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An evaluation of back-calculation methodology using simulated otolith data.


Abstract--I simulated somatic somatic /so·mat·ic/ (so-mat´ik)
1. pertaining to or characteristic of the soma or body.

2. pertaining to the body wall in contrast to the viscera.


so·mat·ic
adj.
 growth and accompanying otolith otolith /oto·lith/ (o´to-lith) statolith.

o·to·lith
n.
1. Any of numerous minute calcareous particles found in the inner ear of certain lower vertebrates and in the statocysts of many
 growth using an individual-based bioenergetics bioenergetics,
n 1. system in which natural healing is enhanced by creating harmony between the patient's body and the natural environment.
2.
 model in order to examine the performance of several back-calculation methods. Four shapes of otolith radius-total length relations (OR-TL) were simulated. Ten different back-calculation equations, two different regression models of radius-length, and two schemes of annulus annulus /an·nu·lus/ (an´u-lus) pl. an´nuli   [L.] anulus.

an·nu·lus or an·u·lus
n. pl. an·nu·lus·es or an·nu·li
A circular or ring-shaped structure.
 selection were examined for a total of 20 different methods to estimate size at age from simulated data sets of length and annulus measurements. The accuracy of each of the twenty methods was evaluated by comparing the back-calculated length-at-age and the true length-at-age. The best back-calculation technique was directly related to how well the OR-TL model fitted. When the OR-TL was sigmoid sigmoid /sig·moid/ (sig´moid)
1. shaped like the letter C or S.

2. sigmoid colon.


sig·moid or sig·moi·dal
adj.
1. Having the shape of the letter S.
 shaped and all annuli an·nu·li  
n.
A plural of annulus.
 were used, employing a least-squares linear regression Linear regression

A statistical technique for fitting a straight line to a set of data points.
 coupled with a log-transformed Lee back-calculation equation (y-intercept corrected) resulted in the least error; when only the last annulus was used, employing a direct proportionality back-calculation equation resulted in the least error. When the OR-TL was linear, employing a functional regression coupled with the Lee back-calculation equation resulted in the least error when all annuli were used, and also when only the last annulus was used. If the OR-TL was exponentially shaped, direct substitution into the fitted quadratic equation quadratic equation

Algebraic equation of particular importance in optimization. A more descriptive name is second-degree polynomial equation. Its standard form is ax2 + bx + c
 resulted in the least error when all annuli were used, and when only the last annulus was used. Finally, an asymptotically shaped OR-TL was best modeled by the individually corrected Weibull cumulative distribution function when all annuli were used, and when only the last annulus was used.

**********

The average rate of growth of an individual fish in a population is critical to age-based stock assessments. The average rate at which the fish within the stock increases in weight ultimately determines the level of effort required to extract a desired yield from the stock as a whole (Ricker, 1975). Furthermore, current conservation standards (Gulland and Boerema, 1973; Goodyear, 1993) are dependent upon the rate of individual growth. Thus, errors in the estimation of growth can lead to erroneous advice to fishery managers concerning the present and possible future status of a population.

By far the most common method of estimating fish growth rate is by estimating the age of individual fish from calcified Calcified
Hardened by calcium deposits.

Mentioned in: Heart Valve Repair
 structures (scales, otoliths, spines, etc.; but for this study, however, otoliths were considered the representative hard structure) and with the subsequent assumption that these fish are an unbiased representation of size at that age. Growth is then described as the change in weight or length over some unit of time. To standardize age at which size is estimated, or to obtain length-at-age data on ages not included in the sample, back-calculation techniques are often employed to estimate a fish's size at a previous age (Bagenal, 1978). The process of back calculation can be broken down into three steps: verification of the periodicity periodicity /pe·ri·o·dic·i·ty/ (per?e-ah-dis´i-te) recurrence at regular intervals of time.

pe·ri·o·dic·i·ty
n.
1.
 of annulus formation, establishment of an otolith radius-total body length (OR-TL) relation, and the estimation of size at the time of annulus formation. In this study, I used simulations to examine how the establishment of the OR-TL relation and the form of the back-calculation equation used may influence growth rate estimates made from otoliths.

The back-calculation process assumes that somatic growth is directly related to otolith growth (Bagenal, 1978). This assumption is usually validated through the demonstration of a relationship between the otolith radius and body length by a least-squares regression of body length on otolith radius. A variation of this technique uses a functional (model II) regression, based on the assertion that neither body length nor otolith radius are truly independent (i.e. measured without error) (Ricker, 1973, Laws and Archie, 1981). Uncertainties can enter this process from several sources. For example, incomplete data can make it difficult to discern if this relationship is linear. Furthermore, using regression to estimate beyond the range of the data is not recommended. Estimating beyond the range of the data can become a problem when back-calculating to very early ages that are not represented in the sample. Furthermore, several studies have found that otolith growth and somatic growth can be uncoupled (Mosegaard et al., 1988; Reznick et al., 1989; Secor and Dean, 1989; Wright et al., 1990; Milicich and Choat, 1992; Secor and Dean, 1992). Hales and Able (1995) found that changes in somatic growth accounted for only half of the variation in otolith growth. This uncoupling of somatic and otolith growth rates Growth Rates

The compounded annualized rate of growth of a company's revenues, earnings, dividends, or other figures.

Notes:
Remember, historically high growth rates don't always mean a high rate of growth looking into the future.
 challenges the assumption that back-calculation is based on.

The question of what is the proper back-calculation equation to use is a question that has received considerable attention. Bagenal (1978) discussed three separate methods and suggested that a combination of methods might be helpful in some cases. Francis (1990) presented an in-depth review of six different back-calculation equations and their use. Ricker (1992) later commented on the conclusions of Francis (1990) to suggest yet another variation on the method. Further variation exists on exactly which combination of annuli to use. Standard method suggests the use of all available annuli within the otolith to increase sample size. However, recent literature (Vaughan and Burton, 1994), as well as older reports (Ricker, 1973), have suggested that only the most recently formed annuli should be used. A review of the literature on age and growth shows that a variety of techniques are in use today and that there is no real agreement on a definitive method. The purpose of this study was to examine how well the various back-calculation techniques accurately estimate lengths at previous ages and to examine the biases associated with each technique.

Methods

Model structure

I simulated somatic and otolith growth using a bioenergetics model. A detailed description of the model is presented in Schirripa and Goodyear (1997). The life history and growth parameters were calibrated to fit, as closely as possible, to reported estimates of striped bass growth (Bason (1)); however the model is not intended to be a striped bass model per se. Because of the commercial and recreational importance of striped bass, a great body of literature from the field and laboratory work is available. One of the most studied populations of striped bass is that of the Chesapeake Bay Chesapeake Bay, inlet of the Atlantic Ocean, c.200 mi (320 km) long, from 3 to 30 mi (4.8–48 km) wide, and 3,237 sq mi (8,384 sq km), separating the Delmarva Peninsula from mainland Maryland. and Virginia.  system (Cohen cohen
 or kohen

(Hebrew: “priest”) Jewish priest descended from Zadok (a descendant of Aaron), priest at the First Temple of Jerusalem. The biblical priesthood was hereditary and male.
 et al., 1983; Coutant et al., 1984; Goodyear, 1984, 1985; Tuncer, 1988; Coutant and Benson, 1990; Secor, 1992; Brandt and Kirsch kirsch  
n.
A colorless brandy made from the fermented juice of cherries.



[French, short for German Kirschwasser; see kirschwasser.
, 1993; Rose and Cowan, 1993; Rutherford and Houde, 1995; Secor and Houde, 1995). Biological and environmental parameters reported for the populations of this system were used whenever possible. The growth model used an individually based framework, but rather than following every fish of the cohort singly, "cells" of fish with identical attributes were followed instead (Rose et al., 1993). A total of 250 cells, each with eleven attributes, were modeled. Attributes examined included age, length, biomass, daily food ration, food conversion efficiency, otolith weight, otolith radius, maximum length attained, maximum biomass attained, brain weight, condition factor, and number of fish that the cell represented.

The term "population" is used to define those fish that remained alive for the entire simulation, unaffected by either natural or fishing mortality. The term "catch" refers to the entire group of fish that were susceptible and killed due to fishing mortality, and "sample" refers to a subsample sub·sam·ple  
n.
A sample drawn from a larger sample.

tr.v. sub·sam·pled, sub·sam·pling, sub·sam·ples
To take a subsample from (a larger sample).
 of individuals from the catch, selected on the basis of length and frequency within the catch. Frequency in the catch was a function of the selectivity of the gear under consideration and frequency in the population. For the purposes of this study, gear was considered nonselective. Annulus formation within the otolith was assumed to occur at the end of every growth year and to be measured without error.

The specific somatic growth rate of an individual fish was calculated by a balanced energy equation. Equations for rates of consumption, respiration respiration, process by which an organism exchanges gases with its environment. The term now refers to the overall process by which oxygen is abstracted from air and is transported to the cells for the oxidation of organic molecules while carbon dioxide (CO , egestion, and excretion generally followed those given by Hewett and Johnson. (2) The otolith growth model used was a modification of the equations presented by Mosegaard. (3) Fish formed an otolith when they reached 90 mm in length. Daily change in otolith weight ([O.sub.w]) was modeled as a function of daily change in either brain weight ([B.sub.w]) or brain length (Bi). In the case of brain weight, weight specific brain growth rate was modeled as a function of the somatic growth rate as follows

(1) Growth. Brain = Growth. Somatic x [a.sub.2],

where [a.sub.2] = less than 1, denoting that brain growth rate is slower than somatic growth rate.

The change in [B.sub.w] then was calculated as

(2) d[B.sub.w]/dt = Growth. Brain x [B.sub.w].

The daily change in otolith weight was then calculated as

(3) d[O.sub.w]/dt = [a.sub.4] x Brain.weight x [temp.sup.[a.sub.1]],

where [a.sub.4] = the conversion factor from brain weight to otolith weight (see below);

temp = the average temperature for the day in degrees centigrade centigrade /cen·ti·grade/ (sen´ti-grad) having 100 gradations (steps or degrees); see under scale.

cen·ti·grade
adj.
Celsius.
; and

[a.sub.1] = 0.77, which is used to determine the overall size of the otolith.

Otolith radius, [O.sub.r], was then calculated from [O.sub.w] assuming a spherical shape as

(4) [O.sub.r] = [O.sub.w] / SpD x [(3 / 4[pi]).sup.0.333],

where SpD = 2.5 and is the specific density of the otolith.

Assuming a spherical shape resulted in a unique radius for a given weight (i.e. a sphere made it unnecessary to consider otolith length).

When brain length was used to model otolith radius, [B.sub.w] was calculated as in Equation 2 and [B.sub.l] was calculated as the cube root cube root
n.
A number whose cube is equal to a given number.


cube root
Noun

the number or quantity whose cube is a given number or quantity: 2 is the cube root of 8 
 of [B.sub.w]:

(5) [B.sub.1] = [[B.sub.W].sup.0.333].

Or was then calculated as

(6) [O.sub.r] = [B.sub.1] x 0.5.

Otolith radius-total length relation

The OR-TL relation was fitted as closely as possible to that reported for striped bass by Heidinger and Clodfelter (1987). Modeling the conversion factor [a.sub.4] (Eq. 3) as a function enabled me to generate four different OR-TL relations typically found in nature. A sigmoid shaped OR-TL (OR-TL/SIG) relation (Fig. 1A) relation was achieved by setting the parameter [a.sub.2] = 0.08 and modeling the parameter [[alpha].sub.4] as a function of body length:

(7) [a.sub.4] = 9 + (-7 x Sin (0.006 x Length) + 5).

[FIGURE 1 OMITTED]

A linear shaped OR-TL (OR-TL/LIN) relation (Fig. 1B), as found in striped bass (Heidinger and Clodfelter, 1987) was achieved by setting the parameter [a.sub.2] (from Eq. 1) to 0.85 and modeling otolith radius as a function of brain length (the parameter a4 was not necessary for this relation). An exponential OR-TL(OR-TL/EXP) relation (Fig. 1C), similar to that found for vermilion snapper The vermilion snapper, Rhomboplites aurorubens, is an abundant species of snapper found along the North American coast of the Atlantic Ocean from North Carolina to Bermuda and throughout the Gulf of Mexico to Brazil. The vermilion snapper is often sold as red snapper. , Rhomboplites aurorubens, (Grimes, 1978) was achieved by again setting the parameter [a.sub.2] to 0.08 and modeling the parameter [[alpha].sub.4] as a linear function of otolith weight:

(8) [a.sub.4] = 25 - (1.75 x [O.sub.W]).

An asymptotic OR-TL (OR-TL/ASYM) relation (Fig. 1D), similar to that found for walleye walleye, in medicine
walleye: see strabismus.
walleye, in zoology
walleye or walleyed pike: see perch.
, Stizostedion vitreum, (Heidinger and Clodfelter, 1987), was achieved by keeping the parameter [[alpha].sub.2] = 0.08 and modeling the parameter [[alpha].sub.4] as a function of total length:

(9) [a.sub.4] = 8.717E - 12 x [Length.sup.4].

Mortality

Mortality could occur from three sources: direct starvation, random natural mortality based on length, and fishing mortality. If a fish lost more than a specified percentage of its maximum attained body weight (35% for larvae Larvae, in Roman religion
Larvae: see lemures.
 and 50% for juveniles), it died from starvation. Fishing mortality was described first as an overall value (F=0.4) and then divided by 365 to calculate a daily value. In order to ensure that there would be no sampling bias due to gear selectivity, fishing mortality was assumed to be nonselective (random).

The four simulated OR-TL relations were described by using four different functions: 1) ordinary ]east squares (OLS OLS Ordinary Least Squares
OLS Online Library System
OLS Ottawa Linux Symposium
OLS Operation Lifeline Sudan
OLS Operational Linescan System
OLS Online Service
OLS Organizational Leadership and Supervision
OLS On Line Support
OLS Online System
) linear regression (model I)

(10) [L.sub.c] = a+ [R.sub.c]b,

where L = the total length; and R = the otolith radius and represents the independent variable (assumed to be measured with out error); 2) functional regression (model II), which has the identical formula as Equation 10 but does not assume an independent variable (i.e. both L and R are measured with error); 3) Weibull cumulative function (Weibull, 1951),

(11) [L.sub.c] = K (1-exp [-([R.sub.c]/[alpha]).sup.[beta]])

and 4) a third order quadratic equation

(12) [L.sub.c] = c + ([d.sub.1][R.sub.c]) + ([e.sub.2][R.sub.c.sup.2]) + ([f.sub.3][R.sub.c.sup.3]).

These four functions were fitted with the SAS (1) (SAS Institute Inc., Cary, NC, www.sas.com) A software company that specializes in data warehousing and decision support software based on the SAS System. Founded in 1976, SAS is one of the world's largest privately held software companies. See SAS System.  NLIN NLIN NOAA Library and Information Network  procedure (SAS, 1088).

Ten combinations of the back-calculation formula and OR-TL fitting procedures were used (Table 1). Methods 1 through O were simple derivations from a standard regression equation Regression equation

An equation that describes the average relationship between a dependent variable and a set of explanatory variables.
 and required only a fitting of the parameters and substitution into the equation (Bagenal, 1978). Method 10 however used a derivation of the Weibull distribution In probability theory and statistics, the Weibull distribution[1] (named after Waloddi Weibull) is a continuous probability distribution with the probability density function

 function. In this method, the parameter defining the asymptotic limit of the function (K) was modified by [L.sub.c]/[L.sub.p] as

(13) [L.sub.n] = (K([L.sub.c] / [L.sub.p]) (1- exp exp
abbr.
1. exponent

2. exponential
 [-([R.sub.c]/[alpha]].sup.[beta]),

where [L.sub.p] = the theoretical length of the fish according to according to
prep.
1. As stated or indicated by; on the authority of: according to historians.

2. In keeping with: according to instructions.

3.
 its otolith radius as predicted by the fitted OR-TL Weibull function; and

[L.sub.c] = the actual length at capture.

If, for instance, the actual length of the fish was less than the theoretical length ([L.sub.c]/[L.sub.p] is less than 1), the parameter K was corrected downward and subsequent back-calculations for that fish were made according to its own individual trajectory (Fig. 2). In this way, [L.sub.c]/[L.sub.p] was calculated for each individual fish in the same way that the slope of the Fraser-Lee back-calculation equation was estimated for each fish. These ten combinations were used for all available annuli and then repeated by using the last annulus only, for a total of twenty different methods.

[FIGURE 2 OMITTED]

As a measure of bias, the back-calculated length at age 2 was regressed on the age of the fish from which the estimate came (source age). In this way, for instance, a strong "Lee's phenomenon" (the phenomenon that back-calculated lengths for a given age group become smaller as the fish from which they are calculated become older) or a similar effect would result in a negative slope. If there is no bias caused by this approach, the expected value Expected value

The weighted average of a probability distribution. Also known as the mean value.
 of this slope is zero when randomly sampled from an unfished population.

The accuracy of each of the twenty methods of back-calculation was evaluated by plotting the percent error of the estimated length-at-age in relation to the true value. As an overall evaluation of the method, a sum-of-squares (SS) was calculated by squaring the percent error between the estimated length-at-age and the true length-at-age and summing across all ages.

Results

The true underlying mean length-at-age of both the surviving population and the catch (Table 2) was calculated and tabulated in standard back-calculation type tables. There was no apparent trend in the estimates as a function of the age used in the back-calculation. This lack of trend, and the high degree of similarity between the mean length-at-age of the population and catch suggested that the catch was a random and representative sample of the population.

Methods 2, 4, 6, 8, and 9 resulted in the least bias and method I the most bias when the slopes were examined across the various shapes of the OR-TL relation (Fig. 3). The linear shaped OR-TL (OR-TL/LIN) relation resulted in the ]east amount of bias, and the exponential shaped OR-TL (OR-TL/EXP) relation resulted in the most when the various relations were examined across methods.

[FIGURE 3 OMITTED]

Sigmoid-shaped OR-TL relation

Of the four functions fitted to the OR-TL/SIG relation (Table 3), the Weibull cumulative function resulted in the highest coefficient of determination Coefficient of determination

A measure of the goodness of fit of the relationship between the dependent and independent variables in a regression analysis; for instance, the percentage of variation in the return of an asset explained by the market portfolio return. Also known as R-square.
 ([r.sup.2]=0.914); however the coefficient of determination of the quadratic quadratic, mathematical expression of the second degree in one or more unknowns (see polynomial). The general quadratic in one unknown has the form ax2+bx+c, where a, b, and c are constants and x is the variable.  fit was very similar ([r.sup.2]=0.913).

The sigmoid shape of the OR-TL relation was evident in the shape of the percent error plots for methods I through 10 (Fig. 4). When the OR-TL relation was sigmoid-shaped and all annuli were used, the least error resulted from employing a ordinary least-squares regression coupled with the log-transformed Fraser-Lee back-calculation equation (method 7, SS=0.4913). The greatest error appeared when using the direct proportion equation (Fig. 4, method 1, SS=1.4016). Using the y-intercept of the OR-TL relation in the back-calculation equation (methods 3/13 and 5/14 in Table 1) had little effect on the total sum of squares when comparing method 2 with method 3; in addition, correcting for different limits of the Weibull function in methods 8 versus 10 had little effect. However, the log transformation of methods 6 and 7 reduced the sum of squares considerably.

[FIGURE 4 OMITTED]

The sigmoid shape of the OR-TL relation was not as evident in the shape of the percent error plots for methods 11 through 20 (Fig. 5). When only the last annulus was used, the least error resulted from employing a direct proportionality back-calculation equation (Fig. 5, method 11, SS=0.0951), and the greatest error from using direct substitution into the OLS regression equation (Fig. 5, method 12, SS=1.3938). When only the last annulus was used with comparable back-calculation equations, as in methods 12 versus 13 and 18 versus 20, both the sum of squares and bias were reduced considerably.

[FIGURE 5 OMITTED]

Linear-shaped OR-TL relation

Of the four functions fitted to OR-TL/LIN, the ordinary least squares and functional linear regressions resulted in the highest coefficient of determination value ([r.sup.2]=0.916).

The curvature of the Weibull and quadratic fits showed that the relation deviated slightly from a straight line. There was a high degree of similarity between the percent error plots for all twenty methods (Figs. 6 and 7), suggesting that the estimation of length-at-age is not as sensitive to the method of back-calculation when the OR-TL relation is linear as when it is curved. When the OR-TL relation was linear, the least error resulted from employing a functional regression coupled with the Fraser-Lee back-calculation equation when all annuli were used (Fig. 6, method 5, SS=0.0001) and when only the last annulus was used (Fig. 7, method 15, SS=0.0013). The greatest error resulted from direct substitution into the OLS regression following a natural log transformation of all parameters, both when all annuli were used (Fig. 6, method 6, SS=0.1296) and when only the last annulus (Fig. 7, method 16, SS=0.1245).

[FIGURES 6-7 OMITTED]

Exponentially shaped OR-TL relation

Of the four functions fitted to OR-TL/EXP, the quadratic function A quadratic function, in mathematics, is a polynomial function of the form , where .  resulted in the highest coefficient of determination ([r.sub.2]=0.883); however the coefficient of determination of the Weibull function fit was nearly as high ([r.sub.2]:0.878). The percent errors, when using all annuli and linear regression, followed a pattern similar to the residuals of the OR-TL relation (Fig. 8). This trend was also evident, although not as strong, when only the last annulus was used (Fig. 9). Using the quadratic function rather than the linear regression to fit the OR-TL relation did the most at removing this bias (Fig. 8 method 9, and Fig. 9 method 19).

[FIGURES 8-9 OMITTED]

When the OR-TL relation was exponentially shaped and all annuli were used, the least error resulted from direct substitution into the fitted quadratic equation (Fig. 8, method 9, SS=0.0580), and the greatest error from using the direct proportionality equation (Fig. 8, method 1, SS=1.6711). When only the last annulus was used, the least error resulted from direct substitution into the fitted quadratic equation (Fig. 9, method 19, SS=0.0662), and the greatest error from using direct substitution into the OLS regression equation (Fig. 9, method 12, SS=1.5882).

Asymptotically shaped OR-TL relation

Of the four functions fitted to OR-TL/ASYM, the quadratic equation resulted in the highest coefficient of determination ([r.sup.2]=0.963); however the coefficient of determination of the Weibull function fit was nearly as high ([r.sup.2]=0.958).

As with the exponentially shaped OR-TL relation, when linear regression was used to model the OR-TL relation, the percent error by age followed the trend of residuals for the residuals for the regression (Fig. 10). Using the last annulus only resulted in generally lower sums-of-squares, especially when the y-intercept was corrected for log transformation of the OR-TL relation used (Fig. 11).

[FIGURES 10-11 OMITTED]

When the OR-TL relation was asymptotically shaped and all annuli were used, the least error resulted from using the individually corrected Weibull cumulative distribution function (Fig. 10, method 10, SS=0.7388), and the greatest error from using direct substitution in to the OLS regression equation (Fig. 10, method 2, SS=1.9319). When only the last annulus was used, the least error again resulted from using the individually corrected Weibull cumulative distribution function (Fig. 11, method 20, SS=0.0516), and the greatest error from using direct substitution in to the OLS regression equation (Fig. 11, method 12, SS=1.9261).

Discussion

The most accurate estimates of length-at-age resulted from the best model fits of the OR-TL relation. Even though sampling was random, poorly fitted OR-TL regressions resulted in back-calculation tables with obvious "Lee's phenomenon" effects. Ricker (1969) pointed out that the use of an incorrect otolith radius-total length relationship can result in this effect. Smale and Taylor (1987) also showed that using the improper back-calculation method can result in a false "Lee's phenomenon" effect. Using only the last annulus reduced this effect with some back-calculation methods in this study, but not all of them. In general, the accuracy of the estimated length-at-age was directly related to how well the particular model fitted the OR-TL relation, suggesting that the OR-TL model is just as, if not more, important as selecting the appropriate back-calculation model.

Based on the importance of the fit of the OR-TL model, it follows that the methods used to sample the catch are of equal importance. Nonrandom samples of the catch, or length-based regulations that cause the catch to misrepresent mis·rep·re·sent  
tr.v. mis·rep·re·sent·ed, mis·rep·re·sent·ing, mis·rep·re·sents
1. To give an incorrect or misleading representation of.

2.
 the population, will affect the OR-TL regression. For instance, a minimum legal size will artificially truncate To cut off leading or trailing digits or characters from an item of data without regard to the accuracy of the remaining characters. Truncation occurs when data are converted into a new record with smaller field lengths than the original.  the OR-TL relation in samples of the catch and selectively sample faster-growing small fish. This could eliminate the youngest ages from the regression and could necessitate extrapolation (mathematics, algorithm) extrapolation - A mathematical procedure which estimates values of a function for certain desired inputs given values for known inputs.

If the desired input is outside the range of the known values this is called extrapolation, if it is inside then
 of the regression beyond the range of the data. Furthermore, a truncation of the OR-TL regression would positively bias the y-intercept and lead to an overestimation o·ver·es·ti·mate  
tr.v. o·ver·es·ti·mat·ed, o·ver·es·ti·mat·ing, o·ver·es·ti·mates
1. To estimate too highly.

2. To esteem too greatly.
 of length-at-age, especially for the younger ages.

It has been pointed out that univariate statistical models, which assume independence of observations, are generally inappropriate for analysis of otolith increment data (Chambers and Miller, 1995). These authors have suggested that because otolith data constitute multiple measures, perhaps examination of the covariance Covariance

A measure of the degree to which returns on two risky assets move in tandem. A positive covariance means that asset returns move together. A negative covariance means returns vary inversely.
 is more appropriate than the comparison of individual means. In this study, however, I did not seek to emphasize the existence of (or lack of) a statistical difference between the true and estimated means sizes. Given the large sample sizes made available through simulation, conclusions of significant differences resulting from any statistical tests can be misleading. More useful, I believe, is the shape, direction, and magnitude of the biases that emerged from each back-calculation method. Consequently, I chose to emphasize the percent error between the true and estimated mean size-at-age. Using percent error allows more freedom of interpretation and is not subject to the problems associated with excessively large degrees of freedom of simulated data sets.

The individually corrected Weibull cumulative distribution function presented here proved to be very flexible and capable of accounting for the individual otolith radiustotal length trajectories. This function is very similar to the linear y-intercept corrected back-calculation equation of Fraser-Lee but can accommodate a wide varieties of curvatures. The Weibull equation I reported (Eq. 13) has an origin at x and y of 0; however, a y-intercept term can easily be added to accommodate an OR-TL relation with a nonzero non·ze·ro  
adj.
Not equal to zero.



nonzero  

Not equal to zero.
 intercept.

Much of the cohort's diversity in biological attributes was lost within the first few months of the life because of mortalities. By the time the cohort had completed one year of growth, the diversity in biological attributes of the individuals that would ultimately represent the cohort were established. Based on the observations of Secor and Houde (1995), the establishment of the biological attributes of a cohort occurring after one year is a realistic representation of what occurs in the early life history of striped bass. Although the number of fish that a cell represented could be less than one, this number was used as a relative weighting to all other cells; thus, proportionally, the value was valid. Consequently, the actual starting number of fish of the cohort was irrelevant for this study but could be used to calibrate To adjust or bring into balance. Scanners, CRTs and similar peripherals may require periodic adjustment. Unlike digital devices, the electronic components within these analog devices may change from their original specification. See color calibration and tweak.  the model to a particular population of interest.

I was able to simulate a number of dissimilarly shaped OR-TL relationships by modifying the parameter used to convert brain weight to otolith weight from a constant to a function. However, trial runs showed that when this parameter was held constant, the resulting OR-TL relation was not linear. I later determined that because both soma and otolith growth were modeled as functions of weight and because the exponent of the weight-length equation (0.31) did not exactly equal the exponent of the equation that calculates the radius of a sphere (0.333), two rates must at some point diverge diverge - If a series of approximations to some value get progressively further from it then the series is said to diverge.

The reduction of some term under some evaluation strategy diverges if it does not reach a normal form after a finite number of reductions.
 from linearity. For the purposes of this study, it was not necessary that the equations precisely depict the actual bioenergetics processes, only that true length of fish at annulus formation be known with certainty.

This study yields several conclusions important to studies of growth estimates from otolith back-calculations. The best back-calculation technique was directly related to how well the OR-TL model fitted. The percent error of any given method was rarely consistent across ages, although estimates of older ages were more accurate than those of younger ones. Younger ages were generally best estimated by using direct proportionality on the last annulus only. Thus, it may be necessary to use multiple methods to accurately estimate a growth curve. However, it would be difficult to select which combination of methods would be most accurate without prior knowledge of the true length-at-age.
Table 1

The ten back-calculation and OR-TL regression equations evaluated in
this study. Method number refers to all annulus/last annulus only.
[L.sub.n] is the estimated length at formation of annulus [R.sub.n];
[L.sub.c] and [R.sub.c] is total length of fish and otolith radius at
capture, respectively. OLS = ordinary least squares.

Method    Back-calculation equation

 1/11     [L.sub.n] = ([R.sub.n]/[R.sub.c])[L.sub.c]
 2/12     [L.sub.n] = a + (b[R.sub.n])
 3/13     [L.sub.n] = a + ([R.sub.n]/[R.sub.c]) ([L.sub.c] - a)
 4/14     [L.sub.n]  = a + (b[R.sub.n])
 5/15     [L.sub.n] = a + ([R.sub.n]/[R.sub.c]) ([L.sub.c] - a)
 6/16     [log.sub.e]([L.sub.n]) = [log.sub.e](a) +
            b([log.sub.e]([R.sub.n]))
 7/17     [log.sub.e]([L.sub.n]) = [log.sub.e](L.sub.c) +
            b([log.sub.e]([R.sub.n])-[log.sub.e]([R.sub.c]))
 8/18     [L.sub.n] = K(1-[exp(-([R.sub.n]/[alpha]).sup.[beta]]))
 9/19     [L.sub.n] = c + (d[R.sub.n]) + (e[R.sub.n.sup.2]) +
            (f[R.sup.3.sub.n])
10/20     [L.sub.n] = (K([L.sub.c]/[L.sub.p])) (1 - [exp(-([R.sub.n]/
            [alpha]).sup.[beta]]))

Method              OR-TL fitting method

 1/11     none
 2/12     OLS linear regression
 3/13     OLS linear regression
 4/14     functional linear regression
 5/15     functional linear regression
 6/16     OLS linear regression with log transformation
 7/17     OLS linear regression with log transformation
 8/18     Weibull cumulative function
 9/19     quadratic equation
10/20     Weibull cumulative function

Table 2

Age (yr)  1      2      3      4      5      6      7      8

Age and calculated true mean length-at-age (mm) for a typical simulated
population.

 1      102     --     --     --     --     --     --     --
 2      108    208     --     --     --     --     --     --
 3      108    208    330     --     --     --     --     --
 4      108    208    329    457     --     --     --     --
 5      107    207    329    457    573     --     --     --
 6      107    207    329    457    572    674     --     --
 7      107    207    329    457    572    674    763     --
 8      108    207    329    457    574    676    766    845
 9      108    208    330    459    576    679    769    849
10      108    208    330    460    578    681    772    853
11      108    208    331    460    577    680    771    852
12      108    208    331    460    577    680    771    851
13      109    208    331    460    578    681    772    853
14      109    208    331    459    577    678    769    849
Mean    104    208    330    458    575    677    768    850

Age and calculated true mean length-at-age (mm) for a typical simulated
catch.

Age (yr)  1      2      3       4       5       6      7      8

 1      102     --     --      --      --      --      --     --
 2      109    207     --      --      --      --      --     --
 3      108    207     323     --      --      --      --     --
 4      108    208     323     448     --      --      --     --
 5      108    205     321     449     572     --      --     --
 6      107    205     319     445     567     673     --     --
 7      108    206     323     448     569     676    765     --
 8      107    206     322     450     572     680    771    853
 9      108    207     323     449     571     679    771    853
10      108    205     318     443     562     665    755    834
11      109    206     320     442     561     667    757    836
12      107    204     316     438     557     661    751    831
13      107    204     315     439     559     664    756    838
14      108    203     316     442     563     670    763    844
Mean    106    206     321     446     567     672    763    843

Age (yr)  9     10      11      12      13      14     n

Age and calculated true mean length-at-age (mm) for a typical
simulated population.

 1       --     --      --      --      --      --    250
 2       --     --      --      --      --      --    250
 3       --     --      --      --      --      --    250
 4       --     --      --      --      --      --    250
 5       --     --      --      --      --      --    250
 6       --     --      --      --      --      --    250
 7       --     --      --      --      --      --    250
 8       --     --      --      --      --      --    250
 9      917     --      --      --      --      --    250
10      921    980      --      --      --      --    250
11      920    981    1032      --      --      --    250
12      920    980    1031    1077      --      --    250
13      920    980    1031    1076    1115      --    250
14      916    974    1025    1070    1108    1139    250
Mean    918    978    1029    1073    1110    1138

Age and calculated true mean length-at-age (mm) for a typical
simulated catch.

Age (yr)  9     10      11      12      13      14     n

 1       --     --      --      --      --      --    117
 2       --     --      --      --      --      --    105
 3       --     --      --      --      --      --    101
 4       --     --      --      --      --      --     86
 5       --     --      --      --      --      --     93
 6       --     --      --      --      --      --     95
 7       --     --      --      --      --      --     98
 8       --     --      --      --      --      --    104
 9      918     --      --      --      --      --    115
10      901    962      --      --      --      --    105
11      903    964    1016      --      --      --    106
12      901    964    1017    1060      --      --    102
13      908    973    1027    1071    1107      --    101
14      910    970    1021    1061    1096    1127     88
Mean    908    966    1020    1064    1102    1127

Table 3

Summary of the combination of OR-TL and back-calculation models that
resulted in the best lack-of-fit (lowest sum of squares [SS]) for each
of the four shapes of OR-TL examined

                        Best lack-of-fit result

OR-TL shape                    OR-TL model

Sigmoid
  All annuli           linear regression, model I
  Last annulus only    none

Linear
  All annuli           linear regression, model II
  Last annulus only    linear regression, model II

Exponential
  All annuli           quadratic equation
  Last annulus only    quadratic equation

Asymptotic
  All annuli           Weibull cumulative function
  Last annulus only    Weibull cumulative function

                              Best lack-of-fit result

OR-TL shape            Back-calculation model

Sigmoid
  All annuli           [log.sub.e]([L.sub.n]) = [log.sub.e]([L.sub.c])
                         + b([log.sub.e]([R.sub.n]) - [log.sub.e]
                         ([R.sub.c]))
  Last annulus only    [L.sub.n] = ([R.sub.n] / [R.sub.c]) [L.sub.c]

Linear
  All annuli           [L.sub.n] = a + ([R.sub.n] / [R.sub.c])
                         ([L.sub.c] - a)
  Last annulus only    [L.sub.n] = a + ([R.sub.n] / [R.sub.c])
                         ([L.sub.c] - a)

Exponential
  All annuli           [L.sub.n] = c + (d[R.sub.n]) +
                         (e[R.sub.n.sup.2]) + (f[R.sub.n.sup.3])
  Last annulus only    [L.sub.n] = c + (d[R.sub.n]) +
                         (e[R.sub.n.sup.2]) + (f[R.sub.n.sup.3])

Asymptotic
  All annuli           [L.sub.n] = (K([L.sub.c] / [L.sub.p]))(1 -
                         [exp(-([R.sub.n] / [alpha]).sup.[beta]]))
  Last annulus only    [L.sub.n] = (K([L.sub.c] / [L.sub.p]))(1 -
                         [exp(-([R.sub.n] / [alpha]).sup.[beta]]))


Acknowledgments

I would like to acknowledge the following people for their contributions to this work: J. A. Bohsack, C. P. Goodyear, P. Johnson, S. Quackenbush, and J. C. Trexler. And I would like to thank the manuscript reviewers for their editorial comments.

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Manuscript accepted 29 May 2002. Fish. Bull. 100:789-799 (2002).
Michael J. Schirripa
Hatfield Marine Science Center
Northwest Fisheries Science Center
2030 SE Marine Science Drive
Newport, Oregon 97365-5296
E-mail address: Michael.Schirripa@noaa.gov
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