance in pediatric gram-negative isolates is likely due to the avoidance of fluoroquinolones in children because of potential detrimental cartilage effects. The study of fluoroquinolone-resistant organisms during the transition years from pediatric to adult medicine may provide insight into the quantity and duration of antibiotic needed to produce selection pressure, as well as the speed and durability of emerging resistance. Our surveillance method had several limitations. Chart review would have been an invaluable addition in distinguishing between community-acquired and recent hospital or nursing home acquisition of resistant organisms. Second, we did not collect or confirm isolates; thus, although our results reflect microbiologic data actually presented to ordering physicians, they are subject to laboratory differences in speciation speciation Formation of new and distinct species, whereby a single evolutionary line splits into two or more genetically independent ones. One of the fundamental processes of evolution, speciation may occur in many ways. and susceptibility determination. Notably, not all organisms were fully speciated or tested against the antibiotics of interest. Fortunately, this occurred in a small proportion of bacteria. Third, we do not provide information on antibiotic use, which is known to be a major determinant of bacterial antibiotic resistance. Fourth, countywide trends can be driven by trends seen in the largest hospitals, particularly since smaller hospitals often lack sufficient numbers of isolates to make statistical analyses meaningful. This was notable for our data on proportional increases in VRE, which were largely driven by three hospitals. On the contrary, MRSA trends were not limited to a few hospitals, nor were they limited to the largest hospitals in the county. No hospital showed a significant decreasing trend in the proportion of MRSA isolates. Areas for improvement include methods to computerize com·put·er·ize tr.v. com·put·er·ized, com·put·er·iz·ing, com·put·er·iz·es 1. To furnish with a computer or computer system. 2. To enter, process, or store (information) in a computer or system of computers. microbiologic data storage in a universal format. This would expedite surveillance and allow real-time collection and identification of unusually resistant organisms, as well as provide sentinel data regarding countywide outbreaks. In addition, linking of patient information to microbiologic data would have expedited acquisition of sex, gender, and ward information. Furthermore, despite NCCLS guidelines, a fair amount of variability exists in laboratory practices and susceptibility panels. Further standardization of these practices would help ensure the reliability of merging data among hospitals. Without a doubt, the greatest utility of countywide surveillance lies in its ability to ask screening questions that prompt a more thorough investigation of specific hospitals, wards, or age groups at particular risk for acquiring or transmitting highly resistant organisms. We have shown how several such questions were raised by our surveillance of bacteremias in San Francisco County and described its many advantages. We have further defined our limitations and difficulties in performing such surveillance, in the hope that this will be helpful to further similar surveillance efforts.
Table 1. Hospital size and census, San Francisco County,
1996 to 1999
No.
of
No. of ICU (a) Yearly
Hospital beds beds admissions
1 482 47 20,340
2 371 32 14,305
3 304 30 18,843
4,5 (b) 302 31 10,893
6 284 12 5,939
7 253 15 7,982
8 240 15 9,887
9 221 18 6,139
10 209 19 6,655
11 209 8 3,293
12 59 7 2,260
13 (c) 1,280 0 1,211
Average Blood % +
length of stay culture blood
Hospital (days) sets/year cultures
1 6.6 16,325 11
2 3.8 9,108 9
3 7.5 12,929 13
4,5 (b) 5.8 10,800 6
6 8.3 3,580 12
7 7.3 4,865 9
8 7.6 5,475 6
9 6.6 2,582 11
10 6.7 4,974 14
11 9.3 2,515 10
12 5.4 1,464 13
13 (c) 351.2 N/A --
(a) ICU beds includes medical, surgical, cardiac, and neurologic
adult critical care.
(b) Administration, microbiology laboratories merged. Average
number per hospital given.
(c) Skilled nursing facility.
Table 2. Proportional (a) resistance of highly resistant organisms
by ward, (b) San Francisco County, 1996 to 1999
Methicillin- Vancomycin- Penicillin-
resistant resistant resistant
Staphylococcus Enterococcus Streptococcus
Ward aureus faecium pneumoniae
Skilled nursing
facility 38.0% (100) 66.7% (6) 8.3% (12)
Med/surg ICU 27.2% (298) 50.0% (58) 13.3% (75)
Pediatric ICU 30.3% (33) 25.0% (4) 0% (2)
Med/surg floors 21.8% (709) 47.8% (92) 12.0% (166)
Pediatric floors 9.1% (33) 60.0% (5) 40.0% (10)
Emergency
department 19.6% (424) 22.7% (22) 9.5% (305)
Outpatient 15.9% (171) 12.5% (8) 23.6% (72)
Other/unknown 28.6% (7) 100% (1) 32.4% (34)
Total 22.4% (1,782) 44.9% (196) 13.6 (678)
(a) Proportional resistance refers to the proportion of isolates
of that species that is resistant to the indicated antibiotic.
(b) Total number of species isolates given in parentheses.
Percentages for small numbers of total isolates should be
cautiously interpreted.
ICU = intensive care unit.
Table 3. Proportional (a) resistance of highly resistant organisms
by age, (b) San Francisco County, 1996 to 1999
Methicillin- Vancomycin- Penicillin-
resistant (%) resistant (%) resistant (%)
Age group Staphylococ- Enterococcus Streptococcus
(years) cus aureus faecium pneumoniae
[less than or 14.3 (98) 22.2 (9) 19.3 (83)
equal to] 10
10-19 8.1 (37) 50.0 (4) 20.0 (5)
20-29 21.7 (83) 50.0 (8) 0 (26)
30-39 17.6 (250) 42.1 (19) 13.4 (142)
40-49 21.8 (353) 41.4 (29) 8.7 (138)
50-59 24.8 (234) 43.8 (32) 11.5 (78)
60-69 29.1 (227) 45.5 (44) 10.2 (49)
70-79 24.8 (258) 55.9 (34) 15.6 (64)
[greater than or 22.8 (237) 41.2 (17) 17.2 (64)
equal to] 80
(a) Proportional resistance refers to the proportion of isolates of
that species that is resistant to the indicated antibiotic.
(b) Total number of species isolates given in parentheses.
Percentages for small numbers of total isolates should be
cautiously interpreted.
Table 4. Proportional resistance of selected gram-negative
organisms by ward, (a) San Francisco County, 1996 to 1999
Escherichia Enterococcus
coli- E. coli- cloacae-
cefazolin ciprofloxacin ceftazidime
Skilled 9.1% (88) 2.2% (92) 50% (6)
nursing facility
Med/surg ICU 8.4% (166) 1.9% (160) 53.4% (43)
Pediatric ICU 18.5%(27) 0%(28) 18.2%(11)
Med/surg floors 8.4% (586) 4.3% (564) 47.2% (53)
Pediatric floors 25.0% (16) 0% (16) 27.3% (11)
Emergency 8.4% (536) 2.6% (549) 32.3% (31)
department
Outpatient 8.6% (117) 1.6% (123) 4.8% (21)
Other/unknown 11.1% (18) 0% (18) 0% (0)
Total 8.8% (1,554) 2.9% (1,550) 38.1% (176)
Pseudomonas
aeruginosa P aeruginosa
-ciprofloxacin -ceftazidime
Skilled 8.3% (12) 25% (12)
nursing facility
Med/surg ICU 21.5% (65) 15.9% (63)
Pediatric ICU 0%(13) 7.7%(13)
Med/surg floors 19.1% (89) 12.5% (88)
Pediatric floors 0% (10) 0% (10)
Emergency 23.5% (34) 5.9% (34)
department
Outpatient 4% (25) 4.0% (25)
Other/unknown 0% (1) 0% (1)
Total 16.5% (249) 11.4% (246)
Serratia
P. aeruginosa marcescens
-imipenem -ceftazidime
Skilled 20.0% (10) 40.0% (5)
nursing facility
Med/surg ICU 11.9% (59) 12.1 (33)
Pediatric ICU 9.1%(11) 0%(11)
Med/surg floors 12.2% (74) 9.5% (21)
Pediatric floors 0% (8) 0% (6)
Emergency 6.7% (30) 0% (17)
department
Outpatient 0% (22) 0% (15)
Other/unknown 0% (1) 0% (0)
Total 9.8% (215) 7.3% (109)
(a) Total number of species isolates given in parentheses.
Percentages for small numbers of total isolates should be
cautiously.
ICU = intensive care unit.
Acknowledgments We thank the following persons for their extensive assistance in our data collection: Lisa Gelling, Gretchen Rothrock, May Ma, Ray Fung, Hiroshi Takahashi Hiroshi Takahashi may refer to:
Financial support for this study was provided by the California Emerging Infections Program, a joint project of the California Department of Health Services Department of Health Services may refer to:
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Infect Control Hosp Epidemiol 1999;20:163-5. (37.) Smith TL, Pearson ML, Wilcox KR, Cruz C, Lancaster MV, Robinson-Dunn B, et al. Emergence of vancomycin resistance in Staphylococcus aureus. Glycopeptide-Intermediate Staphylococcus aureus Working Group. N Engl J Med 1999;340:493-501. (38.) Zimakoff J, Bangsgaard Pederseon F, Bergen L, Baago-Nielsen J, Daldorph B, Espersen F, et al. Staphylococcus aureus carriage and infections among patients in four haemo-and peritoneal-dialysis centers in Denmark. J Hosp Infect 1996;33:289-300. (39.) Saravolatz LD, Markowitz N, Arking L, Pohlod MS, Fisher E, Arbor A. Methicillin-resistant Staphylococcus aureus. Ann Intern Med 1982;96:11-6. Address for correspondence: Susan Huang, 195 Binney Street #2103, Cambridge, MA 02142, USA; fax 617-732-6829; e-mail: sshuang@partners.org Susan S. Huang, * ([dagger]) Brian J. Labus, ([dagger]) ([double dagger double dagger n. A reference mark ( ) used in printing and writing. Also called diesis.Noun 1. ] Michael C. Samuel, ([dagger]) ([double dagger]) Dairian T. Wan, ([dagger]) and Arthur L. Reingold ([dagger]) ([double dagger]) * University of California San Francisco, San Francisco, California “San Francisco” redirects here. For other uses, see San Francisco (disambiguation). The City and County of San Francisco (EN IPA: [sænfrənˈsɪskoʊ] , USA; ([dagger]) California Department of Health Services, San Francisco, California, USA; and ([double dagger]) University of California Berkeley, Berkeley, California, USA At the time of this study, Dr. Huang was a categorical resident in Internal Medicine at the University of California San Francisco Medical Center. She has since completed a Master of Public Health at the Harvard School of Public Health The Harvard School of Public Health is (colloquially, HSPH) is one of the professional graduate schools of Harvard University. Located in Longwood Area of the Boston, Massachusetts neighborhood of Mission Hill, next to Harvard Medical School and Cambridge, Massachusetts, and is pursuing a fellowship in infectious diseases at Brigham & Women's Hospital and Massachusetts General Hospital Massachusetts General Hospital Health care The major teaching hospital for Harvard Medical School, widely regarded as one of the best health care centers in the world , Boston, Massachusetts. Her current research interests are in the field of bacterial antibiotic resistance. |
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