Analysis of chromosomal DNA content in pacific red abalone Haliotis rufescens by fluorescence image analysis.
ABSTRACT The fluorescence fading and chromosome imaging method were used together to analyze chromosomal DNA DNA: see nucleic acid.
or deoxyribonucleic acid
One of two types of nucleic acid (the other is RNA); a complex organic compound found in all living cells and many viruses. It is the chemical substance of genes. contents (haploid haploid /hap·loid/ (hap´loid)
1. having half the number of chromosomes characteristically found in the somatic (diploid) cells of an organism; typical of the gametes of a species whose union restores the diploid number. set) in Pacific red abalone Haliotis rufescens (Archaeogastropoda: Haliotidae). The fluorescence intensity was measured each 1.6 sec in H. rufescens chromosomes (2 n = 36) stained with DAPI DAPI 4',6-Diamidino-2-Phenylindole (double stranded DNA staining)
DAPI Days After Panicle Initiation
DAPI Developer Application Programming Interface . The fluorescence of each chromosomal type was recorded using color digital images of 24 bits. These kind of images allowed converting the RGB (Red Green Blue) The computer's native color space, which is the color system for capturing and displaying images. RGB was derived from our own perception of color because human eyes are sensitive to red, green and blue (see trichromaticity). (true color) images to pseudocolor images to quantify the fluorescence intensity by means of 256 levels of brightness. Algorithms built with MATLAB (MATrix LABoratory) A programming language for technical computing from The MathWorks, Natick, MA (www.mathworks.com). Used for a wide variety of scientific and engineering calculations, especially for automatic control and signal processing, MATLAB runs on Windows, Mac and software were used to determine the area under the curve (fading function). Therefore, estimates of DNA contents in individual chromosome types were obtained. Their DNA contents were related with chromosomal sizes (P < 0.001). The DNA values found showed a range from 0.1106 [+ or -] 0.0045 pg (chromosome # 1) to 0.0890 [+ or -] 0.0060 pg (chromosome # 18). The genome size calculated for H. rufescens by sum of all chromosomal DNA contents was 1.77 [+ or -] 0.005 pg. This study describes an alternative imaging method to analyze the chromosome morphology and chromosomal DNA contents in molluscs, and represents an alternative approach to the lack of cell lines required in flow cytogenetics cytogenetics /cy·to·ge·net·ics/ (-je-net´iks) the branch of genetics devoted to cellular constituents concerned in heredity, i.e. chromosomes. .
KEY WORDS: genome size, chromosome image analysis, fluorescence fading, Haliotis rufescens, abalone abalone (ăbəlō`nē), popular name in the United States for a univalve gastropod mollusk of the genus Haliotis, members of which are also called ear shells, or sea ears, as their shape resembles the human ear.
The Pacific red abalone Haliotis rufescens (Swainson 1822) is a marine gastropod gastropod, member of the class Gastropoda, the largest and most successful class of mollusks (phylum Mollusca), containing over 35,000 living species and 15,000 fossil forms. inhabiting rocky substrates together with kelp along the Pacific coast from Southern Oregon to Northern California in the United States to the Baja California Peninsula in Mexico (Lindberg 1992). Abalones are economically important marine gastropods that reach moderate to high prices in the world market (Oakes & Ponte 1996), and aquaculture aquaculture, the raising and harvesting of fresh- and saltwater plants and animals. The most economically important form of aquaculture is fish farming, an industry that accounts for an ever increasing share of world fisheries production. production of red abalone began during the last decade in Mexico. The whole life cycle is managed under controlled conditions. Because of its economical importance, several studies of ploidy ploidy
Number of sets of chromosomes in the nucleus of a cell. In normal human body cells, chromosomes exist in pairs, a condition called diploidy. During meiosis the cell produces sex cells (gametes), each containing half the normal number of chromosomes, a condition called manipulation have been carried out to enhance the production of different abalone species (Arai & Wilkins 1986, Fujino et al. 1987, Kudo ku·do
n. pl. ku·dos
Usage Problem A praising remark; an accolade or compliment: "Children's book author Virginia Hamilton added another kudo to her prize-laden career" et al. 1991, Zhang et al. 1998, Maldonado et al. 2001). However, the knowledge on abalone cytogenetic cytogenetic /cy·to·ge·net·ic/ (-je-net´ik)
1. pertaining to chromosomes.
2. pertaining to cytogenetics.
pertaining to or originating from the origin and development of the cell. characteristics is sparse.
Modern cytogenetic methods such as chromosome banding and fluorescent in situ hybridization in situ hybridization A method for localizing a sequence of DNA, mRNA, or protein in a cell or tissue; the use of a DNA or RNA probe to detect a cDNA sequence in chromosome spreads or in interphase nuclei or an RNA sequence of cloned bacterial or cultured (FISH) proved to be useful in understanding the genomic organization of numerous vertebrate species (Gray et al. 2002). The same methods have sporadically been used to examine the chromosome in the phylum Mollusca (Guo & Allen 1997, Zhang et al. 1999b). In particular, available karyologic data on the class Gastropoda indicate that more than 300 species have been analyzed cytogenetically (Patterson 1969, Nakamura 1985, Thiriot-Quievreux 1994)), whereas <20 of them have been examined using these techniques (Vitturi et al. 2002). In this context, to ascertain the cytogenetic characteristics of H. rufescens, the karyotype of this species (2 n = 36) has been reported with eight metacentric metacentric /meta·cen·tric/ (-sen´trik) having the centromere near the middle, so that the arms of the replicating chromosome are approximately equal in length.
adj. , eight submetacentric, one submetacentric/ metacentric and one subtelocentric chromosome pair (Gallardo-Escarate et al. 2004, Gallardo-Escarate et al. 2005a).
Together with banding and FISH techniques, flow cytometry flow cytometry (flōˑ sī·tˑ·m has been used for the analysis of DNA contents of genomes, specific chromosomes and chromosomal karyotyping Karyotyping
A laboratory test used to study an individual's chromosome make-up. Chromosomes are separated from cells, stained, and arranged in order from largest to smallest so that their number and structure can be studied under a microscope. (Langlois et al. 1982, Rodriguez-Juiz et al. 1996, Lucretti & Dolezel 1997, Dolezel et al. 2004). In addition, flow cytometry can be used for the isolation of specific chromosomes for the construction of chromosome-specific libraries, and for gene cloning from a chromosomalspecific region of a complex genome (Macas et al. 1993). However, the application of flow cytometry and sorting (flow cytogenetics) has been used mainly in plant (Dolezel et al. 2004) and human genomes (Trask 2002). The application of these techniques in molluscs has been delayed by difficulties in obtaining cellular line cultures, therefore preparation of suspensions of intact chromosomes and discrimination of individual chromosome types by cytometry remains in stand by until now.
Recently, image analysis methods have been introduced in cytogenetic research (Kato & Fukui 1998, Zhang et al. 1999a, Houtsmuller et al. 2000). It has been shown that the genome size data obtained by image analysis methods are comparable to flow cytometry data (Uozu et al. 1997). We also reported a new method for the estimation of cell DNA content using fluorescence fading (Gallardo-Escarate et al. 2005b). We measured the fluorescence intensity in DAPI-stained nuclei of several species. The estimation of the area under the curve (integral fading) during a fading period was related with the genome size. Our results showed that the fluorescence in spermatozoa spermatozoa
see spermatozoon. and red blood cell red blood cell: see blood. nuclei of Oreochromis mossambicus, spermatozoa of Haliotis rufescens and red blood cell nuclei of Oncorhynchus mykiss, decreases rapidly when these nuclei were exposed to ultra violet light. The integral fading values calculated for each nuclear type showed a linear relationship with genome size reported for these species (r = 0.99), therefore we proposed a linear equation ([??] = 3337.2[??] + 596.8) to estimate other genome size. This work demonstrated the feasibility to estimate genome sizes by quantification of fluorescence fading.
In this study, we analyzed chromosomal DNA contents and their DNA variations. Furthermore, to propose chromosomes as markers in Haliotis rufescens we analyzed the correlations among DNA contents measured by fluorescence image analysis, and chromosome areas and lengths. Finally, we proposed an alternate technique for DNA content estimation in abalone chromosomes using image analysis.
MATERIALS AND METHODS
Chromosome Preparation and DNA-fluorescent Staining
Swimming trochophore troch·o·phore
The small, free-swimming, ciliated aquatic larva of various invertebrates, including certain mollusks and annelids.
[Greek trokhos, wheel (from trekhein, larvae Larvae, in Roman religion
Larvae: see lemures. of Pacific red abalone (20-24 h after fertilization), were placed in a colchicine colchicine (kŏl`chəsēn'), alkaloid extracted from plants of the genus Colchicum and especially from the corms of the autumn crocus, Colchicum autumnale (see meadow saffron). seawater solution (0.005%) during 3 h. After the antimitotic an·ti·mi·tot·ic
Preventing or interfering with mitosis: an antimitotic drug.
an treatment, the samples were kept for 45 min in a hypotonic hypotonic /hy·po·ton·ic/ (-ton´ik)
1. denoting decreased tone or tension.
2. denoting a solution having less osmotic pressure than one with which it is compared. solution (seawater: distilled water, 1:1). The larvae were fixed in modified Carnoy solution (methanol: acetic acid acetic acid (əsē`tĭk), CH3CO2H, colorless liquid that has a characteristic pungent odor, boils at 118°C;, and is miscible with water in all proportions; it is a weak organic carboxylic acid (see carboxyl group). , 3:1) by rinsing the samples three times in the fixative fixative /fix·a·tive/ (fik´sit-iv) an agent used in preserving a histological or pathological specimen so as to maintain the normal structure of its constituent elements.
adj. at 10 min intervals. Fixed cells were stored at 4[degrees]C in 70% ethanol solution. The cell suspension of each sample was made by cell dissociation in 50% acetic acid and strong agitation with a Pasteur pipette. The cell suspension was then dropped onto preheated glass slides (45[degrees]C) and air-dried. Then slides were washed in three changes with Phosphate Buffer Saline (13 mM NaCl, 0.2 mM KC1, 0.8 mM Na2HPO HPO
1. hyperbaric (high-pressure) oxygenation.
2. hypertrophic pulmonary osteodystrophy. 4, 0.2 mM KH2PO4, pH 7.4) (PBS PBS
in full Public Broadcasting Service
Private, nonprofit U.S. corporation of public television stations. PBS provides its member stations, which are supported by public funds and private contributions rather than by commercials, with educational, cultural, 1X) for 5 min each time, and incubated with DAPI solution in the dark for 25 min at room temperature (25[degrees]C) using a Coplin jar. The DAPI solution stain was prepared with 4,6-diamidino-2-phenylindole (DAPI) (Sigma--Aldrich, USA) in PBS1X at 0.5 [micro]g/mL. Slides were then observed only with PBS1X, none antifading was used.
The image capture was generated by programming the digital capture process using QWIN software (Copyright by Imaging Systems Ltd, Cambridge, United Kingdom 1997). This program captured a color digital image of 2088 x 1550 pixels. For each observation field, images were captured in intervals of 1.6 sec during a fluorescence-fading period in the same field. The aim of these sequential image capturing was to obtain images to be used for chromosomal fluorescence fading estimation, and chromosome morphologic measurements. The image capture conditions were: CCD CCD
in full charge-coupled device
Semiconductor device in which the individual semiconductor components are connected so that the electrical charge at the output of one device provides the input to the next device. exposure time of 209 milliseconds, gamma equal to 1 (linear response) and color depth of 8 bit/channel. The fluorescence was measured using a motorized mo·tor·ize
tr.v. mo·tor·ized, mo·tor·iz·ing, mo·tor·iz·es
1. To equip with a motor.
2. To supply with motor-driven vehicles.
3. To provide with automobiles. epifluorescent microscope (Leica model DMRXA2) equipped with a RGB color digital camera of 36-bits and 3.3 Mega Pixels (Leica model DC300).The fluorescence conditions were: excitation filter UV 340-380 nm, dichromatic dichromatic /di·chro·mat·ic/ (di?kro-mat´ik) pertaining to or having dichromatic vision.
1. Having or exhibiting two colors.
2. mirror DM 400 nm, suppression filter LP 425, absorption band AB 435-485 nm and objective lens PL Fluotar 100X/1.3.
Identification of homologue homologue /ho·mo·logue/ (hom´ah-log)
1. any homologous organ or part.
2. in chemistry, one of a series of compounds distinguished by addition of a CH2 group in successive members. chromosomes was performed by digital measurements according to (Gallardo-Escarate et al. 2004). After identification of homologue chromosomes, determinations of chromosomal arm lengths (short and large) and chromosome areas were determined using Image ProPlus software version 4.0 (Copyright 1993-1998 Media Cybernetics cybernetics [Gr.,=steersman], term coined by American mathematician Norbert Wiener to refer to the general analysis of control systems and communication systems in living organisms and machines. ). A total of 356 chromosomes were randomly measured and their centromeric cen·tro·mere
The most condensed and constricted region of a chromosome, to which the spindle fiber is attached during mitosis.
cen index was calculated (100 x length of short arm/total chromosome length). Karyotype was arranged, and classified according to (Levan et al. 1964) by decreasing size and centromeric position.
Fluorescence Fading Analysis
The image analysis was performed by three algorithms specifically built using MATLAB software (Copyright 1984-2000, The MathWorks, Inc.). The first algorithm was built to obtain subimages of 51 x 51 pixels from the initial captured images of 2088 x 1550 pixels. Each subimage of 51 x 51 pixels contained a single chromosome, which was captured during the fading period. The fluorescence fading period was recorded in a stack of 20 images (fading period). The second algorithm was used to generate a binary mask or a contour of the chromosome. The purpose of this mask was to filter the image background by multiplication between pseudocolor image and binary mask (0 and 1 pixel values), to obtain the highest brightness information (fluorescence) from each chromosome image. The third algorithm was generated to estimate the area under the curve by one integration function of the pixel intensities (fluorescence intensity) in 256 level of brightness, thus for each chromosome DNA-fluorescent mean intensity in a 256 scale was calculated. The pixel mean intensity (PMI See Private Mortgage Insurance. ) was estimated using the binary mask on the fluorescent image of each chromosome type. Each chromosome image was measured during the fluorescence-fading period until the fading time was completed. If all PMI are plotted during a fluorescent fading period, the area under the curve represents the integral fading (IF) like:
IF = [n.summation over (i=1)] [(PMI).sub.i] * [DELTA]t (1)
where i represents the number of images in a fading period and [DELTA]t time among each image captured. Thus IF represents the integral fading by the sum of the mean intensity (fluorescence) during the fading period. The haploid value of each chromosome was obtained by the linear model built with standard C-values. Using the linear model equation [??] = 3337.2[??] + 596.8, we obtained the unknown chromosomal DNA content for each chromosome type from the IF value estimated by quantification of fluorescence fading. To obtain the value of haploid chromosomal DNA content, the value of the bivalent chromosome bivalent chromosome
A pair of chromosomes temporarily united. was divided by two.
To obtain the chromosomal DNA content variations, several analyses were carried out to estimate the percentage of chromosomal variation and their contribution to the total genome size variation. These calculations were performed using 1-way ANOVA anova
see analysis of variance.
ANOVA Analysis of variance, see there and a posteriori [Latin, From the effect to the cause.]
A posteriori describes a method of reasoning from given, express observations or experiments to reach and formulate general principles from them. This is also called inductive reasoning. Tukey HSD HSD Human Services Department
HSD High Speed Data
HSD Hillsboro School District (Hillsboro, OR)
HSD Hybrid Synergy Drive (Toyota/Lexus)
HSD High School Diploma
HSD Historical Society of Delaware test. The ANOVA assumptions, normal distribution and homogeneity of variances were tested using Kolmogorov-Smirnov test and Bartlett test respectively. The statistical analyses were carried out using Statistica 6.1 software (Copyright 1984-2002, StatSoft, Inc.).
Chromosomal Fluorescence Fading
All chromosomal images in this study were processed using image analysis. The karyological observations on larvae of Pacific red abalone showed a diploid diploid /dip·loid/ (dip´loid)
1. having two sets of chromosomes, as normally found in the somatic cells; in humans, the diploid number is 46.
2. an individual or cell having two full sets of homologous chromosomes. number equal to 36 chromosomes. The karyotype of Haliotis rufescens indicated that this species possessed 8 metacentric pairs (1, 3, 6, 7, 14, 15, 17 and 18), 8 submetacentric pairs (2, 4, 5, 8, 9, 10, 11 and 13), 1 (12) was classified as a submetacentric/metacentric chromosome and one of subtelocentric chromosomes (16) (Fig. 1).
[FIGURE 1 OMITTED]
The brightness in DAPI-stained chromosomes was analyzed to determine the fluorescence intensity. The fluorescence images of H. rufescens chromosomes, recorded in color digital images of 8 bits, allowed converting the RGB (true color) images to pseudocolor images. The pseudocolor image allows visualizing and quantifying the fluorescence intensity by means of 256 levels of bright ness (Fig. 2a, 2b). Furthermore, the fluorescence intensity was measured in a subimage of 51 x 51 pixels obtained from initial images of 2088 x 1550 pixels.
[FIGURE 2 OMITTED]
In this study we used the fluorescence fading to estimate the DNA content in chromosomes of H. rufescens. First, chromosome images (subimages) were digitally measured to classify all captured chromosomes. Figure 3a shows the measurements in both, large and short arms. The fluorescent image was transformed to pseudocolor in reference to fluorescence intensity or 256 brightness levels (Fig. 3b). To discriminate the background, a chromosomal binary mask was built around the chromosome edge. Mask application on the pseudocolor images allowed discrimination of chromosomal regions from the background field (Fig. 3c). The region of interest was obtained by multiplication between (b) and (c) images (Fig. 3d).
[FIGURE 3 OMITTED]
To demonstrate the fluorescence fading in single chromosomes, we built a sequence of images from the initial exposures to ultraviolet light until its complete blanching
[FIGURES 4-5 OMITTED]
Chromosomal DNA Contents
According to the linear model used ([??] = 3337.2[??] + 596.8), where [??] represents the integral fading value (IF) and [??] the DNA content, we determined the chromosomal DNA content for each chromosome using the fluorescence fading information obtained from the stack of fluorescence images. The DNA content calculated for each chromosome type is shown in Table 1. The highest DNA content was found in the chromosome pair 1, and the lowest DNA content was found in the chromosome pair 18. To determine the base pair content for each chromosome, we assumed that the number of base pairs is equivalent to the mass in picograms (pg) x 0.978 x [10.sup.9] bp (Dolezel et al. 2003). Therefore, the total DNA content or genome size obtained from the sum of all chromosomes was estimated as 1.77 [+ or -] 0.005 pg or 1,732,724 converted into base pairs (Mbp).
Analysis of variance was performed to detect the effects of chromosomal variability of DNA contents in chromosomes of Haliotis rufescens. Significant differences were detected among chromosome type (P < 0.001). However, the posteriori analysis using Tukey HSD test, showed statistical differences only among extreme chromosomes, specifically among chromosomes 1-4 and chromosomes 13-18 (P < 0.05). The mean DNA contents showed a significant increment from chromosome 18 to chromosome 1 (P < 0.001) (Fig. 6). The largest variability of chromosomal DNA contents was observed in chromosomes 2, 4, 8, 11 and 15.
[FIGURE 6 OMITTED]
The correlation between DNA content and chromosome length was performed to ascertain the relationship among chromosomal size and condensation level of DNA. The correlation value was statistically significant (P < 0.001) with r = 0.8783 (Fig. 7). The same analysis was carried out for the chromosomal DNA content and chromosome area. The correlation value was r = 0.9066 and statistically significant (P < 0.001) (Fig. 8). The numbers inside the chart represent the chromosome type.
[FIGURES 7-8 OMITTED]
For several decades chromosomes have been analyzed by traditional karyotyping, which depends on the analysis of characteristic banding patterns along the length of each chromosome. The major disadvantage of conventional cytogenetic banding methods is the limited resolution (Langer et al. 2004). Computerized chromosome analyses began mainly by analyzing mammal chromosomes during the 1960s (Carlson et al. 1963). Several advances, in theoretical and in applied disciplines have made it possible to develop various automated systems, that can be used for cytogenetic diagnostic purposes (Weierich et al. 2003). In plants, the chromosome image analyzing system (CHIAS), which uses a universal image analyzer, has been developed and applied in several studies (Fukui et al. 1998, Kato & Fukui 1998, Lee et al. 2004). The CHIAS allows the identification of small plant chromosomes based on their condensation pattern.
In reference to cell DNA content estimation, several methods have been developed (Hardie et al. 2002). However, the main method applied to estimate the DNA contents in chromosomes has been so far flow cytometry. In flow cytometry, isolated chromosomes suspended in a fluorescent stain solution flow one at a time through a laser beam. The fluorescence signals resulting from laser excitation are measured for the chromosomes, yielding a frequency distribution of chromosomal fluorescence. The advantage of this method is related to the large number of chromosomes analyzed, providing high-precision population averages, that are not affected by cell-to-cell variations in chromosome condensation (Langlois et al. 1982).
The cytogenetic studies in invertebrates like molluscs are particularly problematic mainly because of their smaller chromosome size. However, several studies have been developed successfully, obtaining chromosomal banding and location by FISH of some genes of interest (Guo & Allen 1997, Zhang et al. 1999b, Vitturi et al. 2002, Gallardo-Escarate et al. 2005a). Nevertheless, flow karyotyping in molluscs showed problems caused by difficulties in obtaining pure cellular line cultures. In this context, this study represents an alternative method to estimate the chromosomal DNA contents by fluorescence image analysis. Our results showed that there is a positive correlation with their chromosome sizes (P < 0.001). Correlation values determined for chromosome length and area showed an improvement in the correlation value using chromosome area (r = 0.8783 and r = 0.9066 respectively). Possibly, this increase in r value could be because of condensation variation between chromosomes, and then the area measurement was a better indicator for chromosome size. According to Zhang et al. (1999a) the difference (percentage variation) among measurements of individual chromosomes was less than 5% in Crassostrea virginica, which accounted for technical variation (including manual error). Variation caused by biologic factors was analyzed by comparing different spreads of the same tissue type and spreads of different tissue types. The difference in relative lengths average was found to be as high as 9% among different spreads from individual embryos. In this sense, the difference found in our data could be largely derived from the continuous changes of chromosome morphology produced during the cell cycle. On the other hand, results of this study demonstrate that our measurement system is sensitive and capable of detecting minor differences among individual chromosomes. However, it was difficult to sort chromosomes of intermediate sizes using chromosomal DNA contents. Statistical analysis showed differences only among extreme chromosomes (1-4 and 13-18). This study shows the largest chromosomal DNA variability in following chromosomes: 2, 4, 8, 11 and 15.
In reference to fluorescence fading method, this technique is based on the fluorescent decay lifetime of the fluorochrome fluorochrome /flu·o·ro·chrome/ (-krom) a fluorescent compound used as a dye to mark protein with a fluorescent label.
n. when this is exposed to excitation light. The photochemical photochemical
in laser treatment, the laser light is absorbed and converted into chemical energy. process underlying the fluorescence decay of DAPI has not yet been fully explained, although theories suggesting the involvement of oxygen, triplet triplet /trip·let/ (trip´let)
1. one of three offspring produced at one birth.
2. a combination of three objects or entities acting together, as three lenses or three nucleotides.
3. states and protein denaturalization have been proposed (Hirschfeld 1979, Song et al. 1995, Song et al. 1996). However, to prevent retardation of fading in microscopy, several methods can be used to remove oxygen from the mounting medium. Furthermore it is feasible to increase the viscosity of the medium and avoid the oxygen diffusion (Johnson et al. 1982, Onoa et al. 2001). The point is to retard the diffusion of oxygen and consequently reduce the amount of oxidized oxidized
having been modified by the process of oxidation.
see absorbable cellulose. fluorochromes. Our proposed method only used phosphate buffer saline (PBS) as mounting medium, therefore the photochemical process is not modified. In this study we estimated the individual DNA content for each chromosome type (Table 1), and the total DNA content or genome size refers to the haploid amount of DNA. Our data show a genome size for Haliotis rufescens of 1.77 [+ or -] 0.005 pg. Hinigardner (1974) using classic techniques reported for this species a genome size of 1.8 pg.
We have described here a fluorescent imaging method for analyzing chromosome morphology and especially chromosomal DNA contents. To our knowledge, this is the first report of chromosomal DNA content in molluscs by image analysis. Further more, this methodology has been applied to estimate the genome size of two populations of the northern scallop scallop or pecten, marine bivalve mollusk. Like its close relative the oyster, the scallop has no siphons, the mantle being completely open, but it differs from other mollusks in that both mantle edges have a row of steely blue "eyes" and Argopecten purpuratus (Gallardo-Escarate et al. 2005c).
The authors thank Dr. Jaroslav Dolezel and Karin Lohrmann for their helpful comments on this manuscript. This study was supported by the Mexican National Council of Science and Technology (Project 36075-B and Project 33018-B). The first author is a CONICYT-BID (Chile) Ph.D. fellow and thanks Direccion de Telematica for the support received in the writing of this paper.
Arai, K. & N. Wilkins. 1986. Chromosomes of Haliotis tuberculata L. Aquaculture 58:305-308.
Carlson, L., T. Caspersson & G. Foley. 1963. The application of quantitative cytochemical techniques to the study of individual mammalian chromosomes. Exp. Cell Res. 31:589-594.
Dolezel, J., J. Bartos, H. Voglmayr & J. Greilhuber. 2003. Nuclear DNA content and genome size of trout and human. Cytometry 51A: 127-128.
Dolezel, J., M. Kubalakava J. Bartos & J. Macas. 2004. Flow cytogenetics and plan genome mapping. Chromosome Res. 12:77-91.
Fujino, K., O. Sei-Ichi & H. Inayoshi. 1987. Temperature tolerance differences among normal diploid and triploid triploid /trip·loid/ (trip´loid) having triple the haploid number of chromosomes (3n).
Having three times the haploid number of chromosomes in the cell nucleus.
n. pacific abalones. Nippon Suisan Gakkishi 53:15-21.
Fukui, K., S. Nakayama, N. Ohmido, H. Yoshiaki & M. Yamabe. 1998. Quantitative karyotyping of three diploid Brassica brassica
Any plant of the large genus Brassica, in the mustard family, containing about 40 Old World species and including the cabbages, mustards, and rapes. B. oleracea has many edible varieties, such as broccoli, Brussels sprouts, cabbage, cauliflower, kale, and kohlrabi. species by imaging methods and localization Customizing software and documentation for a particular country. It includes the translation of menus and messages into the native spoken language as well as changes in the user interface to accommodate different alphabets and culture. See internationalization and l10n. of 45s rDNA loci on the identified chromosomes. Theor. Appl. Genet genet: see civet. . 96:325-330.
Gallardo-Escarate, C., J. Alvarez-Borrego, M. A. del Rio-Portilla, I. Cross, A. Merlo & L. Rebordinos. 2005a. Fluorescence in situ hybridization Fluorescence in situ hybridization (FISH)
A technique for diagnosing DiGeorge syndrome before birth by analyzing cells obtained by amniocentesis with DNA probes. FISH is about 95% accurate. of rDNA, telomeric (TTAGGG)n and (GATA GATA Gold Anti-Trust Action Committee (International Financial Advocacy Organization)
GATA Georgia Academic Team Association
GATA Gülhane Askerý Tip Akademýsý
GATA Get At Their Asses )n repeats in the red abalone Haliotis rufescens (Archaeogastropoda: Haliotidae). Hereditas 142:1-7.
Gallardo-Escarate, C., J. Alvarez-Borrego, M.A. del Rio-Portilla & V. Kober. 2004. Karyotype of Pacific red abalone Haliotis rufescens (Archaeogastropoda:
Haliotidae), using image analysis. J. Shellfish Res. 23:205-209.
Gallardo-Escarate, C., J. Alvarez-Borrego, V. Kober & M.A. del Rio Portilla. 2005b. Relationship between DAPI-Fluorescent fading and nuclear DNA content: an alternate method to DNA quantification? Journal of Fluorescence: Submitted.
Gallardo-Escarate, C., J. Alvarez-Borrego, E. yon Brand Skopnik & M. A. del Rio-Portilla. 2005c. Genome size estimation in two populations of the northern scallop Argopecten purpuratus (Lainarck, 1879), using fuorescence image analysis. J. Shellfish Res. 24:55-60.
Gray, B., R. Zori, P. Mcguire & R. Bonde. 2002. A first generation cytogenetic ideogram id·e·o·gram
1. A character or symbol representing an idea or a thing without expressing the pronunciation of a particular word or words for it, as in the traffic sign commonly used for "no parking" or "parking prohibited. for the Florida manatee (Trichechus manatus latirostris) based on multiple chromosome banding techniques. Hereditas 137:215-223.
Guo, X. & S. Allen. 1997. Fluorescence in situ hybridization of vertebrate telomere telomere /telo·mere/ (tel´o-mer) an extremity of a chromosome, which has specific properties, one of which is a polarity that prevents reunion with any fragment after a chromosome has been broken. sequence to chromosome ends of the pacific oyster, Crassostrea gigas Thunberg. J. Shellfish Res. 16:87-89.
Hardie, D., R. Gregory & P. Hebert. 2002. From pixels to picograms: A beginners' guide to genome quantification by feulgen image analysis densitometry densitometry /den·si·tom·e·try/ (den?si-tom´i-tre) determination of variations in density by comparison with that of another material or with a certain standard. . J. Histochem. Cytochem. 50:735-749.
Hinigardner, R. 1974. Cellular DNA content of the Mollusca. Comp. Biochem. Physiol. 47A:447-460.
Hirschfeld, T. 1979. Fluorescence background discrimination by pre-bleaching. J. Histochem. Cytochem. 27:96-101.
Houtsmuller, A., J. Oud oud
A musical instrument of northern Africa and southwest Asia resembling a lute.
[Arabic 'd, wood, stem, lute, oud.] , M. Montijn, M. Worring, A. Smeulders & N. Nanninga. 2000. Chromosome no. 1 of Crepis capillaris shows defined 3D-shapes in mitotic mitotic
pertaining to mitosis.
degree to which a cell population is proliferating; used as an index of tumor aggression. prophase prophase /pro·phase/ (-faz) the first stage in cell reduplication in either meiosis or mitosis.
1. . Chromosome Res. 8:243-252.
Johnson, G., R. Davidson, K. McNamee, G. Russell, D. Goodwin & E. Holborow. 1982. Fading of inmunofluorescence during microscopy: a study of the phenomenon and its remedy. J. Inmunol. Methods 55:231-242.
Kato, S. & K. Fukui. 1998. Condensation pattern (CP) analysis of plant chromosomes by an improved chromosome image analyzing system, CHIAS III. Chromosome Res. 6:473-479.
Kudo, M., K. Arai & K. Fujino. 1991. Triploidization of Halliotis diversicolor diversicolor. Nippon Suisan Gakkishi 57:1263-1267.
Langer, S., K. Jurgen, I. Jentsch & M. Speicher. 2004. Multicolor chromosome painting in diagnostic and research applications. Chromosome Res. 12:12-15.
Langlois, G., L. Yu, J. Gray & A. Carrano. 1982. Quantitative karyotyping of human chromosomes by dual beam flow cytometry. Proc. Natl. Acad. Sci. USA 79:7876-7880.
Lee, J.-H., Y. Ma, T. Wako, L. C. Li, K.-Y. Kim, S.-W. Park, S. Uchiyama & K. Fukui. 2004. Flow karyotypes and chromosomal DNA contents of genus Triticum species and rye (Secale cereale). Chromosome Res. 12:93-102.
Levan, A., K. Fredga & A. Sandberg. 1964. Nomenclature of centromeric positions on chromosomes. Hereditas 52:201-220.
Lindberg, D. 1992. Evolution, distribution and systematics systematics: see classification. of Haliotidae. In: S. Shepherd, M. Tegner & S. Guzman del Proo, editors. Abalone of the world, biology, fisheries and cultured. Oxford, USA: Fishing News Books. pp. 3-18.
Lucretti, S. & J. Dolezel. 1997. Bivariate bi·var·i·ate
Mathematics Having two variables: bivariate binomial distribution.
Adj. 1. flow karyotyping in broad bean (Vicia faba). Journal of Cytometry 28:236-242.
Macas, J., J. Dolezel, S. Lucretti, U. Pich, A. Meister, J. Fuchs & I. Schubert. 1993. Localization of seed storage protein genes on flow-sorted field bean chromosomes. Chromosome Res. 1:107-115.
Maldonado, R., A. Ibarra, J. Ramirez, S. Avila, J. Vazquez & L. Badillo. 2001. Induction of triploidy Triploidy
The condition where an individual has three entire sets of chromosomes instead of the usual two.
Mentioned in: Polydactyly and Syndactyly
state of being triploid. in pacific red abalone (Haliotis rufescens). J. Shellfish Res. 20:1071-1075.
Nakamura, H. 1985. A review of molluscan mol·lus·can also mol·lus·kan
Of or relating to the mollusks.
A mollusk. cytogenetic information based on the CISMOCH computerized index system for molluscan chromosomes, Bivalvia, Polyplacophora and Cephalopoda. Venus Jpn. Journal Malacology mal·a·col·o·gy
The branch of zoology that deals with mollusks.
[French malacologie, contraction of malacozoologie, from New Latin Malacoz 44:193-226.
Oakes, F. & R. Ponte. 1996. Abalone market: opportunities for cultured abalone. Aquaculture 140:187-195.
Onoa, M., T. Murakamib, A. Kudoc, M. Isshikid, H. Sawadaa & A. Segawae. 2001. Quantitative comparison of anti-fading mounting media for confocal laser scanning microscopy Confocal laser scanning microscopy (CLSM or LSCM) is a technique for obtaining high-resolution optical images. The key feature of confocal microscopy is its ability to produce in-focus images of thick specimens, a process known as . J. Histochem. Cytochem. 49: 305-312.
Patterson, C. 1969. Chromosomes of mollusks. Proceedings of symposium on mollusca. Marine Biology Association India. pp. 635-590.
Rodriguez-Juiz, A.M., M. Torrado & J. Mendez. 1996. Genome-size variation in bivalve bivalve, aquatic mollusk of the class Pelecypoda ("hatchet-foot") or Bivalvia, with a laterally compressed body and a shell consisting of two valves, or movable pieces, hinged by an elastic ligament. molluscs determined by flow cytometry. Mar. Biol. 126:489-497.
Song, L., E. Hennink, I. Young & H. Tanke. 1995. Photobleaching Photobleaching is the photochemical destruction of a fluorophore. In microscopy, photobleaching may complicate the observation of fluorescent molecules, since they will eventually be destroyed by the light exposure necessary to stimulate them into fluorescing. kinetics of fluorescein fluorescein /flu·o·res·ce·in/ (fldbobr-res´en) a fluorescing dye; its sodium salt is used as a tracer in retinal angiography and as a diagnostic aid for revealing corneal trauma and fitting contact lenses. in quantitative fluorescence microscopy. Biophys. J. 68: 2588-2600.
Song, L., C. Varma, W. Verhoeven & H. Tanke. 1996. Influence of the triplet excited state on the photobleaching kinetics of fluorescein in microscopy. Biophys. J. 70:2959-2968.
Thiriot-Quievreux, C. 1994. Advances in cytogenetics of aquatic organisms. In: A. Beaumont, editor. Genetics and evolution of aquatic organisms. London: Chapman and Hall Chapman and Hall was a British publishing house, founded in the first half of the 19th century by Edward Chapman and William Hall. Upon Hall's death in 1847, Chapman's cousin Frederic Chapman became partner in the company, of which he became sole manager upon the retirement of . pp. 369-388.
Trask, B. 2002. Human cytogenetics: 46 chromosomes, 46 years and counting. Nature 3:769-778.
Uozu, S., N. Ohmido, H. Ohtsubo, E. Ohtsubo & K. Fukui. 1997. Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza. Plant Mol. Biol. 35:791-799.
Vitturi, R., M. Colomba, L. Castriota, A. Beltrano, A. Lannino & N. Volpe. 2002. Chromosome analysis using different staining techniques and fluorescent in situ hybridization in Cerethium vulgatum (Gastropoda: Cerithiidae). Hereditas 137:101-106.
Weierich, C., A. Brero, S. Stein, J. von Hase, C. Cremer, T. Cremer & I. Solovei. 2003. Three-dimensional arrangements of centromeres and telomeres in nuclei of human and murine murine /mu·rine/ (mur´en) pertaining to, derived from, or characteristic of mice or rats.
adj. lymphocytes. Chromosome Res. 11:485-502.
Zhang, G., Z. Wang, Y. Chang, Y. Song, Y. Ding, Y. Wang & R. Wang. 1998. Triploid induction in the pacific abalone Haliotis discus hannai ino by 6-dimethylaminopurine and the performance of triploid juveniles. J. Shellfish Res. 17:783-788.
Zhang, G., G. Yu, R. Cooper & T. Tiersch. 1999a. High-resolution analylsis of karyotypes prepared from different tissue of the Easter oyster Crassostrea virginica. J. Shellfish Res. 18:115-120.
Zhang, Q., G. Yu, R. Cooper & T. Tiersch. 1999b. Chromosomal location by fluorescence in situ hybridization of the 28s ribosomal RNA gene of the Eastern oyster. J. Shellfish Res. 18:431-435.
CRISTIAN GALLARDO-ESCARATE, (1,2 *) JOSUE ALVAREZ-BORREGO, (2) MIGUEL ANGEL DEL RIO-PORTILLA, (3) ELISABETH VON BRAND-SKOPNIK (1) AND MARIO A. BUENO (2)
(1) Departamento de Biologia Marina, Facultad de Ciencias del Mar, Universidad Catolica del Notre. Larrondo 1281, Casilla 117, Coquimbo, Chile; (2) Direccion de Telematica, (3) Departamento de Acuicultura. Centro de Investigacion Cientifica y de Educacion Superior de Ensenada. Km. 107 Carretera Tijuana-Ensenada, Codigo Postal 22860, Ensenada, B.C. Mexico
* Corresponding author: firstname.lastname@example.org
TABLE 1. Chromosome DNA content of Hatiotis rufescens and its conversion into Mega base pairs (Mbp). Mean DNA Standard Content Deviation Chromosome (pg) (pg) Mbp * 1 0.1106 0.0045 108,201 2 0.1051 0.0098 102,752 3 0.1035 0.0053 101,175 4 0.1010 0.0093 98,824 5 0.0999 0.0077 97,655 6 0.0976 0.0072 95,490 7 0.0997 0.0089 97,474 8 0.0982 0.0099 96,087 9 0.0994 0.0063 97,243 10 0.1006 0.0094 98,393 11 0.0975 0.0104 95,319 12 0.0979 0.0085 95,757 13 0.0969 0.0075 94,784 14 0.0958 0.0087 93,690 15 0.0934 0.0090 91,355 16 0.0939 0.0076 91,825 17 0.0917 0.0077 89,640 18 0.0890 0.0060 87,056 Total 1.7717 0.0050 1,732,720 * Number of base pairs = mass in pg x 0.978 x [10.sub.9] (Dolezel et al. 2003)